rn6_v1_chr17_-_69404323_69404341	12.0297	Msx3	ENSRNOT00000051342|Akr1c2|ENSRNOG00000029844|aldo-keto reductase family 1%2C member C2 [Source:RGD Symbol%3BAcc:1311841]	ENSRNOT00000066282|Akr1c2|ENSRNOG00000029844|aldo-keto reductase family 1%2C member C2 [Source:RGD Symbol%3BAcc:1311841]
rn6_v1_chr5_+_28485619_28485674	11.7282	Msx3	ENSRNOT00000093341|LOC100912373|ENSRNOG00000047537|uncharacterized LOC100912373 [Source:RGD Symbol%3BAcc:6487307]	ENSRNOT00000093129|LOC100912373|ENSRNOG00000047537|uncharacterized LOC100912373 [Source:RGD Symbol%3BAcc:6487307]
rn6_v1_chr8_+_48718329_48718329	10.9329	Msx3	ENSRNOT00000089763|Slc37a4|ENSRNOG00000011361|solute carrier family 37 member 4 [Source:RGD Symbol%3BAcc:62066]
rn6_v1_chr1_+_185863043_185863043	10.1409	Msx3	ENSRNOT00000079072|Sox6|ENSRNOG00000020514|SRY box 6 [Source:RGD Symbol%3BAcc:1309000]
rn6_v1_chr10_+_84135116_84135116	8.83131	Msx3	ENSRNOT00000031035|Hoxb7|ENSRNOG00000007611|homeo box B7 [Source:RGD Symbol%3BAcc:1559918]
rn6_v1_chr9_-_18371856_18371856	8.69353	Msx3	ENSRNOT00000027293|Supt3h|ENSRNOG00000020153|SPT3 homolog%2C SAGA and STAGA complex component [Source:RGD Symbol%3BAcc:1591316]
rn6_v1_chr6_-_42002819_42002819	8.50847	Msx3	ENSRNOT00000032417|Greb1|ENSRNOG00000024651|growth regulation by estrogen in breast cancer 1 [Source:RGD Symbol%3BAcc:1564091]
rn6_v1_chr8_-_119012671_119012671	8.37983	Msx3	ENSRNOT00000028435|Pth1r|ENSRNOG00000020948|parathyroid hormone 1 receptor [Source:RGD Symbol%3BAcc:3442]
rn6_v1_chr16_-_24951612_24951612	8.0156	Msx3	ENSRNOT00000018987|Tktl2|ENSRNOG00000014185|transketolase-like 2 [Source:RGD Symbol%3BAcc:1304767]
rn6_v1_chr3_-_165700489_165700489	7.73863	Msx3	ENSRNOT00000017008|Zfp93|ENSRNOG00000042101|zinc finger protein 93 [Source:RGD Symbol%3BAcc:1309760]
rn6_v1_chr13_-_111972603_111972603	7.62304	Msx3	ENSRNOT00000007870|Hsd11b1|ENSRNOG00000005861|hydroxysteroid 11-beta dehydrogenase 1 [Source:RGD Symbol%3BAcc:2834]
rn6_v1_chr3_-_165537940_165537940	7.4166	Msx3	ENSRNOT00000071119|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]	ENSRNOT00000070964|Sall4|ENSRNOG00000050035|spalt-like transcription factor 4 [Source:RGD Symbol%3BAcc:1597672]
rn6_v1_chr18_-_13183263_13183263	7.01864	Msx3	ENSRNOT00000050933|Ccdc178|ENSRNOG00000022156|coiled-coil domain containing 178 [Source:RGD Symbol%3BAcc:1308160]
rn6_v1_chrX_-_98095663_98095663	6.7664	Msx3	ENSRNOT00000004491|Rbm31y|ENSRNOG00000003377|RNA binding motif 31%2C Y-linked [Source:RGD Symbol%3BAcc:1562219]
rn6_v1_chr8_+_128027958_128027958	6.40238	Msx3	ENSRNOT00000045049|Acaa1b|ENSRNOG00000032908|acetyl-Coenzyme A acyltransferase 1B [Source:RGD Symbol%3BAcc:1562373]
rn6_v1_chr18_+_45023932_45023932	6.06735	Msx3	ENSRNOT00000039379|Fam170a|ENSRNOG00000015834|family with sequence similarity 170%2C member A [Source:RGD Symbol%3BAcc:1565393]
