rn6_v1_chr4_-_179307095_179307095	30.635	Pax1_Pax9	ENSRNOT00000021193|Bcat1|ENSRNOG00000015514|branched chain amino acid transaminase 1 [Source:RGD Symbol%3BAcc:2195]
rn6_v1_chr2_+_220298245_220298245	20.2093	Pax1_Pax9	ENSRNOT00000022625|Plppr4|ENSRNOG00000016872|phospholipid phosphatase related 4 [Source:RGD Symbol%3BAcc:727806]
rn6_v1_chrX_+_118084890_118084890	19.1862	Pax1_Pax9	ENSRNOT00000065293|Htr2c|ENSRNOG00000030877|5-hydroxytryptamine receptor 2C [Source:RGD Symbol%3BAcc:2848]
rn6_v1_chr4_+_79557854_79557854	13.5866	Pax1_Pax9	ENSRNOT00000013145|Npy|ENSRNOG00000009768|neuropeptide Y [Source:RGD Symbol%3BAcc:3197]
rn6_v1_chr20_+_13778178_13778178	13.1178	Pax1_Pax9	ENSRNOT00000058314|Gstt4|ENSRNOG00000038300|glutathione S-transferase%2C theta 4 [Source:RGD Symbol%3BAcc:1591294]
rn6_v1_chr4_+_79573998_79573998	13.0755	Pax1_Pax9	ENSRNOT00000074351|LOC100912228|ENSRNOG00000046449|pro-neuropeptide Y-like [Source:RGD Symbol%3BAcc:6487865]
rn6_v1_chr18_-_1946840_1946840	11.7679	Pax1_Pax9	ENSRNOT00000041878|Abhd3|ENSRNOG00000029370|abhydrolase domain containing 3 [Source:RGD Symbol%3BAcc:1310655]
rn6_v1_chr3_+_128828331_128828331	10.7128	Pax1_Pax9	ENSRNOT00000045393|Plcb4|ENSRNOG00000033119|phospholipase C%2C beta 4 [Source:RGD Symbol%3BAcc:3345]
rn6_v1_chr15_+_67092304_67092304	10.5724	Pax1_Pax9	ENSRNOT00000040244|AABR07018646.1|ENSRNOG00000033366|
rn6_v1_chr1_-_18511695_18511695	10.2888	Pax1_Pax9	ENSRNOT00000075402|AABR07000583.1|ENSRNOG00000046438|
rn6_v1_chr8_+_70603249_70603249	9.79976	Pax1_Pax9	ENSRNOT00000067016|Igdcc4|ENSRNOG00000033496|immunoglobulin superfamily%2C DCC subclass%2C member 4 [Source:RGD Symbol%3BAcc:1310919]	ENSRNOT00000072486|Igdcc4|ENSRNOG00000033496|immunoglobulin superfamily%2C DCC subclass%2C member 4 [Source:RGD Symbol%3BAcc:1310919]
rn6_v1_chr1_-_220502272_220502272	8.95785	Pax1_Pax9	ENSRNOT00000041238|Klc2|ENSRNOG00000020299|kinesin light chain 2 [Source:RGD Symbol%3BAcc:1307377]
rn6_v1_chr1_-_178196294_178196294	8.88164	Pax1_Pax9	ENSRNOT00000067170|Btbd10|ENSRNOG00000014341|BTB domain containing 10 [Source:RGD Symbol%3BAcc:1306301]
rn6_v1_chr5_-_57896475_57896475	7.84503	Pax1_Pax9	ENSRNOT00000017903|RGD1561916|ENSRNOG00000013320|similar to testes development-related NYD-SP22 isoform 1 [Source:RGD Symbol%3BAcc:1561916]
rn6_v1_chr12_+_7208850_7208850	6.94319	Pax1_Pax9	ENSRNOT00000001219|Katnal1|ENSRNOG00000000916|katanin catalytic subunit A1 like 1 [Source:RGD Symbol%3BAcc:1359252]
rn6_v1_chr5_-_39689824_39689824	6.81587	Pax1_Pax9	ENSRNOT00000046713|AABR07047606.1|ENSRNOG00000032999|
