rn6_v1_chr18_-_26211445_26211445	0.310043	Sox6_Sox9	ENSRNOT00000027739|Nrep|ENSRNOG00000020467|neuronal regeneration related protein [Source:RGD Symbol%3BAcc:631411]
rn6_v1_chr17_-_57394985_57394985	0.220997	Sox6_Sox9	ENSRNOT00000019968|Epc1|ENSRNOG00000014834|enhancer of polycomb homolog 1 [Source:RGD Symbol%3BAcc:2324280]
rn6_v1_chr3_+_155160481_155160481	0.217701	Sox6_Sox9	ENSRNOT00000021133|Ppp1r16b|ENSRNOG00000015614|protein phosphatase 1%2C regulatory subunit 16B [Source:RGD Symbol%3BAcc:1589460]
rn6_v1_chr1_-_190965115_190965115	0.198618	Sox6_Sox9	ENSRNOT00000023483|AC103221.1|ENSRNOG00000017330|
rn6_v1_chr8_+_5967463_5967463	0.191255	Sox6_Sox9	ENSRNOT00000086251|Tmem123|ENSRNOG00000010584|transmembrane protein 123 [Source:RGD Symbol%3BAcc:1305625]
rn6_v1_chr4_+_84423653_84423653	0.182063	Sox6_Sox9	ENSRNOT00000012655|Chn2|ENSRNOG00000009411|chimerin 2 [Source:RGD Symbol%3BAcc:620140]
rn6_v1_chr8_-_68038533_68038533	0.175136	Sox6_Sox9	ENSRNOT00000018756|Skor1|ENSRNOG00000013959|SKI family transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:1307687]
rn6_v1_chr18_+_30562178_30562178	0.146108	Sox6_Sox9	ENSRNOT00000040998|LOC108348771|ENSRNOG00000039471|protocadherin beta-16-like [Source:RGD Symbol%3BAcc:11492646]
rn6_v1_chr18_+_30890869_30890869	0.146085	Sox6_Sox9	ENSRNOT00000060466|Pcdhgb6|ENSRNOG00000039455|protocadherin gamma subfamily B%2C 6 [Source:RGD Symbol%3BAcc:7743693]
rn6_v1_chr6_+_110624856_110624856	0.132619	Sox6_Sox9	ENSRNOT00000014017|Vash1|ENSRNOG00000010457|vasohibin 1 [Source:RGD Symbol%3BAcc:1564082]
rn6_v1_chr7_+_99954492_99954492	0.130774	Sox6_Sox9	ENSRNOT00000005885|Trib1|ENSRNOG00000004100|tribbles pseudokinase 1 [Source:RGD Symbol%3BAcc:621596]
rn6_v1_chr10_+_14547172_14547172	0.127911	Sox6_Sox9	ENSRNOT00000092043|Unkl|ENSRNOG00000054605|unkempt family like zinc finger [Source:RGD Symbol%3BAcc:1565247]
rn6_v1_chr1_-_277902279_277902279	0.127615	Sox6_Sox9	ENSRNOT00000078416|Ablim1|ENSRNOG00000046333|actin-binding LIM protein 1 [Source:RGD Symbol%3BAcc:1565768]
rn6_v1_chr11_+_16826399_16826399	0.126354	Sox6_Sox9	ENSRNOT00000050701|Cxadr|ENSRNOG00000001557|coxsackie virus and adenovirus receptor [Source:RGD Symbol%3BAcc:619794]
rn6_v1_chr9_+_46657575_46657575	0.122456	Sox6_Sox9	ENSRNOT00000083322|Map4k4|ENSRNOG00000014013|mitogen-activated protein kinase kinase kinase kinase 4 [Source:RGD Symbol%3BAcc:1305322]
rn6_v1_chr10_+_82823918_82823918	0.122079	Sox6_Sox9	ENSRNOT00000005519|Samd14|ENSRNOG00000004155|sterile alpha motif domain containing 14 [Source:RGD Symbol%3BAcc:1306138]
rn6_v1_chr16_-_71319449_71319449	0.117906	Sox6_Sox9	ENSRNOT00000029284|Fgfr1|ENSRNOG00000016050|Fibroblast growth factor receptor 1 [Source:RGD Symbol%3BAcc:620713]
rn6_v1_chr8_-_6203515_6203579	0.117587	Sox6_Sox9	ENSRNOT00000087278|Yap1|ENSRNOG00000005933|yes-associated protein 1 [Source:RGD Symbol%3BAcc:1306035]	ENSRNOT00000031189|Yap1|ENSRNOG00000005933|yes-associated protein 1 [Source:RGD Symbol%3BAcc:1306035]	ENSRNOT00000008074|Yap1|ENSRNOG00000005933|yes-associated protein 1 [Source:RGD Symbol%3BAcc:1306035]	ENSRNOT00000085285|Yap1|ENSRNOG00000005933|yes-associated protein 1 [Source:RGD Symbol%3BAcc:1306035]	ENSRNOT00000007866|Yap1|ENSRNOG00000005933|yes-associated protein 1 [Source:RGD Symbol%3BAcc:1306035]
rn6_v1_chr9_-_100253609_100253609	0.116921	Sox6_Sox9	ENSRNOT00000036061|Kif1a|ENSRNOG00000023993|kinesin family member 1A [Source:RGD Symbol%3BAcc:1304996]
rn6_v1_chr3_+_103773459_103773459	0.116322	Sox6_Sox9	ENSRNOT00000079727|Slc12a6|ENSRNOG00000005196|solute carrier family 12%2C member 6 [Source:RGD Symbol%3BAcc:1311335]
rn6_v1_chr1_+_236580034_236580034	0.113885	Sox6_Sox9	ENSRNOT00000074939|Gcnt1|ENSRNOG00000050534|glucosaminyl (N-acetyl) transferase 1%2C core 2 [Source:RGD Symbol%3BAcc:621370]
rn6_v1_chrX_-_73778595_73778674	0.110973	Sox6_Sox9	ENSRNOT00000076081|Rlim|ENSRNOG00000002824|ring finger protein%2C LIM domain interacting [Source:RGD Symbol%3BAcc:1559832]	ENSRNOT00000075926|Rlim|ENSRNOG00000002824|ring finger protein%2C LIM domain interacting [Source:RGD Symbol%3BAcc:1559832]	ENSRNOT00000003782|Rlim|ENSRNOG00000002824|ring finger protein%2C LIM domain interacting [Source:RGD Symbol%3BAcc:1559832]
rn6_v1_chr6_+_147876237_147876237	0.110161	Sox6_Sox9	ENSRNOT00000056649|Tmem196|ENSRNOG00000037435|transmembrane protein 196 [Source:RGD Symbol%3BAcc:1562527]
rn6_v1_chr18_+_30826260_30826260	0.107136	Sox6_Sox9	ENSRNOT00000065235|Pcdhgb1|ENSRNOG00000042264|protocadherin gamma subfamily B%2C 1 [Source:MGI Symbol%3BAcc:MGI:1935169]
rn6_v1_chr10_-_18131562_18131562	0.0979141	Sox6_Sox9	ENSRNOT00000006676|Tlx3|ENSRNOG00000004976|T-cell leukemia%2C homeobox 3 [Source:RGD Symbol%3BAcc:1564190]
rn6_v1_chr2_+_2729829_2729829	0.0965718	Sox6_Sox9	ENSRNOT00000017068|Spata9|ENSRNOG00000012770|spermatogenesis associated 9 [Source:RGD Symbol%3BAcc:1308291]
rn6_v1_chr3_-_9936352_9936405	0.0965316	Sox6_Sox9	ENSRNOT00000011224|Fnbp1|ENSRNOG00000008258|formin binding protein 1 [Source:RGD Symbol%3BAcc:621350]	ENSRNOT00000042798|Fnbp1|ENSRNOG00000008258|formin binding protein 1 [Source:RGD Symbol%3BAcc:621350]
rn6_v1_chr3_+_48082935_48082968	0.0944236	Sox6_Sox9	ENSRNOT00000087711|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000067545|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr6_+_106052212_106052212	0.093616	Sox6_Sox9	ENSRNOT00000010626|Sipa1l1|ENSRNOG00000007646|signal-induced proliferation-associated 1 like 1 [Source:RGD Symbol%3BAcc:708497]
rn6_v1_chr4_-_88565292_88565292	0.0935492	Sox6_Sox9	ENSRNOT00000008948|Lancl2|ENSRNOG00000006810|LanC like 2 [Source:RGD Symbol%3BAcc:1310809]
