rn6_v1_chr6_-_115616766_115616859	0.0990184	Thra	ENSRNOT00000006143|Sel1l|ENSRNOG00000004464|SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol%3BAcc:620147]	ENSRNOT00000045870|Sel1l|ENSRNOG00000004464|SEL1L ERAD E3 ligase adaptor subunit [Source:RGD Symbol%3BAcc:620147]
rn6_v1_chr3_+_95715193_95715193	0.0792103	Thra	ENSRNOT00000089525|Pax6|ENSRNOG00000004410|paired box 6 [Source:RGD Symbol%3BAcc:3258]
rn6_v1_chr20_+_3827367_3827367	0.0789646	Thra	ENSRNOT00000079967|Rxrb|ENSRNOG00000000464|retinoid X receptor beta [Source:RGD Symbol%3BAcc:3611]
rn6_v1_chr1_+_82174451_82174451	0.0685645	Thra	ENSRNOT00000027783|Tmem145|ENSRNOG00000020489|transmembrane protein 145 [Source:RGD Symbol%3BAcc:1595911]
rn6_v1_chr10_+_14547172_14547172	0.0571914	Thra	ENSRNOT00000092043|Unkl|ENSRNOG00000054605|unkempt family like zinc finger [Source:RGD Symbol%3BAcc:1565247]
rn6_v1_chr5_+_147069616_147069616	0.0532312	Thra	ENSRNOT00000072908|Trim62|ENSRNOG00000049496|tripartite motif-containing 62 [Source:RGD Symbol%3BAcc:1586169]
rn6_v1_chr8_-_61919874_61919874	0.0524518	Thra	ENSRNOT00000064830|RGD1305464|ENSRNOG00000018689|similar to human chromosome 15 open reading frame 39 [Source:RGD Symbol%3BAcc:1305464]
rn6_v1_chr6_+_110624856_110624856	0.0518175	Thra	ENSRNOT00000014017|Vash1|ENSRNOG00000010457|vasohibin 1 [Source:RGD Symbol%3BAcc:1564082]
rn6_v1_chr14_+_104250617_104250617	0.0504322	Thra	ENSRNOT00000079874|Spred2|ENSRNOG00000004888|sprouty-related%2C EVH1 domain containing 2 [Source:RGD Symbol%3BAcc:1309304]
rn6_v1_chrX_-_159841072_159841072	0.0476235	Thra	ENSRNOT00000001158|Arhgef6|ENSRNOG00000000869|Rac/Cdc42 guanine nucleotide exchange factor 6 [Source:RGD Symbol%3BAcc:1359674]
rn6_v1_chr3_+_80676820_80676820	0.047314	Thra	ENSRNOT00000084809|Ambra1|ENSRNOG00000017422|autophagy and beclin 1 regulator 1 [Source:RGD Symbol%3BAcc:621330]
rn6_v1_chr4_+_153385205_153385205	0.0444329	Thra	ENSRNOT00000016561|Bcl2l13|ENSRNOG00000012394|BCL2 like 13 [Source:RGD Symbol%3BAcc:1306985]
rn6_v1_chr7_-_12424367_12424367	0.0441906	Thra	ENSRNOT00000060698|Midn|ENSRNOG00000015434|midnolin [Source:RGD Symbol%3BAcc:1309629]
rn6_v1_chr20_+_5008508_5008508	0.0403152	Thra	ENSRNOT00000001153|Vwa7|ENSRNOG00000000860|von Willebrand factor A domain containing 7 [Source:RGD Symbol%3BAcc:1303137]
rn6_v1_chr6_+_112203679_112203679	0.0342173	Thra	ENSRNOT00000031205|Nrxn3|ENSRNOG00000047574|neurexin 3 [Source:RGD Symbol%3BAcc:620212]
rn6_v1_chr11_+_64601029_64601029	0.0338975	Thra	ENSRNOT00000004138|Arhgap31|ENSRNOG00000003088|Rho GTPase activating protein 31 [Source:RGD Symbol%3BAcc:1306093]
rn6_v1_chr8_-_47339343_47339343	0.0335372	Thra	ENSRNOT00000081007|Arhgef12|ENSRNOG00000008924|Rho guanine nucleotide exchange factor 12 [Source:RGD Symbol%3BAcc:1305111]