rn6_v1_chr20_+_7484550_7484550	6.73533	Pax1_Pax9	ENSRNOT00000044395|Anks1a|ENSRNOG00000000498|ankyrin repeat and sterile alpha motif domain containing 1A [Source:RGD Symbol%3BAcc:1309183]
rn6_v1_chr1_+_18353812_18353812	6.73031	Pax1_Pax9	ENSRNOT00000029394|AABR07000581.1|ENSRNOG00000028519|
rn6_v1_chr1_-_19522171_19522171	6.67435	Pax1_Pax9	ENSRNOT00000045386|AABR07000595.1|ENSRNOG00000030796|
rn6_v1_chr4_+_174692331_174692331	6.51996	Pax1_Pax9	ENSRNOT00000011770|Plekha5|ENSRNOG00000008747|pleckstrin homology domain containing A5 [Source:RGD Symbol%3BAcc:621175]
rn6_v1_chr3_-_15433252_15433252	5.48433	Pax1_Pax9	ENSRNOT00000008817|Lhx6|ENSRNOG00000005996|LIM homeobox 6 [Source:RGD Symbol%3BAcc:1306174]
rn6_v1_chr9_-_65737538_65737538	4.80982	Pax1_Pax9	ENSRNOT00000014939|Trak2|ENSRNOG00000010881|trafficking kinesin protein 2 [Source:RGD Symbol%3BAcc:620915]
rn6_v1_chr20_+_7484800_7484800	4.02174	Pax1_Pax9	ENSRNOT00000081604|Anks1a|ENSRNOG00000000498|ankyrin repeat and sterile alpha motif domain containing 1A [Source:RGD Symbol%3BAcc:1309183]
rn6_v1_chr16_-_24788740_24788740	3.95757	Pax1_Pax9	ENSRNOT00000018952|Npy1r|ENSRNOG00000014149|neuropeptide Y receptor Y1 [Source:RGD Symbol%3BAcc:3198]
rn6_v1_chr6_+_26390689_26390764	3.76603	Pax1_Pax9	ENSRNOT00000079762|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]	ENSRNOT00000091528|Ift172|ENSRNOG00000057813|intraflagellar transport 172 [Source:RGD Symbol%3BAcc:620744]
rn6_v1_chr11_+_43329700_43329700	3.47448	Pax1_Pax9	ENSRNOT00000060892|Olr1540|ENSRNOG00000049405|olfactory receptor 1540 [Source:RGD Symbol%3BAcc:1332608]
rn6_v1_chr1_+_198682230_198682230	3.14618	Pax1_Pax9	ENSRNOT00000023995|Znf48|ENSRNOG00000017837|zinc finger protein 48 [Source:RGD Symbol%3BAcc:9115869]
rn6_v1_chr8_+_126411829_126411829	3.00344	Pax1_Pax9	ENSRNOT00000013450|Azi2|ENSRNOG00000010096|5-azacytidine induced 2 [Source:RGD Symbol%3BAcc:1310530]
rn6_v1_chrX_-_157172068_157172068	2.84623	Pax1_Pax9	ENSRNOT00000087962|Dusp9|ENSRNOG00000055185|dual specificity phosphatase 9 [Source:RGD Symbol%3BAcc:1565535]
rn6_v1_chr2_+_124150224_124150224	2.58351	Pax1_Pax9	ENSRNOT00000078650|Spata5|ENSRNOG00000017462|spermatogenesis associated 5 [Source:RGD Symbol%3BAcc:1310478]
rn6_v1_chr5_-_50068706_50068706	2.49521	Pax1_Pax9	ENSRNOT00000084643|Orc3|ENSRNOG00000008314|origin recognition complex%2C subunit 3 [Source:RGD Symbol%3BAcc:1308457]
rn6_v1_chr1_-_165997751_165997751	2.38228	Pax1_Pax9	ENSRNOT00000050227|P2ry6|ENSRNOG00000019270|pyrimidinergic receptor P2Y6 [Source:RGD Symbol%3BAcc:620269]
