rn6_v1_chr3_-_63836017_63836017	127.058	Hoxa4	ENSRNOT00000030978|AABR07052585.1|ENSRNOG00000022637|
rn6_v1_chr12_+_49761120_49761120	78.1175	Hoxa4	ENSRNOT00000070961|Myo18b|ENSRNOG00000048430|myosin XVIIIb [Source:RGD Symbol%3BAcc:1594542]
rn6_v1_chr11_+_66713888_66713888	76.4292	Hoxa4	ENSRNOT00000003340|Fbxo40|ENSRNOG00000002459|F-box protein 40 [Source:RGD Symbol%3BAcc:1309781]
rn6_v1_chr10_+_53740841_53740841	65.7006	Hoxa4	ENSRNOT00000004295|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr15_-_27819376_27819376	63.0134	Hoxa4	ENSRNOT00000067400|A930018M24Rik|ENSRNOG00000042516|RIKEN cDNA A930018M24 gene [Source:MGI Symbol%3BAcc:MGI:2686053]
rn6_v1_chr8_-_130429132_130429132	62.934	Hoxa4	ENSRNOT00000026261|Hhatl|ENSRNOG00000019404|hedgehog acyltransferase-like [Source:RGD Symbol%3BAcc:1311911]
rn6_v1_chr13_+_52889737_52889737	56.3458	Hoxa4	ENSRNOT00000074366|Cacna1s|ENSRNOG00000046231|calcium voltage-gated channel subunit alpha1 S [Source:RGD Symbol%3BAcc:70983]
rn6_v1_chr10_+_53818818_53818818	54.6655	Hoxa4	ENSRNOT00000057260|Myh8|ENSRNOG00000050042|myosin heavy chain 8 [Source:RGD Symbol%3BAcc:620356]
rn6_v1_chr10_+_53778662_53778662	52.7514	Hoxa4	ENSRNOT00000045718|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr4_-_15859132_15859132	51.6338	Hoxa4	ENSRNOT00000082161|Cacna2d1|ENSRNOG00000033531|calcium voltage-gated channel auxiliary subunit alpha2delta 1 [Source:RGD Symbol%3BAcc:2247]
rn6_v1_chr15_+_4064706_4064706	43.9658	Hoxa4	ENSRNOT00000011956|Synpo2l|ENSRNOG00000008949|synaptopodin 2-like [Source:RGD Symbol%3BAcc:1565434]
rn6_v1_chr10_-_8654892_8654892	43.0024	Hoxa4	ENSRNOT00000066534|Rbfox1|ENSRNOG00000002827|RNA binding protein%2C fox-1 homolog 1 [Source:RGD Symbol%3BAcc:1311210]
rn6_v1_chr9_-_53315915_53315915	42.3692	Hoxa4	ENSRNOT00000038093|Mstn|ENSRNOG00000021294|myostatin [Source:RGD Symbol%3BAcc:3115]
rn6_v1_chr2_+_219598162_219598162	40.8166	Hoxa4	ENSRNOT00000020297|Lrrc39|ENSRNOG00000015117|leucine rich repeat containing 39 [Source:RGD Symbol%3BAcc:1585106]
rn6_v1_chr3_+_168345152_168345152	38.0529	Hoxa4	ENSRNOT00000017654|Dok5|ENSRNOG00000013196|docking protein 5 [Source:RGD Symbol%3BAcc:1562846]
rn6_v1_chr12_-_5685448_5685448	35.6791	Hoxa4	ENSRNOT00000077167|Fry|ENSRNOG00000000894|FRY microtubule binding protein [Source:RGD Symbol%3BAcc:1307034]
rn6_v1_chrX_-_23144324_23144324	34.0475	Hoxa4	ENSRNOT00000000178|Pfkfb1|ENSRNOG00000000165|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 1 [Source:RGD Symbol%3BAcc:3307]	ENSRNOT00000081239|Pfkfb1|ENSRNOG00000000165|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 1 [Source:RGD Symbol%3BAcc:3307]
rn6_v1_chr4_+_172942020_172942020	33.0155	Hoxa4	ENSRNOT00000072450|Lmo3|ENSRNOG00000047450|LIM domain only 3 [Source:RGD Symbol%3BAcc:1561357]
rn6_v1_chr13_-_98478327_98478327	32.5514	Hoxa4	ENSRNOT00000030135|Coq8a|ENSRNOG00000043201|coenzyme Q8A [Source:RGD Symbol%3BAcc:1308245]
rn6_v1_chr8_+_110982777_110982777	31.2689	Hoxa4	ENSRNOT00000010992|Ky|ENSRNOG00000008210|kyphoscoliosis peptidase [Source:RGD Symbol%3BAcc:1305407]
rn6_v1_chr15_+_2734068_2734068	29.5833	Hoxa4	ENSRNOT00000017663|Dusp13|ENSRNOG00000013112|dual specificity phosphatase 13 [Source:RGD Symbol%3BAcc:1359712]
rn6_v1_chr15_+_11298478_11298478	29.2016	Hoxa4	ENSRNOT00000007672|Lrrc3b|ENSRNOG00000005857|leucine rich repeat containing 3B [Source:RGD Symbol%3BAcc:1311897]
rn6_v1_chr2_-_98610368_98610368	28.5663	Hoxa4	ENSRNOT00000011641|Zfhx4|ENSRNOG00000008765|zinc finger homeobox 4 [Source:RGD Symbol%3BAcc:1563022]
