rn6_v1_chr16_-_39476384_39476384	31.4722	Gli1	ENSRNOT00000092968|Gpm6a|ENSRNOG00000010731|glycoprotein m6a [Source:RGD Symbol%3BAcc:631368]
rn6_v1_chr16_-_39476025_39476025	28.0474	Gli1	ENSRNOT00000014312|Gpm6a|ENSRNOG00000010731|glycoprotein m6a [Source:RGD Symbol%3BAcc:631368]
rn6_v1_chr7_-_136853957_136853957	25.7701	Gli1	ENSRNOT00000008985|Nell2|ENSRNOG00000006235|neural EGFL like 2 [Source:RGD Symbol%3BAcc:620999]
rn6_v1_chr10_-_27179254_27179254	23.6853	Gli1	ENSRNOT00000004619|Gabrg2|ENSRNOG00000003241|gamma-aminobutyric acid type A receptor gamma 2 subunit [Source:RGD Symbol%3BAcc:61966]
rn6_v1_chr3_+_154043873_154043873	22.436	Gli1	ENSRNOT00000072502|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]	ENSRNOT00000034166|Nnat|ENSRNOG00000024923|neuronatin [Source:RGD Symbol%3BAcc:620155]
rn6_v1_chr1_-_170397191_170397191	20.3339	Gli1	ENSRNOT00000090181|Apbb1|ENSRNOG00000018020|amyloid beta precursor protein binding family B member 1 [Source:RGD Symbol%3BAcc:2122]
rn6_v1_chr9_-_75528644_75528644	20.2622	Gli1	ENSRNOT00000019283|Erbb4|ENSRNOG00000014248|erb-b2 receptor tyrosine kinase 4 [Source:RGD Symbol%3BAcc:620486]
rn6_v1_chr11_-_30051103_30051103	19.722	Gli1	ENSRNOT00000046486|Tiam1|ENSRNOG00000021569|T-cell lymphoma invasion and metastasis 1 [Source:RGD Symbol%3BAcc:1307455]
rn6_v1_chr6_+_27768943_27768943	19.6856	Gli1	ENSRNOT00000015820|Kif3c|ENSRNOG00000011394|kinesin family member 3C [Source:RGD Symbol%3BAcc:621538]
rn6_v1_chr1_-_220467159_220467159	18.6388	Gli1	ENSRNOT00000075365|Tmem151a|ENSRNOG00000049951|transmembrane protein 151A [Source:RGD Symbol%3BAcc:1310680]
rn6_v1_chrX_+_71199491_71199532	17.8192	Gli1	ENSRNOT00000076168|Nlgn3|ENSRNOG00000003812|neuroligin 3 [Source:RGD Symbol%3BAcc:621119]	ENSRNOT00000005077|Nlgn3|ENSRNOG00000003812|neuroligin 3 [Source:RGD Symbol%3BAcc:621119]	ENSRNOT00000005102|Nlgn3|ENSRNOG00000003812|neuroligin 3 [Source:RGD Symbol%3BAcc:621119]
rn6_v1_chr8_-_59239954_59239954	17.6564	Gli1	ENSRNOT00000016104|Acsbg1|ENSRNOG00000011381|acyl-CoA synthetase bubblegum family member 1 [Source:RGD Symbol%3BAcc:708557]
rn6_v1_chr10_+_89089646_89089646	17.2827	Gli1	ENSRNOT00000027505|Cntnap1|ENSRNOG00000020277|contactin associated protein 1 [Source:RGD Symbol%3BAcc:70902]
rn6_v1_chr13_+_70379346_70379346	17.2456	Gli1	ENSRNOT00000038183|Nmnat2|ENSRNOG00000027697|nicotinamide nucleotide adenylyltransferase 2 [Source:RGD Symbol%3BAcc:1307331]
rn6_v1_chr10_+_20320878_20320878	16.7888	Gli1	ENSRNOT00000009714|Slit3|ENSRNOG00000007377|slit guidance ligand 3 [Source:RGD Symbol%3BAcc:69311]
rn6_v1_chr1_+_113034227_113034266	15.9245	Gli1	ENSRNOT00000081831|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077877|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]	ENSRNOT00000077594|Gabrb3|ENSRNOG00000060599|gamma-aminobutyric acid type A receptor beta 3 subunit [Source:RGD Symbol%3BAcc:2651]
