rn6_v1_chr8_-_47094352_47094352	11.6459	Msx2_Hoxd4	ENSRNOT00000048347|Grik4|ENSRNOG00000030910|glutamate ionotropic receptor kainate type subunit 4 [Source:RGD Symbol%3BAcc:2734]
rn6_v1_chr20_-_25826658_25826658	7.78285	Msx2_Hoxd4	ENSRNOT00000057950|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]	ENSRNOT00000084660|Ctnna3|ENSRNOG00000000373|catenin alpha 3 [Source:RGD Symbol%3BAcc:1562230]
rn6_v1_chr6_+_64789940_64790112	7.6733	Msx2_Hoxd4	ENSRNOT00000085979|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000059739|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000051908|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000082793|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000078583|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000091677|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]	ENSRNOT00000093241|Nrcam|ENSRNOG00000004067|neuronal cell adhesion molecule [Source:RGD Symbol%3BAcc:3209]
rn6_v1_chr15_-_71779033_71779033	6.14039	Msx2_Hoxd4	ENSRNOT00000017765|Pcdh20|ENSRNOG00000013306|protocadherin 20 [Source:RGD Symbol%3BAcc:1306297]
rn6_v1_chr7_+_44009069_44009069	5.94141	Msx2_Hoxd4	ENSRNOT00000005523|Mgat4c|ENSRNOG00000004149|MGAT4 family%2C member C [Source:RGD Symbol%3BAcc:1307871]
rn6_v1_chr4_-_64330996_64330996	5.81519	Msx2_Hoxd4	ENSRNOT00000016088|Ptn|ENSRNOG00000011946|pleiotrophin [Source:RGD Symbol%3BAcc:3444]
rn6_v1_chrX_+_84064427_84064427	5.51223	Msx2_Hoxd4	ENSRNOT00000046364|Zfp711|ENSRNOG00000022391|zinc finger protein 711 [Source:RGD Symbol%3BAcc:1562768]
rn6_v1_chr11_+_61605937_61606006	4.85385	Msx2_Hoxd4	ENSRNOT00000093455|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]	ENSRNOT00000093242|Gramd1c|ENSRNOG00000053406|GRAM domain containing 1C [Source:RGD Symbol%3BAcc:1305433]
rn6_v1_chr5_-_168734296_168734296	4.59272	Msx2_Hoxd4	ENSRNOT00000066120|Camta1|ENSRNOG00000018602|calmodulin binding transcription activator 1 [Source:RGD Symbol%3BAcc:1562703]
rn6_v1_chr2_-_35104963_35104963	4.56155	Msx2_Hoxd4	ENSRNOT00000018058|Rgs7bp|ENSRNOG00000013389|regulator of G-protein signaling 7-binding protein  [Source:RefSeq peptide%3BAcc:NP_001012347]
rn6_v1_chr9_+_73418607_73418607	4.42143	Msx2_Hoxd4	ENSRNOT00000092547|Map2|ENSRNOG00000011841|microtubule-associated protein 2 [Source:RGD Symbol%3BAcc:3044]
rn6_v1_chr9_-_30844199_30844199	4.35395	Msx2_Hoxd4	ENSRNOT00000017169|Col19a1|ENSRNOG00000012759|collagen type XIX alpha 1 chain [Source:RGD Symbol%3BAcc:1308920]
rn6_v1_chr7_-_69982592_69982592	3.8989	Msx2_Hoxd4	ENSRNOT00000040010|RGD1564306|ENSRNOG00000032335|similar to developmental pluripotency associated 5 [Source:RGD Symbol%3BAcc:1564306]
