rn6_v1_chr4_-_170740274_170740274	10.3216	Hoxa3	ENSRNOT00000012212|Gucy2c|ENSRNOG00000009031|guanylate cyclase 2C [Source:RGD Symbol%3BAcc:2771]
rn6_v1_chr9_-_119190698_119190698	7.89101	Hoxa3	ENSRNOT00000021534|Tgif1|ENSRNOG00000015906|TGFB-induced factor homeobox 1 [Source:RGD Symbol%3BAcc:1310517]
rn6_v1_chr16_+_2634603_2634603	7.02513	Hoxa3	ENSRNOT00000019113|Hesx1|ENSRNOG00000014133|HESX homeobox 1 [Source:RGD Symbol%3BAcc:1563858]
rn6_v1_chr17_-_84247038_84247038	6.44515	Hoxa3	ENSRNOT00000068553|Nebl|ENSRNOG00000049452|nebulette [Source:RGD Symbol%3BAcc:1308315]
rn6_v1_chr8_+_22648323_22648323	5.77463	Hoxa3	ENSRNOT00000013165|Smarca4|ENSRNOG00000009271|SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 4 [Source:RGD Symbol%3BAcc:621728]
rn6_v1_chr12_-_45801842_45801842	5.75843	Hoxa3	ENSRNOT00000078837|AABR07036513.1|ENSRNOG00000059134|
rn6_v1_chr1_-_101095594_101095594	5.62938	Hoxa3	ENSRNOT00000027944|Fcgrt|ENSRNOG00000020583|Fc fragment of IgG receptor and transporter [Source:RGD Symbol%3BAcc:61811]
rn6_v1_chr3_-_165537940_165537940	5.07297	Hoxa3	ENSRNOT00000071119|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]	ENSRNOT00000070964|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]
rn6_v1_chr7_-_73130740_73130740	4.58206	Hoxa3	ENSRNOT00000075584|9430069I07Rik|ENSRNOG00000046924|RIKEN cDNA 9430069I07 gene [Source:MGI Symbol%3BAcc:MGI:1924608]
rn6_v1_chr12_-_47142852_47142852	3.96997	Hoxa3	ENSRNOT00000001591|Pop5|ENSRNOG00000001199|POP5 homolog%2C ribonuclease P/MRP subunit [Source:RGD Symbol%3BAcc:1311819]
rn6_v1_chr2_+_266315036_266315036	3.73584	Hoxa3	ENSRNOT00000055245|Wls|ENSRNOG00000036816|wntless Wnt ligand secretion mediator [Source:RGD Symbol%3BAcc:735139]
rn6_v1_chr10_+_61685645_61685645	3.64201	Hoxa3	ENSRNOT00000003933|Mnt|ENSRNOG00000002894|MAX network transcriptional repressor [Source:RGD Symbol%3BAcc:1308683]
rn6_v1_chr7_-_143016040_143016040	3.59407	Hoxa3	ENSRNOT00000029697|Krt80|ENSRNOG00000025994|keratin 80 [Source:RGD Symbol%3BAcc:1359177]
rn6_v1_chr3_-_90751055_90751055	3.44803	Hoxa3	ENSRNOT00000040741|LOC499843|ENSRNOG00000032177|LRRGT00091 [Source:RGD Symbol%3BAcc:1560877]
rn6_v1_chr20_+_45458558_45458558	2.79649	Hoxa3	ENSRNOT00000000713|Cdk19|ENSRNOG00000000583|cyclin-dependent kinase 19 [Source:RGD Symbol%3BAcc:1305435]
rn6_v1_chr20_+_42966140_42966140	2.5094	Hoxa3	ENSRNOT00000000707|Marcks|ENSRNOG00000000579|myristoylated alanine rich protein kinase C substrate [Source:RGD Symbol%3BAcc:3028]
rn6_v1_chr10_-_87468711_87468711	2.27346	Hoxa3	ENSRNOT00000039983|Krtap3-3|ENSRNOG00000045678|keratin associated protein 3-3 [Source:RGD Symbol%3BAcc:1307504]
rn6_v1_chr5_-_102743417_102743417	2.2652	Hoxa3	ENSRNOT00000067389|Bnc2|ENSRNOG00000006553|basonuclin 2 [Source:RGD Symbol%3BAcc:1310694]
