rn6_v1_chr10_-_96131880_96131880	78.4856	Hoxa1	ENSRNOT00000004578|Cacng5|ENSRNOG00000003288|calcium voltage-gated channel auxiliary subunit gamma 5 [Source:RGD Symbol%3BAcc:628805]
rn6_v1_chr4_-_184096806_184096806	74.4926	Hoxa1	ENSRNOT00000055433|LOC100362344|ENSRNOG00000036910|mKIAA1238 protein-like [Source:RGD Symbol%3BAcc:2318342]
rn6_v1_chr9_-_88256115_88256115	73.2829	Hoxa1	ENSRNOT00000076472|Col4a4|ENSRNOG00000014851|collagen type IV alpha 4 chain [Source:RGD Symbol%3BAcc:1305355]
rn6_v1_chr8_+_13796021_13796021	72.7485	Hoxa1	ENSRNOT00000013927|Vstm5|ENSRNOG00000010480|V-set and transmembrane domain containing 5 [Source:RGD Symbol%3BAcc:1563328]
rn6_v1_chr3_+_154863072_154863072	58.4936	Hoxa1	ENSRNOT00000055200|Snhg11|ENSRNOG00000036802|small nucleolar RNA host gene 11 [Source:RGD Symbol%3BAcc:1563912]
rn6_v1_chr11_-_64421248_64421248	54.1528	Hoxa1	ENSRNOT00000066997|Igsf11|ENSRNOG00000001525|immunoglobulin superfamily%2C member 11 [Source:RGD Symbol%3BAcc:1308758]
rn6_v1_chr3_+_51883559_51883559	42.6303	Hoxa1	ENSRNOT00000007197|Csrnp3|ENSRNOG00000005359|cysteine and serine rich nuclear protein 3 [Source:RGD Symbol%3BAcc:1306214]
rn6_v1_chr15_-_88036354_88036354	41.878	Hoxa1	ENSRNOT00000014747|Ednrb|ENSRNOG00000010997|endothelin receptor type B [Source:RGD Symbol%3BAcc:2536]
rn6_v1_chr1_-_170397191_170397191	41.1937	Hoxa1	ENSRNOT00000090181|Apbb1|ENSRNOG00000018020|amyloid beta precursor protein binding family B member 1 [Source:RGD Symbol%3BAcc:2122]
rn6_v1_chr4_-_155275161_155275161	40.1696	Hoxa1	ENSRNOT00000032690|Rimklb|ENSRNOG00000023814|ribosomal modification protein rimK-like family member B [Source:RGD Symbol%3BAcc:1560851]
rn6_v1_chr20_-_4489281_4489281	39.0821	Hoxa1	ENSRNOT00000031548|Cyp21a1|ENSRNOG00000000428|cytochrome P450%2C family 21%2C subfamily a%2C polypeptide 1 [Source:RGD Symbol%3BAcc:2461]
rn6_v1_chr13_+_46169963_46169963	36.8429	Hoxa1	ENSRNOT00000005212|Thsd7b|ENSRNOG00000003878|thrombospondin type 1 domain containing 7B [Source:RGD Symbol%3BAcc:1306938]
rn6_v1_chr8_-_2045817_2045817	35.7094	Hoxa1	ENSRNOT00000009542|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]	ENSRNOT00000081171|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]	ENSRNOT00000078765|Gria4|ENSRNOG00000006957|glutamate ionotropic receptor AMPA type subunit 4 [Source:RGD Symbol%3BAcc:61863]
rn6_v1_chr4_-_4473307_4473307	33.8815	Hoxa1	ENSRNOT00000045773|Dpp6|ENSRNOG00000030547|dipeptidyl peptidase like 6 [Source:RGD Symbol%3BAcc:68402]
