rn6_v1_chr6_+_64789940_64790112	63.7878	Hoxa7_Hoxc8	ENSRNOT00000085979|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000059739|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000051908|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000082793|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000078583|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000091677|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000093241|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]
rn6_v1_chr3_-_15278645_15278645	27.4319	Hoxa7_Hoxc8	ENSRNOT00000032204|Ttll11|ENSRNOG00000019339|tubulin tyrosine ligase like11 [Source:RGD Symbol%3BAcc:1588742]
rn6_v1_chr9_+_73378057_73378111	26.0867	Hoxa7_Hoxc8	ENSRNOT00000043627|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000045766|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000092445|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]	ENSRNOT00000037974|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]
rn6_v1_chr2_-_57935334_57935363	21.7452	Hoxa7_Hoxc8	ENSRNOT00000022319|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000085599|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000077790|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]	ENSRNOT00000035821|Slc1a3|ENSRNOG00000016163|solute carrier family 1 member 3 [Source:RGD Symbol%3BAcc:3698]
rn6_v1_chr9_+_73418607_73418607	19.1649	Hoxa7_Hoxc8	ENSRNOT00000092547|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]
rn6_v1_chr1_-_236900904_236900904	18.5618	Hoxa7_Hoxc8	ENSRNOT00000066846|AABR07006480.1|ENSRNOG00000042788|
rn6_v1_chr14_+_39964588_39964588	17.91	Hoxa7_Hoxc8	ENSRNOT00000003240|Gabrg1|ENSRNOG00000002360|gamma-aminobutyric acid type A receptor gamma 1 subunit [Source:RGD Symbol%3BAcc:621732]
rn6_v1_chrX_+_84064427_84064427	17.7731	Hoxa7_Hoxc8	ENSRNOT00000046364|Zfp711|ENSRNOG00000022391|zinc finger protein 711 [Source:RGD Symbol%3BAcc:1562768]
rn6_v1_chr2_+_145174876_145174876	16.9748	Hoxa7_Hoxc8	ENSRNOT00000040631|Mab21l1|ENSRNOG00000032941|mab-21 like 1 [Source:RGD Symbol%3BAcc:1589984]
rn6_v1_chr1_-_236729412_236729412	16.3122	Hoxa7_Hoxc8	ENSRNOT00000054794|Prune2|ENSRNOG00000015088|prune homolog 2 [Source:RGD Symbol%3BAcc:1311350]
rn6_v1_chr8_+_33239139_33239139	15.7321	Hoxa7_Hoxc8	ENSRNOT00000011589|Arhgap32|ENSRNOG00000008709|Rho GTPase activating protein 32 [Source:RGD Symbol%3BAcc:1305267]
rn6_v1_chr15_+_62406873_62406873	15.5476	Hoxa7_Hoxc8	ENSRNOT00000047572|Olfm4|ENSRNOG00000013280|olfactomedin 4 [Source:RGD Symbol%3BAcc:1311708]
rn6_v1_chr9_+_67234303_67234303	13.7567	Hoxa7_Hoxc8	ENSRNOT00000050179|Abi2|ENSRNOG00000017707|abl-interactor 2 [Source:RGD Symbol%3BAcc:628771]
rn6_v1_chr4_+_94696965_94696965	12.5758	Hoxa7_Hoxc8	ENSRNOT00000064696|Grid2|ENSRNOG00000006174|glutamate ionotropic receptor delta type subunit 2 [Source:RGD Symbol%3BAcc:68368]
rn6_v1_chr2_-_33025271_33025271	12.131	Hoxa7_Hoxc8	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr1_+_170205591_170205591	11.9374	Hoxa7_Hoxc8	ENSRNOT00000071063|LOC686660|ENSRNOG00000049480|similar to olfactory receptor 692 [Source:RGD Symbol%3BAcc:1594988]