rn6_v1_chr10_-_34439470_34439470	27.9753	Hoxa4	ENSRNOT00000072081|Btnl9|ENSRNOG00000046377|butyrophilin-like 9 [Source:RGD Symbol%3BAcc:1590287]
rn6_v1_chr7_+_70807867_70807867	26.1489	Hoxa4	ENSRNOT00000010639|Stac3|ENSRNOG00000008050|SH3 and cysteine rich domain 3 [Source:RGD Symbol%3BAcc:1308964]
rn6_v1_chr6_-_8344574_8344574	24.7769	Hoxa4	ENSRNOT00000009660|Prepl|ENSRNOG00000007326|prolyl endopeptidase-like [Source:RGD Symbol%3BAcc:1310143]
rn6_v1_chr1_-_99632845_99632845	24.6626	Hoxa4	ENSRNOT00000049123|LOC103691107|ENSRNOG00000030089|NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene [Source:RGD Symbol%3BAcc:9202400]
rn6_v1_chr3_-_48536235_48536235	24.5649	Hoxa4	ENSRNOT00000083536|Fap|ENSRNOG00000005679|fibroblast activation protein%2C alpha [Source:RGD Symbol%3BAcc:621253]
rn6_v1_chr1_+_90729274_90729274	23.4237	Hoxa4	ENSRNOT00000047207|RGD1560088|ENSRNOG00000032733|similar to NADH:ubiquinone oxidoreductase B15 subunit [Source:RGD Symbol%3BAcc:1560088]
rn6_v1_chr1_-_192057612_192057612	21.1122	Hoxa4	ENSRNOT00000024471|Ndufab1|ENSRNOG00000018129|NADH:ubiquinone oxidoreductase subunit AB1 [Source:RGD Symbol%3BAcc:1305619]
rn6_v1_chrX_-_42329232_42329232	20.6057	Hoxa4	ENSRNOT00000045705|LOC100361934|ENSRNOG00000034182|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 [Source:RGD Symbol%3BAcc:2319146]
rn6_v1_chr4_+_100166863_100166863	20.4124	Hoxa4	ENSRNOT00000014505|Sftpb|ENSRNOG00000010761|surfactant protein B [Source:RGD Symbol%3BAcc:621700]
rn6_v1_chrX_+_157759624_157759624	20.3714	Hoxa4	ENSRNOT00000003192|LOC686087|ENSRNOG00000002332|similar to motile sperm domain containing 1 [Source:RGD Symbol%3BAcc:1586609]
rn6_v1_chr2_-_104461863_104461863	20.084	Hoxa4	ENSRNOT00000016953|Crh|ENSRNOG00000012703|corticotropin releasing hormone [Source:RGD Symbol%3BAcc:620505]
rn6_v1_chr2_+_42829413_42829413	19.1729	Hoxa4	ENSRNOT00000065528|Actbl2|ENSRNOG00000043292|actin%2C beta-like 2 [Source:RGD Symbol%3BAcc:1309504]
rn6_v1_chr2_+_252771017_252771017	18.7443	Hoxa4	ENSRNOT00000075452|Ttll7|ENSRNOG00000031997|tubulin tyrosine ligase like 7 [Source:RGD Symbol%3BAcc:1566117]	ENSRNOT00000055318|Ttll7|ENSRNOG00000031997|tubulin tyrosine ligase like 7 [Source:RGD Symbol%3BAcc:1566117]
rn6_v1_chr1_-_275882444_275882444	18.6716	Hoxa4	ENSRNOT00000083215|Gpam|ENSRNOG00000015124|glycerol-3-phosphate acyltransferase%2C mitochondrial [Source:RGD Symbol%3BAcc:61847]
rn6_v1_chr16_+_54332660_54332660	18.5541	Hoxa4	ENSRNOT00000037685|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chrM_+_5323_5323	17.9584	Hoxa4	ENSRNOT00000050156|Mt-co1|ENSRNOG00000034234|mitochondrially encoded cytochrome c oxidase 1 [Source:RGD Symbol%3BAcc:621871]
rn6_v1_chrM_+_3904_3904	17.8577	Hoxa4	ENSRNOT00000040993|Mt-nd2|ENSRNOG00000031033|mitochondrially encoded NADH dehydrogenase 2 [Source:RGD Symbol%3BAcc:620556]
rn6_v1_chr18_+_30527705_30527705	16.764	Hoxa4	ENSRNOT00000027168|Pcdhb14|ENSRNOG00000020059|protocadherin beta 14 [Source:RGD Symbol%3BAcc:1307591]
rn6_v1_chr14_-_13058172_13058172	16.4701	Hoxa4	ENSRNOT00000002746|Prdm8|ENSRNOG00000002004|PR/SET domain 8 [Source:RGD Symbol%3BAcc:1311628]	ENSRNOT00000071706|Prdm8|ENSRNOG00000002004|PR/SET domain 8 [Source:RGD Symbol%3BAcc:1311628]
rn6_v1_chr16_-_27472687_27472687	16.1507	Hoxa4	ENSRNOT00000046984|AABR07025074.1|ENSRNOG00000032550|
rn6_v1_chr20_+_25990656_25990656	15.9467	Hoxa4	ENSRNOT00000081254|Lrrtm3|ENSRNOG00000026466|leucine rich repeat transmembrane neuronal 3 [Source:RGD Symbol%3BAcc:1304866]