rn6_v1_chr1_-_214414763_214414897	0.0324616	Thra	ENSRNOT00000025240|LOC100911440|ENSRNOG00000049944|mitochondrial glutamate carrier 1-like [Source:RGD Symbol%3BAcc:6492572]	ENSRNOT00000077776|LOC100911440|ENSRNOG00000049944|mitochondrial glutamate carrier 1-like [Source:RGD Symbol%3BAcc:6492572]
rn6_v1_chr6_+_146784915_146784915	0.0314	Thra	ENSRNOT00000008362|Sp8|ENSRNOG00000005943|Sp8 transcription factor [Source:RGD Symbol%3BAcc:1307619]
rn6_v1_chr8_+_116332796_116332796	0.0306894	Thra	ENSRNOT00000021408|Hyal1|ENSRNOG00000015858|hyaluronoglucosaminidase 1 [Source:RGD Symbol%3BAcc:1303060]
rn6_v1_chr1_+_1784078_1784078	0.0303364	Thra	ENSRNOT00000020098|Lats1|ENSRNOG00000014916|large tumor suppressor kinase 1 [Source:RGD Symbol%3BAcc:1564085]
rn6_v1_chr13_-_35668968_35668968	0.0292907	Thra	ENSRNOT00000042862|Epb41l5|ENSRNOG00000002538|erythrocyte membrane protein band 4.1 like 5 [Source:RGD Symbol%3BAcc:1311366]	ENSRNOT00000003428|Epb41l5|ENSRNOG00000002538|erythrocyte membrane protein band 4.1 like 5 [Source:RGD Symbol%3BAcc:1311366]
rn6_v1_chr5_+_116421894_116421900	0.0279186	Thra	ENSRNOT00000080577|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]	ENSRNOT00000086628|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]	ENSRNOT00000004017|Nfia|ENSRNOG00000006966|nuclear factor I/A [Source:RGD Symbol%3BAcc:3170]
rn6_v1_chr6_-_135829953_135830086	0.0275981	Thra	ENSRNOT00000080623|Cdc42bpb|ENSRNOG00000009675|CDC42 binding protein kinase beta [Source:RGD Symbol%3BAcc:621753]	ENSRNOT00000039059|Cdc42bpb|ENSRNOG00000009675|CDC42 binding protein kinase beta [Source:RGD Symbol%3BAcc:621753]
rn6_v1_chr10_+_72486152_72486152	0.0268902	Thra	ENSRNOT00000004193|RGD1310166|ENSRNOG00000003143|similar to Chromodomain-helicase-DNA-binding protein 1 (CHD-1) [Source:RGD Symbol%3BAcc:1310166]
rn6_v1_chr10_-_59762644_59762644	0.025036	Thra	ENSRNOT00000083390|Ctns|ENSRNOG00000028688|cystinosin%2C lysosomal cystine transporter [Source:RGD Symbol%3BAcc:1308466]
rn6_v1_chr5_-_57632177_57632182	0.0239653	Thra	ENSRNOT00000080787|Ubap2|ENSRNOG00000052087|ubiquitin-associated protein 2 [Source:RGD Symbol%3BAcc:1311717]	ENSRNOT00000092581|Ubap2|ENSRNOG00000052087|ubiquitin-associated protein 2 [Source:RGD Symbol%3BAcc:1311717]
rn6_v1_chr15_-_55209342_55209342	0.0237658	Thra	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr7_-_33916338_33916338	0.0226662	Thra	ENSRNOT00000005492|Cfap54|ENSRNOG00000029837|cilia and flagella associated protein 54 [Source:RGD Symbol%3BAcc:1589470]
rn6_v1_chr16_+_19044607_19044607	0.0225789	Thra	ENSRNOT00000085462|Med26|ENSRNOG00000012270|mediator complex subunit 26 [Source:RGD Symbol%3BAcc:1309524]
