rn6_v1_chr9_+_20048121_20048121	52.4686	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000014791|Mep1a|ENSRNOG00000011022|meprin 1 subunit alpha [Source:RGD Symbol%3BAcc:3080]
rn6_v1_chr4_-_51199570_51199570	43.1124	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010788|Slc13a1|ENSRNOG00000008121|solute carrier family 13 member 1 [Source:RGD Symbol%3BAcc:61919]
rn6_v1_chr16_+_2706428_2706428	33.818	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000077117|Il17rd|ENSRNOG00000021966|interleukin 17 receptor D [Source:RGD Symbol%3BAcc:1565237]
rn6_v1_chr1_-_207811008_207811008	28.4152	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080506|Clrn3|ENSRNOG00000028288|clarin 3 [Source:RGD Symbol%3BAcc:1305043]
rn6_v1_chr14_-_20920286_20920286	23.2572	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000004391|Slc4a4|ENSRNOG00000003134|solute carrier family 4 member 4 [Source:RGD Symbol%3BAcc:68936]
rn6_v1_chr4_+_99063181_99063181	22.7255	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000008840|Fabp1|ENSRNOG00000006675|fatty acid binding protein 1 [Source:RGD Symbol%3BAcc:2590]
rn6_v1_chr4_-_173640684_173640684	22.2993	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010728|Rergl|ENSRNOG00000008130|RERG like [Source:RGD Symbol%3BAcc:1560090]
rn6_v1_chr2_-_100249811_100249811	20.3724	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086760|Hnf4g|ENSRNOG00000008971|hepatocyte nuclear factor 4%2C gamma [Source:RGD Symbol%3BAcc:1310102]
rn6_v1_chr3_+_159902441_159902524	20.3566	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089893|Hnf4a|ENSRNOG00000008895|hepatocyte nuclear factor 4%2C alpha [Source:RGD Symbol%3BAcc:2810]	ENSRNOT00000011978|Hnf4a|ENSRNOG00000008895|hepatocyte nuclear factor 4%2C alpha [Source:RGD Symbol%3BAcc:2810]
rn6_v1_chr10_-_88060561_88060561	20.0805	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019133|Krt19|ENSRNOG00000014233|keratin 19 [Source:RGD Symbol%3BAcc:619936]
rn6_v1_chr20_+_3677474_3677474	19.6167	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047663|Mt1m|ENSRNOG00000028841|metallothionein 1M [Source:RGD Symbol%3BAcc:2324335]
rn6_v1_chr9_-_60330086_60330125	18.5307	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000092162|Dnah7|ENSRNOG00000060984|dynein%2C axonemal%2C heavy chain 7 [Source:RGD Symbol%3BAcc:621798]	ENSRNOT00000093630|Dnah7|ENSRNOG00000060984|dynein%2C axonemal%2C heavy chain 7 [Source:RGD Symbol%3BAcc:621798]
rn6_v1_chr8_+_67753279_67753279	17.7561	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009716|Calml4|ENSRNOG00000038202|calmodulin-like 4 [Source:RGD Symbol%3BAcc:1583918]
rn6_v1_chr1_+_213511874_213511892	16.5137	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078080|Cyp2e1|ENSRNOG00000012458|cytochrome P450%2C family 2%2C subfamily e%2C polypeptide 1 [Source:RGD Symbol%3BAcc:2475]	ENSRNOT00000016883|Cyp2e1|ENSRNOG00000012458|cytochrome P450%2C family 2%2C subfamily e%2C polypeptide 1 [Source:RGD Symbol%3BAcc:2475]
rn6_v1_chr5_-_147784311_147784311	16.4843	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000074172|Fam167b|ENSRNOG00000049425|family with sequence similarity 167%2C member B [Source:RGD Symbol%3BAcc:1584589]
rn6_v1_chr14_+_12218553_12218553	16.3616	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003237|Prkg2|ENSRNOG00000002361|protein kinase%2C cGMP-dependent%2C type II [Source:RGD Symbol%3BAcc:3401]
rn6_v1_chr5_+_117698764_117698764	15.0268	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000011486|Angptl3|ENSRNOG00000008638|angiopoietin-like 3 [Source:RGD Symbol%3BAcc:1564505]
rn6_v1_chr9_-_52238564_52238564	14.51	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005073|Col5a2|ENSRNOG00000003736|collagen type V alpha 2 chain [Source:RGD Symbol%3BAcc:70921]
rn6_v1_chr3_+_151126591_151126591	13.2412	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000025859|Myh7b|ENSRNOG00000018997|myosin heavy chain 7B [Source:RGD Symbol%3BAcc:1307994]
rn6_v1_chr1_+_41192824_41192824	12.9202	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082133|Esr1|ENSRNOG00000019358|estrogen receptor 1 [Source:RGD Symbol%3BAcc:2581]
rn6_v1_chr20_-_14020007_14020007	12.547	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000093521|Ggt1|ENSRNOG00000047697|gamma-glutamyltransferase 1 [Source:RGD Symbol%3BAcc:2683]
rn6_v1_chr8_-_6235967_6235967	12.2703	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000068290|LOC654482|ENSRNOG00000043410|hypothetical protein LOC654482 [Source:RGD Symbol%3BAcc:1591894]
rn6_v1_chr18_-_24823837_24823858	10.9848	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021405|Myo7b|ENSRNOG00000015035|myosin VIIb [Source:RGD Symbol%3BAcc:1561153]	ENSRNOT00000090390|Myo7b|ENSRNOG00000015035|myosin VIIb [Source:RGD Symbol%3BAcc:1561153]
rn6_v1_chr19_-_22194740_22194740	10.9146	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr2_-_154418629_154418676	9.99382	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000076274|Plch1|ENSRNOG00000009955|phospholipase C%2C eta 1 [Source:RGD Symbol%3BAcc:1561991]	ENSRNOT00000076165|Plch1|ENSRNOG00000009955|phospholipase C%2C eta 1 [Source:RGD Symbol%3BAcc:1561991]
rn6_v1_chr2_+_60920257_60920257	9.69541	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000025170|C1qtnf3|ENSRNOG00000018570|C1q and tumor necrosis factor related protein 3 [Source:RGD Symbol%3BAcc:1305010]
rn6_v1_chr13_+_57243877_57243877	9.38384	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083693|Kcnt2|ENSRNOG00000013312|potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol%3BAcc:735074]
rn6_v1_chr2_+_8732932_8732932	9.21289	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072849|Arrdc3|ENSRNOG00000045649|arrestin domain containing 3 [Source:RGD Symbol%3BAcc:1359478]
rn6_v1_chr17_-_18590536_18590536	8.97692	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078992|Cap2|ENSRNOG00000043350|CAP%2C adenylate cyclase-associated protein%2C 2 (yeast) [Source:RGD Symbol%3BAcc:620310]