rn6_v1_chr19_-_26053762_26053762	0.0932495	Sox6_Sox9	ENSRNOT00000004646|MAST1|ENSRNOG00000003469|microtubule associated serine/threonine kinase 1 [Source:RGD Symbol%3BAcc:631372]
rn6_v1_chr6_-_79306443_79306443	0.0915791	Sox6_Sox9	ENSRNOT00000030706|Clec14a|ENSRNOG00000022697|C-type lectin domain family 14%2C member A [Source:RGD Symbol%3BAcc:1306232]
rn6_v1_chr18_+_30435119_30435119	0.0913663	Sox6_Sox9	ENSRNOT00000027190|Pcdhb8|ENSRNOG00000020073|protocadherin beta 8 [Source:RGD Symbol%3BAcc:1309895]
rn6_v1_chr16_-_7538201_7538201	0.0893869	Sox6_Sox9	ENSRNOT00000082172|Sh3bp5|ENSRNOG00000052391|SH3-domain binding protein 5 [Source:RGD Symbol%3BAcc:620220]
rn6_v1_chr4_+_145264462_145264462	0.0891581	Sox6_Sox9	ENSRNOT00000011246|Brpf1|ENSRNOG00000008142|bromodomain and PHD finger containing%2C 1 [Source:RGD Symbol%3BAcc:1584828]
rn6_v1_chr8_+_69971778_69971778	0.0877466	Sox6_Sox9	ENSRNOT00000058007|Megf11|ENSRNOG00000010634|multiple EGF-like-domains 11 [Source:RGD Symbol%3BAcc:1582797]	ENSRNOT00000037941|Megf11|ENSRNOG00000010634|multiple EGF-like-domains 11 [Source:RGD Symbol%3BAcc:1582797]	ENSRNOT00000050649|Megf11|ENSRNOG00000010634|multiple EGF-like-domains 11 [Source:RGD Symbol%3BAcc:1582797]
rn6_v1_chr5_+_21830882_21830882	0.0877168	Sox6_Sox9	ENSRNOT00000008901|Chd7|ENSRNOG00000006689|chromodomain helicase DNA binding protein 7 [Source:RGD Symbol%3BAcc:1311921]
rn6_v1_chr1_+_177093387_177093387	0.0868182	Sox6_Sox9	ENSRNOT00000021858|Mical2|ENSRNOG00000016244|microtubule associated monooxygenase%2C calponin and LIM domain containing 2 [Source:RGD Symbol%3BAcc:1311773]
rn6_v1_chr17_+_18151982_18151982	0.0865636	Sox6_Sox9	ENSRNOT00000066447|Kif13a|ENSRNOG00000001455|kinesin family member 13A [Source:RGD Symbol%3BAcc:1307825]
rn6_v1_chr7_-_114305896_114305896	0.086364	Sox6_Sox9	ENSRNOT00000067327|Trappc9|ENSRNOG00000027569|trafficking protein particle complex 9 [Source:RGD Symbol%3BAcc:1309461]	ENSRNOT00000038172|Trappc9|ENSRNOG00000027569|trafficking protein particle complex 9 [Source:RGD Symbol%3BAcc:1309461]
rn6_v1_chr4_+_68656928_68656928	0.086338	Sox6_Sox9	ENSRNOT00000016232|Tas2r108|ENSRNOG00000012195|taste receptor%2C type 2%2C member 108 [Source:RGD Symbol%3BAcc:1561194]
rn6_v1_chr10_+_23661013_23661013	0.0824614	Sox6_Sox9	ENSRNOT00000076664|Ebf1|ENSRNOG00000028845|early B-cell factor 1 [Source:RGD Symbol%3BAcc:620953]
rn6_v1_chr5_-_153625869_153625869	0.0820938	Sox6_Sox9	ENSRNOT00000024464|Clic4|ENSRNOG00000018109|chloride intracellular channel 4 [Source:RGD Symbol%3BAcc:61857]
rn6_v1_chr17_+_70684134_70684134	0.0819122	Sox6_Sox9	ENSRNOT00000025731|Pfkfb3|ENSRNOG00000018911|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 3 [Source:RGD Symbol%3BAcc:619776]	ENSRNOT00000068354|Pfkfb3|ENSRNOG00000018911|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 3 [Source:RGD Symbol%3BAcc:619776]
rn6_v1_chr7_-_107768072_107768072	0.081874	Sox6_Sox9	ENSRNOT00000093189|Ndrg1|ENSRNOG00000007393|N-myc downstream regulated 1 [Source:RGD Symbol%3BAcc:1307303]
rn6_v1_chr14_-_81399353_81399353	0.0794244	Sox6_Sox9	ENSRNOT00000018340|Add1|ENSRNOG00000013039|adducin 1 [Source:RGD Symbol%3BAcc:2041]
rn6_v1_chr17_+_70684539_70684539	0.0779781	Sox6_Sox9	ENSRNOT00000025700|Pfkfb3|ENSRNOG00000018911|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 3 [Source:RGD Symbol%3BAcc:619776]
rn6_v1_chr8_+_59457018_59457018	0.0777432	Sox6_Sox9	ENSRNOT00000017900|Ireb2|ENSRNOG00000013271|iron responsive element binding protein 2 [Source:RGD Symbol%3BAcc:621539]
rn6_v1_chr4_-_123713319_123713464	0.0745753	Sox6_Sox9	ENSRNOT00000012875|Slc6a6|ENSRNOG00000009019|solute carrier family 6 member 6 [Source:RGD Symbol%3BAcc:61912]	ENSRNOT00000086982|Slc6a6|ENSRNOG00000009019|solute carrier family 6 member 6 [Source:RGD Symbol%3BAcc:61912]
rn6_v1_chr9_+_14551758_14551758	0.0738439	Sox6_Sox9	ENSRNOT00000017157|Nfya|ENSRNOG00000012702|nuclear transcription factor Y subunit alpha [Source:RGD Symbol%3BAcc:70976]
rn6_v1_chr1_+_31124825_31124825	0.0729841	Sox6_Sox9	ENSRNOT00000092105|AABR07000989.1|ENSRNOG00000061741|
rn6_v1_chr4_-_11610518_11610518	0.0719269	Sox6_Sox9	ENSRNOT00000066643|Magi2|ENSRNOG00000013962|membrane associated guanylate kinase%2C WW and PDZ domain containing 2 [Source:RGD Symbol%3BAcc:621855]
rn6_v1_chr2_+_104744461_104744476	0.0709034	Sox6_Sox9	ENSRNOT00000016083|Cp|ENSRNOG00000011913|ceruloplasmin [Source:RGD Symbol%3BAcc:2387]	ENSRNOT00000082627|Cp|ENSRNOG00000011913|ceruloplasmin [Source:RGD Symbol%3BAcc:2387]
rn6_v1_chr7_-_70467915_70467915	0.070528	Sox6_Sox9	ENSRNOT00000088995|Slc26a10|ENSRNOG00000029465|solute carrier family 26%2C member 10 [Source:RGD Symbol%3BAcc:1564851]
rn6_v1_chr10_-_90393317_90393317	0.0703682	Sox6_Sox9	ENSRNOT00000028563|Fam171a2|ENSRNOG00000021041|family with sequence similarity 171%2C member A2 [Source:RGD Symbol%3BAcc:1307966]
rn6_v1_chr8_-_62987182_62987182	0.069867	Sox6_Sox9	ENSRNOT00000070885|Islr2|ENSRNOG00000050714|immunoglobulin superfamily containing leucine-rich repeat 2 [Source:RGD Symbol%3BAcc:6497037]
rn6_v1_chr18_+_30913842_30913842	0.0677144	Sox6_Sox9	ENSRNOT00000026947|Pcdhgc3|ENSRNOG00000019799|protocadherin gamma subfamily C%2C 3 [Source:EntrezGene%3BAcc:116782]
rn6_v1_chr13_-_70922245_70922245	0.0675911	Sox6_Sox9	ENSRNOT00000064860|Dhx9|ENSRNOG00000002735|DExH-box helicase 9 [Source:RGD Symbol%3BAcc:1308548]
rn6_v1_chr5_+_152606847_152606847	0.0672649	Sox6_Sox9	ENSRNOT00000089070|Pafah2|ENSRNOG00000022288|platelet-activating factor acetylhydrolase 2 [Source:RGD Symbol%3BAcc:631399]
rn6_v1_chr14_+_17492081_17492081	0.0668857	Sox6_Sox9	ENSRNOT00000003346|G3bp2|ENSRNOG00000002433|G3BP stress granule assembly factor 2 [Source:RGD Symbol%3BAcc:1309571]