rn6_v1_chr14_+_7949239_7949239	15.859	Hoxa4	ENSRNOT00000044617|Ndufb4l1|ENSRNOG00000034289|NADH dehydrogenase (ubiquinone) 1 beta subcomplex%2C 4-like 1 [Source:RGD Symbol%3BAcc:1560413]
rn6_v1_chr7_-_69982592_69982592	15.2238	Hoxa4	ENSRNOT00000040010|RGD1564306|ENSRNOG00000032335|similar to developmental pluripotency associated 5 [Source:RGD Symbol%3BAcc:1564306]
rn6_v1_chr10_-_98469799_98469799	15.1934	Hoxa4	ENSRNOT00000087502|Abca9|ENSRNOG00000059326|ATP binding cassette subfamily A member 9 [Source:RGD Symbol%3BAcc:1305931]	ENSRNOT00000088646|Abca9|ENSRNOG00000059326|ATP binding cassette subfamily A member 9 [Source:RGD Symbol%3BAcc:1305931]
rn6_v1_chr13_-_36290531_36290531	14.475	Hoxa4	ENSRNOT00000071388|Steap3|ENSRNOG00000049471|STEAP3 metalloreductase [Source:RGD Symbol%3BAcc:708552]
rn6_v1_chr16_-_74700815_74700815	14.1713	Hoxa4	ENSRNOT00000081297|Thsd1|ENSRNOG00000012108|thrombospondin type 1 domain containing 1 [Source:RGD Symbol%3BAcc:1306998]
rn6_v1_chr2_+_196334626_196334631	13.6882	Hoxa4	ENSRNOT00000050914|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]	ENSRNOT00000028645|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]	ENSRNOT00000090729|Sema6c|ENSRNOG00000021101|semaphorin 6C [Source:RGD Symbol%3BAcc:3659]
rn6_v1_chr4_+_119225040_119225040	13.4506	Hoxa4	ENSRNOT00000012365|Bmp10|ENSRNOG00000009316|bone morphogenetic protein 10 [Source:RGD Symbol%3BAcc:1562986]
rn6_v1_chr4_+_129574264_129574264	13.3216	Hoxa4	ENSRNOT00000010185|Arl6ip5|ENSRNOG00000006818|ADP-ribosylation factor like GTPase 6 interacting protein 5 [Source:RGD Symbol%3BAcc:708572]
rn6_v1_chrX_+_107496072_107496072	13.2172	Hoxa4	ENSRNOT00000003283|Plp1|ENSRNOG00000002419|proteolipid protein 1 [Source:RGD Symbol%3BAcc:3354]
rn6_v1_chr2_-_46544457_46544457	13.2042	Hoxa4	ENSRNOT00000015680|Fst|ENSRNOG00000011631|follistatin [Source:RGD Symbol%3BAcc:2633]
rn6_v1_chr11_-_782954_782954	13.1944	Hoxa4	ENSRNOT00000040065|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr13_+_90943255_90943255	13.1162	Hoxa4	ENSRNOT00000011539|Vsig8|ENSRNOG00000008668|V-set and immunoglobulin domain containing 8 [Source:RGD Symbol%3BAcc:1562464]
rn6_v1_chr1_-_255557055_255557055	12.6312	Hoxa4	ENSRNOT00000033780|Fgfbp3|ENSRNOG00000022796|fibroblast growth factor binding protein 3 [Source:RGD Symbol%3BAcc:1560326]
rn6_v1_chr11_-_4397361_4397361	12.5195	Hoxa4	ENSRNOT00000046370|Cadm2|ENSRNOG00000030840|cell adhesion molecule 2 [Source:RGD Symbol%3BAcc:1305678]
rn6_v1_chr10_+_13836128_13836128	12.2233	Hoxa4	ENSRNOT00000012720|Pgp|ENSRNOG00000009536|phosphoglycolate phosphatase [Source:RGD Symbol%3BAcc:1307773]
rn6_v1_chr4_-_166869399_166869399	12.1563	Hoxa4	ENSRNOT00000007521|Tas2r121|ENSRNOG00000005717|taste receptor%2C type 2%2C member 121 [Source:RGD Symbol%3BAcc:620738]
rn6_v1_chr10_+_89251370_89251370	12.0672	Hoxa4	ENSRNOT00000076820|Aoc3|ENSRNOG00000051307|amine oxidase%2C copper containing 3 [Source:RGD Symbol%3BAcc:62058]
rn6_v1_chr7_-_143408276_143408277	11.9168	Hoxa4	ENSRNOT00000013122|Krt73|ENSRNOG00000025087|keratin 73 [Source:RGD Symbol%3BAcc:1359597]	ENSRNOT00000091540|Krt73|ENSRNOG00000025087|keratin 73 [Source:RGD Symbol%3BAcc:1359597]
rn6_v1_chr15_-_62200837_62200837	10.8043	Hoxa4	ENSRNOT00000017599|Pcdh8|ENSRNOG00000013101|protocadherin 8 [Source:RGD Symbol%3BAcc:69350]
rn6_v1_chr1_-_174620064_174620064	10.3539	Hoxa4	ENSRNOT00000016224|Tmem41b|ENSRNOG00000010752|transmembrane protein 41B [Source:RGD Symbol%3BAcc:1310870]
rn6_v1_chr13_-_97838228_97838228	10.2544	Hoxa4	ENSRNOT00000003618|Tfb2m|ENSRNOG00000002695|transcription factor B2%2C mitochondrial [Source:RGD Symbol%3BAcc:1307091]