rn6_v1_chr5_+_167141875_167141875	8.89873	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089314|Slc2a5|ENSRNOG00000017693|solute carrier family 2 member 5 [Source:RGD Symbol%3BAcc:68328]
rn6_v1_chr4_-_82289672_82289672	8.86643	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036394|Hoxa10|ENSRNOG00000057650|homeobox A10 [Source:RGD Symbol%3BAcc:9410935]
rn6_v1_chr2_-_204254699_204254699	8.74799	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021487|Mab21l3|ENSRNOG00000016044|mab-21 like 3 [Source:RGD Symbol%3BAcc:1308694]
rn6_v1_chr13_-_50514151_50514151	8.59577	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003951|Ren|ENSRNOG00000002937|renin [Source:RGD Symbol%3BAcc:3554]
rn6_v1_chr20_+_41266566_41266566	8.43788	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000000653|Frk|ENSRNOG00000000543|fyn-related Src family tyrosine kinase [Source:RGD Symbol%3BAcc:621423]
rn6_v1_chr9_+_81689802_81689802	8.41775	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021432|Vil1|ENSRNOG00000015408|villin 1 [Source:RGD Symbol%3BAcc:1307048]
rn6_v1_chr4_-_178441547_178441547	8.18738	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087434|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]	ENSRNOT00000055542|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]
rn6_v1_chr19_-_37916813_37916813	7.91504	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000026585|Lcat|ENSRNOG00000019573|lecithin cholesterol acyltransferase [Source:RGD Symbol%3BAcc:2993]
rn6_v1_chrX_+_112769645_112769645	7.88095	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000064478|Col4a5|ENSRNOG00000018951|collagen type IV alpha 5 chain [Source:RGD Symbol%3BAcc:1565499]
rn6_v1_chr13_-_111972603_111972603	7.81123	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007870|Hsd11b1|ENSRNOG00000005861|hydroxysteroid 11-beta dehydrogenase 1 [Source:RGD Symbol%3BAcc:2834]
rn6_v1_chr7_+_116090189_116090189	7.78615	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081571|Psca|ENSRNOG00000061376|prostate stem cell antigen [Source:RGD Symbol%3BAcc:1594221]
rn6_v1_chr5_+_162808646_162808646	7.63536	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021155|Dhrs3|ENSRNOG00000015736|dehydrogenase/reductase 3 [Source:RGD Symbol%3BAcc:1305584]
rn6_v1_chr18_-_8360684_8360684	7.41835	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021170|Cdh2|ENSRNOG00000015602|cadherin 2 [Source:RGD Symbol%3BAcc:69280]
rn6_v1_chr8_+_49621568_49621568	7.08644	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021949|Tmprss13|ENSRNOG00000016397|transmembrane protease%2C serine 13 [Source:RGD Symbol%3BAcc:1310872]
rn6_v1_chr4_+_155313671_155313671	6.87978	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000020812|Mfap5|ENSRNOG00000015505|microfibrillar associated protein 5 [Source:RGD Symbol%3BAcc:1307919]
rn6_v1_chr12_-_40590361_40590361	6.83688	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067503|Tmem116|ENSRNOG00000027480|transmembrane protein 116 [Source:RGD Symbol%3BAcc:1596066]
rn6_v1_chr8_+_80965255_80965255	6.75945	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079508|Wdr72|ENSRNOG00000054889|WD repeat domain 72 [Source:RGD Symbol%3BAcc:1563550]
rn6_v1_chr7_+_38742051_38742051	6.75604	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000006070|Dcn|ENSRNOG00000004554|decorin [Source:RGD Symbol%3BAcc:61895]
rn6_v1_chr11_+_46108470_46108470	6.70649	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073467|Adgrg7|ENSRNOG00000048134|adhesion G protein-coupled receptor G7 [Source:RGD Symbol%3BAcc:1307217]
rn6_v1_chr6_-_42002819_42002819	6.50214	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032417|Greb1|ENSRNOG00000024651|growth regulation by estrogen in breast cancer 1 [Source:RGD Symbol%3BAcc:1564091]
rn6_v1_chrX_-_139079336_139079336	6.33945	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047605|Usp26|ENSRNOG00000029106|ubiquitin specific peptidase 26 [Source:RGD Symbol%3BAcc:1563443]
rn6_v1_chr16_+_54291251_54291251	6.24477	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079006|Mtus1|ENSRNOG00000010748|microtubule associated tumor suppressor 1 [Source:RGD Symbol%3BAcc:631381]
rn6_v1_chr10_+_77537340_77537340	6.24458	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000003297|Tmem100|ENSRNOG00000002434|transmembrane protein 100 [Source:RGD Symbol%3BAcc:1560541]
rn6_v1_chrX_+_110789269_110789269	6.01922	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086014|Rnf128|ENSRNOG00000055721|ring finger protein 128%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1566282]
rn6_v1_chr7_+_76092503_76092503	6.0115	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079692|Grhl2|ENSRNOG00000007000|grainyhead-like transcription factor 2 [Source:RGD Symbol%3BAcc:1561191]
rn6_v1_chr19_+_9895121_9895121	6.00409	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000033953|Prss54|ENSRNOG00000023092|protease%2C serine%2C 54 [Source:RGD Symbol%3BAcc:1307877]
rn6_v1_chr3_+_93648343_93648343	5.86583	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000091164|AABR07053136.1|ENSRNOG00000060735|
rn6_v1_chr4_+_167017816_167017816	5.58633	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055734|Tas2r145|ENSRNOG00000037036|taste receptor%2C type 2%2C member 145 [Source:RGD Symbol%3BAcc:2324836]
rn6_v1_chr2_+_200572502_200572502	5.56699	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000074666|Zfp697|ENSRNOG00000048181|zinc finger protein 697 [Source:RGD Symbol%3BAcc:1308711]
rn6_v1_chrM_+_3904_3904	5.51071	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000040993|Mt-nd2|ENSRNOG00000031033|mitochondrially encoded NADH dehydrogenase 2 [Source:RGD Symbol%3BAcc:620556]
rn6_v1_chr1_-_89369960_89369960	5.06053	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000028545|Hamp|ENSRNOG00000021029|hepcidin antimicrobial peptide [Source:RGD Symbol%3BAcc:70971]
rn6_v1_chr2_-_88553086_88553086	4.91194	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000042494|LOC361914|ENSRNOG00000028985|similar to solute carrier family 7 (cationic amino acid transporter%2C y+ system)%2C member 12 [Source:RGD Symbol%3BAcc:1565475]