rn6_v1_chr3_-_156777999_156777999	0.0656243	Sox6_Sox9	ENSRNOT00000032588|Zhx3|ENSRNOG00000027988|zinc fingers and homeoboxes 3 [Source:RGD Symbol%3BAcc:631431]	ENSRNOT00000091208|Zhx3|ENSRNOG00000027988|zinc fingers and homeoboxes 3 [Source:RGD Symbol%3BAcc:631431]
rn6_v1_chr5_-_86696388_86696388	0.0649315	Sox6_Sox9	ENSRNOT00000007812|Megf9|ENSRNOG00000005932|multiple EGF-like-domains 9 [Source:RGD Symbol%3BAcc:1308330]
rn6_v1_chr3_+_116899878_116899906	0.0648284	Sox6_Sox9	ENSRNOT00000090802|Sema6d|ENSRNOG00000004812|semaphorin 6D [Source:RGD Symbol%3BAcc:1310910]	ENSRNOT00000066101|Sema6d|ENSRNOG00000004812|semaphorin 6D [Source:RGD Symbol%3BAcc:1310910]
rn6_v1_chr18_+_30869628_30869628	0.0642871	Sox6_Sox9	ENSRNOT00000060470|Pcdhgb4|ENSRNOG00000039459|protocadherin gamma subfamily B%2C 4 [Source:RGD Symbol%3BAcc:7632725]
rn6_v1_chr12_+_38303624_38303624	0.0636817	Sox6_Sox9	ENSRNOT00000001668|Zcchc8|ENSRNOG00000001243|zinc finger CCHC-type containing 8 [Source:RGD Symbol%3BAcc:1309774]
rn6_v1_chr3_+_162357356_162357356	0.0636416	Sox6_Sox9	ENSRNOT00000030119|Eya2|ENSRNOG00000019203|EYA transcriptional coactivator and phosphatase 2 [Source:RGD Symbol%3BAcc:620096]
rn6_v1_chr5_-_139748489_139748489	0.0621483	Sox6_Sox9	ENSRNOT00000078741|Nfyc|ENSRNOG00000010735|nuclear transcription factor Y subunit gamma [Source:RGD Symbol%3BAcc:3173]
rn6_v1_chr18_+_15467870_15467870	0.0615369	Sox6_Sox9	ENSRNOT00000091696|B4galt6|ENSRNOG00000015895|beta-1%2C4-galactosyltransferase 6 [Source:RGD Symbol%3BAcc:71046]
rn6_v1_chr9_+_6966908_6966908	0.0609687	Sox6_Sox9	ENSRNOT00000072796|St6gal2|ENSRNOG00000046515|ST6 beta-galactoside alpha-2%2C6-sialyltransferase 2 [Source:RGD Symbol%3BAcc:1559663]
rn6_v1_chr1_+_13595295_13595295	0.0607448	Sox6_Sox9	ENSRNOT00000079250|Nhsl1|ENSRNOG00000060603|NHS-like 1 [Source:RGD Symbol%3BAcc:1308124]
rn6_v1_chr4_-_180234804_180234804	0.0607087	Sox6_Sox9	ENSRNOT00000070957|Bhlhe41|ENSRNOG00000048961|basic helix-loop-helix family%2C member e41 [Source:RGD Symbol%3BAcc:70900]
rn6_v1_chr9_-_85528860_85528869	0.0600026	Sox6_Sox9	ENSRNOT00000063834|Wdfy1|ENSRNOG00000015080|WD repeat and FYVE domain containing 1 [Source:RGD Symbol%3BAcc:1305996]	ENSRNOT00000088963|Wdfy1|ENSRNOG00000015080|WD repeat and FYVE domain containing 1 [Source:RGD Symbol%3BAcc:1305996]
rn6_v1_chr6_-_42473738_42473738	0.0598275	Sox6_Sox9	ENSRNOT00000033327|Kcnf1|ENSRNOG00000024310|potassium voltage-gated channel modifier subfamily F member 1 [Source:RGD Symbol%3BAcc:631414]
rn6_v1_chr14_+_11198896_11198896	0.0596996	Sox6_Sox9	ENSRNOT00000079767|Hnrnpdl|ENSRNOG00000002270|heterogeneous nuclear ribonucleoprotein D-like [Source:RGD Symbol%3BAcc:1309950]
rn6_v1_chr16_-_71319052_71319052	0.0590553	Sox6_Sox9	ENSRNOT00000050980|Fgfr1|ENSRNOG00000016050|Fibroblast growth factor receptor 1 [Source:RGD Symbol%3BAcc:620713]
rn6_v1_chr12_+_23473270_23473270	0.0590532	Sox6_Sox9	ENSRNOT00000001935|Sh2b2|ENSRNOG00000001425|SH2B adaptor protein 2 [Source:RGD Symbol%3BAcc:69284]
rn6_v1_chr14_-_84106997_84106997	0.0580482	Sox6_Sox9	ENSRNOT00000065501|Osbp2|ENSRNOG00000019645|oxysterol binding protein 2 [Source:RGD Symbol%3BAcc:1310505]
rn6_v1_chr4_+_44774741_44774741	0.0577519	Sox6_Sox9	ENSRNOT00000086902|Met|ENSRNOG00000052745|MET proto-oncogene%2C receptor tyrosine kinase [Source:RGD Symbol%3BAcc:3082]
rn6_v1_chr14_-_104960141_104960141	0.0576897	Sox6_Sox9	ENSRNOT00000056944|Aftph|ENSRNOG00000005411|aftiphilin [Source:RGD Symbol%3BAcc:1311920]
rn6_v1_chr15_-_3773340_3773340	0.0574528	Sox6_Sox9	ENSRNOT00000063831|LOC103689945|ENSRNOG00000009596|zinc finger SWIM domain-containing protein 8-like [Source:RGD Symbol%3BAcc:9188719]
rn6_v1_chr14_-_82287108_82287108	0.0569195	Sox6_Sox9	ENSRNOT00000023144|Fgfr3|ENSRNOG00000016818|fibroblast growth factor receptor 3 [Source:RGD Symbol%3BAcc:620714]
rn6_v1_chr18_+_30900291_30900291	0.0565652	Sox6_Sox9	ENSRNOT00000060461|Pcdhgb7|ENSRNOG00000039454|protocadherin gamma subfamily B%2C 7 [Source:RGD Symbol%3BAcc:1588516]
rn6_v1_chr15_-_24374753_24374753	0.0544057	Sox6_Sox9	ENSRNOT00000016274|Atg14|ENSRNOG00000011873|autophagy related 14 [Source:RGD Symbol%3BAcc:1304610]
rn6_v1_chr7_+_141702038_141702038	0.0531153	Sox6_Sox9	ENSRNOT00000086577|Dip2b|ENSRNOG00000056106|disco-interacting protein 2 homolog B [Source:RGD Symbol%3BAcc:1305671]
rn6_v1_chr18_-_16497886_16497886	0.052275	Sox6_Sox9	ENSRNOT00000021624|Rprd1a|ENSRNOG00000016036|regulation of nuclear pre-mRNA domain containing 1A [Source:RGD Symbol%3BAcc:1307374]
rn6_v1_chr14_+_2613406_2613406	0.0522118	Sox6_Sox9	ENSRNOT00000000083|Tmed5|ENSRNOG00000000073|transmembrane p24 trafficking protein 5 [Source:RGD Symbol%3BAcc:1359437]
rn6_v1_chr4_+_170518673_170518673	0.0521634	Sox6_Sox9	ENSRNOT00000011803|Atf7ip|ENSRNOG00000008870|activating transcription factor 7 interacting protein [Source:RGD Symbol%3BAcc:1306030]
rn6_v1_chr18_+_30880020_30880020	0.0516516	Sox6_Sox9	ENSRNOT00000060468|Pcdhgb5|ENSRNOG00000039457|protocadherin gamma subfamily B%2C 5 [Source:RGD Symbol%3BAcc:1591752]
rn6_v1_chr6_-_125723732_125723732	0.0514432	Sox6_Sox9	ENSRNOT00000084815|Fbln5|ENSRNOG00000050539|fibulin 5 [Source:RGD Symbol%3BAcc:2594]
rn6_v1_chr8_-_82533689_82533689	0.0513578	Sox6_Sox9	ENSRNOT00000014124|Tmod2|ENSRNOG00000010447|tropomodulin 2 [Source:RGD Symbol%3BAcc:61948]
rn6_v1_chr7_-_117587103_117587103	0.0500871	Sox6_Sox9	ENSRNOT00000035423|Scrt1|ENSRNOG00000025594|scratch family transcriptional repressor 1 [Source:RGD Symbol%3BAcc:1306236]