rn6_v1_chr7_+_12619774_12619774	10.0526	Hoxa4	ENSRNOT00000015257|Med16|ENSRNOG00000011315|mediator complex subunit 16 [Source:RGD Symbol%3BAcc:1308001]
rn6_v1_chr4_+_56744561_56744561	9.9803	Hoxa4	ENSRNOT00000009737|Atp6v1f|ENSRNOG00000007392|ATPase H+ transporting V1 subunit F [Source:RGD Symbol%3BAcc:621552]
rn6_v1_chr20_+_25990304_25990304	9.95338	Hoxa4	ENSRNOT00000033980|Lrrtm3|ENSRNOG00000026466|leucine rich repeat transmembrane neuronal 3 [Source:RGD Symbol%3BAcc:1304866]
rn6_v1_chr9_+_81566074_81566074	9.88263	Hoxa4	ENSRNOT00000074131|Pnkd|ENSRNOG00000014806|paroxysmal nonkinesigenic dyskinesia [Source:RGD Symbol%3BAcc:2300155]	ENSRNOT00000046229|Pnkd|ENSRNOG00000014806|paroxysmal nonkinesigenic dyskinesia [Source:RGD Symbol%3BAcc:2300155]	ENSRNOT00000090383|Pnkd|ENSRNOG00000014806|paroxysmal nonkinesigenic dyskinesia [Source:RGD Symbol%3BAcc:2300155]
rn6_v1_chr20_-_11638483_11638483	9.76606	Hoxa4	ENSRNOT00000067800|Krtap12-2|ENSRNOG00000042956|keratin associated protein 12-2 [Source:RGD Symbol%3BAcc:2319746]
rn6_v1_chr14_-_10395047_10395047	9.4254	Hoxa4	ENSRNOT00000002936|Gpat3|ENSRNOG00000002159|glycerol-3-phosphate acyltransferase 3 [Source:RGD Symbol%3BAcc:1565703]
rn6_v1_chr1_+_228395558_228395558	8.9994	Hoxa4	ENSRNOT00000065411|Osbp|ENSRNOG00000021057|oxysterol binding protein [Source:RGD Symbol%3BAcc:1308069]
rn6_v1_chr3_-_71798531_71798531	8.70143	Hoxa4	ENSRNOT00000088170|Calcrl|ENSRNOG00000054695|calcitonin receptor like receptor [Source:RGD Symbol%3BAcc:2255]
rn6_v1_chr11_-_71136673_71136673	8.63577	Hoxa4	ENSRNOT00000042240|Fyttd1|ENSRNOG00000034233|forty-two-three domain containing 1 [Source:RGD Symbol%3BAcc:1306899]
rn6_v1_chr5_-_105582375_105582375	8.58833	Hoxa4	ENSRNOT00000083373|Slc24a2|ENSRNOG00000008169|solute carrier family 24 member 2 [Source:RGD Symbol%3BAcc:628650]
rn6_v1_chr14_-_2032593_2032593	8.41209	Hoxa4	ENSRNOT00000000037|Fgfrl1|ENSRNOG00000024207|fibroblast growth factor receptor-like 1 [Source:RGD Symbol%3BAcc:735156]
rn6_v1_chr18_+_30820321_30820321	8.41103	Hoxa4	ENSRNOT00000060472|Pcdhga3|ENSRNOG00000039461|protocadherin gamma subfamily A%2C 3 [Source:RGD Symbol%3BAcc:1598664]
rn6_v1_chr5_-_711033_711033	8.39572	Hoxa4	ENSRNOT00000024199|Crispld1|ENSRNOG00000017773|cysteine-rich secretory protein LCCL domain containing 1 [Source:RGD Symbol%3BAcc:1564813]
rn6_v1_chr20_-_34679779_34679779	8.28978	Hoxa4	ENSRNOT00000078420|Cep85l|ENSRNOG00000000414|centrosomal protein 85-like [Source:RGD Symbol%3BAcc:2319745]
rn6_v1_chr10_+_39850818_39850818	8.24309	Hoxa4	ENSRNOT00000012671|Fnip1|ENSRNOG00000009104|folliculin interacting protein 1 [Source:RGD Symbol%3BAcc:2318339]
rn6_v1_chr8_+_48718329_48718329	7.9607	Hoxa4	ENSRNOT00000089763|Slc37a4|ENSRNOG00000011361|solute carrier family 37 member 4 [Source:RGD Symbol%3BAcc:62066]
rn6_v1_chr18_+_30509393_30509393	7.86708	Hoxa4	ENSRNOT00000043846|Pcdhb12|ENSRNOG00000033719|protocadherin beta 12 [Source:RGD Symbol%3BAcc:3266]
rn6_v1_chr18_-_17716880_17716880	7.73212	Hoxa4	ENSRNOT00000061151|Celf4|ENSRNOG00000014503|CUGBP%2C Elav-like family member 4 [Source:RGD Symbol%3BAcc:1307630]
rn6_v1_chr11_-_62451149_62451184	7.64997	Hoxa4	ENSRNOT00000093686|Zbtb20|ENSRNOG00000056716|zinc finger and BTB domain containing 20 [Source:RGD Symbol%3BAcc:1560387]	ENSRNOT00000081443|Zbtb20|ENSRNOG00000056716|zinc finger and BTB domain containing 20 [Source:RGD Symbol%3BAcc:1560387]