rn6_v1_chr1_-_238376841_238376841	4.83826	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000076393|Tmc1|ENSRNOG00000051262|transmembrane channel-like 1 [Source:RGD Symbol%3BAcc:1308682]
rn6_v1_chr6_+_73358112_73358112	4.69006	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041373|Arhgap5|ENSRNOG00000004696|Rho GTPase activating protein 5 [Source:RGD Symbol%3BAcc:1308507]
rn6_v1_chr5_+_167142182_167142182	4.68901	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000024054|Slc2a5|ENSRNOG00000017693|solute carrier family 2 member 5 [Source:RGD Symbol%3BAcc:68328]
rn6_v1_chr9_+_52023295_52023295	4.68162	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000004956|Col3a1|ENSRNOG00000003357|collagen type III alpha 1 chain [Source:RGD Symbol%3BAcc:71029]
rn6_v1_chr8_-_63750531_63750531	4.66988	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009496|Neo1|ENSRNOG00000006490|neogenin 1 [Source:RGD Symbol%3BAcc:619837]
rn6_v1_chr3_+_140024043_140024043	4.66631	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086409|Rin2|ENSRNOG00000010131|Ras and Rab interactor 2 [Source:RGD Symbol%3BAcc:1305873]
rn6_v1_chr4_-_28702559_28702559	4.51835	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000013910|Calcr|ENSRNOG00000010053|calcitonin receptor [Source:RGD Symbol%3BAcc:621001]	ENSRNOT00000013937|Calcr|ENSRNOG00000010053|calcitonin receptor [Source:RGD Symbol%3BAcc:621001]
rn6_v1_chr8_-_109560747_109560747	4.51368	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087334|Ppp2r3a|ENSRNOG00000022999|protein phosphatase 2%2C regulatory subunit B''%2C alpha [Source:RGD Symbol%3BAcc:1306958]
rn6_v1_chr20_+_5008508_5008508	4.43613	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000001153|Vwa7|ENSRNOG00000000860|von Willebrand factor A domain containing 7 [Source:RGD Symbol%3BAcc:1303137]
rn6_v1_chr11_+_46793777_46793777	4.33679	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000002232|Adgrg7|ENSRNOG00000001634|adhesion G protein-coupled receptor G7 [Source:RGD Symbol%3BAcc:1307217]
rn6_v1_chr14_-_66978499_66978499	4.29413	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081601|Slit2|ENSRNOG00000003840|slit guidance ligand 2 [Source:RGD Symbol%3BAcc:69310]
rn6_v1_chr7_+_130042947_130042947	4.13175	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089707|Panx2|ENSRNOG00000055530|pannexin 2 [Source:RGD Symbol%3BAcc:735191]
rn6_v1_chr1_-_126211439_126211439	4.04132	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000014988|Tjp1|ENSRNOG00000011077|tight junction protein 1 [Source:RGD Symbol%3BAcc:1306305]
rn6_v1_chr3_-_78112770_78112770	3.95859	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000008396|Olr694|ENSRNOG00000006415|olfactory receptor 694 [Source:RGD Symbol%3BAcc:1333350]
rn6_v1_chr1_-_169344306_169344306	3.81584	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022852|Ubqlnl|ENSRNOG00000017016|ubiquilin-like [Source:RGD Symbol%3BAcc:1307202]
rn6_v1_chr8_+_117906014_117906014	3.77238	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000056180|Spink8|ENSRNOG00000037199|serine peptidase inhibitor%2C Kazal type 8 [Source:RGD Symbol%3BAcc:1307150]
rn6_v1_chr16_+_22361998_22361998	3.74009	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000016193|Slc18a1|ENSRNOG00000011992|solute carrier family 18 member A1 [Source:RGD Symbol%3BAcc:3693]
rn6_v1_chr2_-_154418920_154418920	3.72372	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000076326|Plch1|ENSRNOG00000009955|phospholipase C%2C eta 1 [Source:RGD Symbol%3BAcc:1561991]
rn6_v1_chr1_+_78546012_78546012	3.70899	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000058172|Gng5|ENSRNOG00000038205|G protein subunit gamma 5 [Source:RGD Symbol%3BAcc:620807]
rn6_v1_chr18_-_26211445_26211445	3.69237	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000027739|Nrep|ENSRNOG00000020467|neuronal regeneration related protein [Source:RGD Symbol%3BAcc:631411]
rn6_v1_chr8_+_119030875_119030875	3.63567	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000028458|Myl3|ENSRNOG00000020955|myosin light chain 3 [Source:RGD Symbol%3BAcc:3142]
rn6_v1_chr17_-_42127678_42127678	3.48895	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000024196|Gpld1|ENSRNOG00000017702|glycosylphosphatidylinositol specific phospholipase D1 [Source:RGD Symbol%3BAcc:631371]
rn6_v1_chr7_-_134722215_134722215	3.47827	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036750|Prickle1|ENSRNOG00000022772|prickle planar cell polarity protein 1 [Source:RGD Symbol%3BAcc:735090]
rn6_v1_chr7_-_118332577_118332577	3.43597	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090370|Rbfox2|ENSRNOG00000004688|RNA binding protein%2C fox-1 homolog 2 [Source:RGD Symbol%3BAcc:1311838]
rn6_v1_chr6_-_22138286_22138286	3.36814	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007607|Yipf4|ENSRNOG00000005610|Yip1 domain family%2C member 4 [Source:RGD Symbol%3BAcc:1310157]
rn6_v1_chr14_+_39368530_39368530	3.298	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000084367|Cox7b2|ENSRNOG00000057953|cytochrome c oxidase subunit 7B2 [Source:RGD Symbol%3BAcc:2319120]
rn6_v1_chr15_+_50891127_50891127	3.25706	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000020728|Stc1|ENSRNOG00000015075|stanniocalcin 1 [Source:RGD Symbol%3BAcc:621776]
rn6_v1_chr10_+_84119884_84119884	3.21254	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009951|Hoxb9|ENSRNOG00000007573|homeo box B9 [Source:RGD Symbol%3BAcc:1306158]
rn6_v1_chr4_-_157486844_157486914	3.15993	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000038281|Cops7a|ENSRNOG00000016778|COP9 signalosome subunit 7A [Source:RGD Symbol%3BAcc:1310070]	ENSRNOT00000022874|Cops7a|ENSRNOG00000016778|COP9 signalosome subunit 7A [Source:RGD Symbol%3BAcc:1310070]
rn6_v1_chr1_+_193424812_193424812	3.11402	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019939|Aqp8|ENSRNOG00000014652|aquaporin 8 [Source:RGD Symbol%3BAcc:2146]