rn6_v1_chr8_+_128824508_128824508	0.0487512	Sox6_Sox9	ENSRNOT00000025343|Mobp|ENSRNOG00000018700|myelin-associated oligodendrocyte basic protein [Source:RGD Symbol%3BAcc:3101]
rn6_v1_chr3_+_14990652_14990652	0.0487465	Sox6_Sox9	ENSRNOT00000090735|Dab2ip|ENSRNOG00000055226|DAB2 interacting protein [Source:RGD Symbol%3BAcc:621686]
rn6_v1_chr19_+_39543242_39543242	0.0483437	Sox6_Sox9	ENSRNOT00000018837|Wwp2|ENSRNOG00000012937|WW domain containing E3 ubiquitin protein ligase 2 [Source:RGD Symbol%3BAcc:1310091]
rn6_v1_chr12_-_13668515_13668515	0.0472728	Sox6_Sox9	ENSRNOT00000086847|Fscn1|ENSRNOG00000056585|fascin actin-bundling protein 1 [Source:MGI Symbol%3BAcc:MGI:1352745]
rn6_v1_chr1_-_89042176_89042176	0.0471115	Sox6_Sox9	ENSRNOT00000080842|Kmt2b|ENSRNOG00000055525|lysine methyltransferase 2B [Source:RGD Symbol%3BAcc:7678027]
rn6_v1_chr2_-_62634785_62634785	0.046411	Sox6_Sox9	ENSRNOT00000017937|Pdzd2|ENSRNOG00000013140|PDZ domain containing 2 [Source:RGD Symbol%3BAcc:619958]
rn6_v1_chr4_+_155321553_155321553	0.0462374	Sox6_Sox9	ENSRNOT00000089614|Mfap5|ENSRNOG00000015505|microfibrillar associated protein 5 [Source:RGD Symbol%3BAcc:1307919]
rn6_v1_chr8_+_129617812_129617812	0.0461189	Sox6_Sox9	ENSRNOT00000079085|Ctnnb1|ENSRNOG00000054172|catenin beta 1 [Source:RGD Symbol%3BAcc:70487]
rn6_v1_chr5_+_78483893_78483904	0.0461051	Sox6_Sox9	ENSRNOT00000059183|Rgs3|ENSRNOG00000024501|regulator of G-protein signaling 3 [Source:RGD Symbol%3BAcc:3566]	ENSRNOT00000059181|Rgs3|ENSRNOG00000024501|regulator of G-protein signaling 3 [Source:RGD Symbol%3BAcc:3566]
rn6_v1_chr12_+_40018937_40018937	0.0451119	Sox6_Sox9	ENSRNOT00000001697|Cux2|ENSRNOG00000001259|cut-like homeobox 2 [Source:RGD Symbol%3BAcc:1305967]
rn6_v1_chr3_+_148510779_148510779	0.0450115	Sox6_Sox9	ENSRNOT00000012156|Xkr7|ENSRNOG00000009180|XK related 7 [Source:RGD Symbol%3BAcc:1359224]
rn6_v1_chr10_+_109773890_109773890	0.0442534	Sox6_Sox9	ENSRNOT00000071823|AC131537.1|ENSRNOG00000045985|
rn6_v1_chrX_+_65271366_65271366	0.042427	Sox6_Sox9	ENSRNOT00000093499|Msn|ENSRNOG00000030118|moesin [Source:RGD Symbol%3BAcc:621260]
rn6_v1_chr9_+_62291809_62291809	0.0419893	Sox6_Sox9	ENSRNOT00000090621|Plcl1|ENSRNOG00000032659|phospholipase C-like 1 [Source:RGD Symbol%3BAcc:708420]
rn6_v1_chr16_+_74237001_74237001	0.0419624	Sox6_Sox9	ENSRNOT00000026039|Polb|ENSRNOG00000019150|DNA polymerase beta [Source:RGD Symbol%3BAcc:3363]
rn6_v1_chr4_+_118207862_118207920	0.0418715	Sox6_Sox9	ENSRNOT00000085787|Tia1|ENSRNOG00000016813|TIA1 cytotoxic granule-associated RNA binding protein [Source:RGD Symbol%3BAcc:1305742]	ENSRNOT00000023103|Tia1|ENSRNOG00000016813|TIA1 cytotoxic granule-associated RNA binding protein [Source:RGD Symbol%3BAcc:1305742]
rn6_v1_chr10_+_47930633_47930633	0.0415579	Sox6_Sox9	ENSRNOT00000003515|Grap|ENSRNOG00000002599|GRB2-related adaptor protein [Source:RGD Symbol%3BAcc:1306884]
rn6_v1_chr7_-_15301382_15301382	0.0413411	Sox6_Sox9	ENSRNOT00000081512|Zfp763|ENSRNOG00000057416|zinc finger protein 763 [Source:RGD Symbol%3BAcc:1306264]
rn6_v1_chr17_+_35435079_35435079	0.0409924	Sox6_Sox9	ENSRNOT00000074800|Exoc2|ENSRNOG00000045721|exocyst complex component 2 [Source:RGD Symbol%3BAcc:619961]
rn6_v1_chr16_-_19791832_19791832	0.0406909	Sox6_Sox9	ENSRNOT00000040393|Ushbp1|ENSRNOG00000023485|USH1 protein network component harmonin binding protein 1 [Source:RGD Symbol%3BAcc:1310859]
rn6_v1_chrX_+_62727755_62727755	0.0405453	Sox6_Sox9	ENSRNOT00000077055|Pcyt1b|ENSRNOG00000012358|phosphate cytidylyltransferase 1%2C choline%2C beta [Source:RGD Symbol%3BAcc:708434]
rn6_v1_chr9_-_28972835_28972835	0.0401936	Sox6_Sox9	ENSRNOT00000086967|Rims1|ENSRNOG00000011000|regulating synaptic membrane exocytosis 1 [Source:RGD Symbol%3BAcc:620000]	ENSRNOT00000079684|Rims1|ENSRNOG00000011000|regulating synaptic membrane exocytosis 1 [Source:RGD Symbol%3BAcc:620000]
rn6_v1_chr6_-_125723944_125723944	0.0398001	Sox6_Sox9	ENSRNOT00000007004|Fbln5|ENSRNOG00000050539|fibulin 5 [Source:RGD Symbol%3BAcc:2594]
rn6_v1_chr1_+_264741911_264741911	0.039278	Sox6_Sox9	ENSRNOT00000019956|Sema4g|ENSRNOG00000014650|semaphorin 4G [Source:RGD Symbol%3BAcc:1310436]
rn6_v1_chr2_+_198006316_198006322	0.0380798	Sox6_Sox9	ENSRNOT00000081383|Aph1a|ENSRNOG00000023816|aph-1 homolog A%2C gamma secretase subunit [Source:RGD Symbol%3BAcc:1311546]	ENSRNOT00000056289|Aph1a|ENSRNOG00000023816|aph-1 homolog A%2C gamma secretase subunit [Source:RGD Symbol%3BAcc:1311546]
rn6_v1_chr2_+_188087486_188087486	0.0379596	Sox6_Sox9	ENSRNOT00000027455|Rit1|ENSRNOG00000020232|Ras-like without CAAX 1 [Source:RGD Symbol%3BAcc:1559874]
rn6_v1_chr10_-_103340922_103340922	0.0378735	Sox6_Sox9	ENSRNOT00000004191|Btbd17|ENSRNOG00000003109|BTB domain containing 17 [Source:RGD Symbol%3BAcc:1563331]
rn6_v1_chr18_+_30875011_30875011	0.0375308	Sox6_Sox9	ENSRNOT00000027009|Pcdhga8|ENSRNOG00000027277|protocadherin gamma subfamily A%2C 8 [Source:RGD Symbol%3BAcc:1310676]
rn6_v1_chr10_+_81913689_81913689	0.0364108	Sox6_Sox9	ENSRNOT00000003780|Tob1|ENSRNOG00000002828|transducer of ErbB-2.1 [Source:RGD Symbol%3BAcc:621126]
rn6_v1_chr4_-_125929002_125929002	0.0362919	Sox6_Sox9	ENSRNOT00000083271|Magi1|ENSRNOG00000022060|membrane associated guanylate kinase%2C WW and PDZ domain containing 1 [Source:RGD Symbol%3BAcc:1586025]
rn6_v1_chr1_-_174289647_174289647	0.0355996	Sox6_Sox9	ENSRNOT00000064902|St5|ENSRNOG00000013934|suppression of tumorigenicity 5 [Source:RGD Symbol%3BAcc:1308995]
rn6_v1_chr7_+_12144162_12144162	0.0355263	Sox6_Sox9	ENSRNOT00000077122|Tcf3|ENSRNOG00000051499|transcription factor 3 [Source:RGD Symbol%3BAcc:620914]
rn6_v1_chr18_-_38088457_38088457	0.035391	Sox6_Sox9	ENSRNOT00000077814|Jakmip2|ENSRNOG00000019159|janus kinase and microtubule interacting protein 2 [Source:RGD Symbol%3BAcc:1559742]