rn6_v1_chrX_+_14019961_14019961	10.0501	Hoxa7_Hoxc8	ENSRNOT00000004785|Sytl5|ENSRNOG00000003585|synaptotagmin-like 5 [Source:RGD Symbol%3BAcc:631342]
rn6_v1_chr3_+_48096954_48096954	9.27085	Hoxa7_Hoxc8	ENSRNOT00000068238|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000064344|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000044638|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr18_+_30036887_30036887	8.61377	Hoxa7_Hoxc8	ENSRNOT00000077824|Pcdha4|ENSRNOG00000020119|protocadherin alpha 4 [Source:RGD Symbol%3BAcc:620337]
rn6_v1_chr2_-_35870578_35870578	8.4808	Hoxa7_Hoxc8	ENSRNOT00000066069|Rnf180|ENSRNOG00000043329|ring finger protein 180 [Source:RGD Symbol%3BAcc:1595064]
rn6_v1_chrX_+_131381134_131381134	7.91793	Hoxa7_Hoxc8	ENSRNOT00000007474|AABR07041481.1|ENSRNOG00000005665|
rn6_v1_chr12_-_52658275_52658275	7.87985	Hoxa7_Hoxc8	ENSRNOT00000041981|Zfp605|ENSRNOG00000037428|zinc finger protein 605 [Source:RGD Symbol%3BAcc:2318406]
rn6_v1_chr4_-_150485781_150485781	7.70346	Hoxa7_Hoxc8	ENSRNOT00000008763|Zfp248|ENSRNOG00000037251|zinc finger protein 248 [Source:RGD Symbol%3BAcc:1561270]
rn6_v1_chr10_-_74679858_74679858	7.54585	Hoxa7_Hoxc8	ENSRNOT00000003859|Ppm1e|ENSRNOG00000024730|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1E [Source:RGD Symbol%3BAcc:735028]
rn6_v1_chr8_-_128754514_128754514	7.31179	Hoxa7_Hoxc8	ENSRNOT00000025019|Cx3cr1|ENSRNOG00000018509|C-X3-C motif chemokine receptor 1 [Source:RGD Symbol%3BAcc:620137]
rn6_v1_chr8_-_17696989_17696989	6.79561	Hoxa7_Hoxc8	ENSRNOT00000083752|AABR07069336.1|ENSRNOG00000054772|
rn6_v1_chr18_+_14757679_14757679	6.53195	Hoxa7_Hoxc8	ENSRNOT00000071364|Mapre2|ENSRNOG00000047261|microtubule-associated protein%2C RP/EB family%2C member 2 [Source:RGD Symbol%3BAcc:1590736]
rn6_v1_chr3_-_52849907_52849907	6.5082	Hoxa7_Hoxc8	ENSRNOT00000041096|Scn7a|ENSRNOG00000029342|sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol%3BAcc:61922]
rn6_v1_chr2_+_72006099_72006099	6.46859	Hoxa7_Hoxc8	ENSRNOT00000034044|Cdh12|ENSRNOG00000026392|cadherin 12 [Source:RGD Symbol%3BAcc:1566350]
rn6_v1_chr18_+_30592794_30592794	6.29337	Hoxa7_Hoxc8	ENSRNOT00000027133|Pcdhb22|ENSRNOG00000020028|protocadherin beta 22 [Source:RGD Symbol%3BAcc:1310328]
rn6_v1_chr8_+_82038967_82038967	6.28312	Hoxa7_Hoxc8	ENSRNOT00000079535|Myo5a|ENSRNOG00000058866|myosin VA [Source:RGD Symbol%3BAcc:3143]
rn6_v1_chr10_+_84135116_84135116	6.24103	Hoxa7_Hoxc8	ENSRNOT00000031035|Hoxb7|ENSRNOG00000007611|homeo box B7 [Source:RGD Symbol%3BAcc:1559918]
rn6_v1_chr9_+_84203072_84203072	6.19045	Hoxa7_Hoxc8	ENSRNOT00000018882|Sgpp2|ENSRNOG00000037695|sphingosine-1-phosphate phosphatase 2 [Source:RGD Symbol%3BAcc:1565739]
rn6_v1_chr5_-_133959447_133959447	6.06581	Hoxa7_Hoxc8	ENSRNOT00000011985|Cyp4x1|ENSRNOG00000043513|cytochrome P450%2C family 4%2C subfamily x%2C polypeptide 1 [Source:RGD Symbol%3BAcc:628719]
rn6_v1_chr4_+_148208260_148208260	5.95179	Hoxa7_Hoxc8	ENSRNOT00000015742|Zfand4|ENSRNOG00000011791|zinc finger AN1-type containing 4 [Source:RGD Symbol%3BAcc:628707]