rn6_v1_chr13_+_77485113_77485113	28.033	Hoxa1	ENSRNOT00000080254|Tnr|ENSRNOG00000002468|tenascin R [Source:RGD Symbol%3BAcc:3886]
rn6_v1_chr10_+_42614713_42614713	26.1399	Hoxa1	ENSRNOT00000081136|Gria1|ENSRNOG00000045816|glutamate ionotropic receptor AMPA type subunit 1 [Source:RGD Symbol%3BAcc:621531]	ENSRNOT00000073148|Gria1|ENSRNOG00000045816|glutamate ionotropic receptor AMPA type subunit 1 [Source:RGD Symbol%3BAcc:621531]
rn6_v1_chr9_+_118849302_118849302	25.6643	Hoxa1	ENSRNOT00000087592|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr16_+_46731403_46731403	25.4432	Hoxa1	ENSRNOT00000017624|Tenm3|ENSRNOG00000012802|teneurin transmembrane protein 3 [Source:RGD Symbol%3BAcc:1306641]
rn6_v1_chr9_-_60255746_60255746	24.6559	Hoxa1	ENSRNOT00000093710|Dnah7|ENSRNOG00000060984|dynein%2C axonemal%2C heavy chain 7 [Source:RGD Symbol%3BAcc:621798]
rn6_v1_chr5_-_126395668_126395668	24.082	Hoxa1	ENSRNOT00000010396|Acot11|ENSRNOG00000007837|acyl-CoA thioesterase 11 [Source:RGD Symbol%3BAcc:2324815]
rn6_v1_chr15_+_43007908_43007908	23.2254	Hoxa1	ENSRNOT00000084753|Stmn4|ENSRNOG00000053334|stathmin 4 [Source:RGD Symbol%3BAcc:69349]	ENSRNOT00000091567|Stmn4|ENSRNOG00000053334|stathmin 4 [Source:RGD Symbol%3BAcc:69349]	ENSRNOT00000087709|Stmn4|ENSRNOG00000053334|stathmin 4 [Source:RGD Symbol%3BAcc:69349]
rn6_v1_chr1_-_7443863_7443863	21.9637	Hoxa1	ENSRNOT00000088558|Phactr2|ENSRNOG00000015473|phosphatase and actin regulator 2 [Source:RGD Symbol%3BAcc:1303141]
rn6_v1_chr1_-_260992291_260992366	20.5604	Hoxa1	ENSRNOT00000035415|Slit1|ENSRNOG00000026065|slit guidance ligand 1 [Source:RGD Symbol%3BAcc:69307]	ENSRNOT00000034758|Slit1|ENSRNOG00000026065|slit guidance ligand 1 [Source:RGD Symbol%3BAcc:69307]
rn6_v1_chr2_+_3662763_3662763	19.1818	Hoxa1	ENSRNOT00000017828|Mctp1|ENSRNOG00000013282|multiple C2 and transmembrane domain containing 1 [Source:RGD Symbol%3BAcc:1305199]
rn6_v1_chr7_+_123482255_123482255	17.8616	Hoxa1	ENSRNOT00000064487|LOC688613|ENSRNOG00000043197|hypothetical protein LOC688613 [Source:RGD Symbol%3BAcc:1586487]
rn6_v1_chr2_+_145174876_145174876	17.2581	Hoxa1	ENSRNOT00000040631|Mab21l1|ENSRNOG00000032941|mab-21 like 1 [Source:RGD Symbol%3BAcc:1589984]
rn6_v1_chr4_-_170860225_170860225	16.2449	Hoxa1	ENSRNOT00000007577|Mgp|ENSRNOG00000005695|matrix Gla protein [Source:RGD Symbol%3BAcc:3088]
rn6_v1_chr8_+_82257849_82257849	16.2381	Hoxa1	ENSRNOT00000011963|Gnb5|ENSRNOG00000047799|G protein subunit beta 5 [Source:RGD Symbol%3BAcc:620759]	ENSRNOT00000075708|Gnb5|ENSRNOG00000047799|G protein subunit beta 5 [Source:RGD Symbol%3BAcc:620759]