rn6_v1_chrX_+_33884499_33884499	3.11329	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090041|Reps2|ENSRNOG00000061508|RALBP1 associated Eps domain containing protein 2 [Source:MGI Symbol%3BAcc:MGI:2663511]
rn6_v1_chr5_+_172488708_172488708	3.08486	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019930|Morn1|ENSRNOG00000014642|MORN repeat containing 1 [Source:RGD Symbol%3BAcc:1359433]
rn6_v1_chrM_+_8599_8599	3.05274	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000049683|Mt-cox3|ENSRNOG00000030700|mitochondrially encoded cytochrome C oxidase III [Source:RGD Symbol%3BAcc:621873]
rn6_v1_chr8_+_42613601_42613601	2.98448	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000040297|Olr1264|ENSRNOG00000030000|olfactory receptor 1264 [Source:RGD Symbol%3BAcc:1332727]
rn6_v1_chr15_+_17775692_17775692	2.96253	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061169|LOC361016|ENSRNOG00000007206|similar to RIKEN cDNA 4933406L09 [Source:RGD Symbol%3BAcc:1359720]
rn6_v1_chr5_+_71742911_71742911	2.93393	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047225|Zfp462|ENSRNOG00000032048|zinc finger protein 462 [Source:RGD Symbol%3BAcc:1562123]
rn6_v1_chr7_-_69982592_69982592	2.86742	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000040010|RGD1564306|ENSRNOG00000032335|similar to developmental pluripotency associated 5 [Source:RGD Symbol%3BAcc:1564306]
rn6_v1_chr19_+_53044379_53044379	2.86363	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072369|Foxc2|ENSRNOG00000047446|forkhead box C2 [Source:RGD Symbol%3BAcc:621703]
rn6_v1_chr9_+_73529612_73529612	2.85345	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032430|Unc80|ENSRNOG00000028362|unc-80 homolog%2C NALCN activator [Source:RGD Symbol%3BAcc:1309976]
rn6_v1_chrX_+_104734082_104734082	2.77383	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005020|Srpx2|ENSRNOG00000003715|sushi-repeat-containing protein%2C X-linked 2 [Source:RGD Symbol%3BAcc:1562444]
rn6_v1_chrM_+_7758_7758	2.75477	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000046201|Mt-atp8|ENSRNOG00000033299|mitochondrially encoded ATP synthase 8 [Source:RGD Symbol%3BAcc:621240]
rn6_v1_chr2_-_79078258_79078258	2.70735	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000031170|Fbxl7|ENSRNOG00000024433|F-box and leucine-rich repeat protein 7 [Source:RGD Symbol%3BAcc:1305813]
rn6_v1_chr7_+_64768742_64768742	2.69688	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005545|Grip1|ENSRNOG00000004013|glutamate receptor interacting protein 1 [Source:RGD Symbol%3BAcc:621667]
rn6_v1_chr2_-_250805445_250805445	2.68728	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055362|Clca4l|ENSRNOG00000036877|chloride channel calcium activated 4-like [Source:RGD Symbol%3BAcc:1591945]
rn6_v1_chr17_-_22143324_22143324	2.64079	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019361|Edn1|ENSRNOG00000014361|endothelin 1 [Source:RGD Symbol%3BAcc:2532]
rn6_v1_chrM_+_7919_7919	2.58747	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000046108|Mt-atp6|ENSRNOG00000031979|mitochondrially encoded ATP synthase 6 [Source:RGD Symbol%3BAcc:621239]
rn6_v1_chr16_+_50152008_50152008	2.52925	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000019237|Klkb1|ENSRNOG00000014118|kallikrein B1 [Source:RGD Symbol%3BAcc:67382]
rn6_v1_chr6_+_76041669_76041669	2.49198	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000039829|Fam177a1|ENSRNOG00000046391|family with sequence similarity 177%2C member A1 [Source:RGD Symbol%3BAcc:2323636]
rn6_v1_chr7_+_34533543_34533584	2.43432	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007412|Ntn4|ENSRNOG00000005573|netrin 4 [Source:RGD Symbol%3BAcc:1565947]	ENSRNOT00000084185|Ntn4|ENSRNOG00000005573|netrin 4 [Source:RGD Symbol%3BAcc:1565947]
rn6_v1_chr5_-_50221095_50221095	2.34719	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012164|RGD1563056|ENSRNOG00000009178|similar to hypothetical protein [Source:RGD Symbol%3BAcc:1563056]
rn6_v1_chr13_+_91080341_91080341	2.34625	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000000058|Crp|ENSRNOG00000000053|C-reactive protein [Source:RGD Symbol%3BAcc:2411]
rn6_v1_chr2_+_54466280_54466280	2.31914	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000033112|C6|ENSRNOG00000024115|complement C6 [Source:RGD Symbol%3BAcc:2238]
rn6_v1_chr5_-_6186329_6186329	2.19117	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012610|Sulf1|ENSRNOG00000009037|sulfatase 1 [Source:RGD Symbol%3BAcc:708554]
rn6_v1_chr20_+_5049496_5049505	2.16932	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088251|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]	ENSRNOT00000001118|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]
rn6_v1_chr4_-_84131030_84131030	2.14832	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012196|Cpvl|ENSRNOG00000009172|carboxypeptidase%2C vitellogenic-like [Source:RGD Symbol%3BAcc:1563609]
rn6_v1_chr6_-_8344574_8344574	2.14208	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009660|Prepl|ENSRNOG00000007326|prolyl endopeptidase-like [Source:RGD Symbol%3BAcc:1310143]
rn6_v1_chr10_+_71546977_71546977	2.13557	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041140|Acaca|ENSRNOG00000034013|acetyl-CoA carboxylase alpha [Source:RGD Symbol%3BAcc:621248]
rn6_v1_chr9_+_118586179_118586179	2.12657	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022351|Dlgap1|ENSRNOG00000016196|DLG associated protein 1 [Source:RGD Symbol%3BAcc:620223]
rn6_v1_chr16_-_16762240_16762240	2.1001	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080746|AABR07024790.1|ENSRNOG00000051423|
rn6_v1_chr4_-_167068838_167068838	2.05737	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000029713|Tas2r125|ENSRNOG00000021397|taste receptor%2C type 2%2C member 125 [Source:RGD Symbol%3BAcc:1596030]
rn6_v1_chr13_-_37697569_37697569	2.04101	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045263|LOC680288|ENSRNOG00000029868|similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9) [Source:RGD Symbol%3BAcc:1594144]
