rn6_v1_chrM_+_3904_3904	22.2524	Pax4	ENSRNOT00000040993|Mt-nd2|ENSRNOG00000031033|mitochondrially encoded NADH dehydrogenase 2 [Source:RGD Symbol%3BAcc:620556]
rn6_v1_chr11_-_81639872_81639952	18.9655	Pax4	ENSRNOT00000047595|Hrg|ENSRNOG00000001809|histidine-rich glycoprotein [Source:RGD Symbol%3BAcc:619808]	ENSRNOT00000090031|Hrg|ENSRNOG00000001809|histidine-rich glycoprotein [Source:RGD Symbol%3BAcc:619808]	ENSRNOT00000081864|Hrg|ENSRNOG00000001809|histidine-rich glycoprotein [Source:RGD Symbol%3BAcc:619808]
rn6_v1_chrM_+_9870_9870	16.8336	Pax4	ENSRNOT00000044582|Mt-nd4l|ENSRNOG00000031053|mitochondrially encoded NADH 4L dehydrogenase [Source:RGD Symbol%3BAcc:620494]
rn6_v1_chrM_+_10160_10160	15.6974	Pax4	ENSRNOT00000042928|Mt-nd4|ENSRNOG00000029707|mitochondrially encoded NADH dehydrogenase 4 [Source:RGD Symbol%3BAcc:620559]
rn6_v1_chr19_+_37476095_37476096	14.0773	Pax4	ENSRNOT00000092794|Hsd11b2|ENSRNOG00000017084|hydroxysteroid 11-beta dehydrogenase 2 [Source:RGD Symbol%3BAcc:2835]	ENSRNOT00000023130|Hsd11b2|ENSRNOG00000017084|hydroxysteroid 11-beta dehydrogenase 2 [Source:RGD Symbol%3BAcc:2835]
rn6_v1_chr3_-_51297852_51297852	13.2756	Pax4	ENSRNOT00000001607|Cobll1|ENSRNOG00000027016|cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol%3BAcc:1308954]
rn6_v1_chr1_-_248376750_248376750	12.7125	Pax4	ENSRNOT00000089073|Gldc|ENSRNOG00000011599|glycine decarboxylase [Source:RGD Symbol%3BAcc:1308660]
rn6_v1_chr5_+_6373583_6373583	12.1781	Pax4	ENSRNOT00000084749|AABR07046778.1|ENSRNOG00000058589|
rn6_v1_chrM_+_11736_11736	10.0529	Pax4	ENSRNOT00000048767|Mt-nd5|ENSRNOG00000029971|mitochondrially encoded NADH dehydrogenase 5 [Source:RGD Symbol%3BAcc:620560]
rn6_v1_chr1_+_105285419_105285419	8.60382	Pax4	ENSRNOT00000089693|Slc6a5|ENSRNOG00000031662|solute carrier family 6 member 5 [Source:RGD Symbol%3BAcc:621824]
rn6_v1_chr4_-_176720012_176720012	8.56846	Pax4	ENSRNOT00000017965|Ldhb|ENSRNOG00000013000|lactate dehydrogenase B [Source:RGD Symbol%3BAcc:2997]
rn6_v1_chr2_+_252452269_252452269	8.01763	Pax4	ENSRNOT00000021970|Uox|ENSRNOG00000016339|urate oxidase [Source:RGD Symbol%3BAcc:621369]
rn6_v1_chr3_-_170955399_170955399	7.7341	Pax4	ENSRNOT00000084990|Bmp7|ENSRNOG00000053384|bone morphogenetic protein 7 [Source:RGD Symbol%3BAcc:620743]
rn6_v1_chr15_+_43298794_43298794	7.47317	Pax4	ENSRNOT00000012736|Adra1a|ENSRNOG00000009522|adrenoceptor alpha 1A [Source:RGD Symbol%3BAcc:2055]
rn6_v1_chr8_+_87630916_87630916	6.575	Pax4	ENSRNOT00000016428|Myo6|ENSRNOG00000011852|myosin VI [Source:RGD Symbol%3BAcc:1560646]
rn6_v1_chr4_-_158704170_158704170	6.55192	Pax4	ENSRNOT00000082009|Ntf3|ENSRNOG00000019716|neurotrophin 3 [Source:RGD Symbol%3BAcc:619728]
