rn6_v1_chr3_+_149624712_149624712	26.9057	Rara	ENSRNOT00000018581|Bpifa1|ENSRNOG00000013859|BPI fold containing family A%2C member 1 [Source:RGD Symbol%3BAcc:619818]
rn6_v1_chr2_+_188543137_188543137	25.821	Rara	ENSRNOT00000027850|Muc1|ENSRNOG00000020539|mucin 1%2C cell surface associated [Source:RGD Symbol%3BAcc:3122]
rn6_v1_chrX_+_139780386_139780386	20.9491	Rara	ENSRNOT00000081147|AABR07041779.2|ENSRNOG00000056851|
rn6_v1_chr4_-_17594598_17594598	20.9136	Rara	ENSRNOT00000008936|Sema3e|ENSRNOG00000006631|semaphorin 3E [Source:RGD Symbol%3BAcc:1310973]
rn6_v1_chr5_-_50193571_50193571	19.1694	Rara	ENSRNOT00000051243|Cfap206|ENSRNOG00000009061|cilia and flagella associated protein 206 [Source:RGD Symbol%3BAcc:1310641]
rn6_v1_chr4_-_11610518_11610518	18.7857	Rara	ENSRNOT00000066643|Magi2|ENSRNOG00000013962|membrane associated guanylate kinase%2C WW and PDZ domain containing 2 [Source:RGD Symbol%3BAcc:621855]
rn6_v1_chr13_+_47454591_47454591	17.0906	Rara	ENSRNOT00000005791|LOC498222|ENSRNOG00000004341|similar to specifically androgen-regulated protein [Source:RGD Symbol%3BAcc:1565034]
rn6_v1_chr10_+_90348299_90348299	14.0144	Rara	ENSRNOT00000089616|Rundc3a|ENSRNOG00000020970|RUN domain containing 3A [Source:RGD Symbol%3BAcc:735057]
rn6_v1_chr4_+_96562725_96562725	13.7348	Rara	ENSRNOT00000009094|Ndnf|ENSRNOG00000006857|neuron-derived neurotrophic factor [Source:RGD Symbol%3BAcc:1311080]
rn6_v1_chr10_-_82229140_82229140	12.5187	Rara	ENSRNOT00000004400|Epn3|ENSRNOG00000003284|epsin 3 [Source:RGD Symbol%3BAcc:1306416]
rn6_v1_chr1_-_173682226_173682226	11.9369	Rara	ENSRNOT00000020137|Ric3|ENSRNOG00000014691|RIC3 acetylcholine receptor chaperone [Source:RGD Symbol%3BAcc:1588939]
rn6_v1_chr7_+_30699476_30699476	11.7732	Rara	ENSRNOT00000059269|Anks1b|ENSRNOG00000024870|ankyrin repeat and sterile alpha motif domain containing 1B [Source:RGD Symbol%3BAcc:1565556]
rn6_v1_chr10_-_14056169_14056169	11.6158	Rara	ENSRNOT00000017833|Syngr3|ENSRNOG00000012620|synaptogyrin 3 [Source:RGD Symbol%3BAcc:1311801]
rn6_v1_chr8_-_107656861_107656861	10.9611	Rara	ENSRNOT00000050374|Mras|ENSRNOG00000014060|muscle RAS oncogene homolog [Source:RGD Symbol%3BAcc:3111]
rn6_v1_chr13_-_52197205_52197205	9.99016	Rara	ENSRNOT00000009712|Shisa4|ENSRNOG00000007369|shisa family member 4 [Source:RGD Symbol%3BAcc:1312041]
rn6_v1_chr1_-_64350338_64350338	9.95195	Rara	ENSRNOT00000078444|Cacng8|ENSRNOG00000057848|calcium voltage-gated channel auxiliary subunit gamma 8 [Source:RGD Symbol%3BAcc:628808]
rn6_v1_chr20_-_31956649_31956649	9.87401	Rara	ENSRNOT00000072429|Hk1|ENSRNOG00000046891|hexokinase 1 [Source:RGD Symbol%3BAcc:2796]