rn6_v1_chr13_+_26463404_26463404	2.01308	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061779|LOC103690041|ENSRNOG00000047721|serpin B12-like [Source:RGD Symbol%3BAcc:9188748]
rn6_v1_chrM_+_2740_2740	1.98962	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047550|Mt-nd1|ENSRNOG00000030644|mitochondrially encoded NADH dehydrogenase 1 [Source:RGD Symbol%3BAcc:620555]
rn6_v1_chr2_-_231409988_231409988	1.98266	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080637|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000037255|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000074002|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr14_+_104480662_104480662	1.97446	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078710|Rab1a|ENSRNOG00000004992|RAB1A%2C member RAS oncogene family [Source:RGD Symbol%3BAcc:619736]
rn6_v1_chr3_+_54253949_54253949	1.97024	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000010018|B3galt1|ENSRNOG00000007625|Beta-1%2C3-galactosyltransferase 1 [Source:RGD Symbol%3BAcc:1311898]
rn6_v1_chr17_+_32973695_32973695	1.89725	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065674|RGD1565323|ENSRNOG00000021789|similar to OTTMUSP00000000621 [Source:RGD Symbol%3BAcc:1565323]
rn6_v1_chr7_+_142575672_142575677	1.88989	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080923|Scn8a|ENSRNOG00000005309|sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol%3BAcc:3638]	ENSRNOT00000008160|Scn8a|ENSRNOG00000005309|sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol%3BAcc:3638]
rn6_v1_chr16_+_74785281_74785281	1.85214	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000064316|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]	ENSRNOT00000017106|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]	ENSRNOT00000090646|Nek3|ENSRNOG00000012757|NIMA-related kinase 3 [Source:RGD Symbol%3BAcc:1307419]
rn6_v1_chr6_+_94835845_94835845	1.82835	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000006321|Jkamp|ENSRNOG00000004751|JNK1/MAPK8-associated membrane protein [Source:RGD Symbol%3BAcc:1308917]
rn6_v1_chr1_+_125124743_125124743	1.82391	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021530|Mtmr10|ENSRNOG00000016090|myotubularin related protein 10 [Source:RGD Symbol%3BAcc:1305958]
rn6_v1_chr5_-_113880911_113880911	1.76996	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000029441|Eqtn|ENSRNOG00000026323|equatorin [Source:RGD Symbol%3BAcc:1563332]
rn6_v1_chr4_-_176679815_176679815	1.72503	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090122|Gys2|ENSRNOG00000059753|glycogen synthase 2 [Source:RGD Symbol%3BAcc:2773]
rn6_v1_chr1_-_198652674_198652674	1.69606	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023706|Tbc1d10b|ENSRNOG00000017349|TBC1 domain family%2C member 10b [Source:RGD Symbol%3BAcc:1309191]
rn6_v1_chr7_+_58814805_58814805	1.67195	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005909|Tspan8|ENSRNOG00000004411|tetraspanin 8 [Source:RGD Symbol%3BAcc:621783]
rn6_v1_chr1_+_44311513_44311513	1.61898	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065386|Tiam2|ENSRNOG00000016728|T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol%3BAcc:2324148]
rn6_v1_chr2_+_188745503_188745503	1.61724	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000056652|Shc1|ENSRNOG00000020657|SHC adaptor protein 1 [Source:RGD Symbol%3BAcc:620446]
rn6_v1_chr3_-_52510507_52510507	1.57036	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000091259|Scn1a|ENSRNOG00000053122|sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol%3BAcc:69364]
rn6_v1_chr3_-_72219246_72219246	1.54551	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009903|Smtnl1|ENSRNOG00000007516|smoothelin-like 1 [Source:RGD Symbol%3BAcc:1311701]
rn6_v1_chr2_-_231409496_231409496	1.5401	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055615|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000015386|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]	ENSRNOT00000068415|Ank2|ENSRNOG00000011076|ankyrin 2 [Source:RGD Symbol%3BAcc:620156]
rn6_v1_chr18_+_35136132_35136132	1.52601	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078731|Spink5|ENSRNOG00000013116|serine peptidase inhibitor%2C Kazal type 5 [Source:RGD Symbol%3BAcc:1306540]
rn6_v1_chr17_+_31236015_31236015	1.48944	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023149|Slc22a23|ENSRNOG00000017210|solute carrier family 22%2C member 23 [Source:RGD Symbol%3BAcc:620302]
rn6_v1_chr14_+_9555264_9555264	1.46404	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000002928|Nkx6-1|ENSRNOG00000002149|NK6 homeobox 1 [Source:RGD Symbol%3BAcc:69318]
rn6_v1_chr2_+_22910236_22910236	1.46236	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000078266|Homer1|ENSRNOG00000047014|homer scaffolding protein 1 [Source:RGD Symbol%3BAcc:628725]
rn6_v1_chr12_+_9464026_9464026	1.45914	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000048188|Cdx2|ENSRNOG00000032759|caudal type homeo box 2 [Source:RGD Symbol%3BAcc:621234]
rn6_v1_chr10_+_78416946_78416946	1.40193	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000042211|AABR07030263.1|ENSRNOG00000032558|
rn6_v1_chr9_-_85617954_85617954	1.37749	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000077331|Serpine2|ENSRNOG00000015461|serpin family E member 2 [Source:RGD Symbol%3BAcc:3748]
rn6_v1_chr8_-_23000455_23000485	1.34328	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000091027|Rgl3|ENSRNOG00000013027|ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol%3BAcc:1309756]	ENSRNOT00000017493|Rgl3|ENSRNOG00000013027|ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol%3BAcc:1309756]
rn6_v1_chr4_-_120157477_120157477	1.33914	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000046568|AABR07061382.1|ENSRNOG00000034129|
rn6_v1_chr8_+_118066988_118066988	1.31876	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000056161|Map4|ENSRNOG00000020748|microtubule-associated protein 4 [Source:RGD Symbol%3BAcc:1564359]