rn6_v1_chr14_-_103321270_103321270	6.48287	Pax4	ENSRNOT00000006157|Meis1|ENSRNOG00000004606|Meis homeobox 1 [Source:RGD Symbol%3BAcc:1585482]
rn6_v1_chr3_+_114176309_114176309	6.43658	Pax4	ENSRNOT00000023350|Sord|ENSRNOG00000017291|sorbitol dehydrogenase [Source:RGD Symbol%3BAcc:3734]
rn6_v1_chr7_-_119689938_119689938	6.36335	Pax4	ENSRNOT00000000200|Tmprss6|ENSRNOG00000000184|transmembrane protease%2C serine 6 [Source:RGD Symbol%3BAcc:1307138]
rn6_v1_chr14_+_99919485_99919485	6.23873	Pax4	ENSRNOT00000006087|Egfr|ENSRNOG00000004332|epidermal growth factor receptor [Source:RGD Symbol%3BAcc:2543]
rn6_v1_chr1_-_188407132_188407132	5.90473	Pax4	ENSRNOT00000073233|Gde1|ENSRNOG00000050445|glycerophosphodiester phosphodiesterase 1 [Source:RGD Symbol%3BAcc:621788]
rn6_v1_chr6_-_103313074_103313074	5.55321	Pax4	ENSRNOT00000083677|Zfp36l1|ENSRNOG00000058646|zinc finger protein 36%2C C3H type-like 1 [Source:RGD Symbol%3BAcc:62009]
rn6_v1_chr13_-_80775230_80775264	5.41159	Pax4	ENSRNOT00000091389|Fmo2|ENSRNOG00000003510|flavin containing monooxygenase 2 [Source:RGD Symbol%3BAcc:628600]	ENSRNOT00000004762|Fmo2|ENSRNOG00000003510|flavin containing monooxygenase 2 [Source:RGD Symbol%3BAcc:628600]
rn6_v1_chr12_-_44999074_44999159	5.25482	Pax4	ENSRNOT00000079177|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]	ENSRNOT00000038293|Vsig10|ENSRNOG00000022698|V-set and immunoglobulin domain containing 10 [Source:RGD Symbol%3BAcc:1565800]
rn6_v1_chr8_-_54990604_54990604	5.20462	Pax4	ENSRNOT00000059192|Tex12|ENSRNOG00000038746|testis expressed 12 [Source:RGD Symbol%3BAcc:1597300]
rn6_v1_chr7_-_101140308_101140308	5.18746	Pax4	ENSRNOT00000006279|Fam84b|ENSRNOG00000004744|family with sequence similarity 84%2C member B [Source:MGI Symbol%3BAcc:MGI:3026924]
rn6_v1_chr1_-_164308317_164308317	5.08972	Pax4	ENSRNOT00000022983|Serpinh1|ENSRNOG00000016831|serpin family H member 1 [Source:RGD Symbol%3BAcc:69302]
rn6_v1_chr10_-_56558487_56558487	4.9715	Pax4	ENSRNOT00000023256|Slc2a4|ENSRNOG00000017226|solute carrier family 2 member 4 [Source:RGD Symbol%3BAcc:2711]
rn6_v1_chr7_+_97559841_97559841	4.43325	Pax4	ENSRNOT00000007326|Zhx2|ENSRNOG00000005417|zinc fingers and homeoboxes 2 [Source:RGD Symbol%3BAcc:727926]
rn6_v1_chrX_+_15035569_15035571	4.26279	Pax4	ENSRNOT00000006491|Porcn|ENSRNOG00000004819|porcupine homolog (Drosophila) [Source:RGD Symbol%3BAcc:1564947]	ENSRNOT00000078392|Porcn|ENSRNOG00000004819|porcupine homolog (Drosophila) [Source:RGD Symbol%3BAcc:1564947]