rn6_v1_chr1_-_213973163_213973163	8.97753	Rara	ENSRNOT00000024867|LOC100911402|ENSRNOG00000018448|cell cycle exit and neuronal differentiation protein 1-like [Source:RGD Symbol%3BAcc:6493217]
rn6_v1_chrX_+_105537602_105537602	8.66348	Rara	ENSRNOT00000029833|Armcx1|ENSRNOG00000037709|armadillo repeat containing%2C X-linked 1 [Source:RGD Symbol%3BAcc:1561629]
rn6_v1_chr5_-_141242131_141242131	8.12536	Rara	ENSRNOT00000081482|Macf1|ENSRNOG00000016047|microtubule-actin crosslinking factor 1 [Source:RGD Symbol%3BAcc:1306057]
rn6_v1_chr2_-_123193130_123193130	8.04655	Rara	ENSRNOT00000019554|Anxa5|ENSRNOG00000014453|annexin A5 [Source:RGD Symbol%3BAcc:2120]
rn6_v1_chr18_+_60639860_60639860	7.87463	Rara	ENSRNOT00000083363|Nedd4l|ENSRNOG00000017610|neural precursor cell expressed%2C developmentally down-regulated 4-like%2C E3 ubiquitin protein ligase [Source:RGD Symbol%3BAcc:735047]
rn6_v1_chr5_-_152473868_152473868	7.54206	Rara	ENSRNOT00000022130|Fam110d|ENSRNOG00000016491|family with sequence similarity 110%2C member D [Source:RGD Symbol%3BAcc:1564994]
rn6_v1_chr19_+_10563423_10563423	7.50947	Rara	ENSRNOT00000021037|Dok4|ENSRNOG00000015679|docking protein 4 [Source:RGD Symbol%3BAcc:1310084]
rn6_v1_chr16_+_21061237_21061237	7.38452	Rara	ENSRNOT00000092136|Ncan|ENSRNOG00000048036|neurocan [Source:RGD Symbol%3BAcc:619941]
rn6_v1_chr18_+_48434652_48434652	7.066	Rara	ENSRNOT00000047755|Prdm6|ENSRNOG00000030486|PR/SET domain 6 [Source:RGD Symbol%3BAcc:1559594]
rn6_v1_chr12_-_40590361_40590361	6.74427	Rara	ENSRNOT00000067503|Tmem116|ENSRNOG00000027480|transmembrane protein 116 [Source:RGD Symbol%3BAcc:1596066]
rn6_v1_chr1_+_100299626_100299635	6.4317	Rara	ENSRNOT00000092327|Shank1|ENSRNOG00000019207|SH3 and multiple ankyrin repeat domains 1 [Source:RGD Symbol%3BAcc:621011]	ENSRNOT00000044257|Shank1|ENSRNOG00000019207|SH3 and multiple ankyrin repeat domains 1 [Source:RGD Symbol%3BAcc:621011]
rn6_v1_chr8_-_65587658_65587658	6.3755	Rara	ENSRNOT00000091982|Lrrc49|ENSRNOG00000012015|leucine rich repeat containing 49 [Source:RGD Symbol%3BAcc:1309466]
rn6_v1_chr6_+_111049559_111049559	6.23784	Rara	ENSRNOT00000015571|Tmem63c|ENSRNOG00000011334|transmembrane protein 63c [Source:RGD Symbol%3BAcc:1310207]
rn6_v1_chr16_+_20432899_20432899	6.11227	Rara	ENSRNOT00000026271|Mpv17l2|ENSRNOG00000019394|MPV17 mitochondrial inner membrane protein like 2 [Source:RGD Symbol%3BAcc:1308064]
rn6_v1_chr7_+_130532435_130532435	5.06153	Rara	ENSRNOT00000092672|Shank3|ENSRNOG00000052296|SH3 and multiple ankyrin repeat domains 3 [Source:RGD Symbol%3BAcc:69264]	ENSRNOT00000092535|Shank3|ENSRNOG00000052296|SH3 and multiple ankyrin repeat domains 3 [Source:RGD Symbol%3BAcc:69264]
