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Illumina Body Map 2: averaged replicates

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Results for AUGUGCC

Z-value: 0.48

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miRNA associated with seed AUGUGCC

NamemiRBASE accession
hsa-miR-455-5p
MIMAT0003150

Activity profile of AUGUGCC motif

Sorted Z-values of AUGUGCC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr6_+_89790490 0.72 ENST00000336032.3
PNRC1
proline-rich nuclear receptor coactivator 1
chr5_+_82767284 0.68 ENST00000265077.3
VCAN
versican
chr1_+_101702417 0.68 ENST00000305352.6
S1PR1
sphingosine-1-phosphate receptor 1
chr10_+_20105157 0.66 ENST00000377242.3
ENST00000377252.4
PLXDC2
plexin domain containing 2
chr8_-_82024290 0.59 ENST00000220597.4
PAG1
phosphoprotein associated with glycosphingolipid microdomains 1
chr9_-_74980113 0.58 ENST00000376962.5
ENST00000376960.4
ENST00000237937.3
ZFAND5
zinc finger, AN1-type domain 5
chr18_-_74207146 0.52 ENST00000443185.2
ZNF516
zinc finger protein 516
chr4_-_185395672 0.52 ENST00000393593.3
IRF2
interferon regulatory factor 2
chr12_+_62654119 0.48 ENST00000353364.3
ENST00000549523.1
ENST00000280377.5
USP15
ubiquitin specific peptidase 15
chr22_+_40573921 0.47 ENST00000454349.2
ENST00000335727.9
TNRC6B
trinucleotide repeat containing 6B
chr11_-_128392085 0.44 ENST00000526145.2
ENST00000531611.1
ENST00000319397.6
ENST00000345075.4
ENST00000535549.1
ETS1
v-ets avian erythroblastosis virus E26 oncogene homolog 1
chr10_-_15210666 0.41 ENST00000378165.4
NMT2
N-myristoyltransferase 2
chrX_+_41192595 0.39 ENST00000399959.2
DDX3X
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr20_-_60640866 0.38 ENST00000252996.4
TAF4
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
chr12_-_49449107 0.36 ENST00000301067.7
KMT2D
lysine (K)-specific methyltransferase 2D
chrX_+_46433193 0.36 ENST00000276055.3
CHST7
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7
chr1_-_173991434 0.35 ENST00000367696.2
RC3H1
ring finger and CCCH-type domains 1
chr20_-_48770174 0.33 ENST00000341698.2
TMEM189-UBE2V1
TMEM189-UBE2V1 readthrough
chr6_+_45389893 0.33 ENST00000371432.3
RUNX2
runt-related transcription factor 2
chr14_-_90085458 0.31 ENST00000345097.4
ENST00000555855.1
ENST00000555353.1
FOXN3
forkhead box N3
chr22_+_39077947 0.29 ENST00000216034.4
TOMM22
translocase of outer mitochondrial membrane 22 homolog (yeast)
chr7_+_102715315 0.29 ENST00000428183.2
ENST00000323716.3
ENST00000441711.2
ENST00000454559.1
ENST00000425331.1
ENST00000541300.1
ARMC10
armadillo repeat containing 10
chr12_-_57824739 0.29 ENST00000347140.3
ENST00000402412.1
R3HDM2
R3H domain containing 2
chr11_-_59436453 0.29 ENST00000300146.9
PATL1
protein associated with topoisomerase II homolog 1 (yeast)
chr4_+_39699664 0.28 ENST00000261427.5
ENST00000510934.1
ENST00000295963.6
UBE2K
ubiquitin-conjugating enzyme E2K
chr18_+_13218769 0.28 ENST00000399848.3
ENST00000361205.4
LDLRAD4
low density lipoprotein receptor class A domain containing 4
chr10_-_94003003 0.27 ENST00000412050.4
CPEB3
cytoplasmic polyadenylation element binding protein 3