rn6_v1_chr3_+_61613774_61613774	3.58932	Msx2_Hoxd4	ENSRNOT00000002148|Hoxd10|ENSRNOG00000001581|homeo box D10 [Source:RGD Symbol%3BAcc:1306511]
rn6_v1_chr1_+_47032113_47032113	3.40936	Msx2_Hoxd4	ENSRNOT00000024412|Tulp4|ENSRNOG00000018012|tubby like protein 4 [Source:RGD Symbol%3BAcc:1564487]
rn6_v1_chr3_-_52447622_52447622	3.20485	Msx2_Hoxd4	ENSRNOT00000083552|Scn1a|ENSRNOG00000053122|sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol%3BAcc:69364]
rn6_v1_chr12_+_39423596_39423596	3.0083	Msx2_Hoxd4	ENSRNOT00000066952|Ift81|ENSRNOG00000001294|intraflagellar transport 81 [Source:RGD Symbol%3BAcc:727862]
rn6_v1_chrX_+_908044_908044	2.96421	Msx2_Hoxd4	ENSRNOT00000072087|Zfp300|ENSRNOG00000046469|zinc finger protein 300 [Source:RGD Symbol%3BAcc:2321626]
rn6_v1_chr3_-_25212049_25212049	2.90513	Msx2_Hoxd4	ENSRNOT00000040023|Lrp1b|ENSRNOG00000039050|LDL receptor related protein 1B [Source:RGD Symbol%3BAcc:1306160]
rn6_v1_chr18_+_54108493_54108493	2.80296	Msx2_Hoxd4	ENSRNOT00000029239|RGD1312005|ENSRNOG00000022429|similar to DD1 [Source:RGD Symbol%3BAcc:1312005]
rn6_v1_chr13_-_76049363_76049363	2.7007	Msx2_Hoxd4	ENSRNOT00000075865|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]	ENSRNOT00000007455|Brinp2|ENSRNOG00000005592|BMP/retinoic acid inducible neural specific 2 [Source:RGD Symbol%3BAcc:708419]
rn6_v1_chr5_+_104698040_104698040	2.61207	Msx2_Hoxd4	ENSRNOT00000009127|Adamtsl1|ENSRNOG00000006956|ADAMTS-like 1 [Source:RGD Symbol%3BAcc:1306439]
rn6_v1_chr11_-_782954_782954	2.59427	Msx2_Hoxd4	ENSRNOT00000040065|Epha3|ENSRNOG00000030285|Eph receptor A3 [Source:RGD Symbol%3BAcc:68389]
rn6_v1_chr2_+_127489771_127489771	2.49391	Msx2_Hoxd4	ENSRNOT00000093581|Intu|ENSRNOG00000010556|inturned planar cell polarity protein [Source:RGD Symbol%3BAcc:1309446]
rn6_v1_chr20_+_25990656_25990656	2.38839	Msx2_Hoxd4	ENSRNOT00000081254|Lrrtm3|ENSRNOG00000026466|leucine rich repeat transmembrane neuronal 3 [Source:RGD Symbol%3BAcc:1304866]
rn6_v1_chr6_-_76552559_76552559	2.38091	Msx2_Hoxd4	ENSRNOT00000065230|Ralgapa1|ENSRNOG00000046256|Ral GTPase activating protein catalytic alpha subunit 1 [Source:RGD Symbol%3BAcc:620642]
rn6_v1_chr2_-_210766501_210766501	2.37614	Msx2_Hoxd4	ENSRNOT00000025800|Gstm3|ENSRNOG00000019058|glutathione S-transferase mu 3 [Source:RGD Symbol%3BAcc:620381]
rn6_v1_chr13_-_86671515_86671515	2.30644	Msx2_Hoxd4	ENSRNOT00000082869|AABR07021704.1|ENSRNOG00000058096|
rn6_v1_chr18_-_26656879_26656879	2.06301	Msx2_Hoxd4	ENSRNOT00000086729|Epb41l4a|ENSRNOG00000026050|erythrocyte membrane protein band 4.1 like 4A [Source:RGD Symbol%3BAcc:1306034]
rn6_v1_chr13_-_27192592_27192592	1.94868	Msx2_Hoxd4	ENSRNOT00000040021|Serpinb3|ENSRNOG00000031134|serpin family B member 3 [Source:RGD Symbol%3BAcc:1549766]
