rn6_v1_chr8_-_62948720_62948720	7.78571	Runx3	ENSRNOT00000075476|Islr|ENSRNOG00000048924|immunoglobulin superfamily containing leucine-rich repeat [Source:RGD Symbol%3BAcc:1596359]
rn6_v1_chr7_-_126913585_126913585	6.94711	Runx3	ENSRNOT00000036025|Celsr1|ENSRNOG00000021285|cadherin%2C EGF LAG seven-pass G-type receptor 1 [Source:RGD Symbol%3BAcc:1560078]
rn6_v1_chr4_-_170763916_170763916	6.77025	Runx3	ENSRNOT00000071512|Hist1h4m|ENSRNOG00000045840|histone cluster 1%2C H4m [Source:RGD Symbol%3BAcc:1306905]
rn6_v1_chr1_+_198528635_198528635	6.66721	Runx3	ENSRNOT00000022765|LOC308990|ENSRNOG00000016978|hypothetical protein LOC308990 [Source:RGD Symbol%3BAcc:1564503]
rn6_v1_chr4_-_170092848_170092848	6.43885	Runx3	ENSRNOT00000072147|Hist2h4|ENSRNOG00000048735|histone cluster 2%2C H4 [Source:RGD Symbol%3BAcc:1307448]
rn6_v1_chr2_+_225827504_225827504	6.40626	Runx3	ENSRNOT00000018343|Gclm|ENSRNOG00000013409|glutamate cysteine ligase%2C modifier subunit [Source:RGD Symbol%3BAcc:619871]
rn6_v1_chr12_-_22417980_22417980	6.07033	Runx3	ENSRNOT00000072208|Ephb4|ENSRNOG00000045952|EPH receptor B4 [Source:RGD Symbol%3BAcc:1583193]
rn6_v1_chr4_-_170117325_170117325	5.13646	Runx3	ENSRNOT00000074198|LOC100912564|ENSRNOG00000048642|histone H4-like [Source:RGD Symbol%3BAcc:6486282]
rn6_v1_chr4_-_170145262_170145262	5.01594	Runx3	ENSRNOT00000074526|Hist1h4b|ENSRNOG00000045978|histone cluster 1%2C H4b [Source:RGD Symbol%3BAcc:620814]
rn6_v1_chr17_-_44815995_44815995	4.8983	Runx3	ENSRNOT00000091201|RGD1562378|ENSRNOG00000057690|histone H4 variant H4-v.1 [Source:RGD Symbol%3BAcc:1562378]
rn6_v1_chr17_+_43673294_43673294	4.54903	Runx3	ENSRNOT00000074109|Hist2h4a|ENSRNOG00000046636|histone cluster 2%2C H4 [Source:RGD Symbol%3BAcc:1565073]
rn6_v1_chrX_+_68891227_68891227	4.44549	Runx3	ENSRNOT00000009635|Efnb1|ENSRNOG00000006877|ephrin B1 [Source:RGD Symbol%3BAcc:2540]
rn6_v1_chr5_+_105230580_105230580	4.39986	Runx3	ENSRNOT00000010056|Acer2|ENSRNOG00000007637|alkaline ceramidase 2 [Source:RGD Symbol%3BAcc:1304629]
rn6_v1_chr5_+_149077412_149077412	4.37834	Runx3	ENSRNOT00000014666|Matn1|ENSRNOG00000010932|matrilin 1%2C cartilage matrix protein [Source:RGD Symbol%3BAcc:1359410]
rn6_v1_chr9_-_61418679_61418679	4.12589	Runx3	ENSRNOT00000078800|Ankrd44|ENSRNOG00000021384|ankyrin repeat domain 44 [Source:RGD Symbol%3BAcc:1561893]
rn6_v1_chr4_+_22898527_22898527	3.95109	Runx3	ENSRNOT00000072455|Dbf4|ENSRNOG00000050482|DBF4 zinc finger [Source:RGD Symbol%3BAcc:1305854]	ENSRNOT00000076123|Dbf4|ENSRNOG00000050482|DBF4 zinc finger [Source:RGD Symbol%3BAcc:1305854]
rn6_v1_chr4_+_119680112_119680112	3.93453	Runx3	ENSRNOT00000013282|Gp9|ENSRNOG00000010015|glycoprotein IX (platelet) [Source:RGD Symbol%3BAcc:1561601]