rn6_v1_chrX_-_83788325_83788325	2.22636	Pax1_Pax9	ENSRNOT00000037149|Satl1|ENSRNOG00000022476|spermidine/spermine N1-acetyl transferase-like 1 [Source:RGD Symbol%3BAcc:1565932]
rn6_v1_chr16_-_24788456_24788456	1.87643	Pax1_Pax9	ENSRNOT00000079412|Npy1r|ENSRNOG00000014149|neuropeptide Y receptor Y1 [Source:RGD Symbol%3BAcc:3198]
rn6_v1_chr12_+_37709860_37709860	1.30295	Pax1_Pax9	ENSRNOT00000086244|Mphosph9|ENSRNOG00000001074|M-phase phosphoprotein 9 [Source:RGD Symbol%3BAcc:1598368]
rn6_v1_chr17_-_79676499_79676499	1.0524	Pax1_Pax9	ENSRNOT00000022711|Itga8|ENSRNOG00000016538|integrin subunit alpha 8 [Source:RGD Symbol%3BAcc:621634]
rn6_v1_chr3_+_2490518_2490518	1.03724	Pax1_Pax9	ENSRNOT00000015099|Anapc2|ENSRNOG00000011295|anaphase promoting complex subunit 2 [Source:RGD Symbol%3BAcc:1305546]
rn6_v1_chr8_+_43355060_43355060	0.930195	Pax1_Pax9	ENSRNOT00000043206|Olr1309|ENSRNOG00000050335|olfactory receptor 1309 [Source:RGD Symbol%3BAcc:1332870]
rn6_v1_chr9_-_53732858_53732858	0.8805	Pax1_Pax9	ENSRNOT00000029204|Nemp2|ENSRNOG00000012924|nuclear envelope integral membrane protein 2 [Source:RGD Symbol%3BAcc:1560421]
rn6_v1_chr6_+_53401109_53401109	0.793786	Pax1_Pax9	ENSRNOT00000014763|Twist1|ENSRNOG00000011101|twist family bHLH transcription factor 1 [Source:RGD Symbol%3BAcc:621455]
rn6_v1_chr9_-_17880706_17880706	0.672525	Pax1_Pax9	ENSRNOT00000031549|Aars2|ENSRNOG00000025808|alanyl-tRNA synthetase 2%2C mitochondrial [Source:RGD Symbol%3BAcc:1310617]
rn6_v1_chr18_+_64114933_64114933	0.629348	Pax1_Pax9	ENSRNOT00000022364|Mc5r|ENSRNOG00000016685|melanocortin 5 receptor [Source:RGD Symbol%3BAcc:3058]
rn6_v1_chr6_+_135270871_135270871	0.484684	Pax1_Pax9	ENSRNOT00000051685|Zfp839|ENSRNOG00000031661|zinc finger protein 839 [Source:RGD Symbol%3BAcc:1562557]	ENSRNOT00000079048|Zfp839|ENSRNOG00000031661|zinc finger protein 839 [Source:RGD Symbol%3BAcc:1562557]
rn6_v1_chr3_+_147609095_147609095	0.324488	Pax1_Pax9	ENSRNOT00000041456|Srxn1|ENSRNOG00000031167|sulfiredoxin 1 [Source:RGD Symbol%3BAcc:1307332]
rn6_v1_chr7_+_2435553_2435553	0.191312	Pax1_Pax9	ENSRNOT00000065593|Prim1|ENSRNOG00000031993|primase (DNA) subunit 1 [Source:RGD Symbol%3BAcc:621380]
rn6_v1_chr3_+_2877293_2877293	0.147194	Pax1_Pax9	ENSRNOT00000061855|Lcn5|ENSRNOG00000058597|lipocalin 5 [Source:RGD Symbol%3BAcc:69320]
rn6_v1_chr9_-_100306194_100306194	0.136893	Pax1_Pax9	ENSRNOT00000087584|RGD1563692|ENSRNOG00000023557|similar to hypothetical protein FLJ22671 [Source:RGD Symbol%3BAcc:1563692]
rn6_v1_chr8_-_55276070_55276070	0.0428416	Pax1_Pax9	ENSRNOT00000041555|LOC108351703|ENSRNOG00000031736|60S ribosomal protein L27a-like [Source:RGD Symbol%3BAcc:11463616]