rn6_v1_chr10_-_87954055_87954055	7.58645	Hoxa4	ENSRNOT00000018048|Krt34|ENSRNOG00000051302|keratin 34 [Source:RGD Symbol%3BAcc:1306530]
rn6_v1_chr10_-_87248572_87248632	7.4283	Hoxa4	ENSRNOT00000066637|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]	ENSRNOT00000085677|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]
rn6_v1_chr12_+_24367199_24367199	7.1559	Hoxa4	ENSRNOT00000001971|Fkbp6|ENSRNOG00000001451|FK506 binding protein 6 [Source:RGD Symbol%3BAcc:1308926]
rn6_v1_chr6_-_51019407_51019407	7.0702	Hoxa4	ENSRNOT00000011659|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr1_-_173469699_173469699	6.83509	Hoxa4	ENSRNOT00000040345|Olr281|ENSRNOG00000049832|olfactory receptor 281 [Source:RGD Symbol%3BAcc:1334171]
rn6_v1_chr6_+_73358112_73358112	6.75604	Hoxa4	ENSRNOT00000041373|Arhgap5|ENSRNOG00000004696|Rho GTPase activating protein 5 [Source:RGD Symbol%3BAcc:1308507]
rn6_v1_chrX_+_76083549_76083549	6.7346	Hoxa4	ENSRNOT00000003573|Magee1|ENSRNOG00000002660|MAGE family member E1 [Source:RGD Symbol%3BAcc:1560259]
rn6_v1_chr3_+_95715193_95715193	6.64816	Hoxa4	ENSRNOT00000089525|Pax6|ENSRNOG00000004410|paired box 6 [Source:RGD Symbol%3BAcc:3258]
rn6_v1_chrX_-_13279082_13279099	6.51069	Hoxa4	ENSRNOT00000051898|Tspan7|ENSRNOG00000003229|tetraspanin 7 [Source:RGD Symbol%3BAcc:1589725]	ENSRNOT00000060857|Tspan7|ENSRNOG00000003229|tetraspanin 7 [Source:RGD Symbol%3BAcc:1589725]
rn6_v1_chr3_+_56862691_56862691	6.36985	Hoxa4	ENSRNOT00000087712|Gad1|ENSRNOG00000000007|glutamate decarboxylase 1 [Source:RGD Symbol%3BAcc:2652]
rn6_v1_chr18_+_30387937_30387937	6.22847	Hoxa4	ENSRNOT00000027210|Pcdhb4|ENSRNOG00000027469|protocadherin beta 4 [Source:RGD Symbol%3BAcc:1308912]
rn6_v1_chr3_-_161115313_161115313	6.20168	Hoxa4	ENSRNOT00000043716|Wfdc9|ENSRNOG00000031380|WAP four-disulfide core domain 9 [Source:RGD Symbol%3BAcc:1303087]
rn6_v1_chr6_+_8219385_8219385	6.16245	Hoxa4	ENSRNOT00000040509|Ppm1b|ENSRNOG00000030667|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1B [Source:RGD Symbol%3BAcc:3374]
rn6_v1_chr16_+_8823872_8823872	6.02158	Hoxa4	ENSRNOT00000027186|Drgx|ENSRNOG00000020045|dorsal root ganglia homeobox [Source:RGD Symbol%3BAcc:628616]
rn6_v1_chr1_-_149603272_149603272	5.73692	Hoxa4	ENSRNOT00000045582|Olr13|ENSRNOG00000032371|olfactory receptor 13 [Source:RGD Symbol%3BAcc:1334399]
rn6_v1_chr2_+_207930796_207930796	5.39068	Hoxa4	ENSRNOT00000047827|Kcnd3|ENSRNOG00000014686|potassium voltage-gated channel subfamily D member 3 [Source:RGD Symbol%3BAcc:68394]
rn6_v1_chr17_+_60287203_60287203	5.27215	Hoxa4	ENSRNOT00000025585|Armc4|ENSRNOG00000018905|armadillo repeat containing 4 [Source:RGD Symbol%3BAcc:1306933]
rn6_v1_chr4_+_86135050_86135050	5.01322	Hoxa4	ENSRNOT00000081561|Ccdc129|ENSRNOG00000012165|coiled-coil domain containing 129 [Source:RGD Symbol%3BAcc:1561131]
rn6_v1_chr8_-_122311431_122311431	4.99605	Hoxa4	ENSRNOT00000033126|Fbxl2|ENSRNOG00000027099|F-box and leucine-rich repeat protein 2 [Source:RGD Symbol%3BAcc:1562243]
rn6_v1_chr17_+_38457783_38457783	4.86739	Hoxa4	ENSRNOT00000059757|Prl5a2|ENSRNOG00000039075|prolactin family 5%2C subfamily a%2C member 2 [Source:RGD Symbol%3BAcc:1583904]
rn6_v1_chr6_-_51018050_51018050	4.75875	Hoxa4	ENSRNOT00000082691|Gpr22|ENSRNOG00000008423|G protein-coupled receptor 22 [Source:RGD Symbol%3BAcc:1310848]
rn6_v1_chr6_+_97168453_97168453	4.7219	Hoxa4	ENSRNOT00000085790|Syt16|ENSRNOG00000056012|synaptotagmin 16 [Source:RGD Symbol%3BAcc:1564654]
rn6_v1_chr20_-_11620945_11620945	4.55788	Hoxa4	ENSRNOT00000079725|Krtap12-2|ENSRNOG00000057487|keratin associated protein 12-2 [Source:RGD Symbol%3BAcc:2319746]