rn6_v1_chr18_+_79406381_79406381	14.9478	Gli1	ENSRNOT00000022303|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000058295|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000058296|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]	ENSRNOT00000022280|Mbp|ENSRNOG00000016516|myelin basic protein [Source:RGD Symbol%3BAcc:3054]
rn6_v1_chr1_-_188097530_188097530	14.752	Gli1	ENSRNOT00000078825|Syt17|ENSRNOG00000017136|synaptotagmin 17 [Source:RGD Symbol%3BAcc:708576]
rn6_v1_chr10_+_38889370_38889370	14.1633	Gli1	ENSRNOT00000091236|Sept8|ENSRNOG00000007462|septin 8 [Source:RGD Symbol%3BAcc:1308449]
rn6_v1_chr16_+_7212488_7212488	13.3132	Gli1	ENSRNOT00000024840|Nt5dc2|ENSRNOG00000018358|5'-nucleotidase domain containing 2 [Source:RGD Symbol%3BAcc:1305524]
rn6_v1_chr5_-_17061361_17061361	13.2594	Gli1	ENSRNOT00000089318|Penk|ENSRNOG00000008943|proenkephalin [Source:RGD Symbol%3BAcc:68946]
rn6_v1_chr20_-_1984737_1984802	13.1618	Gli1	ENSRNOT00000040232|Gabbr1|ENSRNOG00000000774|gamma-aminobutyric acid type B receptor subunit 1 [Source:RGD Symbol%3BAcc:621537]	ENSRNOT00000051634|Gabbr1|ENSRNOG00000000774|gamma-aminobutyric acid type B receptor subunit 1 [Source:RGD Symbol%3BAcc:621537]	ENSRNOT00000079445|Gabbr1|ENSRNOG00000000774|gamma-aminobutyric acid type B receptor subunit 1 [Source:RGD Symbol%3BAcc:621537]
rn6_v1_chr6_-_4520604_4520604	11.8568	Gli1	ENSRNOT00000042230|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]	ENSRNOT00000043870|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]	ENSRNOT00000070918|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]	ENSRNOT00000046246|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]	ENSRNOT00000052367|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]	ENSRNOT00000042251|Slc8a1|ENSRNOG00000008479|solute carrier family 8 member A1 [Source:RGD Symbol%3BAcc:3717]
rn6_v1_chr10_+_67677071_67677071	11.6424	Gli1	ENSRNOT00000007312|Rhbdl3|ENSRNOG00000005515|rhomboid like 3 [Source:RGD Symbol%3BAcc:1311901]
rn6_v1_chr10_-_108321644_108321644	11.2859	Gli1	ENSRNOT00000075171|Tbc1d16|ENSRNOG00000049758|TBC1 domain family%2C member 16 [Source:RGD Symbol%3BAcc:1588560]
rn6_v1_chr7_+_141326950_141326950	10.8604	Gli1	ENSRNOT00000084075|Asic1|ENSRNOG00000059765|acid sensing ion channel subunit 1 [Source:RGD Symbol%3BAcc:71062]
rn6_v1_chr1_-_216080287_216080287	10.5611	Gli1	ENSRNOT00000027682|Th|ENSRNOG00000020410|tyrosine hydroxylase [Source:RGD Symbol%3BAcc:3853]
rn6_v1_chr4_+_140247313_140247335	10.1781	Gli1	ENSRNOT00000040255|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000064025|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000041130|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]	ENSRNOT00000043646|Itpr1|ENSRNOG00000007104|inositol 1%2C4%2C5-trisphosphate receptor%2C type 1 [Source:RGD Symbol%3BAcc:2933]
