rn6_v1_chr1_-_81534140_81534140	49.6503	Sox1	ENSRNOT00000027202|Tex101|ENSRNOG00000020057|testis expressed 101 [Source:RGD Symbol%3BAcc:621373]
rn6_v1_chr10_-_5533695_5533695	44.1172	Sox1	ENSRNOT00000051564|Rpl39l|ENSRNOG00000032300|ribosomal protein L39-like [Source:RGD Symbol%3BAcc:1561345]
rn6_v1_chr2_+_138194136_138194136	39.7542	Sox1	ENSRNOT00000014928|RGD1307595|ENSRNOG00000011239|similar to RIKEN cDNA 1700018B24 [Source:RGD Symbol%3BAcc:1307595]
rn6_v1_chr18_-_41899450_41899450	39.6158	Sox1	ENSRNOT00000057099|RGD1561114|ENSRNOG00000030956|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]
rn6_v1_chr7_+_34744483_34744483	37.9565	Sox1	ENSRNOT00000007465|Usp44|ENSRNOG00000005637|ubiquitin specific peptidase 44 [Source:RGD Symbol%3BAcc:1308216]
rn6_v1_chr7_+_34402738_34402738	36.6507	Sox1	ENSRNOT00000030985|Ccdc38|ENSRNOG00000021892|coiled-coil domain containing 38 [Source:RGD Symbol%3BAcc:1564046]
rn6_v1_chr16_+_12174370_12174370	34.4466	Sox1	ENSRNOT00000072045|LOC102553538|ENSRNOG00000048679|ral guanine nucleotide dissociation stimulator-like [Source:RGD Symbol%3BAcc:7716637]
rn6_v1_chr16_+_12976906_12976906	33.2001	Sox1	ENSRNOT00000029573|LOC685463|ENSRNOG00000022798|similar to Ral guanine nucleotide dissociation stimulator (RalGEF) (RalGDS) [Source:RGD Symbol%3BAcc:1593794]
rn6_v1_chr12_+_45319501_45319501	33.069	Sox1	ENSRNOT00000090630|RGD1561114|ENSRNOG00000052647|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]	ENSRNOT00000041732|RGD1561114|ENSRNOG00000052647|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1561114]
rn6_v1_chr16_-_12703961_12703961	32.5306	Sox1	ENSRNOT00000080905|RGD1562508|ENSRNOG00000056463|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1562508]
rn6_v1_chr16_-_12194118_12194118	32.3328	Sox1	ENSRNOT00000071517|RGD1559804|ENSRNOG00000045563|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1559804]
rn6_v1_chr2_-_228665279_228665279	30.74	Sox1	ENSRNOT00000055648|RGD1306519|ENSRNOG00000024928|similar to T-cell activation Rho GTPase-activating protein isoform b [Source:RGD Symbol%3BAcc:1306519]
rn6_v1_chr7_+_18310624_18310624	30.4564	Sox1	ENSRNOT00000075258|Actl9|ENSRNOG00000049571|actin-like 9 [Source:RGD Symbol%3BAcc:1306886]
rn6_v1_chr16_-_12124265_12124265	29.9237	Sox1	ENSRNOT00000080192|AABR07024682.1|ENSRNOG00000055022|
rn6_v1_chr16_-_12742010_12742010	29.5804	Sox1	ENSRNOT00000077513|LOC100911649|ENSRNOG00000051457|ral guanine nucleotide dissociation stimulator-like [Source:RGD Symbol%3BAcc:6491640]
rn6_v1_chr3_+_148082790_148082796	29.327	Sox1	ENSRNOT00000009930|Defb36|ENSRNOG00000007558|defensin beta 36 [Source:RGD Symbol%3BAcc:1564902]	ENSRNOT00000080767|Defb36|ENSRNOG00000007558|defensin beta 36 [Source:RGD Symbol%3BAcc:1564902]
rn6_v1_chr10_-_41491554_41491554	29.1706	Sox1	ENSRNOT00000035759|LOC102552619|ENSRNOG00000027803|uncharacterized LOC102552619 [Source:RGD Symbol%3BAcc:7567332]
rn6_v1_chr20_+_4959294_4959294	29.1696	Sox1	ENSRNOT00000074223|Hspa1l|ENSRNOG00000047966|heat shock protein family A (Hsp70) member 1 like [Source:RGD Symbol%3BAcc:1595925]