rn6_v1_chr3_-_66417741_66417741	4.49811	Hoxa4	ENSRNOT00000007662|Neurod1|ENSRNOG00000005609|neuronal differentiation 1 [Source:RGD Symbol%3BAcc:3165]
rn6_v1_chr1_+_167857056_167857056	4.387	Hoxa4	ENSRNOT00000074214|LOC684208|ENSRNOG00000048369|similar to olfactory receptor 557 [Source:RGD Symbol%3BAcc:1592737]
rn6_v1_chr1_+_173012247_173012247	4.28345	Hoxa4	ENSRNOT00000073864|LOC100912217|ENSRNOG00000047847|olfactory receptor 10A3-like [Source:RGD Symbol%3BAcc:6488460]
rn6_v1_chr9_+_3896337_3896337	4.08084	Hoxa4	ENSRNOT00000079166|LOC103693189|ENSRNOG00000057009|protein tyrosine phosphatase type IVA 1 [Source:RGD Symbol%3BAcc:9374124]
rn6_v1_chr2_+_3750094_3750094	4.04351	Hoxa4	ENSRNOT00000064743|Mctp1|ENSRNOG00000013282|multiple C2 and transmembrane domain containing 1 [Source:RGD Symbol%3BAcc:1305199]
rn6_v1_chr13_+_109909053_109909053	3.8303	Hoxa4	ENSRNOT00000090541|AC125873.1|ENSRNOG00000056094|
rn6_v1_chr18_-_786674_786674	3.81789	Hoxa4	ENSRNOT00000021955|Cetn1|ENSRNOG00000016409|centrin 1 [Source:RGD Symbol%3BAcc:620246]
rn6_v1_chr10_-_87286387_87286387	3.75563	Hoxa4	ENSRNOT00000044206|Krt28|ENSRNOG00000011846|keratin 28 [Source:RGD Symbol%3BAcc:1309530]
rn6_v1_chr8_+_94686938_94686938	3.7237	Hoxa4	ENSRNOT00000013285|Ripply2|ENSRNOG00000010004|ripply transcriptional repressor 2 [Source:RGD Symbol%3BAcc:1308746]
rn6_v1_chr12_-_47482961_47482961	3.69927	Hoxa4	ENSRNOT00000001600|Oasl2|ENSRNOG00000028814|2'-5' oligoadenylate synthetase-like 2 [Source:RGD Symbol%3BAcc:1307351]
rn6_v1_chr1_-_22404002_22404002	3.63461	Hoxa4	ENSRNOT00000044098|Taar8a|ENSRNOG00000030414|trace amine-associated receptor 8a [Source:RGD Symbol%3BAcc:631391]
rn6_v1_chr3_-_74991168_74991168	3.50851	Hoxa4	ENSRNOT00000049273|Olr550|ENSRNOG00000050825|olfactory receptor 550 [Source:RGD Symbol%3BAcc:1332922]
rn6_v1_chr7_-_4216833_4216833	3.39921	Hoxa4	ENSRNOT00000003174|Olr982|ENSRNOG00000002333|olfactory receptor 982 [Source:RGD Symbol%3BAcc:1332643]
rn6_v1_chr4_+_87167514_87167514	3.01438	Hoxa4	ENSRNOT00000007821|Fkbp9|ENSRNOG00000005478|FK506 binding protein 9 [Source:RGD Symbol%3BAcc:1549757]
rn6_v1_chrX_+_9436707_9436707	2.96879	Hoxa4	ENSRNOT00000004187|Cask|ENSRNOG00000003054|calcium/calmodulin dependent serine protein kinase [Source:RGD Symbol%3BAcc:62004]
rn6_v1_chr4_+_134398354_134398354	2.94412	Hoxa4	ENSRNOT00000077970|AABR07061577.1|ENSRNOG00000061726|
rn6_v1_chr2_-_1561464_1561464	2.88387	Hoxa4	ENSRNOT00000062055|Cast|ENSRNOG00000010286|calpastatin [Source:RGD Symbol%3BAcc:2278]	ENSRNOT00000062054|Cast|ENSRNOG00000010286|calpastatin [Source:RGD Symbol%3BAcc:2278]	ENSRNOT00000062052|Cast|ENSRNOG00000010286|calpastatin [Source:RGD Symbol%3BAcc:2278]
rn6_v1_chr6_-_67084234_67084234	2.79893	Hoxa4	ENSRNOT00000050372|Nova1|ENSRNOG00000031440|NOVA alternative splicing regulator 1 [Source:RGD Symbol%3BAcc:621345]
rn6_v1_chr7_+_144647587_144647587	2.79265	Hoxa4	ENSRNOT00000022398|Hoxc4|ENSRNOG00000016613|homeo box C4 [Source:RGD Symbol%3BAcc:1586210]
rn6_v1_chr7_-_7753978_7753978	2.76388	Hoxa4	ENSRNOT00000048223|Olr1029|ENSRNOG00000047357|olfactory receptor 1029 [Source:RGD Symbol%3BAcc:1333243]
rn6_v1_chr1_-_163611299_163611299	2.72404	Hoxa4	ENSRNOT00000043788|Emsy|ENSRNOG00000015560|EMSY BRCA2-interacting transcriptional repressor [Source:RGD Symbol%3BAcc:1310712]
rn6_v1_chr8_+_115511974_115511974	2.61338	Hoxa4	ENSRNOT00000067683|Timm8a1|ENSRNOG00000043480|translocase of inner mitochondrial membrane 8 homolog A1 (yeast) [Source:RGD Symbol%3BAcc:621801]