rn6_v1_chr4_+_158088505_158088505	0.0353324	Sox6_Sox9	ENSRNOT00000026643|Vwf|ENSRNOG00000019689|von Willebrand factor [Source:RGD Symbol%3BAcc:621759]
rn6_v1_chr3_+_3767394_3767394	0.0352228	Sox6_Sox9	ENSRNOT00000067840|Gpsm1|ENSRNOG00000018666|G-protein signaling modulator 1 [Source:RGD Symbol%3BAcc:628682]
rn6_v1_chr9_-_80167033_80167033	0.03459	Sox6_Sox9	ENSRNOT00000023530|Igfbp5|ENSRNOG00000017206|insulin-like growth factor binding protein 5 [Source:RGD Symbol%3BAcc:2876]
rn6_v1_chr2_-_187401786_187401786	0.0330465	Sox6_Sox9	ENSRNOT00000025624|Hapln2|ENSRNOG00000018870|hyaluronan and proteoglycan link protein 2 [Source:RGD Symbol%3BAcc:621854]
rn6_v1_chr2_+_77868412_77868432	0.0324378	Sox6_Sox9	ENSRNOT00000065897|Myo10|ENSRNOG00000010161|myosin X [Source:RGD Symbol%3BAcc:1307193]	ENSRNOT00000014022|Myo10|ENSRNOG00000010161|myosin X [Source:RGD Symbol%3BAcc:1307193]
rn6_v1_chr13_+_24823488_24823488	0.032188	Sox6_Sox9	ENSRNOT00000019907|Cdh20|ENSRNOG00000014556|cadherin 20 [Source:RGD Symbol%3BAcc:1305438]
rn6_v1_chr5_+_113725717_113725717	0.0320386	Sox6_Sox9	ENSRNOT00000032248|Tek|ENSRNOG00000008587|TEK receptor tyrosine kinase [Source:RGD Symbol%3BAcc:620980]
rn6_v1_chr3_-_72052990_72053049	0.0313122	Sox6_Sox9	ENSRNOT00000064009|Ctnnd1|ENSRNOG00000030790|catenin delta 1 [Source:RGD Symbol%3BAcc:1305643]	ENSRNOT00000081400|Ctnnd1|ENSRNOG00000030790|catenin delta 1 [Source:RGD Symbol%3BAcc:1305643]
rn6_v1_chr18_+_79773608_79773608	0.03125	Sox6_Sox9	ENSRNOT00000088484|Zfp516|ENSRNOG00000016258|zinc finger protein 516 [Source:RGD Symbol%3BAcc:1306817]
rn6_v1_chr10_-_35800120_35800120	0.0310907	Sox6_Sox9	ENSRNOT00000004361|Maml1|ENSRNOG00000003268|mastermind-like transcriptional coactivator 1 [Source:RGD Symbol%3BAcc:1308631]
rn6_v1_chr7_-_120490061_120490061	0.0310712	Sox6_Sox9	ENSRNOT00000016247|Slc16a8|ENSRNOG00000012090|solute carrier family 16 member 8 [Source:RGD Symbol%3BAcc:69282]
rn6_v1_chr20_+_10123651_10123651	0.0304079	Sox6_Sox9	ENSRNOT00000001559|Pde9a|ENSRNOG00000001174|phosphodiesterase 9A [Source:RGD Symbol%3BAcc:621035]
rn6_v1_chr2_-_165739874_165739874	0.0300496	Sox6_Sox9	ENSRNOT00000014384|Kpna4|ENSRNOG00000010768|karyopherin subunit alpha 4 [Source:RGD Symbol%3BAcc:1311483]
rn6_v1_chr18_+_30574627_30574627	0.029795	Sox6_Sox9	ENSRNOT00000060484|Pcdhb19|ENSRNOG00000039469|protocadherin beta 19 [Source:RGD Symbol%3BAcc:1549697]
rn6_v1_chr12_-_29743705_29743705	0.0296374	Sox6_Sox9	ENSRNOT00000001185|Caln1|ENSRNOG00000000886|calneuron 1 [Source:RGD Symbol%3BAcc:1305843]
rn6_v1_chr14_+_84150908_84150908	0.0294702	Sox6_Sox9	ENSRNOT00000005516|Dusp18|ENSRNOG00000024945|dual specificity phosphatase 18 [Source:RGD Symbol%3BAcc:1306929]
rn6_v1_chr7_-_63407241_63407241	0.0294366	Sox6_Sox9	ENSRNOT00000024679|Tbc1d30|ENSRNOG00000023951|TBC1 domain family%2C member 30 [Source:RGD Symbol%3BAcc:1305255]
rn6_v1_chr18_+_30550877_30550877	0.0281254	Sox6_Sox9	ENSRNOT00000027164|LOC108348201|ENSRNOG00000020054|protocadherin beta-7-like [Source:RGD Symbol%3BAcc:11368541]
rn6_v1_chr7_-_18612118_18612147	0.0281194	Sox6_Sox9	ENSRNOT00000078122|Rab11b|ENSRNOG00000007648|RAB11B%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:68369]	ENSRNOT00000010197|Rab11b|ENSRNOG00000007648|RAB11B%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:68369]
rn6_v1_chr5_+_104394119_104394119	0.0278639	Sox6_Sox9	ENSRNOT00000093557|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]	ENSRNOT00000093462|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]
rn6_v1_chr10_-_16731898_16731898	0.0270155	Sox6_Sox9	ENSRNOT00000028186|Crebrf|ENSRNOG00000020769|CREB3 regulatory factor [Source:RGD Symbol%3BAcc:1310862]
rn6_v1_chr15_+_41927241_41927241	0.0262987	Sox6_Sox9	ENSRNOT00000012035|Trim13|ENSRNOG00000009075|tripartite motif-containing 13 [Source:RGD Symbol%3BAcc:1307609]
rn6_v1_chr18_+_30474947_30474947	0.0253941	Sox6_Sox9	ENSRNOT00000027188|Pcdhb9|ENSRNOG00000020072|protocadherin beta 9 [Source:RGD Symbol%3BAcc:1596840]
rn6_v1_chr12_+_30198822_30198822	0.0251088	Sox6_Sox9	ENSRNOT00000041645|Gusb|ENSRNOG00000000913|glucuronidase%2C beta [Source:RGD Symbol%3BAcc:2772]
rn6_v1_chr20_-_38985036_38985036	0.0249878	Sox6_Sox9	ENSRNOT00000001066|Serinc1|ENSRNOG00000029360|serine incorporator 1 [Source:RGD Symbol%3BAcc:727843]
rn6_v1_chr2_+_58448917_58448917	0.0248014	Sox6_Sox9	ENSRNOT00000082562|Ranbp3l|ENSRNOG00000052173|RAN binding protein 3-like [Source:RGD Symbol%3BAcc:1307559]
rn6_v1_chr2_-_104133985_104134101	0.0247583	Sox6_Sox9	ENSRNOT00000088167|Pde7a|ENSRNOG00000013048|phosphodiesterase 7A [Source:RGD Symbol%3BAcc:68391]	ENSRNOT00000067725|Pde7a|ENSRNOG00000013048|phosphodiesterase 7A [Source:RGD Symbol%3BAcc:68391]
rn6_v1_chr14_+_11199404_11199404	0.0244771	Sox6_Sox9	ENSRNOT00000003106|Hnrnpdl|ENSRNOG00000002270|heterogeneous nuclear ribonucleoprotein D-like [Source:RGD Symbol%3BAcc:1309950]
rn6_v1_chr4_-_51199570_51199570	0.024459	Sox6_Sox9	ENSRNOT00000010788|Slc13a1|ENSRNOG00000008121|solute carrier family 13 member 1 [Source:RGD Symbol%3BAcc:61919]
rn6_v1_chr18_+_30909490_30909490	0.0244097	Sox6_Sox9	ENSRNOT00000026967|Pcdhgb8|ENSRNOG00000027220|protocadherin gamma subfamily B%2C 8 [Source:RGD Symbol%3BAcc:1307432]
rn6_v1_chr4_+_78240385_78240385	0.0243892	Sox6_Sox9	ENSRNOT00000011041|Zfp775|ENSRNOG00000008362|zinc finger protein 775 [Source:RGD Symbol%3BAcc:1304910]
rn6_v1_chr6_-_105518725_105518748	0.0242871	Sox6_Sox9	ENSRNOT00000009693|Map3k9|ENSRNOG00000007271|mitogen-activated protein kinase kinase kinase 9 [Source:RGD Symbol%3BAcc:1562149]	ENSRNOT00000083488|Map3k9|ENSRNOG00000007271|mitogen-activated protein kinase kinase kinase 9 [Source:RGD Symbol%3BAcc:1562149]