rn6_v1_chr9_+_71915421_71915421	5.80395	Hoxa7_Hoxc8	ENSRNOT00000020447|Pikfyve|ENSRNOG00000015158|phosphoinositide kinase%2C FYVE-type zinc finger containing [Source:RGD Symbol%3BAcc:1592067]
rn6_v1_chr5_+_58661049_58661049	5.73278	Hoxa7_Hoxc8	ENSRNOT00000078274|Unc13b|ENSRNOG00000008237|unc-13 homolog B [Source:RGD Symbol%3BAcc:619723]
rn6_v1_chr2_-_98610368_98610368	5.68515	Hoxa7_Hoxc8	ENSRNOT00000011641|Zfhx4|ENSRNOG00000008765|zinc finger homeobox 4 [Source:RGD Symbol%3BAcc:1563022]
rn6_v1_chr4_-_18396035_18396035	5.67101	Hoxa7_Hoxc8	ENSRNOT00000034692|Sema3a|ENSRNOG00000023337|semaphorin 3A [Source:RGD Symbol%3BAcc:3657]
rn6_v1_chrX_-_69218526_69218556	5.60377	Hoxa7_Hoxc8	ENSRNOT00000092321|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]	ENSRNOT00000074071|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]	ENSRNOT00000092571|Pja1|ENSRNOG00000047339|praja ring finger ubiquitin ligase 1 [Source:RGD Symbol%3BAcc:1591532]
rn6_v1_chr3_-_64095120_64095120	5.54464	Hoxa7_Hoxc8	ENSRNOT00000016837|Sestd1|ENSRNOG00000012603|SEC14 and spectrin domain containing 1 [Source:RGD Symbol%3BAcc:1562244]
rn6_v1_chr6_+_44225233_44225233	5.48679	Hoxa7_Hoxc8	ENSRNOT00000066593|Kidins220|ENSRNOG00000023176|kinase D-interacting substrate 220 [Source:RGD Symbol%3BAcc:619949]
rn6_v1_chr20_+_27366213_27366213	5.42765	Hoxa7_Hoxc8	ENSRNOT00000000302|Tet1|ENSRNOG00000000277|tet methylcytosine dioxygenase 1 [Source:RGD Symbol%3BAcc:1310993]	ENSRNOT00000057939|Tet1|ENSRNOG00000000277|tet methylcytosine dioxygenase 1 [Source:RGD Symbol%3BAcc:1310993]
rn6_v1_chr3_-_52447622_52447622	5.3134	Hoxa7_Hoxc8	ENSRNOT00000083552|Scn1a|ENSRNOG00000053122|sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol%3BAcc:69364]
rn6_v1_chr5_+_58995249_58995249	5.07318	Hoxa7_Hoxc8	ENSRNOT00000023411|Ccdc107|ENSRNOG00000017253|coiled-coil domain containing 107 [Source:RGD Symbol%3BAcc:1560252]
rn6_v1_chr1_+_99505677_99505677	5.02054	Hoxa7_Hoxc8	ENSRNOT00000024645|Zfp719|ENSRNOG00000033729|zinc finger protein 719 [Source:RGD Symbol%3BAcc:2319483]
rn6_v1_chrX_+_9956370_9956370	4.73817	Hoxa7_Hoxc8	ENSRNOT00000082316|LOC100910506|ENSRNOG00000060946|peripheral plasma membrane protein CASK-like [Source:RGD Symbol%3BAcc:6498449]
rn6_v1_chr5_+_22392732_22392732	4.69224	Hoxa7_Hoxc8	ENSRNOT00000087182|Clvs1|ENSRNOG00000006919|clavesin 1 [Source:RGD Symbol%3BAcc:1564200]
rn6_v1_chr20_+_3830164_3830199	4.66442	Hoxa7_Hoxc8	ENSRNOT00000045533|Col11a2|ENSRNOG00000000463|collagen type XI alpha 2 chain [Source:RGD Symbol%3BAcc:2373]	ENSRNOT00000084117|Col11a2|ENSRNOG00000000463|collagen type XI alpha 2 chain [Source:RGD Symbol%3BAcc:2373]
rn6_v1_chr16_+_48513432_48513432	4.63938	Hoxa7_Hoxc8	ENSRNOT00000044934|LOC685135|ENSRNOG00000030778|similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9) [Source:RGD Symbol%3BAcc:1597747]
rn6_v1_chrX_-_32095867_32096016	4.62149	Hoxa7_Hoxc8	ENSRNOT00000049947|Ace2|ENSRNOG00000031665|angiotensin I converting enzyme 2 [Source:RGD Symbol%3BAcc:728890]	ENSRNOT00000080730|Ace2|ENSRNOG00000031665|angiotensin I converting enzyme 2 [Source:RGD Symbol%3BAcc:728890]