rn6_v1_chr12_+_24761210_24761210	0.0214399	Thra	ENSRNOT00000002003|Cldn4|ENSRNOG00000001476|claudin 4 [Source:RGD Symbol%3BAcc:1307932]
rn6_v1_chr5_+_113725717_113725717	0.0213833	Thra	ENSRNOT00000032248|Tek|ENSRNOG00000008587|TEK receptor tyrosine kinase [Source:RGD Symbol%3BAcc:620980]
rn6_v1_chrX_-_157095274_157095274	0.0211308	Thra	ENSRNOT00000084088|Abcd1|ENSRNOG00000056524|ATP binding cassette subfamily D member 1 [Source:RGD Symbol%3BAcc:1562128]
rn6_v1_chr10_+_59000397_59000397	0.0204735	Thra	ENSRNOT00000021134|Mybbp1a|ENSRNOG00000015236|MYB binding protein 1a [Source:RGD Symbol%3BAcc:62062]
rn6_v1_chr3_-_2727616_2727616	0.0192995	Thra	ENSRNOT00000061904|C8g|ENSRNOG00000028701|complement C8 gamma chain [Source:RGD Symbol%3BAcc:1309074]
rn6_v1_chr1_+_88922433_88922433	0.0190044	Thra	ENSRNOT00000045212|Nphs1|ENSRNOG00000020873|NPHS1 nephrin [Source:RGD Symbol%3BAcc:620460]
rn6_v1_chr5_-_160219812_160219812	0.0187536	Thra	ENSRNOT00000016333|Plekhm2|ENSRNOG00000012163|pleckstrin homology and RUN domain containing M2 [Source:RGD Symbol%3BAcc:1307005]
rn6_v1_chrX_+_68752597_68752597	0.018625	Thra	ENSRNOT00000077039|Stard8|ENSRNOG00000033883|StAR-related lipid transfer domain containing 8 [Source:RGD Symbol%3BAcc:1560770]
rn6_v1_chr9_+_111597037_111597037	0.0185766	Thra	ENSRNOT00000021758|Fer|ENSRNOG00000015898|FER tyrosine kinase [Source:RGD Symbol%3BAcc:1306273]
rn6_v1_chr11_+_84745904_84745904	0.0179056	Thra	ENSRNOT00000002617|Klhl6|ENSRNOG00000001908|kelch-like family member 6 [Source:RGD Symbol%3BAcc:1307521]
rn6_v1_chr10_-_18443934_18443964	0.0174226	Thra	ENSRNOT00000059895|Ranbp17|ENSRNOG00000005042|RAN binding protein 17 [Source:RGD Symbol%3BAcc:1562576]	ENSRNOT00000080021|Ranbp17|ENSRNOG00000005042|RAN binding protein 17 [Source:RGD Symbol%3BAcc:1562576]
rn6_v1_chr14_+_12218553_12218553	0.0171031	Thra	ENSRNOT00000003237|Prkg2|ENSRNOG00000002361|protein kinase%2C cGMP-dependent%2C type II [Source:RGD Symbol%3BAcc:3401]
rn6_v1_chr1_-_66212418_66212418	0.0167437	Thra	ENSRNOT00000026074|LOC691722|ENSRNOG00000019280|hypothetical protein LOC691722 [Source:RGD Symbol%3BAcc:1595996]
rn6_v1_chr2_+_198312428_198312428	0.0167182	Thra	ENSRNOT00000028758|Sf3b4|ENSRNOG00000021181|splicing factor 3b%2C subunit 4 [Source:RGD Symbol%3BAcc:1309667]
rn6_v1_chr5_+_14415841_14415841	0.0166208	Thra	ENSRNOT00000010682|Rgs20|ENSRNOG00000008100|regulator of G-protein signaling 20 [Source:RGD Symbol%3BAcc:1586146]
rn6_v1_chr1_+_224824799_224824799	0.0162567	Thra	ENSRNOT00000024757|Slc22a6|ENSRNOG00000018215|solute carrier family 22 member 6 [Source:RGD Symbol%3BAcc:69338]
rn6_v1_chr17_+_36334147_36334147	0.0160631	Thra	ENSRNOT00000050261|E2f3|ENSRNOG00000029273|E2F transcription factor 3 [Source:RGD Symbol%3BAcc:1561600]