rn6_v1_chr1_+_224800252_224800252	3.91106	Runx3	ENSRNOT00000024488|Slc22a8|ENSRNOG00000018086|solute carrier family 22 member 8 [Source:RGD Symbol%3BAcc:632286]
rn6_v1_chr17_-_27665266_27665266	3.68531	Runx3	ENSRNOT00000060218|Rreb1|ENSRNOG00000015701|ras responsive element binding protein 1 [Source:RGD Symbol%3BAcc:1310904]
rn6_v1_chr10_-_88144468_88144468	3.65525	Runx3	ENSRNOT00000084619|Ka11|ENSRNOG00000061636|type I keratin KA11 [Source:RGD Symbol%3BAcc:1359526]
rn6_v1_chr13_+_89386023_89386023	3.64548	Runx3	ENSRNOT00000086223|Fcgr3a|ENSRNOG00000024382|Fc fragment of IgG receptor IIIa [Source:RGD Symbol%3BAcc:1303067]
rn6_v1_chr1_+_214203861_214203861	3.30594	Runx3	ENSRNOT00000023219|Rassf7|ENSRNOG00000017109|Ras association domain family member 7 [Source:RGD Symbol%3BAcc:1306244]
rn6_v1_chr19_+_43251539_43251539	3.28896	Runx3	ENSRNOT00000024793|Ddx19a|ENSRNOG00000018033|DEAD-box helicase 19A [Source:RGD Symbol%3BAcc:1303136]
rn6_v1_chr4_+_49056010_49056010	3.1817	Runx3	ENSRNOT00000038566|Cped1|ENSRNOG00000021840|cadherin-like and PC-esterase domain containing 1 [Source:RGD Symbol%3BAcc:1563491]
rn6_v1_chr7_-_120077612_120077612	3.16071	Runx3	ENSRNOT00000011750|Lgals2|ENSRNOG00000008539|galectin 2 [Source:RGD Symbol%3BAcc:621269]
rn6_v1_chr6_+_107245820_107245820	3.05727	Runx3	ENSRNOT00000012757|Papln|ENSRNOG00000009448|papilin%2C proteoglycan-like sulfated glycoprotein [Source:RGD Symbol%3BAcc:1311176]
rn6_v1_chr10_-_87928251_87928251	2.78645	Runx3	ENSRNOT00000064120|Krtap17-1|ENSRNOG00000042473|keratin associated protein 17-1 [Source:RGD Symbol%3BAcc:7611738]
rn6_v1_chr5_-_161981441_161981441	2.77869	Runx3	ENSRNOT00000020316|Pdpn|ENSRNOG00000014961|podoplanin [Source:RGD Symbol%3BAcc:61819]
rn6_v1_chr2_-_210934749_210934749	2.76666	Runx3	ENSRNOT00000026710|Gnai3|ENSRNOG00000019465|G protein subunit alpha i3 [Source:RGD Symbol%3BAcc:2714]
rn6_v1_chr3_-_13978224_13978224	2.63633	Runx3	ENSRNOT00000025528|Phf19|ENSRNOG00000018874|PHD finger protein 19 [Source:RGD Symbol%3BAcc:1310390]
rn6_v1_chr15_+_47293699_47293699	2.51915	Runx3	ENSRNOT00000016503|Sox7|ENSRNOG00000012049|SRY box 7 [Source:RGD Symbol%3BAcc:1310038]
rn6_v1_chr13_+_92249759_92249759	2.3163	Runx3	ENSRNOT00000089352|Olr1596|ENSRNOG00000057400|olfactory receptor 1596 [Source:RGD Symbol%3BAcc:1333784]
rn6_v1_chr10_-_88144625_88144625	2.20897	Runx3	ENSRNOT00000086209|Ka11|ENSRNOG00000061636|type I keratin KA11 [Source:RGD Symbol%3BAcc:1359526]
rn6_v1_chr1_-_72468738_72468738	2.11094	Runx3	ENSRNOT00000029136|Zfp628|ENSRNOG00000038622|zinc finger protein 628 [Source:RGD Symbol%3BAcc:2323809]