rn6_v1_chr3_-_158328881_158328881	16.1776	Hoxa1	ENSRNOT00000044466|Ptprt|ENSRNOG00000032656|protein tyrosine phosphatase%2C receptor type%2C T [Source:RGD Symbol%3BAcc:1309653]
rn6_v1_chr1_+_264796812_264796812	15.5841	Hoxa1	ENSRNOT00000021171|Sfxn3|ENSRNOG00000015442|sideroflexin 3 [Source:RGD Symbol%3BAcc:620716]
rn6_v1_chr5_+_124021366_124021366	15.1461	Hoxa1	ENSRNOT00000009977|Dab1|ENSRNOG00000007410|DAB1%2C reelin adaptor protein [Source:RGD Symbol%3BAcc:628770]
rn6_v1_chr7_+_70753101_70753101	13.6875	Hoxa1	ENSRNOT00000090001|R3hdm2|ENSRNOG00000007801|R3H domain containing 2 [Source:RGD Symbol%3BAcc:1310066]
rn6_v1_chr7_+_29435444_29435444	12.9389	Hoxa1	ENSRNOT00000008613|Slc5a8|ENSRNOG00000006367|solute carrier family 5 member 8 [Source:RGD Symbol%3BAcc:1564146]
rn6_v1_chr6_+_26387877_26387877	12.2417	Hoxa1	ENSRNOT00000076105|Fndc4|ENSRNOG00000051056|
rn6_v1_chr17_+_4846789_4846789	12.0723	Hoxa1	ENSRNOT00000073271|Gas1|ENSRNOG00000050485|growth arrest-specific 1 [Source:RGD Symbol%3BAcc:1586820]
rn6_v1_chr20_-_31956649_31956649	11.9496	Hoxa1	ENSRNOT00000072429|Hk1|ENSRNOG00000046891|hexokinase 1 [Source:RGD Symbol%3BAcc:2796]
rn6_v1_chr7_+_124680294_124680294	11.8579	Hoxa1	ENSRNOT00000014720|Mpped1|ENSRNOG00000010834|metallophosphoesterase domain containing 1 [Source:RGD Symbol%3BAcc:1308244]
rn6_v1_chr13_+_84474319_84474362	11.8199	Hoxa1	ENSRNOT00000031367|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000072244|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000072897|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000064168|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000074954|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]	ENSRNOT00000073696|Ildr2|ENSRNOG00000025151|immunoglobulin-like domain containing receptor 2 [Source:RGD Symbol%3BAcc:1596420]
rn6_v1_chr15_+_41448064_41448064	11.4003	Hoxa1	ENSRNOT00000019551|Sacs|ENSRNOG00000014509|sacsin molecular chaperone [Source:RGD Symbol%3BAcc:1307281]
rn6_v1_chr12_+_11179329_11179329	11.3359	Hoxa1	ENSRNOT00000001302|Zfp394|ENSRNOG00000000983|zinc finger protein 394 [Source:RGD Symbol%3BAcc:628654]
rn6_v1_chr10_-_25910298_25910325	10.8265	Hoxa1	ENSRNOT00000065633|Ccng1|ENSRNOG00000003256|cyclin G1 [Source:RGD Symbol%3BAcc:2295]	ENSRNOT00000079646|Ccng1|ENSRNOG00000003256|cyclin G1 [Source:RGD Symbol%3BAcc:2295]
rn6_v1_chr5_-_7941822_7941822	10.4832	Hoxa1	ENSRNOT00000079917|Prex2|ENSRNOG00000005391|phosphatidylinositol-3%2C4%2C5-trisphosphate-dependent Rac exchange factor 2 [Source:RGD Symbol%3BAcc:1307865]