rn6_v1_chr18_-_71829881_71829881	4.10821	Pax4	ENSRNOT00000088662|Ctif|ENSRNOG00000018342|cap binding complex dependent translation initiation factor [Source:RGD Symbol%3BAcc:1311887]
rn6_v1_chr18_-_57245666_57245666	4.03652	Pax4	ENSRNOT00000080365|Ablim3|ENSRNOG00000019365|actin binding LIM protein family%2C member 3 [Source:RGD Symbol%3BAcc:1565118]
rn6_v1_chr16_-_62373253_62373253	3.98026	Pax4	ENSRNOT00000034325|Tex15|ENSRNOG00000007748|testis expressed 15%2C meiosis and synapsis associated [Source:RGD Symbol%3BAcc:1311266]
rn6_v1_chr20_+_5049496_5049505	3.81707	Pax4	ENSRNOT00000088251|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]	ENSRNOT00000001118|Ddah2|ENSRNOG00000000842|dimethylarginine dimethylaminohydrolase 2 [Source:RGD Symbol%3BAcc:1302955]
rn6_v1_chr7_+_37018459_37018459	3.64612	Pax4	ENSRNOT00000087297|Eea1|ENSRNOG00000021681|early endosome antigen 1 [Source:RGD Symbol%3BAcc:1310167]
rn6_v1_chr8_-_53901358_53901358	3.39823	Pax4	ENSRNOT00000047666|Ncam1|ENSRNOG00000031890|neural cell adhesion molecule 1 [Source:RGD Symbol%3BAcc:67378]	ENSRNOT00000042281|Ncam1|ENSRNOG00000031890|neural cell adhesion molecule 1 [Source:RGD Symbol%3BAcc:67378]
rn6_v1_chrX_+_105537602_105537602	3.31107	Pax4	ENSRNOT00000029833|Armcx1|ENSRNOG00000037709|armadillo repeat containing%2C X-linked 1 [Source:RGD Symbol%3BAcc:1561629]
rn6_v1_chr5_-_172307431_172307431	3.25901	Pax4	ENSRNOT00000018453|Fam213b|ENSRNOG00000013468|family with sequence similarity 213%2C member B [Source:RGD Symbol%3BAcc:1308251]
rn6_v1_chr3_-_113438801_113438801	3.1754	Pax4	ENSRNOT00000091665|Mfap1a|ENSRNOG00000014436|microfibrillar-associated protein 1A [Source:RGD Symbol%3BAcc:1562232]
rn6_v1_chrX_-_102510007_102510007	3.17446	Pax4	ENSRNOT00000082854|AABR07040494.1|ENSRNOG00000058719|
rn6_v1_chr20_-_3818045_3818045	2.74898	Pax4	ENSRNOT00000091622|Hsd17b8|ENSRNOG00000000466|hydroxysteroid (17-beta) dehydrogenase 8 [Source:RGD Symbol%3BAcc:1303158]
rn6_v1_chr11_-_57993548_57993548	2.65849	Pax4	ENSRNOT00000002957|Nectin3|ENSRNOG00000002176|nectin cell adhesion molecule 3 [Source:RGD Symbol%3BAcc:1309516]
rn6_v1_chr3_-_162579201_162579201	2.64358	Pax4	ENSRNOT00000068328|Zmynd8|ENSRNOG00000019154|zinc finger%2C MYND-type containing 8 [Source:RGD Symbol%3BAcc:1309544]
rn6_v1_chrX_+_16337102_16337102	2.54642	Pax4	ENSRNOT00000003954|Ccnb3|ENSRNOG00000002951|cyclin B3 [Source:RGD Symbol%3BAcc:1564367]
rn6_v1_chr10_-_25845634_25845634	2.49031	Pax4	ENSRNOT00000004269|Mat2b|ENSRNOG00000003177|methionine adenosyltransferase 2B [Source:RGD Symbol%3BAcc:1593534]
rn6_v1_chr1_+_80092403_80092403	2.29773	Pax4	ENSRNOT00000078336|Eml2|ENSRNOG00000030127|echinoderm microtubule associated protein like 2 [Source:RGD Symbol%3BAcc:621066]