rn6_v1_chr8_-_39551700_39551700	0.0242092	Sox6_Sox9	ENSRNOT00000091894|Pknox2|ENSRNOG00000028856|PBX/knotted 1 homeobox 2 [Source:RGD Symbol%3BAcc:1590611]	ENSRNOT00000076025|Pknox2|ENSRNOG00000028856|PBX/knotted 1 homeobox 2 [Source:RGD Symbol%3BAcc:1590611]
rn6_v1_chr4_-_184096806_184096806	0.0241929	Sox6_Sox9	ENSRNOT00000055433|LOC100362344|ENSRNOG00000036910|mKIAA1238 protein-like [Source:RGD Symbol%3BAcc:2318342]
rn6_v1_chr19_-_43714418_43714418	0.0241011	Sox6_Sox9	ENSRNOT00000047179|Wdr59|ENSRNOG00000018967|WD repeat domain 59 [Source:RGD Symbol%3BAcc:1592213]
rn6_v1_chr4_-_115157263_115157263	0.0236601	Sox6_Sox9	ENSRNOT00000015296|Tet3|ENSRNOG00000011387|tet methylcytosine dioxygenase 3 [Source:RGD Symbol%3BAcc:1590584]
rn6_v1_chr13_-_72789841_72789841	0.0235326	Sox6_Sox9	ENSRNOT00000004694|Mr1|ENSRNOG00000003522|major histocompatibility complex%2C class I-related [Source:RGD Symbol%3BAcc:1593291]
rn6_v1_chr1_+_65564173_65564173	0.0232337	Sox6_Sox9	ENSRNOT00000038860|Zbtb45|ENSRNOG00000027459|zinc finger and BTB domain containing 45 [Source:RGD Symbol%3BAcc:1310920]
rn6_v1_chr5_-_124642569_124642569	0.0227739	Sox6_Sox9	ENSRNOT00000010680|Prkaa2|ENSRNOG00000007706|protein kinase AMP-activated catalytic subunit alpha 2 [Source:RGD Symbol%3BAcc:620893]
rn6_v1_chr3_-_11417546_11417546	0.0226581	Sox6_Sox9	ENSRNOT00000018776|Lcn2|ENSRNOG00000013973|lipocalin 2 [Source:RGD Symbol%3BAcc:69408]
rn6_v1_chr6_+_111180108_111180108	0.0224252	Sox6_Sox9	ENSRNOT00000082027|Gstz1|ENSRNOG00000047708|glutathione S-transferase zeta 1 [Source:RGD Symbol%3BAcc:1589363]
rn6_v1_chr10_+_36715565_36715565	0.0216906	Sox6_Sox9	ENSRNOT00000005048|Clk4|ENSRNOG00000003714|CDC-like kinase 4 [Source:RGD Symbol%3BAcc:1310274]
rn6_v1_chr8_-_111101416_111101416	0.0215548	Sox6_Sox9	ENSRNOT00000084413|Cep63|ENSRNOG00000008410|centrosomal protein 63 [Source:RGD Symbol%3BAcc:1561183]
rn6_v1_chr14_-_36208278_36208373	0.0209405	Sox6_Sox9	ENSRNOT00000045050|Fip1l1|ENSRNOG00000002275|factor interacting with PAPOLA and CPSF1 [Source:RGD Symbol%3BAcc:1309336]	ENSRNOT00000088448|Fip1l1|ENSRNOG00000002275|factor interacting with PAPOLA and CPSF1 [Source:RGD Symbol%3BAcc:1309336]
rn6_v1_chr2_+_123617794_123617794	0.0206816	Sox6_Sox9	ENSRNOT00000080632|RGD1307100|ENSRNOG00000038436|similar to RIKEN cDNA D630029K19 [Source:RGD Symbol%3BAcc:1307100]
rn6_v1_chr13_+_113692131_113692131	0.0205329	Sox6_Sox9	ENSRNOT00000057160|Cd34|ENSRNOG00000045558|CD34 molecule [Source:RGD Symbol%3BAcc:1306863]
rn6_v1_chr1_+_221236773_221236773	0.0202155	Sox6_Sox9	ENSRNOT00000051979|Slc25a45|ENSRNOG00000030616|solute carrier family 25%2C member 45 [Source:RGD Symbol%3BAcc:1589953]
rn6_v1_chr6_+_134844676_134844676	0.0200743	Sox6_Sox9	ENSRNOT00000007595|Ppp2r5c|ENSRNOG00000004973|protein phosphatase 2%2C regulatory subunit B'%2C gamma [Source:RGD Symbol%3BAcc:1585097]
rn6_v1_chr2_-_117454769_117454769	0.02004	Sox6_Sox9	ENSRNOT00000068381|Mecom|ENSRNOG00000012645|MDS1 and EVI1 complex locus [Source:RGD Symbol%3BAcc:1310997]
rn6_v1_chr15_-_29369504_29369504	0.0199546	Sox6_Sox9	ENSRNOT00000060297|AABR07017624.1|ENSRNOG00000048808|
rn6_v1_chr1_-_126211439_126211439	0.019622	Sox6_Sox9	ENSRNOT00000014988|Tjp1|ENSRNOG00000011077|tight junction protein 1 [Source:RGD Symbol%3BAcc:1306305]
rn6_v1_chr2_+_205553163_205553163	0.0186701	Sox6_Sox9	ENSRNOT00000039572|Nras|ENSRNOG00000023079|neuroblastoma RAS viral oncogene homolog [Source:RGD Symbol%3BAcc:3205]
rn6_v1_chr7_+_66717267_66717267	0.0183367	Sox6_Sox9	ENSRNOT00000005654|Mon2|ENSRNOG00000004185|MON2 homolog%2C regulator of endosome-to-Golgi trafficking [Source:RGD Symbol%3BAcc:1308808]
rn6_v1_chr9_-_16795887_16795887	0.018194	Sox6_Sox9	ENSRNOT00000071609|Cd79al|ENSRNOG00000049925|Cd79a molecule-like [Source:RGD Symbol%3BAcc:1598036]
rn6_v1_chr9_-_28973246_28973246	0.0177166	Sox6_Sox9	ENSRNOT00000091865|Rims1|ENSRNOG00000011000|regulating synaptic membrane exocytosis 1 [Source:RGD Symbol%3BAcc:620000]	ENSRNOT00000015453|Rims1|ENSRNOG00000011000|regulating synaptic membrane exocytosis 1 [Source:RGD Symbol%3BAcc:620000]
rn6_v1_chr18_+_76559811_76559811	0.017691	Sox6_Sox9	ENSRNOT00000084621|Pard6g|ENSRNOG00000055157|par-6 family cell polarity regulator gamma [Source:RGD Symbol%3BAcc:1305016]
rn6_v1_chr10_+_19366793_19366793	0.0173526	Sox6_Sox9	ENSRNOT00000050610|Fam196b|ENSRNOG00000032329|family with sequence similarity 196%2C member B [Source:RGD Symbol%3BAcc:2320105]
rn6_v1_chr4_-_164051812_164051812	0.0171997	Sox6_Sox9	ENSRNOT00000085719|AABR07062183.1|ENSRNOG00000058993|
rn6_v1_chr1_-_167911961_167911961	0.0168182	Sox6_Sox9	ENSRNOT00000025097|Olr59|ENSRNOG00000018606|olfactory receptor 59 [Source:RGD Symbol%3BAcc:628858]
rn6_v1_chr8_+_117620317_117620317	0.0166849	Sox6_Sox9	ENSRNOT00000084220|Celsr3|ENSRNOG00000053889|cadherin%2C EGF LAG seven-pass G-type receptor 3 [Source:RGD Symbol%3BAcc:621787]
rn6_v1_chrX_+_65566047_65566047	0.0166759	Sox6_Sox9	ENSRNOT00000092103|Heph|ENSRNOG00000012294|hephaestin [Source:RGD Symbol%3BAcc:71060]
rn6_v1_chr10_-_104482838_104482838	0.0156094	Sox6_Sox9	ENSRNOT00000007246|Recql5|ENSRNOG00000005107|RecQ like helicase 5 [Source:RGD Symbol%3BAcc:1310823]
rn6_v1_chr2_+_248715281_248715281	0.0155577	Sox6_Sox9	ENSRNOT00000089648|Gtf2b|ENSRNOG00000011135|general transcription factor IIB [Source:RGD Symbol%3BAcc:619735]
rn6_v1_chr1_+_267359830_267359830	0.0150138	Sox6_Sox9	ENSRNOT00000015495|Slk|ENSRNOG00000011339|STE20-like kinase [Source:RGD Symbol%3BAcc:3780]
