GSE53960: rat RNA-Seq transcriptomic Bodymap
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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Mef2d_Mef2a | 6.11 |
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Hnf1b | 6.05 |
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Rfx3_Rfx1_Rfx4 | 5.86 |
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Mef2c | 5.08 |
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Hnf1a | 5.04 |
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Hnf4a | 4.87 |
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Ybx1_Nfya_Nfyb_Nfyc_Cebpz | 4.86 |
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Pou5f1 | 4.67 |
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Wrnip1_Mta3_Rcor1 | 4.47 |
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Snai1_Zeb1_Snai2 | 4.28 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.