rn6_v1_chr4_+_24222500_24222500	1.79808	Msx2_Hoxd4	ENSRNOT00000045346|Zfp804b|ENSRNOG00000031306|zinc finger protein 804B [Source:RGD Symbol%3BAcc:1589640]
rn6_v1_chr9_-_63641400_63641400	1.74559	Msx2_Hoxd4	ENSRNOT00000087684|Satb2|ENSRNOG00000010188|SATB homeobox 2 [Source:RGD Symbol%3BAcc:1562369]
rn6_v1_chr2_-_181531978_181531978	1.63947	Msx2_Hoxd4	ENSRNOT00000072029|Npy2r|ENSRNOG00000049213|neuropeptide Y receptor Y2 [Source:RGD Symbol%3BAcc:620475]
rn6_v1_chr10_+_65733991_65733991	1.61911	Msx2_Hoxd4	ENSRNOT00000013698|Slc46a1|ENSRNOG00000010291|solute carrier family 46 member 1 [Source:RGD Symbol%3BAcc:1309472]
rn6_v1_chr15_+_32894938_32894938	1.47804	Msx2_Hoxd4	ENSRNOT00000012837|Abhd4|ENSRNOG00000009244|abhydrolase domain containing 4 [Source:RGD Symbol%3BAcc:1311858]
rn6_v1_chr12_-_35979193_35979193	1.46004	Msx2_Hoxd4	ENSRNOT00000071104|Tmem132b|ENSRNOG00000038406|transmembrane protein 132B [Source:RGD Symbol%3BAcc:1566191]
rn6_v1_chr13_+_46169963_46169963	1.33796	Msx2_Hoxd4	ENSRNOT00000005212|Thsd7b|ENSRNOG00000003878|thrombospondin type 1 domain containing 7B [Source:RGD Symbol%3BAcc:1306938]
rn6_v1_chr15_+_56666012_56666012	1.31641	Msx2_Hoxd4	ENSRNOT00000013408|Htr2a|ENSRNOG00000010063|5-hydroxytryptamine receptor 2A [Source:RGD Symbol%3BAcc:61800]
rn6_v1_chr4_+_31333970_31333970	1.2928	Msx2_Hoxd4	ENSRNOT00000064866|LOC100911994|ENSRNOG00000050855|coiled-coil domain-containing protein 132-like [Source:RGD Symbol%3BAcc:6489220]
rn6_v1_chr7_+_35773928_35773928	1.23455	Msx2_Hoxd4	ENSRNOT00000034639|Cep83|ENSRNOG00000007859|centrosomal protein 83 [Source:RGD Symbol%3BAcc:1359593]
rn6_v1_chr5_-_128446725_128446725	1.20294	Msx2_Hoxd4	ENSRNOT00000011272|Btf3l4|ENSRNOG00000008512|basic transcription factor 3-like 4 [Source:RGD Symbol%3BAcc:1311774]
rn6_v1_chr8_-_43192910_43192910	1.01965	Msx2_Hoxd4	ENSRNOT00000060101|Olr1302|ENSRNOG00000039244|olfactory receptor 1302 [Source:RGD Symbol%3BAcc:1333329]
rn6_v1_chr9_+_10941613_10941613	1.00741	Msx2_Hoxd4	ENSRNOT00000070794|Sema6b|ENSRNOG00000045998|semaphorin 6B [Source:RGD Symbol%3BAcc:69278]
rn6_v1_chr7_-_143392777_143392777	0.997917	Msx2_Hoxd4	ENSRNOT00000086504|Krt72|ENSRNOG00000030876|keratin 72 [Source:RGD Symbol%3BAcc:1303216]	ENSRNOT00000038105|Krt72|ENSRNOG00000030876|keratin 72 [Source:RGD Symbol%3BAcc:1303216]
rn6_v1_chr8_+_56585396_56585396	0.952706	Msx2_Hoxd4	ENSRNOT00000085316|Rdx|ENSRNOG00000012237|radixin [Source:RGD Symbol%3BAcc:1359472]	ENSRNOT00000034924|Rdx|ENSRNOG00000012237|radixin [Source:RGD Symbol%3BAcc:1359472]
rn6_v1_chr10_-_87232723_87232723	0.897068	Msx2_Hoxd4	ENSRNOT00000015150|Krt25|ENSRNOG00000011196|keratin 25 [Source:RGD Symbol%3BAcc:1359097]