rn6_v1_chr5_+_131380297_131380297	10.1355	Gli1	ENSRNOT00000010548|Agbl4|ENSRNOG00000008011|ATP/GTP binding protein-like 4 [Source:RGD Symbol%3BAcc:6493177]
rn6_v1_chr1_-_84812486_84812486	9.8369	Gli1	ENSRNOT00000078369|AABR07002779.1|ENSRNOG00000054614|
rn6_v1_chr1_+_115975324_115975324	9.37922	Gli1	ENSRNOT00000080907|Atp10a|ENSRNOG00000056228|ATPase phospholipid transporting 10A (putative) [Source:RGD Symbol%3BAcc:1306150]
rn6_v1_chr18_+_58270410_58270410	8.95986	Gli1	ENSRNOT00000067554|Apcdd1|ENSRNOG00000043304|APC down-regulated 1 [Source:RGD Symbol%3BAcc:1589962]
rn6_v1_chr15_+_40665041_40665041	8.90483	Gli1	ENSRNOT00000018300|Amer2|ENSRNOG00000013623|APC membrane recruitment protein 2 [Source:RGD Symbol%3BAcc:1559605]
rn6_v1_chr6_-_27190126_27190132	8.76169	Gli1	ENSRNOT00000068412|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]	ENSRNOT00000013107|Kcnk3|ENSRNOG00000009790|potassium two pore domain channel subfamily K member 3 [Source:RGD Symbol%3BAcc:61997]
rn6_v1_chr10_+_86669233_86669233	7.92368	Gli1	ENSRNOT00000012340|Thra|ENSRNOG00000009066|thyroid hormone receptor alpha [Source:RGD Symbol%3BAcc:3857]
rn6_v1_chr5_+_18901039_18901039	7.37017	Gli1	ENSRNOT00000012066|Fam110b|ENSRNOG00000009114|family with sequence similarity 110%2C member B [Source:RGD Symbol%3BAcc:1563403]
rn6_v1_chr3_-_39596718_39596718	7.30597	Gli1	ENSRNOT00000006784|Rprm|ENSRNOG00000005109|reprimo%2C TP53 dependent G2 arrest mediator candidate [Source:RGD Symbol%3BAcc:1595512]
rn6_v1_chr17_-_10575203_10575203	7.16474	Gli1	ENSRNOT00000073186|Arl10|ENSRNOG00000045948|ADP-ribosylation factor like GTPase 10 [Source:RGD Symbol%3BAcc:1303298]
rn6_v1_chr3_+_152752091_152752091	7.08738	Gli1	ENSRNOT00000037177|Dlgap4|ENSRNOG00000020225|DLG associated protein 4 [Source:RGD Symbol%3BAcc:708350]
rn6_v1_chr4_+_87293871_87293871	6.94589	Gli1	ENSRNOT00000090943|AABR07060628.1|ENSRNOG00000051748|
rn6_v1_chr1_-_188097374_188097374	6.84563	Gli1	ENSRNOT00000092246|Syt17|ENSRNOG00000017136|synaptotagmin 17 [Source:RGD Symbol%3BAcc:708576]
rn6_v1_chrX_-_115426083_115426083	6.72557	Gli1	ENSRNOT00000014756|AABR07040947.1|ENSRNOG00000011100|
rn6_v1_chr5_-_65073012_65073012	6.29121	Gli1	ENSRNOT00000007957|Grin3a|ENSRNOG00000005723|glutamate ionotropic receptor NMDA type subunit 3A [Source:RGD Symbol%3BAcc:621704]
rn6_v1_chr17_-_1093873_1093873	6.18971	Gli1	ENSRNOT00000086130|Ptch1|ENSRNOG00000019354|patched 1 [Source:RGD Symbol%3BAcc:621425]
rn6_v1_chr19_-_10358695_10358695	6.08854	Gli1	ENSRNOT00000019770|Katnb1|ENSRNOG00000014626|katanin regulatory subunit B1 [Source:RGD Symbol%3BAcc:1311256]
rn6_v1_chr6_+_137997335_137997335	5.99554	Gli1	ENSRNOT00000006872|Tmem121|ENSRNOG00000005174|transmembrane protein 121 [Source:RGD Symbol%3BAcc:1597216]
rn6_v1_chr7_+_14643704_14643704	5.45851	Gli1	ENSRNOT00000044642|AABR07055875.1|ENSRNOG00000050603|