rn6_v1_chr4_-_72143748_72143748	0.0149132	Sox6_Sox9	ENSRNOT00000024428|Tcaf1|ENSRNOG00000017911|TRPM8 channel-associated factor 1 [Source:RGD Symbol%3BAcc:1565474]
rn6_v1_chr15_-_2731462_2731462	0.0145765	Sox6_Sox9	ENSRNOT00000018023|Samd8|ENSRNOG00000013236|sterile alpha motif domain containing 8 [Source:RGD Symbol%3BAcc:1306447]
rn6_v1_chr4_-_77489535_77489535	0.014573	Sox6_Sox9	ENSRNOT00000008728|Pdia4|ENSRNOG00000006228|protein disulfide isomerase family A%2C member 4 [Source:RGD Symbol%3BAcc:619835]
rn6_v1_chr6_-_1622196_1622196	0.0142106	Sox6_Sox9	ENSRNOT00000007492|Prkd3|ENSRNOG00000005289|protein kinase D3 [Source:RGD Symbol%3BAcc:1310236]
rn6_v1_chr8_-_87158368_87158368	0.0140796	Sox6_Sox9	ENSRNOT00000077071|Col12a1|ENSRNOG00000058470|collagen type XII alpha 1 chain [Source:RGD Symbol%3BAcc:2374]
rn6_v1_chr5_-_79222687_79222687	0.0138533	Sox6_Sox9	ENSRNOT00000010516|Akna|ENSRNOG00000008005|AT-hook transcription factor [Source:RGD Symbol%3BAcc:1308202]
rn6_v1_chr16_-_71203609_71203609	0.0138151	Sox6_Sox9	ENSRNOT00000088458|Nsd3|ENSRNOG00000015621|nuclear receptor binding SET domain protein 3 [Source:RGD Symbol%3BAcc:1308980]
rn6_v1_chr9_-_15582556_15582556	0.0137268	Sox6_Sox9	ENSRNOT00000020516|RGD1561662|ENSRNOG00000015297|similar to AI661453 protein [Source:RGD Symbol%3BAcc:1561662]
rn6_v1_chr6_+_147876557_147876557	0.013666	Sox6_Sox9	ENSRNOT00000080090|Tmem196|ENSRNOG00000037435|transmembrane protein 196 [Source:RGD Symbol%3BAcc:1562527]
rn6_v1_chr1_+_13261876_13261876	0.0134252	Sox6_Sox9	ENSRNOT00000090703|Reps1|ENSRNOG00000059224|RALBP1 associated Eps domain containing 1 [Source:RGD Symbol%3BAcc:1307131]
rn6_v1_chr5_+_160095427_160095427	0.0127435	Sox6_Sox9	ENSRNOT00000077609|AABR07050298.1|ENSRNOG00000060917|
rn6_v1_chr1_-_185569190_185569190	0.0124585	Sox6_Sox9	ENSRNOT00000090773|RGD1311703|ENSRNOG00000053659|similar to sid2057p [Source:RGD Symbol%3BAcc:1311703]
rn6_v1_chr16_+_23553647_23553647	0.0122012	Sox6_Sox9	ENSRNOT00000041994|Psd3|ENSRNOG00000013884|pleckstrin and Sec7 domain containing 3 [Source:RGD Symbol%3BAcc:1559968]
rn6_v1_chr20_+_47494424_47494424	0.0121283	Sox6_Sox9	ENSRNOT00000087718|Sec63|ENSRNOG00000000314|SEC63 homolog%2C protein translocation regulator [Source:RGD Symbol%3BAcc:1304984]
rn6_v1_chr18_+_60392376_60392376	0.0120361	Sox6_Sox9	ENSRNOT00000023890|Nedd4l|ENSRNOG00000017610|neural precursor cell expressed%2C developmentally down-regulated 4-like%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:735047]
rn6_v1_chr6_+_44225233_44225233	0.0119913	Sox6_Sox9	ENSRNOT00000066593|Kidins220|ENSRNOG00000023176|kinase D-interacting substrate 220 [Source:RGD Symbol%3BAcc:619949]
rn6_v1_chr8_+_76400341_76400373	0.0118623	Sox6_Sox9	ENSRNOT00000087382|Bnip2|ENSRNOG00000056024|BCL2/adenovirus E1B interacting protein 2 [Source:RGD Symbol%3BAcc:1308944]	ENSRNOT00000081072|Bnip2|ENSRNOG00000056024|BCL2/adenovirus E1B interacting protein 2 [Source:RGD Symbol%3BAcc:1308944]
rn6_v1_chr5_-_173312023_173312023	0.0113422	Sox6_Sox9	ENSRNOT00000026671|Tas1r3|ENSRNOG00000019589|taste 1 receptor member 3 [Source:RGD Symbol%3BAcc:620539]
rn6_v1_chr8_+_117574161_117574161	0.0113044	Sox6_Sox9	ENSRNOT00000077078|Ip6k2|ENSRNOG00000020361|inositol hexakisphosphate kinase 2 [Source:RGD Symbol%3BAcc:620529]
rn6_v1_chr18_+_30387937_30387937	0.0112517	Sox6_Sox9	ENSRNOT00000027210|Pcdhb4|ENSRNOG00000027469|protocadherin beta 4 [Source:RGD Symbol%3BAcc:1308912]
rn6_v1_chr20_-_28263037_28263037	0.0111629	Sox6_Sox9	ENSRNOT00000030348|Edar|ENSRNOG00000028598|ectodysplasin-A receptor [Source:RGD Symbol%3BAcc:1561714]
rn6_v1_chr3_+_92640752_92640752	0.0109497	Sox6_Sox9	ENSRNOT00000007604|Slc1a2|ENSRNOG00000005479|solute carrier family 1 member 2 [Source:RGD Symbol%3BAcc:3697]
rn6_v1_chr7_-_143217535_143217535	0.0104484	Sox6_Sox9	ENSRNOT00000088316|Kb15|ENSRNOG00000009105|type II keratin Kb15 [Source:RGD Symbol%3BAcc:1565564]
rn6_v1_chr4_+_7122890_7122916	0.010219	Sox6_Sox9	ENSRNOT00000076339|Abcf2|ENSRNOG00000010609|ATP binding cassette subfamily F member 2 [Source:RGD Symbol%3BAcc:1304942]	ENSRNOT00000076418|Abcf2|ENSRNOG00000010609|ATP binding cassette subfamily F member 2 [Source:RGD Symbol%3BAcc:1304942]	ENSRNOT00000014718|Abcf2|ENSRNOG00000010609|ATP binding cassette subfamily F member 2 [Source:RGD Symbol%3BAcc:1304942]
rn6_v1_chr19_-_38344845_38344845	0.0101849	Sox6_Sox9	ENSRNOT00000072666|AABR07043748.1|ENSRNOG00000046621|
rn6_v1_chr2_+_231884337_231884337	0.0100815	Sox6_Sox9	ENSRNOT00000014695|Zgrf1|ENSRNOG00000036980|zinc finger%2C GRF-type containing 1 [Source:RGD Symbol%3BAcc:1305834]
rn6_v1_chr8_-_48634797_48634797	0.00999589	Sox6_Sox9	ENSRNOT00000012868|Hinfp|ENSRNOG00000009499|histone H4 transcription factor [Source:RGD Symbol%3BAcc:1311492]
rn6_v1_chr13_+_96219853_96219853	0.0095754	Sox6_Sox9	ENSRNOT00000006154|Cox20|ENSRNOG00000004553|COX20 cytochrome C oxidase assembly factor [Source:RGD Symbol%3BAcc:1309105]
rn6_v1_chr14_-_102293677_102293677	0.00952846	Sox6_Sox9	ENSRNOT00000008135|Etaa1|ENSRNOG00000006185|Ewing tumor-associated antigen 1 [Source:RGD Symbol%3BAcc:1587340]
rn6_v1_chr3_+_176102351_176102351	0.00896401	Sox6_Sox9	ENSRNOT00000013105|Col9a3|ENSRNOG00000009531|collagen type IX alpha 3 chain [Source:RGD Symbol%3BAcc:1310255]
rn6_v1_chr7_-_136853154_136853154	0.00889034	Sox6_Sox9	ENSRNOT00000087376|Nell2|ENSRNOG00000006235|neural EGFL like 2 [Source:RGD Symbol%3BAcc:620999]
rn6_v1_chr20_+_13670066_13670066	0.00889016	Sox6_Sox9	ENSRNOT00000031400|LOC103694874|ENSRNOG00000028344|stromelysin-3 [Source:RGD Symbol%3BAcc:9106139]