rn6_v1_chr19_+_14835822_14835822	25.94	Sox1	ENSRNOT00000072804|1700007B14Rik|ENSRNOG00000046163|RIKEN cDNA 1700007B14 gene [Source:MGI Symbol%3BAcc:MGI:1919081]
rn6_v1_chr16_-_12538117_12538117	25.2742	Sox1	ENSRNOT00000046081|AABR07024718.1|ENSRNOG00000033014|
rn6_v1_chr19_-_36157924_36157924	24.4974	Sox1	ENSRNOT00000072022|AABR07043701.1|ENSRNOG00000050237|
rn6_v1_chr16_+_13050305_13050305	24.3653	Sox1	ENSRNOT00000077388|AABR07024735.1|ENSRNOG00000058290|
rn6_v1_chr16_+_12510827_12510827	24.1939	Sox1	ENSRNOT00000077763|AABR07024716.1|ENSRNOG00000057312|
rn6_v1_chr16_-_12626949_12626949	23.9605	Sox1	ENSRNOT00000077469|AABR07024722.1|ENSRNOG00000057024|
rn6_v1_chr16_-_12662336_12662336	23.762	Sox1	ENSRNOT00000080161|RGD1559508|ENSRNOG00000056897|similar to hypothetical protein 4930474N05 [Source:RGD Symbol%3BAcc:1559508]
rn6_v1_chrX_+_35869538_35869538	23.3926	Sox1	ENSRNOT00000058947|Ppef1|ENSRNOG00000027331|protein phosphatase with EF-hand domain 1 [Source:RGD Symbol%3BAcc:1562772]
rn6_v1_chr3_+_121128368_121128368	17.4337	Sox1	ENSRNOT00000055882|LOC499886|ENSRNOG00000037081|similar to hypothetical protein 4933411G11 [Source:RGD Symbol%3BAcc:1561675]
rn6_v1_chr10_+_53740841_53740841	17.4011	Sox1	ENSRNOT00000004295|Myh2|ENSRNOG00000049695|myosin heavy chain 2 [Source:RGD Symbol%3BAcc:620354]
rn6_v1_chr17_-_15030364_15030364	17.0896	Sox1	ENSRNOT00000044543|Nutm2f|ENSRNOG00000027311|NUT family member 2F [Source:RGD Symbol%3BAcc:1566043]
rn6_v1_chr4_+_70252366_70252366	16.6193	Sox1	ENSRNOT00000073039|Chl1|ENSRNOG00000045771|cell adhesion molecule L1-like [Source:RGD Symbol%3BAcc:620122]
rn6_v1_chr10_+_16635989_16635989	14.9385	Sox1	ENSRNOT00000028155|Nkx2-5|ENSRNOG00000020747|NK2 homeobox 5 [Source:RGD Symbol%3BAcc:620520]
rn6_v1_chr1_+_142136452_142136452	14.1448	Sox1	ENSRNOT00000016445|Hddc3|ENSRNOG00000012236|HD domain containing 3 [Source:RGD Symbol%3BAcc:1311839]
rn6_v1_chr1_+_199449973_199449973	12.1271	Sox1	ENSRNOT00000029994|Trim72|ENSRNOG00000022099|tripartite motif containing 72 [Source:RGD Symbol%3BAcc:1562778]
rn6_v1_chr1_+_148240504_148240504	11.5014	Sox1	ENSRNOT00000085373|LOC100361547|ENSRNOG00000054181|Cytochrome P450%2C family 2%2C subfamily c%2C polypeptide 7-like [Source:RGD Symbol%3BAcc:2319920]
rn6_v1_chr1_-_224533219_224533219	11.0853	Sox1	ENSRNOT00000051289|Ust5r|ENSRNOG00000061890|integral membrane transport protein UST5r [Source:RGD Symbol%3BAcc:620985]
rn6_v1_chr20_+_6869767_6869958	10.3498	Sox1	ENSRNOT00000000631|RGD735065|ENSRNOG00000000524|similar to GI:13385412-like protein splice form I [Source:RGD Symbol%3BAcc:735065]	ENSRNOT00000086330|RGD735065|ENSRNOG00000000524|similar to GI:13385412-like protein splice form I [Source:RGD Symbol%3BAcc:735065]	ENSRNOT00000093188|RGD735065|ENSRNOG00000000524|similar to GI:13385412-like protein splice form I [Source:RGD Symbol%3BAcc:735065]	ENSRNOT00000093736|RGD735065|ENSRNOG00000000524|similar to GI:13385412-like protein splice form I [Source:RGD Symbol%3BAcc:735065]