rn6_v1_chr1_+_101603222_101603222	5.49814	Msx3	ENSRNOT00000033278|Izumo1|ENSRNOG00000024678|izumo sperm-egg fusion 1 [Source:RGD Symbol%3BAcc:1565454]
rn6_v1_chr1_-_14117021_14117021	5.24347	Msx3	ENSRNOT00000004344|RGD1560303|ENSRNOG00000025799|similar to hypothetical protein 4933423E17 [Source:RGD Symbol%3BAcc:1560303]
rn6_v1_chr4_-_178168690_178168690	5.13116	Msx3	ENSRNOT00000020729|Sox5|ENSRNOG00000027869|SRY box 5 [Source:RGD Symbol%3BAcc:620471]
rn6_v1_chr4_+_147832136_147832136	4.99347	Msx3	ENSRNOT00000064603|Rho|ENSRNOG00000011144|rhodopsin [Source:RGD Symbol%3BAcc:3573]
rn6_v1_chr6_-_86223052_86223052	4.83959	Msx3	ENSRNOT00000046828|Fscb|ENSRNOG00000032241|fibrous sheath CABYR binding protein [Source:RGD Symbol%3BAcc:1561721]
rn6_v1_chr7_-_143167772_143167772	4.43652	Msx3	ENSRNOT00000011374|Krt85|ENSRNOG00000008436|keratin 85 [Source:RGD Symbol%3BAcc:1303149]
rn6_v1_chr9_+_60900213_60900213	4.38023	Msx3	ENSRNOT00000017859|Ccdc150|ENSRNOG00000013318|coiled-coil domain containing 150 [Source:RGD Symbol%3BAcc:1304775]
rn6_v1_chr20_+_32717564_32717564	4.22108	Msx3	ENSRNOT00000030642|Rfx6|ENSRNOG00000027949|regulatory factor X%2C 6 [Source:RGD Symbol%3BAcc:1307491]
rn6_v1_chr18_+_12056113_12056113	3.80115	Msx3	ENSRNOT00000038450|Dsg4|ENSRNOG00000022364|desmoglein 4 [Source:RGD Symbol%3BAcc:735015]
rn6_v1_chr14_+_23405717_23405717	3.69041	Msx3	ENSRNOT00000029805|Tmprss11c|ENSRNOG00000033910|transmembrane protease%2C serine 11C [Source:RGD Symbol%3BAcc:1302967]
rn6_v1_chr4_-_176606382_176606382	3.48795	Msx3	ENSRNOT00000065576|Recql|ENSRNOG00000012602|RecQ like helicase [Source:RGD Symbol%3BAcc:1311071]
rn6_v1_chr7_+_143122269_143122341	3.42869	Msx3	ENSRNOT00000082542|Krt86|ENSRNOG00000008367|keratin 86 [Source:RGD Symbol%3BAcc:1303215]	ENSRNOT00000045495|Krt86|ENSRNOG00000008367|keratin 86 [Source:RGD Symbol%3BAcc:1303215]	ENSRNOT00000081386|Krt86|ENSRNOG00000008367|keratin 86 [Source:RGD Symbol%3BAcc:1303215]	ENSRNOT00000067422|Krt86|ENSRNOG00000008367|keratin 86 [Source:RGD Symbol%3BAcc:1303215]
rn6_v1_chr16_+_2634603_2634603	3.07221	Msx3	ENSRNOT00000019113|Hesx1|ENSRNOG00000014133|HESX homeobox 1 [Source:RGD Symbol%3BAcc:1563858]
rn6_v1_chr3_+_112346627_112346627	2.92748	Msx3	ENSRNOT00000074392|Snap23|ENSRNOG00000050552|synaptosomal-associated protein 23 [Source:MGI Symbol%3BAcc:MGI:109356]
rn6_v1_chr2_+_220432037_220432037	2.89241	Msx3	ENSRNOT00000021988|Frrs1|ENSRNOG00000016351|ferric-chelate reductase 1 [Source:RGD Symbol%3BAcc:1306883]
rn6_v1_chr15_+_39779648_39779648	2.86126	Msx3	ENSRNOT00000084505|Cab39l|ENSRNOG00000011603|calcium binding protein 39-like [Source:RGD Symbol%3BAcc:1308945]
rn6_v1_chrX_+_110789269_110789269	2.85493	Msx3	ENSRNOT00000086014|Rnf128|ENSRNOG00000055721|ring finger protein 128%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:1566282]
rn6_v1_chr20_+_44680449_44680449	2.82484	Msx3	ENSRNOT00000000728|Traf3ip2|ENSRNOG00000000595|Traf3 interacting protein 2 [Source:RGD Symbol%3BAcc:1593240]