rn6_v1_chr12_-_37411525_37411525	2.25659	Pax4	ENSRNOT00000087698|Tctn2|ENSRNOG00000052704|tectonic family member 2 [Source:RGD Symbol%3BAcc:1591895]
rn6_v1_chr1_+_252894663_252894663	2.15929	Pax4	ENSRNOT00000054757|Ifit2|ENSRNOG00000036604|interferon-induced protein with tetratricopeptide repeats 2 [Source:RGD Symbol%3BAcc:1307804]
rn6_v1_chr4_-_99810270_99810270	2.05675	Pax4	ENSRNOT00000078123|Ptcd3|ENSRNOG00000009484|Pentatricopeptide repeat domain 3 [Source:RGD Symbol%3BAcc:1565582]
rn6_v1_chr14_-_43143973_43143973	1.9953	Pax4	ENSRNOT00000003248|Uchl1|ENSRNOG00000002343|ubiquitin C-terminal hydrolase L1 [Source:RGD Symbol%3BAcc:3928]
rn6_v1_chr17_+_45801528_45801528	1.76481	Pax4	ENSRNOT00000089221|Olr1664|ENSRNOG00000052917|olfactory receptor 1664 [Source:RGD Symbol%3BAcc:1332759]
rn6_v1_chr17_-_27969433_27969433	1.75538	Pax4	ENSRNOT00000073967|Nrn1|ENSRNOG00000050767|neuritin 1 [Source:RGD Symbol%3BAcc:621586]
rn6_v1_chrX_-_29825439_29825439	1.73226	Pax4	ENSRNOT00000048155|Gemin8|ENSRNOG00000029038|gem (nuclear organelle) associated protein 8 [Source:RGD Symbol%3BAcc:1359160]
rn6_v1_chr8_+_12823155_12823155	1.66934	Pax4	ENSRNOT00000011008|Sesn3|ENSRNOG00000008173|sestrin 3 [Source:RGD Symbol%3BAcc:1309470]
rn6_v1_chr15_+_27346731_27346731	1.65865	Pax4	ENSRNOT00000046317|Olr1619|ENSRNOG00000048856|olfactory receptor 1619 [Source:RGD Symbol%3BAcc:1332633]
rn6_v1_chr8_-_67040005_67040005	1.61824	Pax4	ENSRNOT00000038641|Glce|ENSRNOG00000025372|glucuronic acid epimerase [Source:RGD Symbol%3BAcc:1565253]
rn6_v1_chr15_-_6587367_6587367	1.55251	Pax4	ENSRNOT00000038449|Zfp385d|ENSRNOG00000014661|zinc finger protein 385D [Source:RGD Symbol%3BAcc:1359606]
rn6_v1_chr7_+_122203532_122203532	1.37711	Pax4	ENSRNOT00000025382|Sgsm3|ENSRNOG00000018745|small G protein signaling modulator 3 [Source:RGD Symbol%3BAcc:735113]
rn6_v1_chr7_-_114573900_114573900	1.34737	Pax4	ENSRNOT00000011219|Ptk2|ENSRNOG00000007916|protein tyrosine kinase 2 [Source:RGD Symbol%3BAcc:3443]
rn6_v1_chr18_+_30527705_30527705	1.32562	Pax4	ENSRNOT00000027168|Pcdhb14|ENSRNOG00000020059|protocadherin beta 14 [Source:RGD Symbol%3BAcc:1307591]
rn6_v1_chr9_+_20765296_20765296	1.29078	Pax4	ENSRNOT00000016291|Cd2ap|ENSRNOG00000011987|CD2-associated protein [Source:RGD Symbol%3BAcc:727803]
rn6_v1_chr3_+_160047296_160047296	1.28182	Pax4	ENSRNOT00000051590|Pkig|ENSRNOG00000010235|cAMP-dependent protein kinase inhibitor gamma [Source:RGD Symbol%3BAcc:628775]
rn6_v1_chr9_-_10047507_10047507	1.25412	Pax4	ENSRNOT00000072118|Alkbh7|ENSRNOG00000047089|alkB homolog 7 [Source:RGD Symbol%3BAcc:1598126]