rn6_v1_chr4_-_145948996_145948996	0.015449	Thra	ENSRNOT00000043476|Atp2b2|ENSRNOG00000030269|ATPase plasma membrane Ca2+ transporting 2 [Source:RGD Symbol%3BAcc:2176]
rn6_v1_chr1_-_64446818_64446818	0.015129	Thra	ENSRNOT00000081980|Myadm|ENSRNOG00000053450|myeloid-associated differentiation marker [Source:RGD Symbol%3BAcc:727835]
rn6_v1_chr3_+_148510779_148510779	0.0141936	Thra	ENSRNOT00000012156|Xkr7|ENSRNOG00000009180|XK related 7 [Source:RGD Symbol%3BAcc:1359224]
rn6_v1_chr7_-_122926336_122926336	0.0140833	Thra	ENSRNOT00000000205|Chadl|ENSRNOG00000024631|chondroadherin-like [Source:RGD Symbol%3BAcc:6504353]
rn6_v1_chr17_+_77167740_77167740	0.013698	Thra	ENSRNOT00000042881|Optn|ENSRNOG00000017941|optineurin [Source:RGD Symbol%3BAcc:628886]
rn6_v1_chr7_-_142180997_142180997	0.0136861	Thra	ENSRNOT00000087632|Tfcp2|ENSRNOG00000032395|transcription factor CP2 [Source:RGD Symbol%3BAcc:1306738]
rn6_v1_chr6_+_29106141_29106141	0.0136272	Thra	ENSRNOT00000084560|Atad2b|ENSRNOG00000058973|ATPase family%2C AAA domain containing 2B [Source:RGD Symbol%3BAcc:1566199]
rn6_v1_chr6_+_2216623_2216623	0.0135211	Thra	ENSRNOT00000008045|Rmdn2|ENSRNOG00000006082|regulator of microtubule dynamics 2 [Source:RGD Symbol%3BAcc:1559836]
rn6_v1_chr10_-_85435016_85435016	0.012893	Thra	ENSRNOT00000079921|4933428G20Rik|ENSRNOG00000055533|RIKEN cDNA 4933428G20 gene [Source:MGI Symbol%3BAcc:MGI:1918475]
rn6_v1_chr7_-_140437467_140437467	0.0128101	Thra	ENSRNOT00000087181|Fkbp11|ENSRNOG00000054775|FK506 binding protein 11 [Source:RGD Symbol%3BAcc:1306161]
rn6_v1_chr1_-_134867001_134867001	0.0128011	Thra	ENSRNOT00000090149|Chd2|ENSRNOG00000012716|chromodomain helicase DNA binding protein 2 [Source:RGD Symbol%3BAcc:1310056]
rn6_v1_chr3_+_150055749_150055749	0.0125573	Thra	ENSRNOT00000055335|Actl10|ENSRNOG00000036864|actin-like 10 [Source:RGD Symbol%3BAcc:6491130]
rn6_v1_chr1_+_177048655_177048655	0.0109746	Thra	ENSRNOT00000081595|Mical2|ENSRNOG00000016244|microtubule associated monooxygenase%2C calponin and LIM domain containing 2 [Source:RGD Symbol%3BAcc:1311773]
rn6_v1_chr10_+_85608544_85608544	0.0108535	Thra	ENSRNOT00000092122|Mllt6|ENSRNOG00000053285|MLLT6%2C PHD finger domain containing [Source:RGD Symbol%3BAcc:1306689]
rn6_v1_chr8_+_50559126_50559126	0.0108023	Thra	ENSRNOT00000024918|Apoa5|ENSRNOG00000018436|apolipoprotein A5 [Source:RGD Symbol%3BAcc:70903]
rn6_v1_chr5_-_137238354_137238354	0.0106582	Thra	ENSRNOT00000039235|Szt2|ENSRNOG00000028659|seizure threshold 2 homolog (mouse) [Source:RGD Symbol%3BAcc:1308616]
rn6_v1_chr14_-_83219071_83219071	0.0103747	Thra	ENSRNOT00000085788|Depdc5|ENSRNOG00000018144|DEP domain containing 5 [Source:RGD Symbol%3BAcc:1311535]