rn6_v1_chr6_-_94834908_94834908	0.848465	Msx2_Hoxd4	ENSRNOT00000006284|L3hypdh|ENSRNOG00000004503|trans-L-3-hydroxyproline dehydratase [Source:RGD Symbol%3BAcc:1305721]
rn6_v1_chr2_+_196013799_196013799	0.846789	Msx2_Hoxd4	ENSRNOT00000084023|Pogz|ENSRNOG00000053599|pogo transposable element with ZNF domain [Source:RGD Symbol%3BAcc:1309980]
rn6_v1_chr2_+_72006099_72006099	0.840673	Msx2_Hoxd4	ENSRNOT00000034044|Cdh12|ENSRNOG00000026392|cadherin 12 [Source:RGD Symbol%3BAcc:1566350]
rn6_v1_chr16_-_24951612_24951612	0.795993	Msx2_Hoxd4	ENSRNOT00000018987|Tktl2|ENSRNOG00000014185|transketolase-like 2 [Source:RGD Symbol%3BAcc:1304767]
rn6_v1_chr4_-_157304653_157304653	0.770268	Msx2_Hoxd4	ENSRNOT00000051613|Lrrc23|ENSRNOG00000026309|leucine rich repeat containing 23 [Source:RGD Symbol%3BAcc:1304779]
rn6_v1_chr19_-_22194740_22194740	0.761279	Msx2_Hoxd4	ENSRNOT00000086187|Phkb|ENSRNOG00000024101|phosphorylase kinase regulatory subunit beta [Source:RGD Symbol%3BAcc:620186]
rn6_v1_chr2_-_185005572_185005572	0.692306	Msx2_Hoxd4	ENSRNOT00000093291|Fam160a1|ENSRNOG00000048256|family with sequence similarity 160%2C member A1 [Source:RGD Symbol%3BAcc:1565007]
rn6_v1_chr2_+_154604832_154604832	0.637084	Msx2_Hoxd4	ENSRNOT00000013777|Vom2r44|ENSRNOG00000010268|vomeronasal 2 receptor 44 [Source:RGD Symbol%3BAcc:708515]
rn6_v1_chr8_+_43705216_43705216	0.620886	Msx2_Hoxd4	ENSRNOT00000090425|AC115384.1|ENSRNOG00000058613|
rn6_v1_chr4_-_78879294_78879294	0.587871	Msx2_Hoxd4	ENSRNOT00000084543|Igf2bp3|ENSRNOG00000009052|insulin-like growth factor 2 mRNA binding protein 3 [Source:RGD Symbol%3BAcc:1306512]
rn6_v1_chrX_-_106607352_106607352	0.577836	Msx2_Hoxd4	ENSRNOT00000082858|AABR07040624.1|ENSRNOG00000058183|
rn6_v1_chr1_+_150310319_150310319	0.552871	Msx2_Hoxd4	ENSRNOT00000042081|Olr34|ENSRNOG00000030554|olfactory receptor 34 [Source:RGD Symbol%3BAcc:1333763]
rn6_v1_chr6_+_101532518_101532518	0.471318	Msx2_Hoxd4	ENSRNOT00000075054|Gphn|ENSRNOG00000028366|gephyrin [Source:RGD Symbol%3BAcc:69194]
rn6_v1_chr8_+_43747548_43747548	0.45407	Msx2_Hoxd4	ENSRNOT00000092067|Olr1327|ENSRNOG00000052227|olfactory receptor 1327 [Source:RGD Symbol%3BAcc:1333701]
rn6_v1_chr19_+_25043680_25043680	0.43749	Msx2_Hoxd4	ENSRNOT00000043971|Adgrl1|ENSRNOG00000029134|adhesion G protein-coupled receptor L1 [Source:RGD Symbol%3BAcc:620768]
rn6_v1_chr19_+_43163129_43163129	0.435266	Msx2_Hoxd4	ENSRNOT00000073721|Clec18a|ENSRNOG00000022721|C-type lectin domain family 18%2C member A [Source:RGD Symbol%3BAcc:1559899]
rn6_v1_chr13_+_90533365_90533365	0.425032	Msx2_Hoxd4	ENSRNOT00000082469|Dcaf8|ENSRNOG00000006785|DDB1 and CUL4 associated factor 8 [Source:RGD Symbol%3BAcc:1308513]