rn6_v1_chr8_+_122076759_122076759	4.505	Hoxa7_Hoxc8	ENSRNOT00000012545|Clasp2|ENSRNOG00000009161|cytoplasmic linker associated protein 2 [Source:RGD Symbol%3BAcc:619789]
rn6_v1_chr9_-_30251388_30251388	4.50408	Hoxa7_Hoxc8	ENSRNOT00000035033|Sdhaf4|ENSRNOG00000028087|succinate dehydrogenase complex assembly factor 4 [Source:RGD Symbol%3BAcc:1588998]
rn6_v1_chr8_-_39460844_39460844	4.5001	Hoxa7_Hoxc8	ENSRNOT00000048875|Pknox2|ENSRNOG00000028856|PBX/knotted 1 homeobox 2 [Source:RGD Symbol%3BAcc:1590611]
rn6_v1_chr1_+_87224677_87224677	4.48292	Hoxa7_Hoxc8	ENSRNOT00000028070|Ppp1r14a|ENSRNOG00000020676|protein phosphatase 1%2C regulatory (inhibitor) subunit 14A [Source:RGD Symbol%3BAcc:620536]
rn6_v1_chr1_+_69841998_69841998	4.35832	Hoxa7_Hoxc8	ENSRNOT00000072231|Zfp773-ps1|ENSRNOG00000047061|zinc finger protein 773%2C pseudogene 1 [Source:RGD Symbol%3BAcc:1563793]
rn6_v1_chr11_+_53081025_53081025	4.35214	Hoxa7_Hoxc8	ENSRNOT00000002700|Bbx|ENSRNOG00000001971|BBX%2C HMG-box containing [Source:RGD Symbol%3BAcc:1309769]
rn6_v1_chr1_-_23556241_23556241	4.28856	Hoxa7_Hoxc8	ENSRNOT00000072943|LOC100910446|ENSRNOG00000048248|syntaxin-7-like [Source:RGD Symbol%3BAcc:6498726]
rn6_v1_chr2_-_185852759_185852759	4.26368	Hoxa7_Hoxc8	ENSRNOT00000049461|Mab21l2|ENSRNOG00000031398|mab-21 like 2 [Source:RGD Symbol%3BAcc:1595520]
rn6_v1_chr2_-_139528162_139528162	4.17119	Hoxa7_Hoxc8	ENSRNOT00000014317|Slc7a11|ENSRNOG00000010210|solute carrier family 7 member 11 [Source:RGD Symbol%3BAcc:1309275]
rn6_v1_chr7_-_107203897_107203897	3.98661	Hoxa7_Hoxc8	ENSRNOT00000086263|Lrrc6|ENSRNOG00000005233|leucine rich repeat containing 6 [Source:RGD Symbol%3BAcc:1559937]
rn6_v1_chr3_-_21904133_21904270	3.96251	Hoxa7_Hoxc8	ENSRNOT00000090576|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000087611|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]	ENSRNOT00000066377|Strbp|ENSRNOG00000010150|spermatid perinuclear RNA binding protein [Source:RGD Symbol%3BAcc:620673]
rn6_v1_chr3_-_160561741_160561741	3.68099	Hoxa7_Hoxc8	ENSRNOT00000018364|Kcns1|ENSRNOG00000013681|potassium voltage-gated channel%2C modifier subfamily S%2C member 1 [Source:RGD Symbol%3BAcc:621524]
rn6_v1_chr7_+_23854846_23854846	3.58443	Hoxa7_Hoxc8	ENSRNOT00000037290|Bpifc|ENSRNOG00000022937|BPI fold containing family C [Source:RGD Symbol%3BAcc:1311686]
rn6_v1_chr18_+_30880020_30880020	3.27158	Hoxa7_Hoxc8	ENSRNOT00000060468|Pcdhgb5|ENSRNOG00000039457|protocadherin gamma subfamily B%2C 5 [Source:RGD Symbol%3BAcc:1591752]
rn6_v1_chr2_+_196462554_196462554	3.22121	Hoxa7_Hoxc8	ENSRNOT00000056380|Fam63a|ENSRNOG00000021131|family with sequence similarity 63%2C member A [Source:RGD Symbol%3BAcc:1559660]
rn6_v1_chr17_+_34704616_34704664	3.21232	Hoxa7_Hoxc8	ENSRNOT00000090706|Exoc2|ENSRNOG00000060266|exocyst complex component 2 [Source:RGD Symbol%3BAcc:619961]	ENSRNOT00000083674|Exoc2|ENSRNOG00000060266|exocyst complex component 2 [Source:RGD Symbol%3BAcc:619961]	ENSRNOT00000077110|Exoc2|ENSRNOG00000060266|exocyst complex component 2 [Source:RGD Symbol%3BAcc:619961]