rn6_v1_chr5_-_152473868_152473868	0.010281	Thra	ENSRNOT00000022130|Fam110d|ENSRNOG00000016491|family with sequence similarity 110%2C member D [Source:RGD Symbol%3BAcc:1564994]
rn6_v1_chr5_-_147691997_147691997	0.00988212	Thra	ENSRNOT00000011887|Tssk3|ENSRNOG00000008693|testis-specific serine kinase 3 [Source:RGD Symbol%3BAcc:1359231]
rn6_v1_chr11_+_73936750_73936750	0.00957195	Thra	ENSRNOT00000002350|Atp13a3|ENSRNOG00000001724|ATPase 13A3 [Source:RGD Symbol%3BAcc:1590881]
rn6_v1_chr5_+_154522119_154522119	0.00946105	Thra	ENSRNOT00000072618|E2f2|ENSRNOG00000047741|E2F transcription factor 2 [Source:RGD Symbol%3BAcc:1593939]
rn6_v1_chr4_+_57715946_57716048	0.00872457	Thra	ENSRNOT00000079059|Klhdc10|ENSRNOG00000010267|kelch domain containing 10 [Source:RGD Symbol%3BAcc:1309792]	ENSRNOT00000034429|Klhdc10|ENSRNOG00000010267|kelch domain containing 10 [Source:RGD Symbol%3BAcc:1309792]
rn6_v1_chr15_+_34270648_34270648	0.00868033	Thra	ENSRNOT00000026333|Rnf31|ENSRNOG00000019438|ring finger protein 31 [Source:RGD Symbol%3BAcc:1305513]
rn6_v1_chr10_+_84979717_84979717	0.00831583	Thra	ENSRNOT00000065555|Mrpl10|ENSRNOG00000009567|mitochondrial ribosomal protein L10 [Source:RGD Symbol%3BAcc:1588626]
rn6_v1_chr3_+_155297566_155297619	0.00794326	Thra	ENSRNOT00000021435|Dhx35|ENSRNOG00000015928|DEAH-box helicase 35 [Source:RGD Symbol%3BAcc:1311165]	ENSRNOT00000084866|Dhx35|ENSRNOG00000015928|DEAH-box helicase 35 [Source:RGD Symbol%3BAcc:1311165]
rn6_v1_chr7_-_142180794_142180794	0.00763443	Thra	ENSRNOT00000037447|Tfcp2|ENSRNOG00000032395|transcription factor CP2 [Source:RGD Symbol%3BAcc:1306738]
rn6_v1_chr5_+_14415606_14415606	0.00747981	Thra	ENSRNOT00000089273|Rgs20|ENSRNOG00000008100|regulator of G-protein signaling 20 [Source:RGD Symbol%3BAcc:1586146]
rn6_v1_chr11_-_4332255_4332255	0.00744817	Thra	ENSRNOT00000087133|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr1_+_84067938_84067938	0.00689507	Thra	ENSRNOT00000057213|Numbl|ENSRNOG00000020867|NUMB-like%2C endocytic adaptor protein [Source:RGD Symbol%3BAcc:1307579]
rn6_v1_chr14_+_84417320_84417320	0.00665911	Thra	ENSRNOT00000008788|Tbc1d10a|ENSRNOG00000006394|TBC1 domain family%2C member 10a [Source:RGD Symbol%3BAcc:1311641]
rn6_v1_chr14_-_83219464_83219464	0.00645965	Thra	ENSRNOT00000067694|Depdc5|ENSRNOG00000018144|DEP domain containing 5 [Source:RGD Symbol%3BAcc:1311535]
rn6_v1_chr1_-_59347472_59347472	0.00639192	Thra	ENSRNOT00000017718|Lnpep|ENSRNOG00000047387|leucyl and cystinyl aminopeptidase [Source:RGD Symbol%3BAcc:621752]
rn6_v1_chr18_+_30574627_30574627	0.00595319	Thra	ENSRNOT00000060484|Pcdhb19|ENSRNOG00000039469|protocadherin beta 19 [Source:RGD Symbol%3BAcc:1549697]