rn6_v1_chr6_+_8886591_8886730	2.68895	Msx3	ENSRNOT00000091510|Six3|ENSRNOG00000057031|SIX homeobox 3 [Source:RGD Symbol%3BAcc:620909]	ENSRNOT00000089174|Six3|ENSRNOG00000057031|SIX homeobox 3 [Source:RGD Symbol%3BAcc:620909]
rn6_v1_chr12_-_45801842_45801842	2.36082	Msx3	ENSRNOT00000078837|AABR07036513.1|ENSRNOG00000059134|
rn6_v1_chr12_-_22138382_22138382	2.32703	Msx3	ENSRNOT00000001899|Lrch4|ENSRNOG00000001402|leucine rich repeats and calponin homology domain containing 4 [Source:RGD Symbol%3BAcc:1306145]
rn6_v1_chr16_-_75241303_75241303	2.31122	Msx3	ENSRNOT00000058056|Defb2|ENSRNOG00000038147|defensin beta 2 [Source:RGD Symbol%3BAcc:1566125]
rn6_v1_chr2_-_158156444_158156444	2.3007	Msx3	ENSRNOT00000088559|Veph1|ENSRNOG00000012427|ventricular zone expressed PH domain-containing 1 [Source:RGD Symbol%3BAcc:1308217]
rn6_v1_chr2_+_248398917_248398917	2.29692	Msx3	ENSRNOT00000045855|Gbp1|ENSRNOG00000023943|guanylate binding protein 1 [Source:RGD Symbol%3BAcc:1311877]
rn6_v1_chr1_+_217459215_217459321	2.26684	Msx3	ENSRNOT00000092386|Shank2|ENSRNOG00000050206|SH3 and multiple ankyrin repeat domains 2 [Source:RGD Symbol%3BAcc:628772]	ENSRNOT00000092357|Shank2|ENSRNOG00000050206|SH3 and multiple ankyrin repeat domains 2 [Source:RGD Symbol%3BAcc:628772]
rn6_v1_chr10_-_87286387_87286387	2.23912	Msx3	ENSRNOT00000044206|Krt28|ENSRNOG00000011846|keratin 28 [Source:RGD Symbol%3BAcc:1309530]
rn6_v1_chrM_+_9870_9870	2.14771	Msx3	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chr3_+_161160920_161160920	2.14633	Msx3	ENSRNOT00000019849|Spint4|ENSRNOG00000014794|serine protease inhibitor%2C Kunitz type 4 [Source:MGI Symbol%3BAcc:MGI:1925489]
rn6_v1_chr7_-_73130740_73130740	2.13335	Msx3	ENSRNOT00000075584|9430069I07Rik|ENSRNOG00000046924|RIKEN cDNA 9430069I07 gene [Source:MGI Symbol%3BAcc:MGI:1924608]
rn6_v1_chr7_-_15706893_15706893	2.10982	Msx3	ENSRNOT00000042742|Olr1092|ENSRNOG00000046735|olfactory receptor 1092 [Source:RGD Symbol%3BAcc:1332867]
rn6_v1_chr5_-_115387377_115387413	2.09042	Msx3	ENSRNOT00000036030|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]	ENSRNOT00000077492|RGD1560146|ENSRNOG00000026169|similar to hypothetical protein MGC34837 [Source:RGD Symbol%3BAcc:1560146]
rn6_v1_chr5_+_6373583_6373583	2.08651	Msx3	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chr7_-_143967484_143967484	1.72269	Msx3	ENSRNOT00000081758|Sp7|ENSRNOG00000014082|Sp7 transcription factor [Source:RGD Symbol%3BAcc:631377]
rn6_v1_chr1_-_172076138_172076138	1.70995	Msx3	ENSRNOT00000051241|Olr239|ENSRNOG00000030863|olfactory receptor 239 [Source:RGD Symbol%3BAcc:1334219]
rn6_v1_chrM_+_9451_9451	1.69855	Msx3	ENSRNOT00000041241|Mt-nd3|ENSRNOG00000033615|mitochondrially encoded NADH dehydrogenase 3 [Source:RGD Symbol%3BAcc:620557]
rn6_v1_chr3_-_10196626_10196626	1.65867	Msx3	ENSRNOT00000012234|Prdm12|ENSRNOG00000009218|PR/SET domain 12 [Source:RGD Symbol%3BAcc:1586401]