rn6_v1_chr7_-_126382449_126382449	2.17833	Hoxa3	ENSRNOT00000085540|7530416G11Rik|ENSRNOG00000058358|RIKEN cDNA 7530416G11 gene [Source:MGI Symbol%3BAcc:MGI:3036279]
rn6_v1_chr6_+_80108655_80108655	2.11762	Hoxa3	ENSRNOT00000006137|Gemin2|ENSRNOG00000004360|gem (nuclear organelle) associated protein 2 [Source:RGD Symbol%3BAcc:620842]
rn6_v1_chr4_+_147832136_147832136	1.96216	Hoxa3	ENSRNOT00000064603|Rho|ENSRNOG00000011144|rhodopsin [Source:RGD Symbol%3BAcc:3573]
rn6_v1_chr4_-_88684415_88684415	1.80239	Hoxa3	ENSRNOT00000009001|LOC500148|ENSRNOG00000038471|similar to 40S ribosomal protein S7 (S8) [Source:RGD Symbol%3BAcc:1563162]
rn6_v1_chr14_+_23405717_23405717	1.71529	Hoxa3	ENSRNOT00000029805|Tmprss11c|ENSRNOG00000033910|transmembrane protease%2C serine 11C [Source:RGD Symbol%3BAcc:1302967]
rn6_v1_chr1_-_220938814_220938814	1.57025	Hoxa3	ENSRNOT00000028081|Ovol1|ENSRNOG00000020669|ovo like transcriptional repressor 1 [Source:RGD Symbol%3BAcc:1306956]
rn6_v1_chr6_-_108660063_108660063	1.42825	Hoxa3	ENSRNOT00000006240|Arel1|ENSRNOG00000004382|apoptosis resistant E3 ubiquitin protein ligase 1 [Source:RGD Symbol%3BAcc:1307597]
rn6_v1_chr2_-_158133861_158133861	1.16818	Hoxa3	ENSRNOT00000090700|Veph1|ENSRNOG00000012427|ventricular zone expressed PH domain-containing 1 [Source:RGD Symbol%3BAcc:1308217]
rn6_v1_chr1_-_276228574_276228574	1.0799	Hoxa3	ENSRNOT00000021746|Gucy2g|ENSRNOG00000015724|guanylate cyclase 2G [Source:RGD Symbol%3BAcc:621853]
rn6_v1_chr2_-_185852759_185852759	0.690605	Hoxa3	ENSRNOT00000049461|Mab21l2|ENSRNOG00000031398|mab-21 like 2 [Source:RGD Symbol%3BAcc:1595520]
rn6_v1_chr10_-_88000423_88000534	0.629986	Hoxa3	ENSRNOT00000076787|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000046751|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000091394|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]
rn6_v1_chr3_-_104018861_104018861	0.516483	Hoxa3	ENSRNOT00000008387|Chrm5|ENSRNOG00000006397|cholinergic receptor%2C muscarinic 5 [Source:RGD Symbol%3BAcc:620027]
rn6_v1_chr1_+_167758636_167758636	0.386588	Hoxa3	ENSRNOT00000024957|Olr46|ENSRNOG00000018506|olfactory receptor 46 [Source:RGD Symbol%3BAcc:1333293]
rn6_v1_chr2_-_33025271_33025271	0.37444	Hoxa3	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr2_-_170301348_170301348	0.333729	Hoxa3	ENSRNOT00000088131|Si|ENSRNOG00000031067|sucrase-isomaltase [Source:RGD Symbol%3BAcc:3675]
rn6_v1_chr11_-_32550539_32550539	0.288198	Hoxa3	ENSRNOT00000002715|Rcan1|ENSRNOG00000001979|regulator of calcineurin 1 [Source:RGD Symbol%3BAcc:631338]
rn6_v1_chr18_+_16544508_16544508	0.225921	Hoxa3	ENSRNOT00000020601|Elp2|ENSRNOG00000015301|elongator acetyltransferase complex subunit 2 [Source:RGD Symbol%3BAcc:1306419]