rn6_v1_chr20_+_3827086_3827086	0.00586779	Thra	ENSRNOT00000081588|Rxrb|ENSRNOG00000000464|retinoid X receptor beta [Source:RGD Symbol%3BAcc:3611]
rn6_v1_chr1_-_265798167_265798167	0.00563797	Thra	ENSRNOT00000079483|Ldb1|ENSRNOG00000018468|LIM domain binding 1 [Source:RGD Symbol%3BAcc:1310359]
rn6_v1_chr4_+_113948514_113948514	0.00553202	Thra	ENSRNOT00000011521|LOC103692171|ENSRNOG00000008648|mannosyl-oligosaccharide glucosidase [Source:RGD Symbol%3BAcc:9236907]
rn6_v1_chr1_+_72425707_72425707	0.00442737	Thra	ENSRNOT00000058956|Sbk2|ENSRNOG00000038625|SH3 domain binding kinase family%2C member 2 [Source:RGD Symbol%3BAcc:1563279]
rn6_v1_chr19_-_27535792_27535792	0.00397746	Thra	ENSRNOT00000024040|Olr1666|ENSRNOG00000017868|olfactory receptor 1666 [Source:RGD Symbol%3BAcc:1333226]
rn6_v1_chr9_+_88494676_88494676	0.00371462	Thra	ENSRNOT00000089451|LOC102556337|ENSRNOG00000048016|mitochondrial fission factor-like [Source:RGD Symbol%3BAcc:7706142]
rn6_v1_chr6_-_122721496_122721496	0.00365289	Thra	ENSRNOT00000079697|Ptpn21|ENSRNOG00000060568|protein tyrosine phosphatase%2C non-receptor type 21 [Source:RGD Symbol%3BAcc:620216]
rn6_v1_chr2_+_229196616_229196616	0.00357668	Thra	ENSRNOT00000012773|Ndst4|ENSRNOG00000009577|N-deacetylase and N-sulfotransferase 4 [Source:RGD Symbol%3BAcc:1306531]
rn6_v1_chr5_-_126911520_126911520	0.00268545	Thra	ENSRNOT00000091521|Dio1|ENSRNOG00000061237|deiodinase%2C iodothyronine%2C type I [Source:RGD Symbol%3BAcc:2504]
rn6_v1_chr16_-_69242028_69242028	0.00246765	Thra	ENSRNOT00000019002|Zfp703|ENSRNOG00000014199|zinc finger protein 703 [Source:RGD Symbol%3BAcc:1588249]
rn6_v1_chr10_-_102423084_102423084	0.00163828	Thra	ENSRNOT00000065145|Sdk2|ENSRNOG00000024711|sidekick cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1310397]
rn6_v1_chrX_-_119162518_119162518	0.000903217	Thra	ENSRNOT00000073176|LOC103694506|ENSRNOG00000046062|ubiquitin-conjugating enzyme E2 W [Source:RGD Symbol%3BAcc:9288456]
rn6_v1_chr16_+_23553647_23553647	0.000409903	Thra	ENSRNOT00000041994|Psd3|ENSRNOG00000013884|pleckstrin and Sec7 domain containing 3 [Source:RGD Symbol%3BAcc:1559968]
rn6_v1_chr12_+_51878153_51878153	0.000209808	Thra	ENSRNOT00000056798|Hscb|ENSRNOG00000037508|HscB mitochondrial iron-sulfur cluster co-chaperone [Source:RGD Symbol%3BAcc:1311005]
rn6_v1_chr15_-_86142672_86142672	0.000137647	Thra	ENSRNOT00000057830|Commd6|ENSRNOG00000038012|COMM domain containing 6 [Source:RGD Symbol%3BAcc:1560745]
rn6_v1_chr3_-_13896838_13896838	0.000132087	Thra	ENSRNOT00000025399|Fbxw2|ENSRNOG00000018687|F-box and WD repeat domain containing 2 [Source:RGD Symbol%3BAcc:1310460]
rn6_v1_chr5_-_76039760_76039760	7.13681e-05	Thra	ENSRNOT00000019959|RGD1306148|ENSRNOG00000025076|similar to KIAA0368 [Source:RGD Symbol%3BAcc:1306148]