rn6_v1_chr5_-_17399801_17399801	1.28696	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000011900|RGD1563405|ENSRNOG00000009002|similar to protein tyrosine phosphatase 4a2 [Source:RGD Symbol%3BAcc:1563405]
rn6_v1_chr18_+_29999290_29999290	1.28037	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000027372|Pcdha4|ENSRNOG00000020119|protocadherin alpha 4 [Source:RGD Symbol%3BAcc:620337]
rn6_v1_chr11_-_89260297_89260297	1.27347	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000057502|Spidr|ENSRNOG00000037851|scaffolding protein involved in DNA repair [Source:RGD Symbol%3BAcc:1566036]
rn6_v1_chr1_-_168611670_168611670	1.25134	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000021273|Olr106|ENSRNOG00000015893|olfactory receptor 106 [Source:RGD Symbol%3BAcc:1334302]
rn6_v1_chr1_+_31409579_31409579	1.2355	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000016989|RGD1311933|ENSRNOG00000012581|similar to RIKEN cDNA 2310057J18 [Source:RGD Symbol%3BAcc:1311933]
rn6_v1_chr2_+_52431601_52431601	1.23041	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023554|Hmgcs1|ENSRNOG00000016552|3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:RGD Symbol%3BAcc:70970]
rn6_v1_chr2_+_193778042_193778042	1.1987	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000090212|Tchh|ENSRNOG00000056746|trichohyalin [Source:RGD Symbol%3BAcc:1309635]
rn6_v1_chr17_-_14627937_14627937	1.19282	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000020532|NEWGENE_1308171|ENSRNOG00000029792|osteoglycin [Source:RGD Symbol%3BAcc:11378586]
rn6_v1_chr3_+_43255567_43255567	1.17151	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000044419|Gpd2|ENSRNOG00000033824|glycerol-3-phosphate dehydrogenase 2 [Source:RGD Symbol%3BAcc:2726]
rn6_v1_chr1_+_14797766_14797766	1.12416	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000016048|Olig3|ENSRNOG00000012057|oligodendrocyte transcription factor 3 [Source:RGD Symbol%3BAcc:1305997]
rn6_v1_chr20_+_3364814_3364814	1.10312	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000001077|RGD1302996|ENSRNOG00000000812|hypothetical protein MGC:15854 [Source:RGD Symbol%3BAcc:1302996]
rn6_v1_chr13_+_95887708_95887708	1.09394	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000029081|LOC689766|ENSRNOG00000021411|hypothetical protein LOC689766 [Source:RGD Symbol%3BAcc:1588722]
rn6_v1_chr7_+_64769089_64769089	1.0368	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088861|Grip1|ENSRNOG00000004013|glutamate receptor interacting protein 1 [Source:RGD Symbol%3BAcc:621667]
rn6_v1_chr1_+_230811800_230811800	0.983071	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000041509|Olr384|ENSRNOG00000032117|olfactory receptor 384 [Source:RGD Symbol%3BAcc:1333930]
rn6_v1_chr8_+_130350510_130350510	0.977599	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073376|Ss18l2|ENSRNOG00000047853|SS18 like 2 [Source:RGD Symbol%3BAcc:1590139]
rn6_v1_chr3_+_48096954_48096954	0.977289	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000068238|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000064344|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]	ENSRNOT00000044638|Slc4a10|ENSRNOG00000005307|solute carrier family 4 member 10 [Source:RGD Symbol%3BAcc:631407]
rn6_v1_chr20_+_29558689_29558689	0.94989	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000085229|Ascc1|ENSRNOG00000056647|activating signal cointegrator 1 complex subunit 1 [Source:RGD Symbol%3BAcc:1359255]
rn6_v1_chr8_-_60570058_60570058	0.947498	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009169|Scaper|ENSRNOG00000006864|S-phase cyclin A-associated protein in the ER [Source:RGD Symbol%3BAcc:621585]
rn6_v1_chr13_+_71305548_71305548	0.944089	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000074864|LOC684709|ENSRNOG00000046786|similar to putative membrane protein Re9 [Source:RGD Symbol%3BAcc:1586783]
rn6_v1_chr2_+_243577082_243577082	0.925901	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000016556|Adh6a|ENSRNOG00000012281|alcohol dehydrogenase 6A (class V) [Source:RGD Symbol%3BAcc:1310029]
rn6_v1_chr18_+_17403407_17403407	0.913737	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000045150|RGD1562608|ENSRNOG00000029466|similar to KIAA1328 protein [Source:RGD Symbol%3BAcc:1562608]
rn6_v1_chr7_-_13404858_13404858	0.910157	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000060456|Olr1075|ENSRNOG00000039449|olfactory receptor 1075 [Source:RGD Symbol%3BAcc:1333658]
rn6_v1_chr10_-_63274640_63274640	0.901932	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000005129|Tmigd1|ENSRNOG00000003865|transmembrane and immunoglobulin domain containing 1 [Source:RGD Symbol%3BAcc:1307444]
rn6_v1_chr20_-_5064469_5064469	0.874815	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000001120|Ly6g6d|ENSRNOG00000000844|lymphocyte antigen 6 complex%2C locus G6D [Source:RGD Symbol%3BAcc:1303064]
rn6_v1_chr20_-_1099336_1099336	0.87384	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000071766|LOC100362856|ENSRNOG00000050316|olfactory receptor-like protein-like [Source:RGD Symbol%3BAcc:2323923]
rn6_v1_chr3_-_78790691_78790691	0.867176	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000008750|Olr724|ENSRNOG00000006706|olfactory receptor 724 [Source:RGD Symbol%3BAcc:1333962]
rn6_v1_chr6_+_37144787_37144787	0.851816	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000075503|Rad51ap2|ENSRNOG00000049271|RAD51 associated protein 2 [Source:RGD Symbol%3BAcc:2322652]
rn6_v1_chr9_+_16737642_16737642	0.801853	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061430|Srf|ENSRNOG00000018232|serum response factor [Source:RGD Symbol%3BAcc:1559787]
rn6_v1_chr1_+_99616447_99616447	0.788646	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000029197|Klk14|ENSRNOG00000033706|kallikrein related-peptidase 14 [Source:RGD Symbol%3BAcc:1308606]
rn6_v1_chr1_+_80880856_80880856	0.784818	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000026060|Ceacam20|ENSRNOG00000019260|carcinoembryonic antigen-related cell adhesion molecule 20 [Source:RGD Symbol%3BAcc:1311281]