rn6_v1_chr6_-_36876805_36876805	1.59986	Msx3	ENSRNOT00000006482|Msgn1|ENSRNOG00000028518|mesogenin 1 [Source:RGD Symbol%3BAcc:1587516]
rn6_v1_chr10_-_87195075_87195075	1.58374	Msx3	ENSRNOT00000014851|Krt24|ENSRNOG00000010970|keratin 24 [Source:RGD Symbol%3BAcc:1303157]
rn6_v1_chr3_-_77800137_77800137	1.52154	Msx3	ENSRNOT00000071319|AABR07052831.1|ENSRNOG00000046674|
rn6_v1_chr6_-_50618694_50618694	1.51203	Msx3	ENSRNOT00000008980|Dld|ENSRNOG00000006364|dihydrolipoamide dehydrogenase [Source:RGD Symbol%3BAcc:735073]
rn6_v1_chr15_-_36798814_36798814	1.48766	Msx3	ENSRNOT00000065764|Cenpj|ENSRNOG00000022597|centromere protein J [Source:RGD Symbol%3BAcc:1310464]
rn6_v1_chr10_-_88000423_88000534	1.39916	Msx3	ENSRNOT00000076787|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000046751|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]	ENSRNOT00000091394|Krt32|ENSRNOG00000013611|keratin 32 [Source:RGD Symbol%3BAcc:1359701]
rn6_v1_chr1_-_8885967_8885967	1.35246	Msx3	ENSRNOT00000016102|Gje1|ENSRNOG00000012092|gap junction protein%2C epsilon 1 [Source:RGD Symbol%3BAcc:1598009]
rn6_v1_chr2_-_192812008_192812008	1.2943	Msx3	ENSRNOT00000080554|Lce6a|ENSRNOG00000055370|late cornified envelope 6A [Source:RGD Symbol%3BAcc:2319721]
rn6_v1_chr9_-_24467892_24467892	1.28906	Msx3	ENSRNOT00000060803|Defb18|ENSRNOG00000039650|defensin beta 18 [Source:RGD Symbol%3BAcc:1559758]
rn6_v1_chr6_-_111417813_111417954	1.10079	Msx3	ENSRNOT00000016324|Sptlc2|ENSRNOG00000012210|serine palmitoyltransferase%2C long chain base subunit 2 [Source:RGD Symbol%3BAcc:1305447]	ENSRNOT00000085458|Sptlc2|ENSRNOG00000012210|serine palmitoyltransferase%2C long chain base subunit 2 [Source:RGD Symbol%3BAcc:1305447]
rn6_v1_chr5_-_56567320_56567320	1.08321	Msx3	ENSRNOT00000066081|Topors|ENSRNOG00000006485|TOP1 binding arginine/serine rich protein [Source:RGD Symbol%3BAcc:1305270]
rn6_v1_chr8_+_115546893_115546893	1.02072	Msx3	ENSRNOT00000018932|Dcaf1|ENSRNOG00000013841|DDB1 and CUL4 associated factor 1 [Source:RGD Symbol%3BAcc:1305176]
rn6_v1_chr13_-_101667147_101667147	0.899738	Msx3	ENSRNOT00000080475|AABR07021987.1|ENSRNOG00000058348|
rn6_v1_chr10_+_82032656_82032656	0.864055	Msx3	ENSRNOT00000067751|Ankrd40|ENSRNOG00000002935|ankyrin repeat domain 40 [Source:RGD Symbol%3BAcc:1594678]
rn6_v1_chrX_-_70835089_70835089	0.763536	Msx3	ENSRNOT00000076351|Tex11|ENSRNOG00000025672|testis expressed 11 [Source:RGD Symbol%3BAcc:1560239]
rn6_v1_chr1_-_167971151_167971151	0.748675	Msx3	ENSRNOT00000043023|Olr53|ENSRNOG00000031110|olfactory receptor 53 [Source:RGD Symbol%3BAcc:1333228]
rn6_v1_chr8_+_79638696_79638696	0.738504	Msx3	ENSRNOT00000085959|Dyx1c1|ENSRNOG00000056654|dyslexia susceptibility 1 candidate 1 [Source:RGD Symbol%3BAcc:1549760]
rn6_v1_chr2_+_195996521_195996521	0.707209	Msx3	ENSRNOT00000082849|Pogz|ENSRNOG00000053599|pogo transposable element with ZNF domain [Source:RGD Symbol%3BAcc:1309980]