rn6_v1_chr14_-_21553949_21553949	9.41464	Sox1	ENSRNOT00000031642|Smr3b|ENSRNOG00000001942|submaxillary gland androgen regulated protein 3B [Source:RGD Symbol%3BAcc:3953]
rn6_v1_chr4_-_176231344_176231344	9.11913	Sox1	ENSRNOT00000049154|Slco1a1|ENSRNOG00000036984|solute carrier organic anion transporter family%2C member 1a1 [Source:RGD Symbol%3BAcc:3700]
rn6_v1_chr18_+_52215682_52215682	8.85785	Sox1	ENSRNOT00000037901|Megf10|ENSRNOG00000013674|multiple EGF-like domains 10 [Source:RGD Symbol%3BAcc:735084]
rn6_v1_chr20_+_27129291_27129291	8.71219	Sox1	ENSRNOT00000031053|AABR07044933.1|ENSRNOG00000026813|
rn6_v1_chr11_+_65960277_65960277	8.48878	Sox1	ENSRNOT00000003674|Ndufb4|ENSRNOG00000002721|NADH:ubiquinone oxidoreductase subunit B4 [Source:RGD Symbol%3BAcc:1307072]
rn6_v1_chr14_-_21615488_21615488	7.89678	Sox1	ENSRNOT00000002667|Vcsa2|ENSRNOG00000001945|variable coding sequence A2 [Source:RGD Symbol%3BAcc:3954]
rn6_v1_chr2_+_157453428_157453428	7.50904	Sox1	ENSRNOT00000051494|Lekr1|ENSRNOG00000031247|leucine%2C glutamate and lysine rich 1 [Source:RGD Symbol%3BAcc:1565425]
rn6_v1_chr3_+_63510293_63510293	5.78683	Sox1	ENSRNOT00000058093|Dfnb59|ENSRNOG00000038165|deafness%2C autosomal recessive 59 [Source:RGD Symbol%3BAcc:1587131]
rn6_v1_chr17_-_14637832_14637832	5.61645	Sox1	ENSRNOT00000074323|LOC103690116|ENSRNOG00000046658|osteomodulin [Source:RGD Symbol%3BAcc:9400356]
rn6_v1_chr20_-_556982_556982	5.1541	Sox1	ENSRNOT00000047478|Olr1683|ENSRNOG00000047702|olfactory receptor 1683 [Source:RGD Symbol%3BAcc:1333502]
rn6_v1_chr13_-_61306939_61306939	4.57811	Sox1	ENSRNOT00000086610|Rgs21|ENSRNOG00000056369|regulator of G-protein signaling 21 [Source:RGD Symbol%3BAcc:2320695]
rn6_v1_chr9_-_70374553_70374553	4.52753	Sox1	ENSRNOT00000064447|Dytn|ENSRNOG00000042181|dystrotelin [Source:RGD Symbol%3BAcc:2320917]
rn6_v1_chr15_-_27408258_27408258	4.17248	Sox1	ENSRNOT00000043588|RGD1562558|ENSRNOG00000029613|similar to Cytochrome c%2C somatic [Source:RGD Symbol%3BAcc:1562558]
rn6_v1_chr19_+_22699808_22699808	4.09288	Sox1	ENSRNOT00000023169|RGD1308706|ENSRNOG00000017090|similar to RIKEN cDNA 4921524J17 [Source:RGD Symbol%3BAcc:1308706]
rn6_v1_chr4_-_170810080_170810080	3.97177	Sox1	ENSRNOT00000082312|Wbp11|ENSRNOG00000049593|WW domain binding protein 11 [Source:RGD Symbol%3BAcc:1307911]
rn6_v1_chr1_+_141120166_141120166	3.83855	Sox1	ENSRNOT00000050759|Fanci|ENSRNOG00000016689|Fanconi anemia%2C complementation group I [Source:RGD Symbol%3BAcc:2321863]
rn6_v1_chr8_+_43705216_43705216	3.67933	Sox1	ENSRNOT00000090425|AC115384.1|ENSRNOG00000058613|
rn6_v1_chr4_-_170783725_170783725	3.55701	Sox1	ENSRNOT00000072528|Wbp11|ENSRNOG00000049593|WW domain binding protein 11 [Source:RGD Symbol%3BAcc:1307911]
rn6_v1_chr3_-_10371240_10371240	3.49128	Sox1	ENSRNOT00000012075|Ass1|ENSRNOG00000008837|argininosuccinate synthase 1 [Source:RGD Symbol%3BAcc:2163]
rn6_v1_chr15_+_49069145_49069145	3.26705	Sox1	ENSRNOT00000019487|Scara5|ENSRNOG00000014398|scavenger receptor class A%2C member 5 [Source:RGD Symbol%3BAcc:1306539]