rn6_v1_chr10_-_110701137_110701137	2.09196	Runx3	ENSRNOT00000074193|Znf750|ENSRNOG00000046482|zinc finger protein 750 [Source:RGD Symbol%3BAcc:1590044]
rn6_v1_chr10_+_59533480_59533480	2.03975	Runx3	ENSRNOT00000087723|Atp2a3|ENSRNOG00000017912|ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 [Source:RGD Symbol%3BAcc:2175]
rn6_v1_chr13_-_92988137_92988137	2.01296	Runx3	ENSRNOT00000004803|Grem2|ENSRNOG00000003616|gremlin 2%2C DAN family BMP antagonist [Source:RGD Symbol%3BAcc:1560008]
rn6_v1_chr3_+_45683993_45683993	1.92764	Runx3	ENSRNOT00000038983|Tanc1|ENSRNOG00000025394|tetratricopeptide repeat%2C ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol%3BAcc:1302949]
rn6_v1_chr1_-_142114634_142114634	1.84955	Runx3	ENSRNOT00000029471|Rccd1|ENSRNOG00000042059|RCC1 domain containing 1 [Source:RGD Symbol%3BAcc:1309901]
rn6_v1_chrX_+_78259409_78259409	1.84265	Runx3	ENSRNOT00000049779|RGD1560455|ENSRNOG00000037838|similar to RIKEN cDNA A630033H20 gene [Source:RGD Symbol%3BAcc:1560455]
rn6_v1_chr17_+_53956203_53956203	1.82528	Runx3	ENSRNOT00000022483|Ggps1|ENSRNOG00000016767|geranylgeranyl diphosphate synthase 1 [Source:RGD Symbol%3BAcc:1359680]
rn6_v1_chr5_+_18963937_18963937	1.77765	Runx3	ENSRNOT00000082188|AABR07047089.1|ENSRNOG00000055063|
rn6_v1_chr2_+_210034095_210034095	1.70775	Runx3	ENSRNOT00000024473|Lamtor5|ENSRNOG00000018186|late endosomal/lysosomal adaptor%2C MAPK and MTOR activator 5 [Source:RGD Symbol%3BAcc:1305005]
rn6_v1_chr20_-_5244386_5244386	1.56957	Runx3	ENSRNOT00000070886|RT1-DMa|ENSRNOG00000047864|RT1 class II%2C locus DMa [Source:RGD Symbol%3BAcc:735053]
rn6_v1_chr7_+_132857628_132857628	1.3867	Runx3	ENSRNOT00000005438|Lrrk2|ENSRNOG00000004048|leucine-rich repeat kinase 2 [Source:RGD Symbol%3BAcc:1561168]
rn6_v1_chr4_+_147832136_147832136	1.32939	Runx3	ENSRNOT00000064603|Rho|ENSRNOG00000011144|rhodopsin [Source:RGD Symbol%3BAcc:3573]
rn6_v1_chr14_-_86117578_86117578	1.31347	Runx3	ENSRNOT00000019288|Pold2|ENSRNOG00000014098|DNA polymerase delta 2%2C accessory subunit [Source:RGD Symbol%3BAcc:1304954]
rn6_v1_chr2_-_181900856_181900856	1.28381	Runx3	ENSRNOT00000082156|Lrat|ENSRNOG00000025608|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) [Source:RGD Symbol%3BAcc:68362]
rn6_v1_chr8_-_7426611_7426611	1.25844	Runx3	ENSRNOT00000031492|Arhgap42|ENSRNOG00000026821|Rho GTPase activating protein 42 [Source:RGD Symbol%3BAcc:1564081]
rn6_v1_chr4_+_100209951_100209951	1.24731	Runx3	ENSRNOT00000015807|LOC691113|ENSRNOG00000011713|hypothetical protein LOC691113 [Source:RGD Symbol%3BAcc:1587471]
rn6_v1_chr1_-_221087449_221087449	1.17677	Runx3	ENSRNOT00000016987|Fam89b|ENSRNOG00000024239|family with sequence similarity 89%2C member B [Source:RGD Symbol%3BAcc:1311544]