rn6_v1_chr20_+_4020317_4020317	5.4245	Gli1	ENSRNOT00000000526|RT1-DOb|ENSRNOG00000000454|RT1 class II%2C locus DOb [Source:RGD Symbol%3BAcc:1595814]
rn6_v1_chr3_+_80676820_80676820	5.22423	Gli1	ENSRNOT00000084809|Ambra1|ENSRNOG00000017422|autophagy and beclin 1 regulator 1 [Source:RGD Symbol%3BAcc:621330]
rn6_v1_chr3_+_79823945_79823945	5.18602	Gli1	ENSRNOT00000014484|Celf1|ENSRNOG00000010379|CUGBP%2C Elav-like family member 1 [Source:RGD Symbol%3BAcc:1307721]
rn6_v1_chr7_-_142300382_142300382	5.16569	Gli1	ENSRNOT00000048262|Bin2|ENSRNOG00000031930|bridging integrator 2 [Source:RGD Symbol%3BAcc:1306789]
rn6_v1_chr4_+_24617008_24617008	5.02866	Gli1	ENSRNOT00000086607|Ewsr1|ENSRNOG00000046950|EWS RNA-binding protein 1 [Source:RGD Symbol%3BAcc:1307258]
rn6_v1_chr5_+_156618962_156618962	4.84041	Gli1	ENSRNOT00000020069|Sh2d5|ENSRNOG00000014909|SH2 domain containing 5 [Source:RGD Symbol%3BAcc:1305952]
rn6_v1_chr10_+_15099009_15099009	4.83783	Gli1	ENSRNOT00000015206|Rpusd1|ENSRNOG00000023639|RNA pseudouridylate synthase domain containing 1 [Source:RGD Symbol%3BAcc:1304934]
rn6_v1_chrX_+_28435507_28435507	4.76009	Gli1	ENSRNOT00000005615|Prps2|ENSRNOG00000004160|phosphoribosyl pyrophosphate synthetase 2 [Source:RGD Symbol%3BAcc:3415]
rn6_v1_chr1_+_144070754_144070754	4.65393	Gli1	ENSRNOT00000079989|Sh3gl3|ENSRNOG00000019776|SH3 domain-containing GRB2-like 3 [Source:RGD Symbol%3BAcc:620578]
rn6_v1_chr12_+_47074200_47074200	4.52667	Gli1	ENSRNOT00000014910|Dynll1|ENSRNOG00000011222|dynein light chain LC8-type 1 [Source:RGD Symbol%3BAcc:619866]
rn6_v1_chr6_+_86713803_86713803	4.42712	Gli1	ENSRNOT00000005861|Fam179b|ENSRNOG00000004415|family with sequence similarity 179%2C member B [Source:RGD Symbol%3BAcc:1310474]
rn6_v1_chr10_+_84986328_84986384	4.40647	Gli1	ENSRNOT00000085830|Osbpl7|ENSRNOG00000009473|oxysterol binding protein-like 7 [Source:RGD Symbol%3BAcc:1309141]	ENSRNOT00000067665|Osbpl7|ENSRNOG00000009473|oxysterol binding protein-like 7 [Source:RGD Symbol%3BAcc:1309141]
rn6_v1_chr2_-_178057157_178057157	4.38684	Gli1	ENSRNOT00000091135|Rapgef2|ENSRNOG00000021581|Rap guanine nucleotide exchange factor 2 [Source:RGD Symbol%3BAcc:1306434]
rn6_v1_chr14_+_77322012_77322040	4.31439	Gli1	ENSRNOT00000088600|Zbtb49|ENSRNOG00000005633|zinc finger and BTB domain containing 49 [Source:RGD Symbol%3BAcc:1306733]	ENSRNOT00000041639|Zbtb49|ENSRNOG00000005633|zinc finger and BTB domain containing 49 [Source:RGD Symbol%3BAcc:1306733]
rn6_v1_chr4_-_145487426_145487426	4.23236	Gli1	ENSRNOT00000013488|Emc3|ENSRNOG00000009934|ER membrane protein complex subunit 3 [Source:RGD Symbol%3BAcc:1311566]
rn6_v1_chrX_+_29157470_29157470	4.15614	Gli1	ENSRNOT00000081986|LOC100910245|ENSRNOG00000052455|ribose-phosphate pyrophosphokinase 2-like [Source:RGD Symbol%3BAcc:6499548]
