Illumina Body Map 2: averaged replicates
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
---|---|
adipose.rep01 | adipose |
adipose.rep02 | adipose |
adrenal.rep01 | adrenal |
adrenal.rep02 | adrenal |
blood.rep01 | blood |
blood.rep02 | blood |
brain.rep01 | brain |
brain.rep02 | brain |
breast.rep01 | breast |
breast.rep02 | breast |
colon.rep01 | colon |
colon.rep02 | colon |
heart.rep01 | heart |
heart.rep02 | heart |
kidney.rep01 | kidney |
kidney.rep02 | kidney |
liver.rep01 | liver |
liver.rep02 | liver |
lung.rep01 | lung |
lung.rep02 | lung |
lymph.rep01 | lymph |
lymph.rep02 | lymph |
ovary.rep01 | ovary |
ovary.rep02 | ovary |
prostate.rep01 | prostate |
prostate.rep02 | prostate |
skeletal_muscle.rep01 | skeletal_muscle |
skeletal_muscle.rep02 | skeletal_muscle |
testes.rep01 | testis |
testes.rep02 | testis |
thyroid.rep01 | thyroid |
thyroid.rep02 | thyroid |
Motif name | Z-value | Associated genes | Profile | Logo |
---|---|---|---|---|
HNF1A_HNF1B | 12.92 |
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RFX3_RFX2 | 10.18 |
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MEF2D_MEF2A | 7.99 |
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RFX7_RFX4_RFX1 | 7.99 |
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SPI1 | 7.25 |
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POU5F1_POU2F3 | 7.16 |
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SPIB | 6.88 |
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REST | 6.59 |
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TEAD3_TEAD1 | 6.45 |
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MEF2C | 6.41 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.