rn6_v1_chr6_-_145777767_145777767	1.06414	Runx3	ENSRNOT00000046799|Rpl32|ENSRNOG00000032605|ribosomal protein L32 [Source:RGD Symbol%3BAcc:621203]
rn6_v1_chr4_+_6827429_6827429	1.05958	Runx3	ENSRNOT00000071737|Rheb|ENSRNOG00000050578|Ras homolog enriched in brain [Source:RGD Symbol%3BAcc:621840]
rn6_v1_chr8_-_116872215_116872215	1.02216	Runx3	ENSRNOT00000045410|Apeh|ENSRNOG00000029572|acylaminoacyl-peptide hydrolase [Source:RGD Symbol%3BAcc:2125]
rn6_v1_chr2_-_193063357_193063357	0.966117	Runx3	ENSRNOT00000072995|AABR07012317.2|ENSRNOG00000049173|
rn6_v1_chr20_-_3386048_3386106	0.960542	Runx3	ENSRNOT00000089550|Dhx16|ENSRNOG00000030157|DEAH-box helicase 16 [Source:RGD Symbol%3BAcc:1302963]	ENSRNOT00000065025|Dhx16|ENSRNOG00000030157|DEAH-box helicase 16 [Source:RGD Symbol%3BAcc:1302963]
rn6_v1_chr14_+_108412152_108412152	0.946596	Runx3	ENSRNOT00000083707|Pus10|ENSRNOG00000054151|pseudouridylate synthase 10 [Source:RGD Symbol%3BAcc:1306402]
rn6_v1_chr2_-_198120041_198120120	0.937174	Runx3	ENSRNOT00000079621|Plekho1|ENSRNOG00000021170|pleckstrin homology domain containing O1 [Source:RGD Symbol%3BAcc:1311487]	ENSRNOT00000028747|Plekho1|ENSRNOG00000021170|pleckstrin homology domain containing O1 [Source:RGD Symbol%3BAcc:1311487]
rn6_v1_chr16_-_69195097_69195097	0.900787	Runx3	ENSRNOT00000018973|Erlin2|ENSRNOG00000013763|ER lipid raft associated 2 [Source:RGD Symbol%3BAcc:1309010]
rn6_v1_chr1_+_69789110_69789110	0.899126	Runx3	ENSRNOT00000088123|NEWGENE_1305281|ENSRNOG00000050407|hippocampus abundant transcript 1 [Source:RGD Symbol%3BAcc:9294064]
rn6_v1_chr5_-_151898022_151898022	0.899073	Runx3	ENSRNOT00000000133|Pigv|ENSRNOG00000000121|phosphatidylinositol glycan anchor biosynthesis%2C class V [Source:RGD Symbol%3BAcc:1309526]
rn6_v1_chr5_-_2882668_2882668	0.878843	Runx3	ENSRNOT00000049741|Terf1|ENSRNOG00000007291|telomeric repeat binding factor 1 [Source:RGD Symbol%3BAcc:1311574]
rn6_v1_chr10_+_63677396_63677396	0.872466	Runx3	ENSRNOT00000005100|Slc43a2|ENSRNOG00000003835|solute carrier family 43 member 2 [Source:RGD Symbol%3BAcc:1305819]
rn6_v1_chr4_+_115473811_115473811	0.870429	Runx3	ENSRNOT00000042875|Nagk|ENSRNOG00000013911|N-acetylglucosamine kinase [Source:RGD Symbol%3BAcc:1305057]
rn6_v1_chr9_-_43139870_43139870	0.849544	Runx3	ENSRNOT00000021956|Sema4c|ENSRNOG00000016254|semaphorin 4C [Source:RGD Symbol%3BAcc:1562837]
rn6_v1_chr6_+_108831108_108831108	0.825801	Runx3	ENSRNOT00000038594|LOC103692678|ENSRNOG00000027305|U6 snRNA-associated Sm-like protein LSm5 pseudogene [Source:RGD Symbol%3BAcc:9176652]
rn6_v1_chr2_-_9023104_9023104	0.82076	Runx3	ENSRNOT00000039652|Adgrv1|ENSRNOG00000016306|adhesion G protein-coupled receptor V1 [Source:RGD Symbol%3BAcc:1562101]