rn6_v1_chr10_+_56824505_56824505	4.12807	Gli1	ENSRNOT00000067128|Slc16a11|ENSRNOG00000018748|solute carrier family 16%2C member 11 [Source:RGD Symbol%3BAcc:1311125]
rn6_v1_chr7_-_12810570_12810570	3.97451	Gli1	ENSRNOT00000012578|Fstl3|ENSRNOG00000009311|follistatin like 3 [Source:RGD Symbol%3BAcc:621811]
rn6_v1_chr16_+_61758917_61758917	3.93027	Gli1	ENSRNOT00000084858|Leprotl1|ENSRNOG00000012601|leptin receptor overlapping transcript-like 1 [Source:RGD Symbol%3BAcc:1307168]
rn6_v1_chr6_+_86713604_86713604	3.78924	Gli1	ENSRNOT00000059271|Fam179b|ENSRNOG00000004415|family with sequence similarity 179%2C member B [Source:RGD Symbol%3BAcc:1310474]
rn6_v1_chr3_-_2573387_2573387	3.72657	Gli1	ENSRNOT00000017271|Dpp7|ENSRNOG00000012640|dipeptidylpeptidase 7 [Source:RGD Symbol%3BAcc:71073]
rn6_v1_chr10_+_56610051_56610051	3.61739	Gli1	ENSRNOT00000024348|Dvl2|ENSRNOG00000017915|dishevelled segment polarity protein 2 [Source:RGD Symbol%3BAcc:1309725]
rn6_v1_chr2_+_248715281_248715281	3.5134	Gli1	ENSRNOT00000089648|Gtf2b|ENSRNOG00000011135|general transcription factor IIB [Source:RGD Symbol%3BAcc:619735]
rn6_v1_chr1_-_210739600_210739600	3.49876	Gli1	ENSRNOT00000031734|Tcerg1l|ENSRNOG00000016737|transcription elongation regulator 1-like [Source:RGD Symbol%3BAcc:1562437]
rn6_v1_chr10_-_90312386_90312386	3.3359	Gli1	ENSRNOT00000028445|Slc4a1|ENSRNOG00000020951|solute carrier family 4 member 1 [Source:RGD Symbol%3BAcc:3710]
rn6_v1_chr5_+_63781801_63781801	3.29932	Gli1	ENSRNOT00000008302|Nr4a3|ENSRNOG00000005964|nuclear receptor subfamily 4%2C group A%2C member 3 [Source:RGD Symbol%3BAcc:61882]
rn6_v1_chr3_-_147481073_147481073	3.23185	Gli1	ENSRNOT00000084722|Fam110a|ENSRNOG00000050946|family with sequence similarity 110%2C member A [Source:RGD Symbol%3BAcc:1308904]
rn6_v1_chr4_+_113935492_113935492	3.22975	Gli1	ENSRNOT00000035329|LOC103692170|ENSRNOG00000022326|coiled-coil domain-containing protein 142 [Source:RGD Symbol%3BAcc:9266814]
rn6_v1_chr3_-_138708332_138708332	2.99263	Gli1	ENSRNOT00000010678|Rbbp9|ENSRNOG00000007972|RB binding protein 9%2C serine hydrolase [Source:RGD Symbol%3BAcc:3542]
rn6_v1_chr10_+_65448950_65448961	2.96987	Gli1	ENSRNOT00000082348|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]	ENSRNOT00000037016|Rab34|ENSRNOG00000023375|RAB34%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:1305058]
rn6_v1_chr3_-_148312791_148312791	2.84051	Gli1	ENSRNOT00000091419|Bcl2l1|ENSRNOG00000007946|Bcl2-like 1 [Source:RGD Symbol%3BAcc:2200]
rn6_v1_chrX_-_72370044_72370044	2.73287	Gli1	ENSRNOT00000004224|Hdac8|ENSRNOG00000003122|histone deacetylase 8 [Source:RGD Symbol%3BAcc:1562895]
rn6_v1_chr1_-_80689171_80689171	2.57925	Gli1	ENSRNOT00000045574|Bcam|ENSRNOG00000029399|basal cell adhesion molecule (Lutheran blood group) [Source:RGD Symbol%3BAcc:68378]
rn6_v1_chr19_+_46761570_46761570	2.43465	Gli1	ENSRNOT00000058779|Wwox|ENSRNOG00000012030|WW domain-containing oxidoreductase [Source:RGD Symbol%3BAcc:1309927]