rn6_v1_chr7_-_145062956_145062956	0.73394	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055274|RGD1563200|ENSRNOG00000036830|similar to CDNA sequence BC048502 [Source:RGD Symbol%3BAcc:1563200]
rn6_v1_chr9_-_81879211_81879211	0.729877	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000085140|Rnf25|ENSRNOG00000016886|ring finger protein 25 [Source:RGD Symbol%3BAcc:1311557]
rn6_v1_chrX_+_6273733_6273733	0.724469	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000074275|Ndp|ENSRNOG00000046042|NDP%2C norrin cystine knot growth factor [Source:RGD Symbol%3BAcc:1563968]
rn6_v1_chr5_+_128881062_128881062	0.689645	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000057216|Calr4|ENSRNOG00000037710|calreticulin 4 [Source:RGD Symbol%3BAcc:1591090]
rn6_v1_chr10_+_84031955_84031955	0.689356	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000009934|Hoxb13|ENSRNOG00000007491|homeo box B13 [Source:RGD Symbol%3BAcc:1309113]
rn6_v1_chr11_+_28780446_28780446	0.6759	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072546|Krtap15-1|ENSRNOG00000049399|keratin associated protein 15-1 [Source:RGD Symbol%3BAcc:1311088]
rn6_v1_chr6_-_103949275_103949275	0.627281	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047825|AABR07065012.1|ENSRNOG00000032248|
rn6_v1_chr1_-_172215730_172215730	0.625761	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055175|Olr244|ENSRNOG00000045879|olfactory receptor 244 [Source:RGD Symbol%3BAcc:1332781]
rn6_v1_chr13_+_90533365_90533365	0.572968	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000082469|Dcaf8|ENSRNOG00000006785|DDB1 and CUL4 associated factor 8 [Source:RGD Symbol%3BAcc:1308513]
rn6_v1_chr9_+_66888393_66888393	0.517382	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000023536|Carf|ENSRNOG00000017491|calcium responsive transcription factor [Source:RGD Symbol%3BAcc:1306822]
rn6_v1_chr7_+_140829076_140829076	0.503656	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086179|Spats2|ENSRNOG00000052307|spermatogenesis associated%2C serine-rich 2 [Source:RGD Symbol%3BAcc:1304780]
rn6_v1_chr8_+_106816152_106816152	0.500323	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047613|Faim|ENSRNOG00000030069|Fas apoptotic inhibitory molecule [Source:RGD Symbol%3BAcc:620572]
rn6_v1_chr1_+_150492239_150492248	0.489257	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047771|AABR07004684.1|ENSRNOG00000033507|	ENSRNOT00000048404|AABR07004684.1|ENSRNOG00000033507|
rn6_v1_chr18_-_6587080_6587080	0.489018	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000040815|LOC103694404|ENSRNOG00000032835|60S ribosomal protein L39 [Source:RGD Symbol%3BAcc:9200697]
rn6_v1_chr11_+_43486904_43486904	0.479329	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083800|Olr1549|ENSRNOG00000057043|olfactory receptor 1549 [Source:RGD Symbol%3BAcc:1333231]
rn6_v1_chr2_+_112868707_112868707	0.477679	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000017805|Nceh1|ENSRNOG00000013313|neutral cholesterol ester hydrolase 1 [Source:RGD Symbol%3BAcc:1311104]
rn6_v1_chr2_+_166856784_166856784	0.455283	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000035765|Otol1|ENSRNOG00000021186|otolin 1 [Source:RGD Symbol%3BAcc:1562064]
rn6_v1_chr10_+_45322248_45322248	0.432297	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000047268|Trim11|ENSRNOG00000002915|tripartite motif-containing 11 [Source:RGD Symbol%3BAcc:1305448]
rn6_v1_chrX_-_23144324_23144324	0.42935	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000000178|Pfkfb1|ENSRNOG00000000165|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 1 [Source:RGD Symbol%3BAcc:3307]	ENSRNOT00000081239|Pfkfb1|ENSRNOG00000000165|6-phosphofructo-2-kinase/fructose-2%2C6-biphosphatase 1 [Source:RGD Symbol%3BAcc:3307]
rn6_v1_chr17_-_35126393_35126393	0.426806	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080609|LOC103694079|ENSRNOG00000052192|vacuolar ATPase assembly integral membrane protein Vma21-like [Source:RGD Symbol%3BAcc:9104485]
rn6_v1_chr12_-_11175917_11175917	0.42631	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000079573|Zkscan5|ENSRNOG00000059552|zinc finger with KRAB and SCAN domains 5 [Source:RGD Symbol%3BAcc:1311175]
rn6_v1_chr7_+_40318490_40318490	0.425567	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000081374|LOC500827|ENSRNOG00000051928|similar to hypothetical protein FLJ35821 [Source:RGD Symbol%3BAcc:1563125]
rn6_v1_chr4_+_31333970_31333970	0.419422	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000064866|LOC100911994|ENSRNOG00000050855|coiled-coil domain-containing protein 132-like [Source:RGD Symbol%3BAcc:6489220]
rn6_v1_chr1_-_80331626_80331626	0.410145	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022577|AABR07002677.1|ENSRNOG00000029745|
rn6_v1_chr2_+_237755673_237755673	0.40721	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083937|Tbck|ENSRNOG00000011454|TBC1 domain containing kinase [Source:RGD Symbol%3BAcc:1307816]
rn6_v1_chr1_-_86263534_86263534	0.401007	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000044825|Fpr-rs6|ENSRNOG00000048014|formyl peptide receptor%2C related sequence 6 [Source:RGD Symbol%3BAcc:1582880]
rn6_v1_chr3_+_76179214_76179214	0.39334	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000071281|LOC686677|ENSRNOG00000046185|similar to olfactory receptor 1161 [Source:RGD Symbol%3BAcc:1594971]
rn6_v1_chr13_+_71322759_71322759	0.359431	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000071815|Teddm1|ENSRNOG00000048614|transmembrane epididymal protein 1 [Source:RGD Symbol%3BAcc:1593124]
rn6_v1_chr3_-_21061070_21061070	0.354593	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000044461|Olr422|ENSRNOG00000032102|olfactory receptor 422 [Source:RGD Symbol%3BAcc:1332758]
rn6_v1_chr12_+_7865938_7865938	0.304874	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000061229|Ubl3|ENSRNOG00000000921|ubiquitin-like 3 [Source:RGD Symbol%3BAcc:1305431]
rn6_v1_chr1_-_150101177_150101177	0.27589	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000042931|Olr24|ENSRNOG00000050054|olfactory receptor 24 [Source:RGD Symbol%3BAcc:1334267]