chr5_-_175964366 0.27 ENST00000274811.4
RNF44
ring finger protein 44
chr1_+_212458834 0.26 ENST00000261461.2
PPP2R5A
protein phosphatase 2, regulatory subunit B', alpha
chr12_+_94542459 0.26 ENST00000258526.4
PLXNC1
plexin C1
chr12_-_81331697 0.25 ENST00000552864.1
LIN7A
lin-7 homolog A (C. elegans)
chr7_-_155604967 0.24 ENST00000297261.2
SHH
sonic hedgehog
chr1_-_70671216 0.24 ENST00000370952.3
LRRC40
leucine rich repeat containing 40
chr15_+_63796779 0.24 ENST00000561442.1
ENST00000560070.1
ENST00000540797.1
ENST00000380324.3
ENST00000268049.7
ENST00000536001.1
ENST00000539772.1
USP3
ubiquitin specific peptidase 3
chr3_+_31574189 0.24 ENST00000295770.2
STT3B
STT3B, subunit of the oligosaccharyltransferase complex (catalytic)
chr1_+_27022485 0.24 ENST00000324856.7
ARID1A
AT rich interactive domain 1A (SWI-like)
chr3_-_12705600 0.23 ENST00000542177.1
ENST00000442415.2
ENST00000251849.4
RAF1
v-raf-1 murine leukemia viral oncogene homolog 1
chr12_+_12870055 0.23 ENST00000228872.4
CDKN1B
cyclin-dependent kinase inhibitor 1B (p27, Kip1)
chr17_+_30264014 0.22 ENST00000322652.5
ENST00000580398.1
SUZ12
SUZ12 polycomb repressive complex 2 subunit
chr2_+_60983361 0.21 ENST00000238714.3
PAPOLG
poly(A) polymerase gamma
chr7_+_39989611 0.21 ENST00000181839.4
CDK13
cyclin-dependent kinase 13
chr2_-_38978492 0.21 ENST00000409276.1
ENST00000446327.2
ENST00000313117.6
SRSF7
serine/arginine-rich splicing factor 7
chr17_-_76356148 0.21 ENST00000587578.1
ENST00000330871.2
SOCS3
suppressor of cytokine signaling 3
chr15_-_56535464 0.21 ENST00000559447.2
ENST00000422057.1
ENST00000317318.6
ENST00000423270.1
RFX7
regulatory factor X, 7
chr12_+_113659234 0.21 ENST00000551096.1
ENST00000551099.1
ENST00000335509.6
ENST00000552897.1
ENST00000550785.1
ENST00000549279.1
TPCN1
two pore segment channel 1
chr13_-_50367057 0.20 ENST00000261667.3
KPNA3
karyopherin alpha 3 (importin alpha 4)
chr1_-_10856694 0.19 ENST00000377022.3
ENST00000344008.5
CASZ1
castor zinc finger 1
chr19_-_31840438 0.17 ENST00000240587.4
TSHZ3
teashirt zinc finger homeobox 3
chr7_+_23338819 0.17 ENST00000466681.1
MALSU1
mitochondrial assembly of ribosomal large subunit 1
chr20_+_34894247 0.17 ENST00000373913.3
DLGAP4
discs, large (Drosophila) homolog-associated protein 4
chr2_+_85198216 0.17 ENST00000456682.1
ENST00000409785.4
KCMF1
potassium channel modulatory factor 1
chr20_-_48770244 0.16 ENST00000371650.5
ENST00000371652.4
ENST00000557021.1
TMEM189
transmembrane protein 189
chr17_-_5389477 0.14 ENST00000572834.1
ENST00000570848.1
ENST00000571971.1
ENST00000158771.4
DERL2
derlin 2
chr8_-_8751068 0.14 ENST00000276282.6
MFHAS1
malignant fibrous histiocytoma amplified sequence 1
chr8_+_61429416 0.14 ENST00000262646.7
ENST00000531289.1
RAB2A
RAB2A, member RAS oncogene family
chr14_-_69619823 0.13 ENST00000341516.5
DCAF5
DDB1 and CUL4 associated factor 5
chr2_-_202316260 0.12 ENST00000332624.3
TRAK2
trafficking protein, kinesin binding 2
chr1_+_193091080 0.12 ENST00000367435.3
CDC73
cell division cycle 73
chr20_-_48729670 0.12 ENST00000371657.5
UBE2V1
ubiquitin-conjugating enzyme E2 variant 1