rn6_v1_chr10_+_78111050_78111050	2.5974	Hoxa4	ENSRNOT00000079364|Cox11|ENSRNOG00000052096|COX11 cytochrome c oxidase copper chaperone [Source:RGD Symbol%3BAcc:1309822]
rn6_v1_chr7_+_15621989_15621989	2.54925	Hoxa4	ENSRNOT00000051928|Olr1095|ENSRNOG00000050274|olfactory receptor 1095 [Source:RGD Symbol%3BAcc:1333565]
rn6_v1_chr7_-_6754349_6754349	2.50266	Hoxa4	ENSRNOT00000085061|Olr956|ENSRNOG00000053663|olfactory receptor 956 [Source:RGD Symbol%3BAcc:1334430]
rn6_v1_chr3_+_31802999_31802999	2.4314	Hoxa4	ENSRNOT00000041305|AABR07051996.1|ENSRNOG00000033278|
rn6_v1_chr4_+_108301129_108301129	2.3749	Hoxa4	ENSRNOT00000007993|LRRTM1|ENSRNOG00000006093|leucine rich repeat transmembrane neuronal 1 [Source:RGD Symbol%3BAcc:1585921]
rn6_v1_chr4_-_167145096_167145096	2.23699	Hoxa4	ENSRNOT00000028970|Tas2r116|ENSRNOG00000021366|taste receptor%2C type 2%2C member 116 [Source:RGD Symbol%3BAcc:2314261]
rn6_v1_chr1_-_173456488_173456488	2.10568	Hoxa4	ENSRNOT00000044753|Olr282|ENSRNOG00000047675|olfactory receptor 282 [Source:RGD Symbol%3BAcc:1333752]
rn6_v1_chr3_+_76468294_76468294	2.10194	Hoxa4	ENSRNOT00000037779|Olr619|ENSRNOG00000021473|olfactory receptor 619 [Source:RGD Symbol%3BAcc:1334429]
rn6_v1_chr16_+_60925093_60925093	1.82145	Hoxa4	ENSRNOT00000015813|Tnks|ENSRNOG00000011625|tankyrase [Source:RGD Symbol%3BAcc:1308784]
rn6_v1_chr2_+_193627243_193627243	1.81809	Hoxa4	ENSRNOT00000082934|AABR07012331.1|ENSRNOG00000053250|
rn6_v1_chr15_-_20783063_20783063	1.79579	Hoxa4	ENSRNOT00000083268|Bmp4|ENSRNOG00000009694|bone morphogenetic protein 4 [Source:RGD Symbol%3BAcc:2213]
rn6_v1_chr6_+_48452369_48452369	1.67101	Hoxa4	ENSRNOT00000044310|Myt1l|ENSRNOG00000004269|myelin transcription factor 1-like [Source:RGD Symbol%3BAcc:620550]
rn6_v1_chr18_+_12056113_12056113	1.64293	Hoxa4	ENSRNOT00000038450|Dsg4|ENSRNOG00000022364|desmoglein 4 [Source:RGD Symbol%3BAcc:735015]
rn6_v1_chr2_-_177924970_177924970	1.6271	Hoxa4	ENSRNOT00000029340|Rapgef2|ENSRNOG00000021581|Rap guanine nucleotide exchange factor 2 [Source:RGD Symbol%3BAcc:1306434]
rn6_v1_chr9_-_4945352_4945352	1.49984	Hoxa4	ENSRNOT00000082530|Sult1c3|ENSRNOG00000011269|sulfotransferase family 1C member 3 [Source:RGD Symbol%3BAcc:3768]
rn6_v1_chr2_+_62198562_62198562	1.4853	Hoxa4	ENSRNOT00000087636|Zfr|ENSRNOG00000011627|zinc finger RNA binding protein [Source:RGD Symbol%3BAcc:1311890]
rn6_v1_chr13_-_76049363_76049363	1.3492	Hoxa4	ENSRNOT00000075865|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]	ENSRNOT00000007455|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]
rn6_v1_chrX_+_156552528_156552528	1.20226	Hoxa4	ENSRNOT00000086429|Tex28|ENSRNOG00000051438|testis expressed 28 [Source:RGD Symbol%3BAcc:1582832]
rn6_v1_chr20_-_32628953_32628953	1.15962	Hoxa4	ENSRNOT00000000451|Gprc6a|ENSRNOG00000000401|G protein-coupled receptor%2C class C%2C group 6%2C member A [Source:RGD Symbol%3BAcc:735077]
rn6_v1_chr1_-_169230360_169230360	1.15441	Hoxa4	ENSRNOT00000022740|Olr142|ENSRNOG00000016954|olfactory receptor 142 [Source:RGD Symbol%3BAcc:1334127]
rn6_v1_chr1_-_156327352_156327352	1.06468	Hoxa4	ENSRNOT00000074282|LOC100911776|ENSRNOG00000048071|coiled-coil domain-containing protein 89-like [Source:RGD Symbol%3BAcc:6490972]
rn6_v1_chr8_+_116715755_116715755	1.05996	Hoxa4	ENSRNOT00000090239|Camkv|ENSRNOG00000058938|CaM kinase-like vesicle-associated [Source:RGD Symbol%3BAcc:621488]
rn6_v1_chr2_+_24546536_24546536	1.03118	Hoxa4	ENSRNOT00000014036|Otp|ENSRNOG00000010560|orthopedia homeobox [Source:RGD Symbol%3BAcc:727945]