rn6_v1_chr8_-_23084879_23084879	2.37772	Gli1	ENSRNOT00000018874|Zfp653|ENSRNOG00000014065|zinc finger protein 653 [Source:RGD Symbol%3BAcc:1308754]
rn6_v1_chr13_-_42263024_42263024	2.26955	Gli1	ENSRNOT00000004741|Lypd1|ENSRNOG00000003453|Ly6/Plaur domain containing 1 [Source:RGD Symbol%3BAcc:1549754]
rn6_v1_chrX_-_43592200_43592200	2.21417	Gli1	ENSRNOT00000005033|Acot9|ENSRNOG00000003782|acyl-CoA thioesterase 9 [Source:RGD Symbol%3BAcc:1359188]
rn6_v1_chr18_+_60496778_60496778	2.21292	Gli1	ENSRNOT00000088624|Nedd4l|ENSRNOG00000017610|neural precursor cell expressed%2C developmentally down-regulated 4-like%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:735047]
rn6_v1_chr5_+_172273459_172273459	2.20421	Gli1	ENSRNOT00000017957|Mmel1|ENSRNOG00000012593|membrane metallo-endopeptidase-like 1 [Source:RGD Symbol%3BAcc:1309299]
rn6_v1_chr3_+_20641664_20641664	2.0949	Gli1	ENSRNOT00000044699|AABR07051741.1|ENSRNOG00000057548|
rn6_v1_chr18_-_19275273_19275273	2.07964	Gli1	ENSRNOT00000041707|LOC102547344|ENSRNOG00000030156|lateral signaling target protein 2 homolog [Source:RGD Symbol%3BAcc:7524065]
rn6_v1_chr17_+_56935451_56935451	2.05598	Gli1	ENSRNOT00000058966|RGD1564129|ENSRNOG00000042120|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1564129]
rn6_v1_chr9_+_72052966_72052966	1.76179	Gli1	ENSRNOT00000021099|Pth2r|ENSRNOG00000015259|parathyroid hormone 2 receptor [Source:RGD Symbol%3BAcc:620612]
rn6_v1_chr2_-_206699105_206699105	1.68033	Gli1	ENSRNOT00000088095|Magi3|ENSRNOG00000019885|membrane associated guanylate kinase%2C WW and PDZ domain containing 3 [Source:RGD Symbol%3BAcc:621362]	ENSRNOT00000026952|Magi3|ENSRNOG00000019885|membrane associated guanylate kinase%2C WW and PDZ domain containing 3 [Source:RGD Symbol%3BAcc:621362]
rn6_v1_chr2_-_192671059_192671059	1.61274	Gli1	ENSRNOT00000012174|Sprr1a|ENSRNOG00000024028|small proline-rich protein 1A [Source:RGD Symbol%3BAcc:1593163]
rn6_v1_chr2_+_12102487_12102598	1.60865	Gli1	ENSRNOT00000089209|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]	ENSRNOT00000072155|LOC100912538|ENSRNOG00000048563|centrin-3-like [Source:RGD Symbol%3BAcc:6486167]
rn6_v1_chr3_+_8450275_8450275	1.57118	Gli1	ENSRNOT00000020073|Odf2|ENSRNOG00000014584|outer dense fiber of sperm tails 2 [Source:RGD Symbol%3BAcc:3229]
rn6_v1_chr2_-_196527127_196527127	1.56814	Gli1	ENSRNOT00000028709|Setdb1|ENSRNOG00000021143|SET domain%2C bifurcated 1 [Source:RGD Symbol%3BAcc:1308370]
rn6_v1_chr10_-_13580821_13580821	1.52175	Gli1	ENSRNOT00000009735|Ntn3|ENSRNOG00000006970|netrin 3 [Source:RGD Symbol%3BAcc:619811]
rn6_v1_chr3_+_8450612_8450612	1.40858	Gli1	ENSRNOT00000040457|Odf2|ENSRNOG00000014584|outer dense fiber of sperm tails 2 [Source:RGD Symbol%3BAcc:3229]