rn6_v1_chr15_-_56970365_56970365	5.03725	Rara	ENSRNOT00000047192|Lrch1|ENSRNOG00000009412|leucine rich repeats and calponin homology domain containing 1 [Source:RGD Symbol%3BAcc:1595678]
rn6_v1_chr3_+_20641664_20641664	4.88778	Rara	ENSRNOT00000044699|AABR07051741.1|ENSRNOG00000057548|
rn6_v1_chr10_+_57218087_57218087	4.59318	Rara	ENSRNOT00000089853|Mink1|ENSRNOG00000033508|misshapen-like kinase 1 [Source:RGD Symbol%3BAcc:1359135]
rn6_v1_chr18_-_86878142_86878142	4.39061	Rara	ENSRNOT00000058139|Dok6|ENSRNOG00000038190|docking protein 6 [Source:RGD Symbol%3BAcc:1564376]
rn6_v1_chr2_+_178679395_178679395	4.37072	Rara	ENSRNOT00000088686|Fam198b|ENSRNOG00000010183|family with sequence similarity 198%2C member B [Source:RGD Symbol%3BAcc:735075]
rn6_v1_chr7_-_139223116_139223116	4.16339	Rara	ENSRNOT00000086559|Endou|ENSRNOG00000056446|endonuclease%2C poly(U)-specific [Source:RGD Symbol%3BAcc:1593011]
rn6_v1_chr8_-_47393503_47393503	4.09076	Rara	ENSRNOT00000059868|Arhgef12|ENSRNOG00000008924|Rho guanine nucleotide exchange factor 12 [Source:RGD Symbol%3BAcc:1305111]
rn6_v1_chr1_+_221538104_221538104	3.8772	Rara	ENSRNOT00000028527|Batf2|ENSRNOG00000021018|basic leucine zipper ATF-like transcription factor 2 [Source:RGD Symbol%3BAcc:1311481]
rn6_v1_chr8_-_127900463_127900463	3.69269	Rara	ENSRNOT00000078303|Slc22a13|ENSRNOG00000056476|solute carrier family 22 member 13 [Source:RGD Symbol%3BAcc:1306840]
rn6_v1_chr15_-_4057104_4057157	3.65265	Rara	ENSRNOT00000084350|Sec24c|ENSRNOG00000009042|SEC24 homolog C%2C COPII coat complex component [Source:RGD Symbol%3BAcc:1597739]	ENSRNOT00000012270|Sec24c|ENSRNOG00000009042|SEC24 homolog C%2C COPII coat complex component [Source:RGD Symbol%3BAcc:1597739]
rn6_v1_chr11_-_64968437_64968437	3.38304	Rara	ENSRNOT00000059541|Cox17|ENSRNOG00000038951|COX17 cytochrome c oxidase copper chaperone [Source:RGD Symbol%3BAcc:620548]
rn6_v1_chr14_+_85230648_85230648	3.11164	Rara	ENSRNOT00000089866|Ap1b1|ENSRNOG00000008786|adaptor-related protein complex 1%2C beta 1 subunit [Source:RGD Symbol%3BAcc:2064]
rn6_v1_chrX_+_96991658_96991658	2.90157	Rara	ENSRNOT00000049969|AABR07040288.1|ENSRNOG00000047560|
rn6_v1_chr4_+_101882994_101882994	2.87547	Rara	ENSRNOT00000087773|AABR07060963.1|ENSRNOG00000055428|
rn6_v1_chr2_+_178679041_178679041	2.84567	Rara	ENSRNOT00000013524|Fam198b|ENSRNOG00000010183|family with sequence similarity 198%2C member B [Source:RGD Symbol%3BAcc:735075]