rn6_v1_chr12_+_49419582_49419582	10.0513	Hoxa1	ENSRNOT00000082998|RGD1306556|ENSRNOG00000052424|similar to hypothetical protein A530094D01 [Source:RGD Symbol%3BAcc:1306556]
rn6_v1_chr14_+_3506339_3506339	9.82412	Hoxa1	ENSRNOT00000002867|Tgfbr3|ENSRNOG00000002093|transforming growth factor beta receptor 3 [Source:RGD Symbol%3BAcc:61821]
rn6_v1_chr10_-_14443010_14443010	9.78776	Hoxa1	ENSRNOT00000022142|Tmem204|ENSRNOG00000016494|transmembrane protein 204 [Source:RGD Symbol%3BAcc:1359314]
rn6_v1_chr5_-_6083083_6083083	9.64111	Hoxa1	ENSRNOT00000072411|Sulf1|ENSRNOG00000009037|sulfatase 1 [Source:RGD Symbol%3BAcc:708554]
rn6_v1_chr10_+_84200880_84200880	9.3887	Hoxa1	ENSRNOT00000011213|Hoxb2|ENSRNOG00000008365|homeobox B2 [Source:RGD Symbol%3BAcc:2319509]
rn6_v1_chr19_-_39267928_39267928	9.19267	Hoxa1	ENSRNOT00000027686|Tmed6|ENSRNOG00000020406|transmembrane p24 trafficking protein 6 [Source:RGD Symbol%3BAcc:1305260]
rn6_v1_chr12_+_13323547_13323547	8.73717	Hoxa1	ENSRNOT00000074138|Zfp853|ENSRNOG00000030579|zinc finger protein 853 [Source:RGD Symbol%3BAcc:1563095]
rn6_v1_chr11_-_25078740_25078740	8.70464	Hoxa1	ENSRNOT00000002109|Cyyr1|ENSRNOG00000001544|cysteine and tyrosine rich 1 [Source:RGD Symbol%3BAcc:1359578]
rn6_v1_chr12_+_17735740_17735740	8.5581	Hoxa1	ENSRNOT00000001775|Pdgfa|ENSRNOG00000001312|platelet derived growth factor subunit A [Source:RGD Symbol%3BAcc:3282]
rn6_v1_chr3_-_133122691_133122691	8.55611	Hoxa1	ENSRNOT00000083637|Tasp1|ENSRNOG00000004493|taspase 1 [Source:RGD Symbol%3BAcc:1308591]
rn6_v1_chr13_+_71107465_71107465	8.40762	Hoxa1	ENSRNOT00000003239|Rgs8|ENSRNOG00000002369|regulator of G-protein signaling 8 [Source:RGD Symbol%3BAcc:3571]
rn6_v1_chr10_-_8498422_8498422	8.17949	Hoxa1	ENSRNOT00000082332|Rbfox1|ENSRNOG00000002827|RNA binding protein%2C fox-1 homolog 1 [Source:RGD Symbol%3BAcc:1311210]
rn6_v1_chrX_+_82143789_82143789	7.49603	Hoxa1	ENSRNOT00000003724|Pou3f4|ENSRNOG00000002784|POU class 3 homeobox 4 [Source:RGD Symbol%3BAcc:61947]
rn6_v1_chr16_+_24980723_24980723	7.40965	Hoxa1	ENSRNOT00000082142|Tma16|ENSRNOG00000014188|translation machinery associated 16 homolog [Source:RGD Symbol%3BAcc:1305222]
rn6_v1_chr4_+_31333970_31333970	7.27548	Hoxa1	ENSRNOT00000064866|LOC100911994|ENSRNOG00000050855|coiled-coil domain-containing protein 132-like [Source:RGD Symbol%3BAcc:6489220]
rn6_v1_chr15_-_18675431_18675431	7.19612	Hoxa1	ENSRNOT00000080794|Abhd6|ENSRNOG00000008167|abhydrolase domain containing 6 [Source:RGD Symbol%3BAcc:1359323]