rn6_v1_chr8_-_33121002_33121002	3.123	Hoxa7_Hoxc8	ENSRNOT00000047211|LOC100362981|ENSRNOG00000034226|LRRGT00010-like [Source:RGD Symbol%3BAcc:2324608]
rn6_v1_chr6_+_106052212_106052212	3.10277	Hoxa7_Hoxc8	ENSRNOT00000010626|Sipa1l1|ENSRNOG00000007646|signal-induced proliferation-associated 1 like 1 [Source:RGD Symbol%3BAcc:708497]
rn6_v1_chr8_+_71591360_71591360	3.03731	Hoxa7_Hoxc8	ENSRNOT00000090096|Csnk1g1|ENSRNOG00000016620|casein kinase 1%2C gamma 1 [Source:RGD Symbol%3BAcc:621404]
rn6_v1_chr8_-_7426611_7426611	3.02178	Hoxa7_Hoxc8	ENSRNOT00000031492|Arhgap42|ENSRNOG00000026821|Rho GTPase activating protein 42 [Source:RGD Symbol%3BAcc:1564081]
rn6_v1_chr10_-_71441389_71441389	2.96989	Hoxa7_Hoxc8	ENSRNOT00000003699|Tada2a|ENSRNOG00000002757|transcriptional adaptor 2A [Source:RGD Symbol%3BAcc:1309959]
rn6_v1_chr10_+_90230711_90230711	2.90073	Hoxa7_Hoxc8	ENSRNOT00000055185|Tmub2|ENSRNOG00000020916|transmembrane and ubiquitin-like domain containing 2 [Source:RGD Symbol%3BAcc:1304758]
rn6_v1_chr1_-_43638161_43638161	2.87803	Hoxa7_Hoxc8	ENSRNOT00000024460|Ipcef1|ENSRNOG00000018163|interaction protein for cytohesin exchange factors 1 [Source:RGD Symbol%3BAcc:735159]
rn6_v1_chr8_-_87419564_87419564	2.84452	Hoxa7_Hoxc8	ENSRNOT00000015365|Filip1|ENSRNOG00000011521|filamin A interacting protein 1 [Source:RGD Symbol%3BAcc:628597]
rn6_v1_chr4_+_157524423_157524423	2.74971	Hoxa7_Hoxc8	ENSRNOT00000036654|Zfp384|ENSRNOG00000017066|zinc finger protein 384 [Source:RGD Symbol%3BAcc:708346]
rn6_v1_chr4_+_29535852_29535852	2.69279	Hoxa7_Hoxc8	ENSRNOT00000087619|NEWGENE_621351|ENSRNOG00000052925|collagen%2C type I%2C alpha 2 [Source:RGD Symbol%3BAcc:9452897]
rn6_v1_chr17_-_2705123_2705123	2.59665	Hoxa7_Hoxc8	ENSRNOT00000024940|Olr1652|ENSRNOG00000018492|olfactory receptor 1652 [Source:RGD Symbol%3BAcc:1333425]
rn6_v1_chr12_+_25430464_25430464	2.58203	Hoxa7_Hoxc8	ENSRNOT00000002020|Gtf2i|ENSRNOG00000001479|general transcription factor II I [Source:RGD Symbol%3BAcc:727961]
rn6_v1_chr8_-_69508024_69508024	2.57897	Hoxa7_Hoxc8	ENSRNOT00000083564|AABR07070416.3|ENSRNOG00000059963|
rn6_v1_chr11_-_61287914_61287914	2.40096	Hoxa7_Hoxc8	ENSRNOT00000086286|Spice1|ENSRNOG00000039024|spindle and centriole associated protein 1 [Source:RGD Symbol%3BAcc:1310729]
rn6_v1_chr2_+_226563050_226563050	2.38311	Hoxa7_Hoxc8	ENSRNOT00000065111|Bcar3|ENSRNOG00000013737|breast cancer anti-estrogen resistance 3 [Source:RGD Symbol%3BAcc:1311688]
rn6_v1_chrM_+_9870_9870	2.28831	Hoxa7_Hoxc8	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr1_-_212633304_212633304	2.24899	Hoxa7_Hoxc8	ENSRNOT00000025611|Olr286|ENSRNOG00000018955|olfactory receptor 286 [Source:RGD Symbol%3BAcc:1333221]
rn6_v1_chrX_+_144994139_144994139	2.24677	Hoxa7_Hoxc8	ENSRNOT00000071783|LOC102546596|ENSRNOG00000049579|pre-mRNA-splicing factor CWC22 homolog [Source:RGD Symbol%3BAcc:7730159]