rn6_v1_chr1_+_201429771_201429771	0.953542	Hoxa4	ENSRNOT00000027836|Plekha1|ENSRNOG00000020497|pleckstrin homology domain containing A1 [Source:RGD Symbol%3BAcc:1564153]
rn6_v1_chr3_-_76279104_76279104	0.923906	Hoxa4	ENSRNOT00000007796|Olr608|ENSRNOG00000005950|olfactory receptor 608 [Source:RGD Symbol%3BAcc:1332892]
rn6_v1_chr4_-_167130996_167130996	0.923798	Hoxa4	ENSRNOT00000040860|Tas2r110|ENSRNOG00000050637|taste receptor%2C type 2%2C member 110 [Source:RGD Symbol%3BAcc:2314263]
rn6_v1_chr9_-_74048244_74048244	0.901445	Hoxa4	ENSRNOT00000018293|Lancl1|ENSRNOG00000013557|LanC like 1 [Source:RGD Symbol%3BAcc:69416]
rn6_v1_chr1_-_129776276_129776276	0.873927	Hoxa4	ENSRNOT00000051402|Arrdc4|ENSRNOG00000010775|arrestin domain containing 4 [Source:RGD Symbol%3BAcc:1311763]
rn6_v1_chr19_-_26053762_26053762	0.798287	Hoxa4	ENSRNOT00000004646|MAST1|ENSRNOG00000003469|microtubule associated serine/threonine kinase 1 [Source:RGD Symbol%3BAcc:631372]
rn6_v1_chr1_+_154606490_154606490	0.750141	Hoxa4	ENSRNOT00000024095|Ccdc89|ENSRNOG00000022766|coiled-coil domain containing 89 [Source:RGD Symbol%3BAcc:1305335]
rn6_v1_chr7_-_107223047_107223047	0.648247	Hoxa4	ENSRNOT00000007250|Lrrc6|ENSRNOG00000005233|leucine rich repeat containing 6 [Source:RGD Symbol%3BAcc:1559937]	ENSRNOT00000084875|Lrrc6|ENSRNOG00000005233|leucine rich repeat containing 6 [Source:RGD Symbol%3BAcc:1559937]
rn6_v1_chr13_+_98311827_98311827	0.619618	Hoxa4	ENSRNOT00000082844|Cdc42bpa|ENSRNOG00000002841|CDC42 binding protein kinase alpha [Source:RGD Symbol%3BAcc:621406]
rn6_v1_chr5_-_69517277_69517277	0.468833	Hoxa4	ENSRNOT00000079848|Olr850|ENSRNOG00000057655|olfactory receptor 850 [Source:RGD Symbol%3BAcc:1332612]
rn6_v1_chr9_+_37593032_37593032	0.453176	Hoxa4	ENSRNOT00000051890|AABR07067274.1|ENSRNOG00000038721|
rn6_v1_chr9_-_88748866_88748866	0.3471	Hoxa4	ENSRNOT00000071906|Rpl30l1|ENSRNOG00000048437|ribosomal protein L30-like 1 [Source:RGD Symbol%3BAcc:1562397]
rn6_v1_chr8_+_90304148_90304148	0.299208	Hoxa4	ENSRNOT00000001195|AABR07070892.1|ENSRNOG00000000896|
rn6_v1_chr3_-_77605962_77605962	0.273523	Hoxa4	ENSRNOT00000090062|Olr665|ENSRNOG00000051939|olfactory receptor 665 [Source:RGD Symbol%3BAcc:1333773]
rn6_v1_chr2_-_155381839_155381839	0.254206	Hoxa4	ENSRNOT00000057657|Vom2r47|ENSRNOG00000028345|vomeronasal 2 receptor%2C 47 [Source:RGD Symbol%3BAcc:1559813]
rn6_v1_chr1_+_169074475_169074475	0.254175	Hoxa4	ENSRNOT00000050248|Olr132|ENSRNOG00000029051|olfactory receptor 132 [Source:RGD Symbol%3BAcc:1333371]
rn6_v1_chr10_-_29450644_29450644	0.238819	Hoxa4	ENSRNOT00000087937|Adra1b|ENSRNOG00000060087|adrenoceptor alpha 1B [Source:RGD Symbol%3BAcc:2054]
rn6_v1_chr5_-_12199283_12199283	0.120725	Hoxa4	ENSRNOT00000007769|Pcmtd1|ENSRNOG00000005730|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:RGD Symbol%3BAcc:1586096]
rn6_v1_chr4_-_82160240_82160240	0.0839212	Hoxa4	ENSRNOT00000038775|Hoxa4|ENSRNOG00000027365|homeo box A4 [Source:RGD Symbol%3BAcc:2814]	ENSRNOT00000058985|Hoxa4|ENSRNOG00000027365|homeo box A4 [Source:RGD Symbol%3BAcc:2814]
rn6_v1_chr10_+_62566732_62566732	0.0546101	Hoxa4	ENSRNOT00000021368|Taok1|ENSRNOG00000015692|TAO kinase 1 [Source:RGD Symbol%3BAcc:708455]
rn6_v1_chr2_+_46140482_46140482	0.0472853	Hoxa4	ENSRNOT00000072858|Olr1262|ENSRNOG00000045981|olfactory receptor 1262 [Source:RGD Symbol%3BAcc:1333637]
rn6_v1_chr2_-_118882562_118882562	0.0293229	Hoxa4	ENSRNOT00000058860|Kcnmb3|ENSRNOG00000027836|potassium calcium-activated channel subfamily M regulatory beta subunit 3 [Source:RGD Symbol%3BAcc:1311852]