rn6_v1_chr1_-_221370322_221370322	1.20748	Pax4	ENSRNOT00000028431|Capn1|ENSRNOG00000020935|calpain 1 [Source:RGD Symbol%3BAcc:2267]
rn6_v1_chrX_+_128416722_128416809	1.18244	Pax4	ENSRNOT00000009336|Xiap|ENSRNOG00000006967|X-linked inhibitor of apoptosis [Source:RGD Symbol%3BAcc:620692]	ENSRNOT00000085110|Xiap|ENSRNOG00000006967|X-linked inhibitor of apoptosis [Source:RGD Symbol%3BAcc:620692]
rn6_v1_chr20_-_4401610_4401610	1.12893	Pax4	ENSRNOT00000091468|Ppt2|ENSRNOG00000000435|palmitoyl-protein thioesterase 2 [Source:RGD Symbol%3BAcc:620375]
rn6_v1_chr9_-_10471176_10471176	1.09629	Pax4	ENSRNOT00000089164|Safb|ENSRNOG00000050543|scaffold attachment factor B [Source:RGD Symbol%3BAcc:620613]
rn6_v1_chr2_+_188561429_188561548	1.07334	Pax4	ENSRNOT00000076458|Krtcap2|ENSRNOG00000020542|keratinocyte associated protein 2 [Source:RGD Symbol%3BAcc:1308413]	ENSRNOT00000027867|Krtcap2|ENSRNOG00000020542|keratinocyte associated protein 2 [Source:RGD Symbol%3BAcc:1308413]
rn6_v1_chr3_-_103043741_103043741	1.05688	Pax4	ENSRNOT00000052294|Olr775|ENSRNOG00000045988|olfactory receptor 775 [Source:RGD Symbol%3BAcc:1333829]
rn6_v1_chr4_-_99746560_99746560	1.04467	Pax4	ENSRNOT00000012021|Mrpl35|ENSRNOG00000008546|mitochondrial ribosomal protein L35 [Source:RGD Symbol%3BAcc:1307065]
rn6_v1_chr7_+_9279620_9279620	0.988036	Pax4	ENSRNOT00000011225|Olr1064|ENSRNOG00000008499|olfactory receptor 1064 [Source:RGD Symbol%3BAcc:1332775]
rn6_v1_chr6_-_114488880_114488880	0.987269	Pax4	ENSRNOT00000087560|AC118957.1|ENSRNOG00000057724|
rn6_v1_chr3_-_77800137_77800137	0.948244	Pax4	ENSRNOT00000071319|AABR07052831.1|ENSRNOG00000046674|
rn6_v1_chr4_+_87353254_87353254	0.887277	Pax4	ENSRNOT00000073670|Vom1r67|ENSRNOG00000052591|vomeronasal 1 receptor 67 [Source:RGD Symbol%3BAcc:1549708]
rn6_v1_chr8_+_19972793_19972793	0.857266	Pax4	ENSRNOT00000068066|Olr1159|ENSRNOG00000049191|olfactory receptor 1159 [Source:RGD Symbol%3BAcc:1334067]
rn6_v1_chr8_-_18062971_18062971	0.808742	Pax4	ENSRNOT00000045739|Olr1139|ENSRNOG00000045903|olfactory receptor 1139 [Source:RGD Symbol%3BAcc:1333385]
rn6_v1_chr3_-_148932878_148932878	0.808043	Pax4	ENSRNOT00000013881|Nol4l|ENSRNOG00000010417|nucleolar protein 4-like [Source:RGD Symbol%3BAcc:1563510]
rn6_v1_chr18_+_25613831_25613831	0.805175	Pax4	ENSRNOT00000091040|Tslp|ENSRNOG00000058856|thymic stromal lymphopoietin [Source:RGD Symbol%3BAcc:1586479]
rn6_v1_chr10_-_43912900_43912900	0.787314	Pax4	ENSRNOT00000029524|Olr1414|ENSRNOG00000026714|olfactory receptor 1414 [Source:RGD Symbol%3BAcc:1333036]
rn6_v1_chrX_-_70428364_70428364	0.764859	Pax4	ENSRNOT00000045907|P2ry4|ENSRNOG00000002953|pyrimidinergic receptor P2Y4 [Source:RGD Symbol%3BAcc:61798]