rn6_v1_chr4_-_131694755_131694755	2.22982	Hoxa7_Hoxc8	ENSRNOT00000013271|Foxp1|ENSRNOG00000009184|forkhead box P1 [Source:RGD Symbol%3BAcc:1308669]
rn6_v1_chr3_+_77047466_77047466	2.19005	Hoxa7_Hoxc8	ENSRNOT00000089424|Olr648|ENSRNOG00000059965|olfactory receptor 648 [Source:RGD Symbol%3BAcc:1333456]
rn6_v1_chr11_+_70056624_70056624	2.14354	Hoxa7_Hoxc8	ENSRNOT00000002447|AC133403.1|ENSRNOG00000046836|
rn6_v1_chr5_+_6373583_6373583	2.0798	Hoxa7_Hoxc8	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chr18_+_30820321_30820321	2.07017	Hoxa7_Hoxc8	ENSRNOT00000060472|Pcdhga3|ENSRNOG00000039461|protocadherin gamma subfamily A%2C 3 [Source:RGD Symbol%3BAcc:1598664]
rn6_v1_chr17_-_14627937_14627937	2.06993	Hoxa7_Hoxc8	ENSRNOT00000020532|NEWGENE_1308171|ENSRNOG00000029792|osteoglycin [Source:RGD Symbol%3BAcc:11378586]
rn6_v1_chr1_+_217345545_217345545	1.95233	Hoxa7_Hoxc8	ENSRNOT00000071741|Shank2|ENSRNOG00000050206|SH3 and multiple ankyrin repeat domains 2 [Source:RGD Symbol%3BAcc:628772]
rn6_v1_chr1_+_141767940_141767940	1.92673	Hoxa7_Hoxc8	ENSRNOT00000064034|Zfp710|ENSRNOG00000014278|zinc finger protein 710 [Source:RGD Symbol%3BAcc:1306491]
rn6_v1_chr2_-_170301348_170301348	1.92237	Hoxa7_Hoxc8	ENSRNOT00000088131|Si|ENSRNOG00000031067|sucrase-isomaltase [Source:RGD Symbol%3BAcc:3675]
rn6_v1_chr3_+_172550258_172550258	1.88847	Hoxa7_Hoxc8	ENSRNOT00000075148|Tubb1|ENSRNOG00000046151|tubulin%2C beta 1 class VI [Source:RGD Symbol%3BAcc:1589557]
rn6_v1_chr1_-_241046249_241046256	1.84771	Hoxa7_Hoxc8	ENSRNOT00000067796|Smc5|ENSRNOG00000030572|structural maintenance of chromosomes 5 [Source:RGD Symbol%3BAcc:1307492]	ENSRNOT00000081866|Smc5|ENSRNOG00000030572|structural maintenance of chromosomes 5 [Source:RGD Symbol%3BAcc:1307492]
rn6_v1_chr17_+_11683862_11683862	1.81964	Hoxa7_Hoxc8	ENSRNOT00000024766|Msx2|ENSRNOG00000018355|msh homeobox 2 [Source:RGD Symbol%3BAcc:3116]
rn6_v1_chr3_-_45169118_45169118	1.78651	Hoxa7_Hoxc8	ENSRNOT00000086371|Ccdc148|ENSRNOG00000057740|coiled-coil domain containing 148 [Source:RGD Symbol%3BAcc:1561169]
rn6_v1_chrX_-_16532089_16532089	1.75204	Hoxa7_Hoxc8	ENSRNOT00000093156|Dgkk|ENSRNOG00000039323|diacylglycerol kinase kappa [Source:RGD Symbol%3BAcc:1561510]
rn6_v1_chr3_+_148654668_148654668	1.71649	Hoxa7_Hoxc8	ENSRNOT00000081370|Tm9sf4|ENSRNOG00000009406|transmembrane 9 superfamily member 4 [Source:RGD Symbol%3BAcc:1307768]
rn6_v1_chr18_+_59748444_59748444	1.69645	Hoxa7_Hoxc8	ENSRNOT00000024752|St8sia3|ENSRNOG00000018305|ST8 alpha-N-acetyl-neuraminide alpha-2%2C8-sialyltransferase 3 [Source:RGD Symbol%3BAcc:3680]
rn6_v1_chr2_+_112914375_112914375	1.66586	Hoxa7_Hoxc8	ENSRNOT00000092737|Nceh1|ENSRNOG00000013313|neutral cholesterol ester hydrolase 1 [Source:RGD Symbol%3BAcc:1311104]
rn6_v1_chr11_+_46737892_46737892	1.54396	Hoxa7_Hoxc8	ENSRNOT00000052182|AABR07033979.1|ENSRNOG00000042474|
rn6_v1_chr10_+_76320041_76320041	1.48927	Hoxa7_Hoxc8	ENSRNOT00000037693|Coil|ENSRNOG00000000244|coilin [Source:RGD Symbol%3BAcc:62031]
rn6_v1_chr1_+_227892956_227892956	1.48913	Hoxa7_Hoxc8	ENSRNOT00000028483|AABR07006278.1|ENSRNOG00000020980|