rn6_v1_chr7_+_14589520_14589520	0.79632	Runx3	ENSRNOT00000060210|Cyp4f37|ENSRNOG00000048450|cytochrome P450%2C family 4%2C subfamily f%2C polypeptide 37 [Source:RGD Symbol%3BAcc:1585102]
rn6_v1_chr1_-_77830399_77830399	0.690469	Runx3	ENSRNOT00000052231|LOC100360449|ENSRNOG00000028449|ribosomal protein L9-like [Source:RGD Symbol%3BAcc:2322107]
rn6_v1_chr10_+_11046221_11046221	0.66567	Runx3	ENSRNOT00000005109|Nmral1|ENSRNOG00000003794|NmrA like redox sensor 1 [Source:RGD Symbol%3BAcc:1311451]
rn6_v1_chr15_+_30812576_30812576	0.65422	Runx3	ENSRNOT00000060420|AABR07017768.1|ENSRNOG00000046840|
rn6_v1_chr20_+_4966817_4966817	0.643944	Runx3	ENSRNOT00000081527|Lsm2|ENSRNOG00000048725|LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1598536]	ENSRNOT00000081265|Lsm2|ENSRNOG00000048725|LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1598536]
rn6_v1_chr2_+_116372519_116372519	0.606041	Runx3	ENSRNOT00000031730|Lrrc34|ENSRNOG00000027935|leucine rich repeat containing 34 [Source:RGD Symbol%3BAcc:1565052]
rn6_v1_chr15_-_29976615_29976615	0.600268	Runx3	ENSRNOT00000060396|AABR07017676.1|ENSRNOG00000046567|
rn6_v1_chr10_-_15667955_15668022	0.584314	Runx3	ENSRNOT00000085746|Mpg|ENSRNOG00000020571|N-methylpurine-DNA glycosylase [Source:RGD Symbol%3BAcc:3106]	ENSRNOT00000027940|Mpg|ENSRNOG00000020571|N-methylpurine-DNA glycosylase [Source:RGD Symbol%3BAcc:3106]
rn6_v1_chr14_+_78939903_78939961	0.579144	Runx3	ENSRNOT00000078562|Man2b2|ENSRNOG00000061779|mannosidase%2C alpha%2C class 2B%2C member 2 [Source:RGD Symbol%3BAcc:1308840]	ENSRNOT00000088221|Mrfap1|ENSRNOG00000056162|Morf4 family associated protein 1 [Source:RGD Symbol%3BAcc:628631]
rn6_v1_chr10_-_61744976_61745097	0.575854	Runx3	ENSRNOT00000079926|Sgsm2|ENSRNOG00000027194|small G protein signaling modulator 2 [Source:RGD Symbol%3BAcc:1306957]	ENSRNOT00000092314|Sgsm2|ENSRNOG00000027194|small G protein signaling modulator 2 [Source:RGD Symbol%3BAcc:1306957]	ENSRNOT00000034298|Sgsm2|ENSRNOG00000027194|small G protein signaling modulator 2 [Source:RGD Symbol%3BAcc:1306957]
rn6_v1_chr20_+_4967194_4967194	0.515887	Runx3	ENSRNOT00000070846|Lsm2|ENSRNOG00000048725|LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated [Source:RGD Symbol%3BAcc:1598536]
rn6_v1_chr3_-_10161989_10161989	0.514788	Runx3	ENSRNOT00000012312|Exosc2|ENSRNOG00000009245|exosome component 2 [Source:RGD Symbol%3BAcc:1306573]
rn6_v1_chr1_+_69788609_69788609	0.448397	Runx3	ENSRNOT00000075340|NEWGENE_1305281|ENSRNOG00000050407|hippocampus abundant transcript 1 [Source:RGD Symbol%3BAcc:9294064]
rn6_v1_chrX_+_157353577_157353577	0.417973	Runx3	ENSRNOT00000090596|Haus7|ENSRNOG00000055648|HAUS augmin-like complex%2C subunit 7 [Source:RGD Symbol%3BAcc:1562991]