rn6_v1_chr6_-_51019407_51019407	0.00871902	Sox6_Sox9	ENSRNOT00000011659|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr13_+_47380406_47380406	0.00868086	Sox6_Sox9	ENSRNOT00000050289|Lsm6|ENSRNOG00000030374|LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1561937]
rn6_v1_chr3_+_121725859_121725859	0.0085991	Sox6_Sox9	ENSRNOT00000025294|Slc20a1|ENSRNOG00000018567|solute carrier family 20 member 1 [Source:RGD Symbol%3BAcc:621079]
rn6_v1_chr7_-_117440342_117440342	0.00826582	Sox6_Sox9	ENSRNOT00000018528|Tssk5|ENSRNOG00000013753|testis-specific serine kinase 5 [Source:RGD Symbol%3BAcc:1308613]
rn6_v1_chr10_+_11877903_11877979	0.00648968	Sox6_Sox9	ENSRNOT00000076532|RGD1561796|ENSRNOG00000007268|RGD1561796 [Source:RGD Symbol%3BAcc:1561796]	ENSRNOT00000075890|RGD1561796|ENSRNOG00000007268|RGD1561796 [Source:RGD Symbol%3BAcc:1561796]
rn6_v1_chr7_+_120891940_120891940	0.0064274	Sox6_Sox9	ENSRNOT00000018787|Cby1|ENSRNOG00000013892|chibby family member 1%2C beta catenin antagonist [Source:RGD Symbol%3BAcc:708481]
rn6_v1_chr1_+_264059374_264059374	0.00630114	Sox6_Sox9	ENSRNOT00000075397|Scd2|ENSRNOG00000046005|stearoyl-Coenzyme A desaturase 2 [Source:RGD Symbol%3BAcc:621177]
rn6_v1_chr10_-_45534570_45534570	0.00578005	Sox6_Sox9	ENSRNOT00000058362|Gjc2|ENSRNOG00000038328|gap junction protein%2C gamma 2 [Source:RGD Symbol%3BAcc:1562712]
rn6_v1_chr6_-_72596446_72596446	0.00552613	Sox6_Sox9	ENSRNOT00000008459|Hectd1|ENSRNOG00000006905|HECT domain E3 ubiquitin protein ligase 1 [Source:RGD Symbol%3BAcc:1561653]
rn6_v1_chr7_+_116632506_116632506	0.00489666	Sox6_Sox9	ENSRNOT00000009811|Gpihbp1|ENSRNOG00000007475|glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 [Source:RGD Symbol%3BAcc:1564237]
rn6_v1_chr10_+_37458452_37458452	0.0045297	Sox6_Sox9	ENSRNOT00000079411|Cdkl3|ENSRNOG00000059485|cyclin-dependent kinase-like 3 [Source:RGD Symbol%3BAcc:619874]
rn6_v1_chr3_+_123031307_123031307	0.00445277	Sox6_Sox9	ENSRNOT00000080379|Ptpra|ENSRNOG00000021223|protein tyrosine phosphatase%2C receptor type%2C A [Source:RGD Symbol%3BAcc:3450]
rn6_v1_chr1_+_229416489_229416489	0.00372107	Sox6_Sox9	ENSRNOT00000028617|Olr336|ENSRNOG00000021078|olfactory receptor 336 [Source:RGD Symbol%3BAcc:1333328]
rn6_v1_chr13_+_89797800_89797800	0.00368853	Sox6_Sox9	ENSRNOT00000005811|Usf1|ENSRNOG00000004255|upstream transcription factor 1 [Source:RGD Symbol%3BAcc:620974]
rn6_v1_chr5_+_148781222_148781222	0.0034482	Sox6_Sox9	ENSRNOT00000015831|Pum1|ENSRNOG00000011709|pumilio RNA-binding family member 1 [Source:RGD Symbol%3BAcc:1307190]
rn6_v1_chr13_-_111581018_111581019	0.00337441	Sox6_Sox9	ENSRNOT00000083072|Sertad4|ENSRNOG00000060773|SERTA domain containing 4 [Source:RGD Symbol%3BAcc:1565408]	ENSRNOT00000077981|Sertad4|ENSRNOG00000060773|SERTA domain containing 4 [Source:RGD Symbol%3BAcc:1565408]
rn6_v1_chr1_-_200696928_200696928	0.00305532	Sox6_Sox9	ENSRNOT00000068183|Fgfr2|ENSRNOG00000016374|fibroblast growth factor receptor 2 [Source:RGD Symbol%3BAcc:2611]	ENSRNOT00000022253|Fgfr2|ENSRNOG00000016374|fibroblast growth factor receptor 2 [Source:RGD Symbol%3BAcc:2611]	ENSRNOT00000065448|Fgfr2|ENSRNOG00000016374|fibroblast growth factor receptor 2 [Source:RGD Symbol%3BAcc:2611]	ENSRNOT00000022331|Fgfr2|ENSRNOG00000016374|fibroblast growth factor receptor 2 [Source:RGD Symbol%3BAcc:2611]
rn6_v1_chr19_+_55594831_55594831	0.00278872	Sox6_Sox9	ENSRNOT00000020313|Acsf3|ENSRNOG00000015077|acyl-CoA synthetase family member 3 [Source:RGD Symbol%3BAcc:1586037]
rn6_v1_chr10_+_75365822_75365822	0.00261185	Sox6_Sox9	ENSRNOT00000055705|Vezf1|ENSRNOG00000009819|vascular endothelial zinc finger 1 [Source:RGD Symbol%3BAcc:1308058]
rn6_v1_chr14_+_83341851_83341851	0.00230949	Sox6_Sox9	ENSRNOT00000086090|Pisd|ENSRNOG00000018319|phosphatidylserine decarboxylase [Source:RGD Symbol%3BAcc:1596729]
rn6_v1_chr3_+_63510293_63510293	0.0021291	Sox6_Sox9	ENSRNOT00000058093|Dfnb59|ENSRNOG00000038165|deafness%2C autosomal recessive 59 [Source:RGD Symbol%3BAcc:1587131]
rn6_v1_chr3_-_168018410_168018410	0.00210907	Sox6_Sox9	ENSRNOT00000087579|Bcas1|ENSRNOG00000012906|breast carcinoma amplified sequence 1 [Source:RGD Symbol%3BAcc:628644]
rn6_v1_chr11_+_74834050_74834050	0.00169386	Sox6_Sox9	ENSRNOT00000002333|Atp13a4|ENSRNOG00000001714|ATPase 13A4 [Source:RGD Symbol%3BAcc:1306927]
rn6_v1_chr3_+_146695344_146695344	0.00163323	Sox6_Sox9	ENSRNOT00000010955|Gins1|ENSRNOG00000008091|GINS complex subunit 1 [Source:RGD Symbol%3BAcc:1562246]
rn6_v1_chr13_-_68858781_68858809	0.00154846	Sox6_Sox9	ENSRNOT00000065944|Rnf2|ENSRNOG00000002454|ring finger protein 2 [Source:RGD Symbol%3BAcc:1305491]	ENSRNOT00000092053|Rnf2|ENSRNOG00000002454|ring finger protein 2 [Source:RGD Symbol%3BAcc:1305491]
rn6_v1_chr14_+_44413636_44413636	0.00135476	Sox6_Sox9	ENSRNOT00000003552|Smim14|ENSRNOG00000002553|small integral membrane protein 14 [Source:RGD Symbol%3BAcc:1311122]
rn6_v1_chr13_-_77959089_77959089	0.00130065	Sox6_Sox9	ENSRNOT00000003586|Cacybp|ENSRNOG00000002572|calcyclin binding protein [Source:RGD Symbol%3BAcc:1303146]
rn6_v1_chr6_+_72092194_72092194	0.00118426	Sox6_Sox9	ENSRNOT00000005670|G2e3|ENSRNOG00000004232|G2/M-phase specific E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1310263]
rn6_v1_chr3_-_55951584_55951584	0.000830407	Sox6_Sox9	ENSRNOT00000036585|Fastkd1|ENSRNOG00000024335|FAST kinase domains 1 [Source:RGD Symbol%3BAcc:1563531]
rn6_v1_chr5_+_36566783_36566783	0.00068045	Sox6_Sox9	ENSRNOT00000077650|Fbxl4|ENSRNOG00000005641|F-box and leucine-rich repeat protein 4 [Source:RGD Symbol%3BAcc:1305724]
rn6_v1_chr8_+_131998778_131998778	0.000300781	Sox6_Sox9	ENSRNOT00000040625|Zfp105|ENSRNOG00000032919|zinc finger protein 105 [Source:RGD Symbol%3BAcc:1309905]