rn6_v1_chr20_+_42966140_42966140	1.48534	Hoxa7_Hoxc8	ENSRNOT00000000707|Marcks|ENSRNOG00000000579|myristoylated alanine rich protein kinase C substrate [Source:RGD Symbol%3BAcc:3028]
rn6_v1_chr3_-_141411170_141411170	1.42687	Hoxa7_Hoxc8	ENSRNOT00000017364|Nkx2-2|ENSRNOG00000012728|NK2 homeobox 2 [Source:RGD Symbol%3BAcc:1308443]
rn6_v1_chr20_+_1172867_1172867	1.33852	Hoxa7_Hoxc8	ENSRNOT00000041189|Olr1708|ENSRNOG00000045530|olfactory receptor 1708 [Source:RGD Symbol%3BAcc:1332733]
rn6_v1_chr1_+_201337416_201337416	1.30281	Hoxa7_Hoxc8	ENSRNOT00000067742|Btbd16|ENSRNOG00000036675|BTB domain containing 16 [Source:RGD Symbol%3BAcc:1311454]
rn6_v1_chr8_+_5833359_5833359	1.26724	Hoxa7_Hoxc8	ENSRNOT00000033306|Mmp20|ENSRNOG00000021896|matrix metallopeptidase 20 [Source:RGD Symbol%3BAcc:1308730]
rn6_v1_chr3_+_31802999_31802999	1.2636	Hoxa7_Hoxc8	ENSRNOT00000041305|AABR07051996.1|ENSRNOG00000033278|
rn6_v1_chrX_-_70835089_70835089	1.24805	Hoxa7_Hoxc8	ENSRNOT00000076351|Tex11|ENSRNOG00000025672|testis expressed 11 [Source:RGD Symbol%3BAcc:1560239]
rn6_v1_chr3_-_90751055_90751055	1.20786	Hoxa7_Hoxc8	ENSRNOT00000040741|LOC499843|ENSRNOG00000032177|LRRGT00091 [Source:RGD Symbol%3BAcc:1560877]
rn6_v1_chr1_+_86429262_86429262	1.16159	Hoxa7_Hoxc8	ENSRNOT00000045789|Vom1r3|ENSRNOG00000048251|vomeronasal 1 receptor 3 [Source:RGD Symbol%3BAcc:1359495]
rn6_v1_chr16_+_24978527_24978527	1.14143	Hoxa7_Hoxc8	ENSRNOT00000019363|Tma16|ENSRNOG00000014188|translation machinery associated 16 homolog [Source:RGD Symbol%3BAcc:1305222]
rn6_v1_chr18_-_74059533_74059533	1.04814	Hoxa7_Hoxc8	ENSRNOT00000038767|RGD1308601|ENSRNOG00000017215|similar to hypothetical protein [Source:RGD Symbol%3BAcc:1308601]
rn6_v1_chr9_+_71247781_71247781	1.03239	Hoxa7_Hoxc8	ENSRNOT00000049654|Creb1|ENSRNOG00000013412|cAMP responsive element binding protein 1 [Source:RGD Symbol%3BAcc:620218]
rn6_v1_chr10_+_61685645_61685645	0.878717	Hoxa7_Hoxc8	ENSRNOT00000003933|Mnt|ENSRNOG00000002894|MAX network transcriptional repressor [Source:RGD Symbol%3BAcc:1308683]
rn6_v1_chr6_+_2216623_2216623	0.868607	Hoxa7_Hoxc8	ENSRNOT00000008045|Rmdn2|ENSRNOG00000006082|regulator of microtubule dynamics 2 [Source:RGD Symbol%3BAcc:1559836]
rn6_v1_chr1_+_255579474_255579474	0.794986	Hoxa7_Hoxc8	ENSRNOT00000024465|Btaf1|ENSRNOG00000017938|B-TFIID TATA-box binding protein associated factor 1 [Source:RGD Symbol%3BAcc:1564130]
rn6_v1_chr8_-_20173107_20173107	0.717555	Hoxa7_Hoxc8	ENSRNOT00000045215|Olr1163|ENSRNOG00000030569|olfactory receptor 1163 [Source:RGD Symbol%3BAcc:1334266]
rn6_v1_chr4_+_2593876_2593876	0.704346	Hoxa7_Hoxc8	ENSRNOT00000092992|Ube3c|ENSRNOG00000010702|ubiquitin protein ligase E3C [Source:RGD Symbol%3BAcc:1559986]
rn6_v1_chr10_+_91126689_91126689	0.546641	Hoxa7_Hoxc8	ENSRNOT00000004046|Nmt1|ENSRNOG00000002989|N-myristoyltransferase 1 [Source:RGD Symbol%3BAcc:628642]
rn6_v1_chr7_+_9262982_9262982	0.54439	Hoxa7_Hoxc8	ENSRNOT00000047647|Olr1063|ENSRNOG00000046346|olfactory receptor 1063 [Source:RGD Symbol%3BAcc:1332732]