rn6_v1_chr5_+_135962911_135962911	1.33924	Gli1	ENSRNOT00000087353|Ptch2|ENSRNOG00000057616|patched 2 [Source:RGD Symbol%3BAcc:1309039]
rn6_v1_chr2_+_225645568_225645568	1.28468	Gli1	ENSRNOT00000017878|Abca4|ENSRNOG00000012892|ATP binding cassette subfamily A member 4 [Source:RGD Symbol%3BAcc:1309445]
rn6_v1_chr1_-_197886759_197886759	1.2733	Gli1	ENSRNOT00000074274|Sh2b1|ENSRNOG00000049181|SH2B adaptor protein 1 [Source:RGD Symbol%3BAcc:620132]
rn6_v1_chr2_+_9683570_9683570	1.19147	Gli1	ENSRNOT00000074157|Cetn3|ENSRNOG00000050877|centrin 3 [Source:RGD Symbol%3BAcc:620249]
rn6_v1_chr5_-_6186329_6186329	1.11101	Gli1	ENSRNOT00000012610|Sulf1|ENSRNOG00000009037|sulfatase 1 [Source:RGD Symbol%3BAcc:708554]
rn6_v1_chr4_+_61924013_61924013	1.07309	Gli1	ENSRNOT00000090717|Bpgm|ENSRNOG00000010133|bisphosphoglycerate mutase [Source:RGD Symbol%3BAcc:735018]
rn6_v1_chr4_-_170932618_170932618	1.0364	Gli1	ENSRNOT00000007779|Arhgdib|ENSRNOG00000005809|Rho GDP dissociation inhibitor beta [Source:RGD Symbol%3BAcc:1305383]
rn6_v1_chr20_-_10968432_10968432	0.988591	Gli1	ENSRNOT00000001593|Cstb|ENSRNOG00000001201|cystatin B [Source:RGD Symbol%3BAcc:2435]
rn6_v1_chr6_+_96871625_96871625	0.916481	Gli1	ENSRNOT00000012361|Snapc1|ENSRNOG00000009296|small nuclear RNA activating complex%2C polypeptide 1 [Source:RGD Symbol%3BAcc:1304671]
rn6_v1_chr7_-_2712723_2712723	0.913079	Gli1	ENSRNOT00000004363|Il23a|ENSRNOG00000003254|interleukin 23 subunit alpha [Source:RGD Symbol%3BAcc:620873]
rn6_v1_chr2_+_27107318_27107318	0.905513	Gli1	ENSRNOT00000019553|Arhgef26|ENSRNOG00000014549|Rho guanine nucleotide exchange factor 26 [Source:RGD Symbol%3BAcc:1562559]
rn6_v1_chr9_+_17122284_17122284	0.75465	Gli1	ENSRNOT00000077749|Polr1c|ENSRNOG00000019079|RNA polymerase I subunit C [Source:RGD Symbol%3BAcc:1309689]
rn6_v1_chr9_-_10734073_10734073	0.660857	Gli1	ENSRNOT00000071199|Kdm4b|ENSRNOG00000049221|lysine demethylase 4B [Source:RGD Symbol%3BAcc:1588576]
rn6_v1_chr10_+_4945911_4945911	0.461017	Gli1	ENSRNOT00000003420|Prm1|ENSRNOG00000002532|protamine 1 [Source:RGD Symbol%3BAcc:1583873]
rn6_v1_chr2_-_196526886_196526886	0.449299	Gli1	ENSRNOT00000077325|Setdb1|ENSRNOG00000021143|SET domain%2C bifurcated 1 [Source:RGD Symbol%3BAcc:1308370]
rn6_v1_chr2_+_198040536_198040536	0.326477	Gli1	ENSRNOT00000028744|Anp32e|ENSRNOG00000021168|acidic nuclear phosphoprotein 32 family member E [Source:RGD Symbol%3BAcc:1310611]
rn6_v1_chr3_-_20479999_20479999	0.298383	Gli1	ENSRNOT00000050573|AABR07051733.2|ENSRNOG00000057344|
rn6_v1_chr10_+_86860685_86860685	0.258204	Gli1	ENSRNOT00000084644|Rara|ENSRNOG00000009972|retinoic acid receptor%2C alpha [Source:RGD Symbol%3BAcc:3534]
rn6_v1_chr7_-_59587382_59587385	0.195862	Gli1	ENSRNOT00000091427|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]	ENSRNOT00000066396|Cnot2|ENSRNOG00000004909|CCR4-NOT transcription complex%2C subunit 2 [Source:RGD Symbol%3BAcc:1311672]