rn6_v1_chr8_-_50277797_50277797	2.59981	Rara	ENSRNOT00000082508|Pafah1b2|ENSRNOG00000057102|platelet-activating factor acetylhydrolase 1b%2C catalytic subunit 2 [Source:RGD Symbol%3BAcc:620332]
rn6_v1_chr3_-_20518105_20518105	2.53314	Rara	ENSRNOT00000050435|AABR07051735.1|ENSRNOG00000031229|
rn6_v1_chr12_+_50270189_50270189	2.51886	Rara	ENSRNOT00000086782|Asphd2|ENSRNOG00000061004|aspartate beta-hydroxylase domain containing 2 [Source:RGD Symbol%3BAcc:1306020]
rn6_v1_chr3_-_20419417_20419417	2.37329	Rara	ENSRNOT00000077772|AABR07051733.3|ENSRNOG00000058552|
rn6_v1_chr20_+_42966140_42966140	2.04572	Rara	ENSRNOT00000000707|Marcks|ENSRNOG00000000579|myristoylated alanine rich protein kinase C substrate [Source:RGD Symbol%3BAcc:3028]
rn6_v1_chr10_-_56444847_56444847	2.02823	Rara	ENSRNOT00000056872|Nlgn2|ENSRNOG00000015430|neuroligin 2 [Source:RGD Symbol%3BAcc:621118]	ENSRNOT00000092662|Nlgn2|ENSRNOG00000015430|neuroligin 2 [Source:RGD Symbol%3BAcc:621118]
rn6_v1_chr2_+_62887267_62887267	2.01811	Rara	ENSRNOT00000048026|Drosha|ENSRNOG00000013451|drosha ribonuclease III [Source:RGD Symbol%3BAcc:1307626]
rn6_v1_chr1_-_227486976_227486976	1.7656	Rara	ENSRNOT00000035812|Ms4a14|ENSRNOG00000025805|membrane spanning 4-domains A14 [Source:RGD Symbol%3BAcc:727900]
rn6_v1_chr10_+_68232094_68232094	1.67645	Rara	ENSRNOT00000009172|Spaca3|ENSRNOG00000006994|sperm acrosome associated 3 [Source:RGD Symbol%3BAcc:1306684]
rn6_v1_chr1_+_99648658_99648658	1.59287	Rara	ENSRNOT00000039531|Klk13|ENSRNOG00000022353|kallikrein related-peptidase 13 [Source:RGD Symbol%3BAcc:1309337]
rn6_v1_chr6_-_124429701_124429701	1.57793	Rara	ENSRNOT00000037902|Ttc7b|ENSRNOG00000027300|tetratricopeptide repeat domain 7B [Source:RGD Symbol%3BAcc:1305920]	ENSRNOT00000080950|Ttc7b|ENSRNOG00000027300|tetratricopeptide repeat domain 7B [Source:RGD Symbol%3BAcc:1305920]
rn6_v1_chr8_-_21384131_21384131	1.56069	Rara	ENSRNOT00000071010|Zfp560|ENSRNOG00000048394|zinc finger protein 560 [Source:RGD Symbol%3BAcc:2323078]
rn6_v1_chrX_-_45000363_45000363	1.54717	Rara	ENSRNOT00000035538|Cldn34e|ENSRNOG00000026351|claudin 34E [Source:RGD Symbol%3BAcc:1591711]
rn6_v1_chr6_-_26051229_26051229	1.44262	Rara	ENSRNOT00000005855|Bre|ENSRNOG00000004364|brain and reproductive organ-expressed (TNFRSF1A modulator) [Source:RGD Symbol%3BAcc:735111]
rn6_v1_chr3_+_18315320_18315320	1.43973	Rara	ENSRNOT00000006954|AABR07051626.2|ENSRNOG00000050889|
rn6_v1_chr16_+_7088476_7088476	1.40648	Rara	ENSRNOT00000024624|Glt8d1|ENSRNOG00000018179|glycosyltransferase 8 domain containing 1 [Source:RGD Symbol%3BAcc:1359293]