rn6_v1_chr3_-_72081079_72081079	0.503856	Hoxa7_Hoxc8	ENSRNOT00000007914|Tmx2|ENSRNOG00000005308|thioredoxin-related transmembrane protein 2 [Source:RGD Symbol%3BAcc:1359456]
rn6_v1_chrX_-_106607352_106607352	0.46592	Hoxa7_Hoxc8	ENSRNOT00000082858|AABR07040624.1|ENSRNOG00000058183|
rn6_v1_chr4_+_6827429_6827429	0.455604	Hoxa7_Hoxc8	ENSRNOT00000071737|Rheb|ENSRNOG00000050578|Ras homolog enriched in brain [Source:RGD Symbol%3BAcc:621840]
rn6_v1_chr15_-_55209342_55209342	0.439386	Hoxa7_Hoxc8	ENSRNOT00000021752|Rb1|ENSRNOG00000016029|RB transcriptional corepressor 1 [Source:RGD Symbol%3BAcc:3540]
rn6_v1_chr11_+_43309759_43309759	0.353227	Hoxa7_Hoxc8	ENSRNOT00000040089|Olr1539|ENSRNOG00000047514|olfactory receptor 1539 [Source:RGD Symbol%3BAcc:1333853]
rn6_v1_chr18_-_26656879_26656879	0.352834	Hoxa7_Hoxc8	ENSRNOT00000086729|Epb41l4a|ENSRNOG00000026050|erythrocyte membrane protein band 4.1 like 4A [Source:RGD Symbol%3BAcc:1306034]
rn6_v1_chr12_-_19167015_19167015	0.340826	Hoxa7_Hoxc8	ENSRNOT00000001797|Gjc3|ENSRNOG00000001329|gap junction protein%2C gamma 3 [Source:RGD Symbol%3BAcc:727930]
rn6_v1_chr10_+_95770154_95770154	0.310485	Hoxa7_Hoxc8	ENSRNOT00000030300|Helz|ENSRNOG00000003213|helicase with zinc finger [Source:RGD Symbol%3BAcc:1307049]
rn6_v1_chr7_-_3707226_3707226	0.283831	Hoxa7_Hoxc8	ENSRNOT00000064380|Olr879|ENSRNOG00000043438|olfactory receptor 879 [Source:RGD Symbol%3BAcc:1334413]
rn6_v1_chr16_-_74496731_74496731	0.25114	Hoxa7_Hoxc8	ENSRNOT00000015790|Mrps31|ENSRNOG00000011839|mitochondrial ribosomal protein S31 [Source:RGD Symbol%3BAcc:1307668]
rn6_v1_chr7_+_58570579_58570579	0.209387	Hoxa7_Hoxc8	ENSRNOT00000081227|A930009A15Rik|ENSRNOG00000057981|RIKEN cDNA A930009A15 gene [Source:MGI Symbol%3BAcc:MGI:1925048]
rn6_v1_chr10_-_62184874_62184874	0.174707	Hoxa7_Hoxc8	ENSRNOT00000004229|Rpa1|ENSRNOG00000003123|replication protein A1 [Source:RGD Symbol%3BAcc:1307376]
rn6_v1_chr7_-_4183525_4183525	0.138205	Hoxa7_Hoxc8	ENSRNOT00000047673|Olr889|ENSRNOG00000033344|olfactory receptor 889 [Source:RGD Symbol%3BAcc:1334433]
rn6_v1_chr8_+_5790034_5790034	0.123732	Hoxa7_Hoxc8	ENSRNOT00000061887|Mmp27|ENSRNOG00000040208|matrix metallopeptidase 27 [Source:RGD Symbol%3BAcc:1306642]
rn6_v1_chr1_-_165606375_165606375	0.0611011	Hoxa7_Hoxc8	ENSRNOT00000024290|Mrpl48|ENSRNOG00000018042|mitochondrial ribosomal protein L48 [Source:RGD Symbol%3BAcc:1307576]
rn6_v1_chr8_+_22648323_22648323	0.052954	Hoxa7_Hoxc8	ENSRNOT00000013165|Smarca4|ENSRNOG00000009271|SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 4 [Source:RGD Symbol%3BAcc:621728]
rn6_v1_chr6_+_123034304_123034304	0.0439062	Hoxa7_Hoxc8	ENSRNOT00000078938|Cpg1|ENSRNOG00000060278|candidate plasticity gene 1 [Source:RGD Symbol%3BAcc:631343]
rn6_v1_chr5_-_28164326_28164326	0.0368261	Hoxa7_Hoxc8	ENSRNOT00000088165|Slc26a7|ENSRNOG00000006096|solute carrier family 26 member 7 [Source:RGD Symbol%3BAcc:1310846]
rn6_v1_chr10_+_88227360_88227360	0.0272733	Hoxa7_Hoxc8	ENSRNOT00000041033|Eif1|ENSRNOG00000033765|eukaryotic translation initiation factor 1 [Source:RGD Symbol%3BAcc:1306308]