rn6_v1_chr10_+_11046024_11046024	0.389177	Runx3	ENSRNOT00000084850|Nmral1|ENSRNOG00000003794|NmrA like redox sensor 1 [Source:RGD Symbol%3BAcc:1311451]
rn6_v1_chr13_+_110372164_110372164	0.381134	Runx3	ENSRNOT00000049634|RGD1560186|ENSRNOG00000031098|similar to ribosomal protein L37 [Source:RGD Symbol%3BAcc:1560186]
rn6_v1_chr7_+_2504695_2504695	0.372606	Runx3	ENSRNOT00000003965|Atp5b|ENSRNOG00000002840|ATP synthase%2C H+ transporting%2C mitochondrial F1 complex%2C beta polypeptide [Source:RGD Symbol%3BAcc:621368]
rn6_v1_chr7_+_2827247_2827247	0.346379	Runx3	ENSRNOT00000090689|Rnf41|ENSRNOG00000023456|ring finger protein 41 [Source:RGD Symbol%3BAcc:1309557]
rn6_v1_chr6_-_115352681_115352681	0.340955	Runx3	ENSRNOT00000005873|Gtf2a1|ENSRNOG00000004300|general transcription factor 2A subunit 1 [Source:RGD Symbol%3BAcc:69246]
rn6_v1_chr5_+_57738321_57738321	0.329272	Runx3	ENSRNOT00000063849|Ubap1|ENSRNOG00000012004|ubiquitin-associated protein 1 [Source:RGD Symbol%3BAcc:1305186]
rn6_v1_chr10_+_48240330_48240330	0.303209	Runx3	ENSRNOT00000057798|Specc1|ENSRNOG00000002903|sperm antigen with calponin homology and coiled-coil domains 1 [Source:RGD Symbol%3BAcc:1309718]
rn6_v1_chr5_-_25721072_25721072	0.297998	Runx3	ENSRNOT00000021839|Tmem67|ENSRNOG00000016187|transmembrane protein 67 [Source:RGD Symbol%3BAcc:1586167]
rn6_v1_chr2_-_219693629_219693629	0.255839	Runx3	ENSRNOT00000020907|Mfsd14a|ENSRNOG00000015502|major facilitator superfamily domain containing 14A [Source:RGD Symbol%3BAcc:1305281]
rn6_v1_chr9_+_10995198_10995198	0.209551	Runx3	ENSRNOT00000089071|Ubxn6|ENSRNOG00000048509|UBX domain protein 6 [Source:RGD Symbol%3BAcc:1590866]
rn6_v1_chr10_-_85435016_85435016	0.206348	Runx3	ENSRNOT00000079921|4933428G20Rik|ENSRNOG00000055533|RIKEN cDNA 4933428G20 gene [Source:MGI Symbol%3BAcc:MGI:1918475]
rn6_v1_chr12_+_2228670_2228670	0.192802	Runx3	ENSRNOT00000001327|Trappc5|ENSRNOG00000001003|trafficking protein particle complex 5 [Source:RGD Symbol%3BAcc:1563971]
rn6_v1_chr10_-_14373334_14373334	0.123463	Runx3	ENSRNOT00000022050|Cramp1|ENSRNOG00000024635|cramped chromatin regulator homolog 1 [Source:RGD Symbol%3BAcc:1311948]
rn6_v1_chrX_+_63343546_63343546	0.110662	Runx3	ENSRNOT00000076315|Klhl15|ENSRNOG00000006515|kelch-like family member 15 [Source:RGD Symbol%3BAcc:1563101]
rn6_v1_chr1_-_235813030_235813030	0.0474767	Runx3	ENSRNOT00000014800|Vps13a|ENSRNOG00000025539|vacuolar protein sorting 13A [Source:RGD Symbol%3BAcc:1311340]
rn6_v1_chr10_+_48240127_48240127	0.0259298	Runx3	ENSRNOT00000080682|Specc1|ENSRNOG00000002903|sperm antigen with calponin homology and coiled-coil domains 1 [Source:RGD Symbol%3BAcc:1309718]