rn6_v1_chr16_+_4997461_4997461	7.18983	Hoxa1	ENSRNOT00000071042|LOC102547963|ENSRNOG00000047131|leucine-rich repeat and transmembrane domain-containing protein 1-like [Source:RGD Symbol%3BAcc:7612006]
rn6_v1_chr10_-_87153982_87153982	6.35064	Hoxa1	ENSRNOT00000014414|Krt222|ENSRNOG00000010839|keratin 222 [Source:RGD Symbol%3BAcc:1560383]
rn6_v1_chr12_+_13810180_13810296	5.69633	Hoxa1	ENSRNOT00000084865|Tnrc18|ENSRNOG00000024482|trinucleotide repeat containing 18 [Source:RGD Symbol%3BAcc:1307540]	ENSRNOT00000038203|Tnrc18|ENSRNOG00000024482|trinucleotide repeat containing 18 [Source:RGD Symbol%3BAcc:1307540]
rn6_v1_chr1_+_243375981_243375981	5.11482	Hoxa1	ENSRNOT00000080689|Kank1|ENSRNOG00000016023|KN motif and ankyrin repeat domains 1 [Source:RGD Symbol%3BAcc:1307714]
rn6_v1_chr1_-_215838209_215838209	4.80893	Hoxa1	ENSRNOT00000050760|Igf2|ENSRNOG00000020369|insulin-like growth factor 2 [Source:RGD Symbol%3BAcc:2870]
rn6_v1_chr20_-_6556350_6556350	4.02925	Hoxa1	ENSRNOT00000035819|Lemd2|ENSRNOG00000025864|LEM domain containing 2 [Source:RGD Symbol%3BAcc:1305341]
rn6_v1_chr1_-_222350173_222350173	3.93019	Hoxa1	ENSRNOT00000030625|Flrt1|ENSRNOG00000022428|fibronectin leucine rich transmembrane protein 1 [Source:RGD Symbol%3BAcc:1565152]
rn6_v1_chr5_+_168078748_168078748	3.43271	Hoxa1	ENSRNOT00000024798|Uts2|ENSRNOG00000018393|urotensin 2 [Source:RGD Symbol%3BAcc:3930]
rn6_v1_chr10_-_95062987_95062987	3.09649	Hoxa1	ENSRNOT00000019781|Smurf2|ENSRNOG00000014623|SMAD specific E3 ubiquitin protein ligase 2 [Source:RGD Symbol%3BAcc:1310067]
rn6_v1_chr2_+_248398917_248398917	2.94356	Hoxa1	ENSRNOT00000045855|Gbp1|ENSRNOG00000023943|guanylate binding protein 1 [Source:RGD Symbol%3BAcc:1311877]
rn6_v1_chr3_+_148438939_148438939	2.83896	Hoxa1	ENSRNOT00000064196|Ttll9|ENSRNOG00000008596|tubulin tyrosine ligase like 9 [Source:RGD Symbol%3BAcc:1359622]
rn6_v1_chr6_+_145546595_145546595	2.61527	Hoxa1	ENSRNOT00000007112|Rapgef5|ENSRNOG00000005271|Rap guanine nucleotide exchange factor 5 [Source:RGD Symbol%3BAcc:1561668]
rn6_v1_chr8_-_19386384_19386384	2.5439	Hoxa1	ENSRNOT00000051572|Olr1145|ENSRNOG00000050124|olfactory receptor 1145 [Source:RGD Symbol%3BAcc:1333466]
rn6_v1_chr13_+_75059927_75059927	2.25323	Hoxa1	ENSRNOT00000080801|LOC680254|ENSRNOG00000057851|hypothetical protein LOC680254 [Source:RGD Symbol%3BAcc:1594177]
rn6_v1_chr5_-_155381732_155381732	2.07688	Hoxa1	ENSRNOT00000033670|Zbtb40|ENSRNOG00000022039|zinc finger and BTB domain containing 40 [Source:RGD Symbol%3BAcc:1309866]