chr17_-_1420182 0.11 ENST00000421807.2
INPP5K
inositol polyphosphate-5-phosphatase K
chr6_-_146135880 0.11 ENST00000237281.4
FBXO30
F-box protein 30
chr10_+_112679301 0.10 ENST00000265277.5
ENST00000369452.4
SHOC2
soc-2 suppressor of clear homolog (C. elegans)
chr1_-_115053781 0.10 ENST00000358465.2
ENST00000369543.2
TRIM33
tripartite motif containing 33
chr11_+_18720316 0.09 ENST00000280734.2
TMEM86A
transmembrane protein 86A
chr9_+_95087766 0.09 ENST00000375587.3
CENPP
centromere protein P
chr2_+_106361333 0.08 ENST00000233154.4
ENST00000451463.2
NCK2
NCK adaptor protein 2
chr21_-_16437255 0.08 ENST00000400199.1
ENST00000400202.1
NRIP1
nuclear receptor interacting protein 1
chr12_+_124069070 0.08 ENST00000262225.3
ENST00000438031.2
TMED2
transmembrane emp24 domain trafficking protein 2
chr17_+_27717415 0.07 ENST00000583121.1
ENST00000261716.3
TAOK1
TAO kinase 1
chr4_-_170924888 0.07 ENST00000502832.1
ENST00000393704.3
MFAP3L
microfibrillar-associated protein 3-like
chrX_+_40944871 0.06 ENST00000378308.2
ENST00000324545.8
USP9X
ubiquitin specific peptidase 9, X-linked
chr20_+_19867150 0.06 ENST00000255006.6
RIN2
Ras and Rab interactor 2
chr19_-_33166045 0.06 ENST00000586693.3
ENST00000587352.1
ENST00000586463.1
ENST00000306065.4
ANKRD27
ankyrin repeat domain 27 (VPS9 domain)
chr14_-_21737610 0.05 ENST00000320084.7
ENST00000449098.1
ENST00000336053.6
HNRNPC
heterogeneous nuclear ribonucleoprotein C (C1/C2)
chr4_-_48908805 0.05 ENST00000273860.4
OCIAD2
OCIA domain containing 2
chr12_-_100536608 0.05 ENST00000356828.3
ENST00000279907.7
UHRF1BP1L
UHRF1 binding protein 1-like
chr13_-_99630233 0.05 ENST00000376460.1
ENST00000442173.1
DOCK9
dedicator of cytokinesis 9
chr4_+_41937131 0.04 ENST00000504986.1
ENST00000508448.1
ENST00000513702.1
ENST00000325094.5
TMEM33
transmembrane protein 33
chr18_+_43914159 0.04 ENST00000588679.1
ENST00000269439.7
ENST00000543885.1
RNF165
ring finger protein 165
chr4_-_42154895 0.04 ENST00000502486.1
ENST00000504360.1
BEND4
BEN domain containing 4
chr13_-_52027134 0.04 ENST00000311234.4
ENST00000425000.1
ENST00000463928.1
ENST00000442263.3
ENST00000398119.2
INTS6
integrator complex subunit 6
chr5_-_76788317 0.04 ENST00000296679.4
WDR41
WD repeat domain 41
chrX_+_44732757 0.03 ENST00000377967.4
ENST00000536777.1
ENST00000382899.4
ENST00000543216.1
KDM6A
lysine (K)-specific demethylase 6A
chr5_+_141488070 0.03 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr10_-_105615164 0.03 ENST00000355946.2
ENST00000369774.4
SH3PXD2A
SH3 and PX domains 2A
chr12_+_104458235 0.02 ENST00000229330.4
HCFC2
host cell factor C2
chr15_+_59279851 0.02 ENST00000348370.4
ENST00000434298.1
ENST00000559160.1
RNF111
ring finger protein 111
chr3_-_176914238 0.02 ENST00000430069.1
ENST00000428970.1
TBL1XR1
transducin (beta)-like 1 X-linked receptor 1
chr4_-_149365827 0.01 ENST00000344721.4
NR3C2
nuclear receptor subfamily 3, group C, member 2
chr5_-_41510656 0.01 ENST00000377801.3
PLCXD3
phosphatidylinositol-specific phospholipase C, X domain containing 3
chr1_-_118472216 0.00 ENST00000369443.5
GDAP2
ganglioside induced differentiation associated protein 2