rn6_v1_chr7_-_6754349_6754349	0.717114	Pax4	ENSRNOT00000085061|Olr956|ENSRNOG00000053663|olfactory receptor 956 [Source:RGD Symbol%3BAcc:1334430]
rn6_v1_chr7_+_117605050_117605050	0.709687	Pax4	ENSRNOT00000047380|Slc52a2|ENSRNOG00000032561|solute carrier family 52 member 2 [Source:RGD Symbol%3BAcc:1560410]
rn6_v1_chr8_-_70436028_70436028	0.695673	Pax4	ENSRNOT00000077152|Slc24a1|ENSRNOG00000052051|solute carrier family 24 member 1 [Source:RGD Symbol%3BAcc:620080]
rn6_v1_chr13_-_53108713_53108713	0.625804	Pax4	ENSRNOT00000035404|RGD1311892|ENSRNOG00000025948|similar to hypothetical protein FLJ10901 [Source:RGD Symbol%3BAcc:1311892]
rn6_v1_chr4_+_71795768_71795768	0.567728	Pax4	ENSRNOT00000031921|Tas2r135|ENSRNOG00000026811|taste receptor%2C type 2%2C member 135 [Source:RGD Symbol%3BAcc:1561078]
rn6_v1_chr20_-_1878126_1878126	0.500968	Pax4	ENSRNOT00000000995|Ubd|ENSRNOG00000000768|ubiquitin D [Source:RGD Symbol%3BAcc:69418]
rn6_v1_chr6_+_28235695_28235695	0.326306	Pax4	ENSRNOT00000047210|Dnmt3a|ENSRNOG00000026649|DNA methyltransferase 3 alpha [Source:RGD Symbol%3BAcc:1303336]
rn6_v1_chr10_-_87351030_87351045	0.319939	Pax4	ENSRNOT00000034889|Krt20|ENSRNOG00000027139|keratin 20 [Source:RGD Symbol%3BAcc:628646]	ENSRNOT00000091152|Krt20|ENSRNOG00000027139|keratin 20 [Source:RGD Symbol%3BAcc:628646]
rn6_v1_chr2_-_250862419_250862419	0.274461	Pax4	ENSRNOT00000017943|Clca4|ENSRNOG00000029889|chloride channel accessory 4 [Source:RGD Symbol%3BAcc:1303234]
rn6_v1_chr1_+_273854248_273854342	0.26306	Pax4	ENSRNOT00000044827|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]	ENSRNOT00000017600|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]	ENSRNOT00000086496|Add3|ENSRNOG00000012820|adducin 3 [Source:RGD Symbol%3BAcc:2043]
rn6_v1_chr8_-_17524839_17524839	0.136218	Pax4	ENSRNOT00000081679|Naalad2|ENSRNOG00000005955|N-acetylated alpha-linked acidic dipeptidase 2 [Source:RGD Symbol%3BAcc:1305872]
rn6_v1_chr1_-_169845487_169845487	0.109484	Pax4	ENSRNOT00000039989|Olr179|ENSRNOG00000048628|olfactory receptor 179 [Source:RGD Symbol%3BAcc:1334060]
rn6_v1_chr7_-_138512952_138512952	0.0831613	Pax4	ENSRNOT00000009187|Slc38a4|ENSRNOG00000006653|solute carrier family 38%2C member 4 [Source:RGD Symbol%3BAcc:621836]
rn6_v1_chr3_+_102859815_102859815	0.0614549	Pax4	ENSRNOT00000037906|Olr771|ENSRNOG00000026885|olfactory receptor 771 [Source:RGD Symbol%3BAcc:1333904]
rn6_v1_chrX_-_123486814_123486814	0.00594737	Pax4	ENSRNOT00000016993|RGD1564541|ENSRNOG00000012564|similar to hypothetical protein FLJ22965 [Source:RGD Symbol%3BAcc:1564541]