rn6_v1_chr16_-_62241361_62241361	1.93844	Hoxa1	ENSRNOT00000090036|Gsr|ENSRNOG00000014915|glutathione-disulfide reductase [Source:RGD Symbol%3BAcc:621747]
rn6_v1_chr16_+_83522162_83522162	1.88529	Hoxa1	ENSRNOT00000057386|Col4a1|ENSRNOG00000016281|collagen type IV alpha 1 chain [Source:RGD Symbol%3BAcc:1307148]
rn6_v1_chr16_+_34795971_34795971	1.85296	Hoxa1	ENSRNOT00000043510|LOC100912321|ENSRNOG00000032890|myeloid-associated differentiation marker-like [Source:RGD Symbol%3BAcc:6487726]
rn6_v1_chr1_+_230030914_230030914	1.69259	Hoxa1	ENSRNOT00000075730|Olr354|ENSRNOG00000061455|olfactory receptor 354 [Source:RGD Symbol%3BAcc:1333250]
rn6_v1_chr1_+_229443102_229443102	1.57649	Hoxa1	ENSRNOT00000067320|Olr334|ENSRNOG00000042023|olfactory receptor 334 [Source:RGD Symbol%3BAcc:1334079]
rn6_v1_chr1_+_229480184_229480184	1.35802	Hoxa1	ENSRNOT00000044115|Olr387|ENSRNOG00000030201|olfactory receptor 387 [Source:RGD Symbol%3BAcc:1333407]
rn6_v1_chr17_-_66397653_66397653	1.30486	Hoxa1	ENSRNOT00000024098|Actn2|ENSRNOG00000017833|actinin alpha 2 [Source:RGD Symbol%3BAcc:1308097]
rn6_v1_chr2_+_205488182_205488182	1.15927	Hoxa1	ENSRNOT00000024270|Sike1|ENSRNOG00000017502|suppressor of IKBKE 1 [Source:RGD Symbol%3BAcc:1311316]
rn6_v1_chr2_-_209582627_209582627	0.968306	Hoxa1	ENSRNOT00000024351|Olr392|ENSRNOG00000018112|olfactory receptor 392 [Source:RGD Symbol%3BAcc:1333023]
rn6_v1_chr4_+_149908375_149908375	0.947557	Hoxa1	ENSRNOT00000019504|LOC100909657|ENSRNOG00000014552|uncharacterized LOC100909657 [Source:RGD Symbol%3BAcc:6502210]
rn6_v1_chr1_+_167811491_167811491	0.789201	Hoxa1	ENSRNOT00000072109|LOC684171|ENSRNOG00000050377|similar to olfactory receptor 555 [Source:RGD Symbol%3BAcc:1593885]
rn6_v1_chr2_+_92549479_92549479	0.695365	Hoxa1	ENSRNOT00000082912|tGap1|ENSRNOG00000022511|GTPase activating protein testicular GAP1 [Source:RGD Symbol%3BAcc:1359558]
rn6_v1_chr6_+_26566494_26566494	0.617292	Hoxa1	ENSRNOT00000079292|Gtf3c2|ENSRNOG00000056904|general transcription factor IIIC subunit 2 [Source:RGD Symbol%3BAcc:1560392]
rn6_v1_chr10_-_62366044_62366044	0.384555	Hoxa1	ENSRNOT00000045673|Olr1474|ENSRNOG00000050809|olfactory receptor 1474 [Source:RGD Symbol%3BAcc:1332851]
rn6_v1_chr16_-_20640720_20640720	0.374252	Hoxa1	ENSRNOT00000083254|AABR07024877.1|ENSRNOG00000058038|
rn6_v1_chr10_-_65507581_65507581	0.213754	Hoxa1	ENSRNOT00000016759|Supt6h|ENSRNOG00000012240|SPT6 homolog%2C histone chaperone [Source:RGD Symbol%3BAcc:1309290]
rn6_v1_chr8_+_20535478_20535478	0.0509099	Hoxa1	ENSRNOT00000049066|Olr1174|ENSRNOG00000049712|olfactory receptor 1174 [Source:RGD Symbol%3BAcc:1332742]