rn6_v1_chr11_-_28979169_28979169	0.649767	Msx3	ENSRNOT00000061601|AABR07033580.1|ENSRNOG00000040060|
rn6_v1_chr12_+_18679789_18679789	0.636881	Msx3	ENSRNOT00000001863|Cyp3a9|ENSRNOG00000001379|cytochrome P450%2C family 3%2C subfamily a%2C polypeptide 9 [Source:RGD Symbol%3BAcc:708392]
rn6_v1_chr16_-_16762240_16762240	0.614216	Msx3	ENSRNOT00000080746|AABR07024790.1|ENSRNOG00000051423|
rn6_v1_chr16_-_75028977_75028977	0.603012	Msx3	ENSRNOT00000058071|Defb13|ENSRNOG00000038157|defensin beta 13 [Source:RGD Symbol%3BAcc:1559883]
rn6_v1_chr1_-_168930776_168930776	0.589275	Msx3	ENSRNOT00000021468|LOC103694854|ENSRNOG00000016052|olfactory receptor 52Z1-like [Source:RGD Symbol%3BAcc:9119569]
rn6_v1_chr18_-_43945273_43945273	0.497702	Msx3	ENSRNOT00000088900|Dtwd2|ENSRNOG00000059142|DTW domain containing 2 [Source:RGD Symbol%3BAcc:1306423]
rn6_v1_chrY_-_1305026_1305026	0.494785	Msx3	ENSRNOT00000092901|Usp9y|ENSRNOG00000058664|ubiquitin specific peptidase 9%2C Y-linked [Source:RGD Symbol%3BAcc:9087771]
rn6_v1_chr1_+_229889771_229889771	0.437022	Msx3	ENSRNOT00000085941|Olr348|ENSRNOG00000058503|olfactory receptor 348 [Source:RGD Symbol%3BAcc:1333475]
rn6_v1_chr1_-_149529350_149529350	0.348493	Msx3	ENSRNOT00000052226|Vom2r43|ENSRNOG00000013563|vomeronasal 2 receptor%2C 43 [Source:RGD Symbol%3BAcc:1587090]
rn6_v1_chr11_-_71136673_71136673	0.344722	Msx3	ENSRNOT00000042240|Fyttd1|ENSRNOG00000034233|forty-two-three domain containing 1 [Source:RGD Symbol%3BAcc:1306899]
rn6_v1_chrX_-_120521871_120521871	0.331497	Msx3	ENSRNOT00000080863|LOC100362376|ENSRNOG00000061620|LRRGT00025-like [Source:RGD Symbol%3BAcc:2324557]
rn6_v1_chr1_-_101095594_101095594	0.318691	Msx3	ENSRNOT00000027944|Fcgrt|ENSRNOG00000020583|Fc fragment of IgG receptor and transporter [Source:RGD Symbol%3BAcc:61811]
rn6_v1_chr10_+_53740841_53740841	0.290593	Msx3	ENSRNOT00000004295|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr8_-_39551700_39551700	0.24663	Msx3	ENSRNOT00000091894|Pknox2|ENSRNOG00000028856|PBX/knotted 1 homeobox 2 [Source:RGD Symbol%3BAcc:1590611]	ENSRNOT00000076025|Pknox2|ENSRNOG00000028856|PBX/knotted 1 homeobox 2 [Source:RGD Symbol%3BAcc:1590611]
rn6_v1_chr4_-_66955732_66955732	0.239124	Msx3	ENSRNOT00000084282|Kdm7a|ENSRNOG00000052445|lysine (K)-specific demethylase 7A [Source:MGI Symbol%3BAcc:MGI:2443388]
rn6_v1_chr3_-_30930141_30930141	0.229431	Msx3	ENSRNOT00000037001|AABR07051982.1|ENSRNOG00000021999|
rn6_v1_chr4_+_88694583_88694583	0.183281	Msx3	ENSRNOT00000009202|Ppm1k|ENSRNOG00000006893|protein phosphatase%2C Mg2+/Mn2+ dependent%2C 1K [Source:RGD Symbol%3BAcc:1308501]
rn6_v1_chr8_+_43722228_43722228	0.162787	Msx3	ENSRNOT00000084016|Olr1325|ENSRNOG00000061476|olfactory receptor 1325 [Source:RGD Symbol%3BAcc:1332881]
rn6_v1_chr1_-_57518458_57518458	0.00988574	Msx3	ENSRNOT00000002040|Pdcd2|ENSRNOG00000001490|programmed cell death 2 [Source:RGD Symbol%3BAcc:61887]