rn6_v1_chr10_+_10774639_10774639	1.25825	Rara	ENSRNOT00000061208|Sept12|ENSRNOG00000003137|septin 12 [Source:RGD Symbol%3BAcc:1565511]
rn6_v1_chr20_+_3827086_3827086	1.24281	Rara	ENSRNOT00000081588|Rxrb|ENSRNOG00000000464|retinoid X receptor beta [Source:RGD Symbol%3BAcc:3611]
rn6_v1_chr3_+_176865156_176865156	1.19377	Rara	ENSRNOT00000019084|Zgpat|ENSRNOG00000014235|zinc finger CCCH-type and G-patch domain containing [Source:RGD Symbol%3BAcc:1310801]
rn6_v1_chr6_-_92527711_92527711	1.17336	Rara	ENSRNOT00000007529|Nin|ENSRNOG00000005540|ninein [Source:RGD Symbol%3BAcc:1306492]
rn6_v1_chr1_-_100746021_100746021	0.967743	Rara	ENSRNOT00000037973|Zfp473|ENSRNOG00000026572|zinc finger protein 473 [Source:RGD Symbol%3BAcc:1305084]
rn6_v1_chr1_+_255040426_255040426	0.942945	Rara	ENSRNOT00000092151|Pcgf5|ENSRNOG00000018532|polycomb group ring finger 5 [Source:RGD Symbol%3BAcc:1583513]
rn6_v1_chr2_+_178117466_178117486	0.919093	Rara	ENSRNOT00000065115|LOC499643|ENSRNOG00000032009|similar to hypothetical protein FLJ25371 [Source:RGD Symbol%3BAcc:1566255]	ENSRNOT00000084198|LOC499643|ENSRNOG00000032009|similar to hypothetical protein FLJ25371 [Source:RGD Symbol%3BAcc:1566255]
rn6_v1_chr11_-_84037938_84037938	0.810529	Rara	ENSRNOT00000002327|Abcf3|ENSRNOG00000001710|ATP binding cassette subfamily F member 3 [Source:RGD Symbol%3BAcc:1310468]
rn6_v1_chr10_+_14216155_14216155	0.701099	Rara	ENSRNOT00000020192|Hagh|ENSRNOG00000014743|hydroxyacyl glutathione hydrolase [Source:RGD Symbol%3BAcc:2779]
rn6_v1_chr4_+_147514120_147514120	0.609345	Rara	ENSRNOT00000013146|Mkrn2|ENSRNOG00000009176|makorin%2C ring finger protein%2C 2 [Source:RGD Symbol%3BAcc:1310618]
rn6_v1_chr2_+_203768117_203768117	0.481041	Rara	ENSRNOT00000080176|Igsf3|ENSRNOG00000023851|immunoglobulin superfamily%2C member 3 [Source:RGD Symbol%3BAcc:1307796]
rn6_v1_chr1_+_88182155_88182155	0.427456	Rara	ENSRNOT00000083176|Yif1b|ENSRNOG00000055286|Yip1 interacting factor homolog B%2C membrane trafficking protein [Source:RGD Symbol%3BAcc:735199]
rn6_v1_chr2_-_62887048_62887048	0.169871	Rara	ENSRNOT00000039234|RGD1306502|ENSRNOG00000022745|similar to hypothetical protein FLJ11193 [Source:RGD Symbol%3BAcc:1306502]
rn6_v1_chr15_+_34296922_34296922	0.153844	Rara	ENSRNOT00000026430|Rec8|ENSRNOG00000019503|REC8 meiotic recombination protein [Source:RGD Symbol%3BAcc:1309376]
rn6_v1_chr3_-_72219246_72219246	0.131327	Rara	ENSRNOT00000009903|Smtnl1|ENSRNOG00000007516|smoothelin-like 1 [Source:RGD Symbol%3BAcc:1311701]
rn6_v1_chr12_-_21746236_21746236	0.117259	Rara	ENSRNOT00000001869|LOC102550456|ENSRNOG00000024616|TSC22 domain family protein 4-like [Source:RGD Symbol%3BAcc:7605479]