rn6_v1_chr1_+_279633671_279633727	0.354846	Msx2_Hoxd4	ENSRNOT00000036012|Ccdc172|ENSRNOG00000017656|coiled-coil domain containing 172 [Source:RGD Symbol%3BAcc:1359412]	ENSRNOT00000091669|Ccdc172|ENSRNOG00000017656|coiled-coil domain containing 172 [Source:RGD Symbol%3BAcc:1359412]
rn6_v1_chr13_-_32427177_32427177	0.347537	Msx2_Hoxd4	ENSRNOT00000044628|Cdh19|ENSRNOG00000029841|cadherin 19 [Source:RGD Symbol%3BAcc:1307169]
rn6_v1_chr2_-_33025271_33025271	0.346367	Msx2_Hoxd4	ENSRNOT00000074941|NEWGENE_1310139|ENSRNOG00000027002|microtubule associated serine/threonine kinase family member 4 [Source:RGD Symbol%3BAcc:9344213]
rn6_v1_chr6_-_99214251_99214251	0.343111	Msx2_Hoxd4	ENSRNOT00000042682|Esr2|ENSRNOG00000005343|estrogen receptor 2 [Source:RGD Symbol%3BAcc:2582]
rn6_v1_chr4_-_129619142_129619142	0.317171	Msx2_Hoxd4	ENSRNOT00000047453|Lmod3|ENSRNOG00000032443|leiomodin 3 [Source:RGD Symbol%3BAcc:1564924]
rn6_v1_chr1_+_169115981_169115981	0.254904	Msx2_Hoxd4	ENSRNOT00000067478|Olr135|ENSRNOG00000043392|olfactory receptor 135 [Source:RGD Symbol%3BAcc:1334260]
rn6_v1_chr7_+_122818975_122818975	0.220661	Msx2_Hoxd4	ENSRNOT00000000206|Ep300|ENSRNOG00000000190|E1A binding protein p300 [Source:RGD Symbol%3BAcc:620036]
rn6_v1_chr1_+_79474809_79474809	0.169527	Msx2_Hoxd4	ENSRNOT00000044927|Ceacam12|ENSRNOG00000042158|carcinoembryonic antigen-related cell adhesion molecule 12 [Source:RGD Symbol%3BAcc:1306754]
rn6_v1_chr1_+_168390615_168390615	0.131295	Msx2_Hoxd4	ENSRNOT00000039822|Olr87|ENSRNOG00000021290|olfactory receptor 87 [Source:RGD Symbol%3BAcc:1332971]
rn6_v1_chr17_+_45670284_45670284	0.125166	Msx2_Hoxd4	ENSRNOT00000086536|Olr1660|ENSRNOG00000057176|olfactory receptor 1660 [Source:RGD Symbol%3BAcc:1333109]
rn6_v1_chr6_-_146902339_146902339	0.115654	Msx2_Hoxd4	ENSRNOT00000050893|Abcb5|ENSRNOG00000006398|ATP binding cassette subfamily B member 5 [Source:RGD Symbol%3BAcc:1566342]
rn6_v1_chr3_-_74014795_74014795	0.105237	Msx2_Hoxd4	ENSRNOT00000073426|Olr516|ENSRNOG00000049954|olfactory receptor 516 [Source:RGD Symbol%3BAcc:1333823]
rn6_v1_chr7_-_143408276_143408277	0.0915945	Msx2_Hoxd4	ENSRNOT00000013122|Krt73|ENSRNOG00000025087|keratin 73 [Source:RGD Symbol%3BAcc:1359597]	ENSRNOT00000091540|Krt73|ENSRNOG00000025087|keratin 73 [Source:RGD Symbol%3BAcc:1359597]
rn6_v1_chr19_+_32308236_32308236	0.0893418	Msx2_Hoxd4	ENSRNOT00000015508|Mmaa|ENSRNOG00000011618|methylmalonic aciduria (cobalamin deficiency) cblA type [Source:RGD Symbol%3BAcc:1305035]
rn6_v1_chr4_+_8066737_8066737	0.0692019	Msx2_Hoxd4	ENSRNOT00000063994|Srpk2|ENSRNOG00000010601|SRSF protein kinase 2 [Source:RGD Symbol%3BAcc:1305107]
rn6_v1_chr1_-_56683731_56683731	0.00529692	Msx2_Hoxd4	ENSRNOT00000014552|Thbs2|ENSRNOG00000010529|thrombospondin 2 [Source:RGD Symbol%3BAcc:1310979]