rn6_v1_chr7_+_91833297_91833297	3.16225	Sox1	ENSRNOT00000079792|Slc30a8|ENSRNOG00000004747|solute carrier family 30 member 8 [Source:RGD Symbol%3BAcc:1308282]
rn6_v1_chr4_-_2201749_2201749	3.02263	Sox1	ENSRNOT00000089327|Lmbr1|ENSRNOG00000059589|limb development membrane protein 1 [Source:RGD Symbol%3BAcc:1563910]
rn6_v1_chr3_+_102703487_102703487	3.00589	Sox1	ENSRNOT00000089603|AC121203.2|ENSRNOG00000055449|
rn6_v1_chr3_+_102664391_102664391	2.79999	Sox1	ENSRNOT00000041791|RGD1561276|ENSRNOG00000047700|similar to olfactory receptor Olfr1289 [Source:RGD Symbol%3BAcc:1561276]
rn6_v1_chr1_+_170796271_170796271	2.54562	Sox1	ENSRNOT00000042820|Olr210|ENSRNOG00000029365|olfactory receptor 210 [Source:RGD Symbol%3BAcc:1333691]
rn6_v1_chr7_+_101146820_101146820	2.47056	Sox1	ENSRNOT00000080206|AABR07058124.3|ENSRNOG00000053535|
rn6_v1_chr8_+_23771920_23771920	2.43937	Sox1	ENSRNOT00000020481|Bbs9|ENSRNOG00000015189|Bardet-Biedl syndrome 9 [Source:RGD Symbol%3BAcc:1308472]
rn6_v1_chr17_+_66446569_66446569	2.31938	Sox1	ENSRNOT00000070825|Heatr1|ENSRNOG00000047594|HEAT repeat containing 1 [Source:RGD Symbol%3BAcc:1564769]
rn6_v1_chr17_-_15478343_15478343	2.29389	Sox1	ENSRNOT00000078029|Omd|ENSRNOG00000039560|osteomodulin [Source:RGD Symbol%3BAcc:621818]
rn6_v1_chr20_+_1124169_1124169	2.15415	Sox1	ENSRNOT00000072544|LOC100910894|ENSRNOG00000050769|olfactory receptor 14J1-like [Source:RGD Symbol%3BAcc:6495795]
rn6_v1_chr7_-_12569110_12569143	2.02577	Sox1	ENSRNOT00000093446|Wdr18|ENSRNOG00000012379|WD repeat domain 18 [Source:RGD Symbol%3BAcc:1310646]	ENSRNOT00000016733|Wdr18|ENSRNOG00000012379|WD repeat domain 18 [Source:RGD Symbol%3BAcc:1310646]
rn6_v1_chr7_+_144080614_144080614	2.02435	Sox1	ENSRNOT00000077687|Pcbp2|ENSRNOG00000036852|poly(rC) binding protein 2 [Source:RGD Symbol%3BAcc:1309626]
rn6_v1_chr20_+_1012054_1012054	1.95793	Sox1	ENSRNOT00000073732|Olr1704|ENSRNOG00000048262|olfactory receptor 1704 [Source:RGD Symbol%3BAcc:1334388]
rn6_v1_chr3_+_102723402_102723402	1.66699	Sox1	ENSRNOT00000040298|Olr765|ENSRNOG00000046942|olfactory receptor 765 [Source:RGD Symbol%3BAcc:1334032]
rn6_v1_chr2_+_193483793_193483793	1.34344	Sox1	ENSRNOT00000074518|Flg2|ENSRNOG00000050967|filaggrin family member 2 [Source:RGD Symbol%3BAcc:1566121]
rn6_v1_chr10_-_84920886_84920886	0.931423	Sox1	ENSRNOT00000068083|Sp2|ENSRNOG00000010492|Sp2 transcription factor [Source:RGD Symbol%3BAcc:1592078]
rn6_v1_chr18_-_62476700_62476700	0.696492	Sox1	ENSRNOT00000048429|Cycs|ENSRNOG00000032885|cytochrome c%2C somatic [Source:RGD Symbol%3BAcc:2451]
rn6_v1_chr13_-_84694575_84694575	0.37363	Sox1	ENSRNOT00000066609|Fmo13|ENSRNOG00000043014|flavin-containing monooxygenase 13 [Source:RGD Symbol%3BAcc:1559819]
rn6_v1_chr10_-_109827143_109827143	0.195416	Sox1	ENSRNOT00000054948|Myadml2|ENSRNOG00000036681|myeloid-associated differentiation marker-like 2 [Source:RGD Symbol%3BAcc:1311499]
rn6_v1_chr10_+_39066716_39066716	0.109022	Sox1	ENSRNOT00000010729|Il5|ENSRNOG00000008111|interleukin 5 [Source:RGD Symbol%3BAcc:2900]