rn6_v1_chr2_-_188745144_188745144	0.247826	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000055533|Cks1b|ENSRNOG00000042561|CDC28 protein kinase regulatory subunit 1B [Source:RGD Symbol%3BAcc:1561797]
rn6_v1_chr4_+_1601652_1601652	0.241374	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000072284|LOC100912152|ENSRNOG00000049611|olfactory receptor 8B3-like [Source:RGD Symbol%3BAcc:6488812]
rn6_v1_chr9_+_100489852_100489852	0.238624	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022854|Ppp1r7|ENSRNOG00000016974|protein phosphatase 1%2C regulatory subunit 7 [Source:RGD Symbol%3BAcc:1308169]
rn6_v1_chr4_+_6559545_6559545	0.235896	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067183|Prkag2|ENSRNOG00000009085|protein kinase AMP-activated non-catalytic subunit gamma 2 [Source:RGD Symbol%3BAcc:727782]
rn6_v1_chr15_-_43542939_43542939	0.233135	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012996|Dpysl2|ENSRNOG00000009625|dihydropyrimidinase-like 2 [Source:RGD Symbol%3BAcc:2517]
rn6_v1_chr1_+_277355619_277355619	0.224139	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022788|Nhlrc2|ENSRNOG00000016948|NHL repeat containing 2 [Source:RGD Symbol%3BAcc:1307348]
rn6_v1_chr3_-_76135475_76135475	0.221481	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000007712|Olr604|ENSRNOG00000005880|olfactory receptor 604 [Source:RGD Symbol%3BAcc:1333473]
rn6_v1_chr9_+_88494676_88494676	0.198676	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000089451|LOC102556337|ENSRNOG00000048016|mitochondrial fission factor-like [Source:RGD Symbol%3BAcc:7706142]
rn6_v1_chr8_+_42338410_42338410	0.17931	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000073541|Olr1246|ENSRNOG00000049805|olfactory receptor 1246 [Source:RGD Symbol%3BAcc:1334003]
rn6_v1_chr2_-_120316357_120316357	0.172474	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000065469|Ccdc39|ENSRNOG00000011440|coiled-coil domain containing 39 [Source:RGD Symbol%3BAcc:1306277]
rn6_v1_chr1_+_172283255_172283255	0.156903	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000049260|Olr247|ENSRNOG00000048525|olfactory receptor 247 [Source:RGD Symbol%3BAcc:1334362]
rn6_v1_chr6_+_107603580_107603580	0.155513	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000036430|Dnal1|ENSRNOG00000042333|dynein%2C axonemal%2C light chain 1 [Source:RGD Symbol%3BAcc:1591349]
rn6_v1_chr8_-_49106177_49106177	0.151716	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000067558|Tmem25|ENSRNOG00000014218|transmembrane protein 25 [Source:RGD Symbol%3BAcc:1596132]
rn6_v1_chr10_-_16731898_16731898	0.151128	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000028186|Crebrf|ENSRNOG00000020769|CREB3 regulatory factor [Source:RGD Symbol%3BAcc:1310862]
rn6_v1_chr3_-_72895740_72895740	0.13733	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000012568|Fads2l1|ENSRNOG00000009399|fatty acid desaturase 2-like 1 [Source:RGD Symbol%3BAcc:1311224]
rn6_v1_chr1_+_64928503_64928503	0.132049	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086274|Vom2r80|ENSRNOG00000055298|vomeronasal 2 receptor%2C 80 [Source:RGD Symbol%3BAcc:1559687]
rn6_v1_chr18_+_4365429_4365429	0.119377	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000022744|Hrh4|ENSRNOG00000016887|histamine receptor H4 [Source:RGD Symbol%3BAcc:620631]
rn6_v1_chr10_-_87248572_87248632	0.118396	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000066637|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]	ENSRNOT00000085677|Krt26|ENSRNOG00000033617|keratin 26 [Source:RGD Symbol%3BAcc:1303322]
rn6_v1_chr8_-_20443068_20443068	0.0926566	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086296|Olr1172|ENSRNOG00000052784|olfactory receptor 1172 [Source:RGD Symbol%3BAcc:1334163]
rn6_v1_chr18_+_69818720_69818720	0.0804265	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000043108|LOC680512|ENSRNOG00000033808|similar to 60S ribosomal protein L38 [Source:RGD Symbol%3BAcc:1590648]
rn6_v1_chr19_-_17045349_17045349	0.0721495	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000086829|Fto|ENSRNOG00000011728|FTO%2C alpha-ketoglutarate dependent dioxygenase [Source:RGD Symbol%3BAcc:1305121]
rn6_v1_chr1_-_63457134_63457134	0.0651385	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000083436|AABR07071874.1|ENSRNOG00000055529|
rn6_v1_chr3_+_102841615_102841615	0.0582848	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000075178|Olr770|ENSRNOG00000047449|olfactory receptor 770 [Source:RGD Symbol%3BAcc:1332807]
rn6_v1_chr4_+_158243086_158243086	0.0525942	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000032112|Ano2|ENSRNOG00000023561|anoctamin 2 [Source:RGD Symbol%3BAcc:1591606]
rn6_v1_chr13_+_91711995_91711995	0.0431538	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000040596|Olr1582|ENSRNOG00000046512|olfactory receptor 1582 [Source:RGD Symbol%3BAcc:1333672]
rn6_v1_chr5_+_25725683_25725683	0.0398994	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000087602|LOC679087|ENSRNOG00000055292|similar to swan [Source:RGD Symbol%3BAcc:1593040]
rn6_v1_chr14_-_3288017_3288017	0.0357532	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000080452|LOC689986|ENSRNOG00000047876|hypothetical protein LOC689986 [Source:RGD Symbol%3BAcc:1586315]
rn6_v1_chr18_-_58097316_58097316	0.0190435	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000088527|AABR07032265.1|ENSRNOG00000059754|
rn6_v1_chr8_+_1459526_1459526	0.0128552	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000034503|Kbtbd3|ENSRNOG00000022252|kelch repeat and BTB domain containing 3 [Source:RGD Symbol%3BAcc:1310895]
rn6_v1_chr1_+_266844480_266844480	0.0118396	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000027482|Taf5|ENSRNOG00000020274|TATA-box binding protein associated factor 5 [Source:RGD Symbol%3BAcc:1311332]
rn6_v1_chr4_+_114784408_114784408	0.00539186	Hoxd11_Cdx1_Hoxc11	ENSRNOT00000011189|LOC103692168|ENSRNOG00000008466|transcription factor LBX2 [Source:RGD Symbol%3BAcc:9451642]