Network of associatons between targets according to the STRING database.

First level regulatory network of AUGUGCC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0003245 cardiac muscle tissue growth involved in heart morphogenesis(GO:0003245)
0.1 0.4 GO:0018008 N-terminal peptidyl-glycine N-myristoylation(GO:0018008)
0.1 0.5 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.1 0.3 GO:1900365 positive regulation of mRNA polyadenylation(GO:1900365)
0.1 0.2 GO:0060738 intein-mediated protein splicing(GO:0016539) protein splicing(GO:0030908) positive regulation of immature T cell proliferation in thymus(GO:0033092) right lung development(GO:0060458) primary prostatic bud elongation(GO:0060516) epithelial-mesenchymal signaling involved in prostate gland development(GO:0060738)
0.1 0.7 GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA(GO:0031087)
0.1 0.4 GO:0001555 oocyte growth(GO:0001555)
0.1 0.4 GO:0030578 PML body organization(GO:0030578)
0.0 0.4 GO:0071651 positive regulation of chemokine (C-C motif) ligand 5 production(GO:0071651)
0.0 0.2 GO:0043686 co-translational protein modification(GO:0043686)
0.0 0.2 GO:0090071 negative regulation of ribosome biogenesis(GO:0090071)
0.0 0.2 GO:0060708 spongiotrophoblast differentiation(GO:0060708)
0.0 0.1 GO:0098939 dendritic transport of mitochondrion(GO:0098939) anterograde dendritic transport of mitochondrion(GO:0098972)
0.0 0.1 GO:0034402 recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex(GO:0034402)
0.0 0.3 GO:0090219 negative regulation of lipid kinase activity(GO:0090219)
0.0 0.4 GO:0061470 T follicular helper cell differentiation(GO:0061470)
0.0 0.2 GO:0006344 optic cup formation involved in camera-type eye development(GO:0003408) maintenance of chromatin silencing(GO:0006344)
0.0 0.2 GO:1903361 protein localization to basolateral plasma membrane(GO:1903361)
0.0 0.1 GO:0001543 ovarian follicle rupture(GO:0001543)
0.0 0.3 GO:0045040 protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.3 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.0 0.3 GO:0002051 osteoblast fate commitment(GO:0002051)
0.0 0.3 GO:0010994 regulation of ubiquitin homeostasis(GO:0010993) free ubiquitin chain polymerization(GO:0010994)
0.0 0.7 GO:0030208 dermatan sulfate biosynthetic process(GO:0030208)
0.0 0.5 GO:0045974 miRNA mediated inhibition of translation(GO:0035278) negative regulation of translation, ncRNA-mediated(GO:0040033) regulation of translation, ncRNA-mediated(GO:0045974) regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) positive regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060213)
0.0 0.2 GO:0060770 negative regulation of epithelial cell proliferation involved in prostate gland development(GO:0060770)
0.0 0.1 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.0 0.1 GO:2001151 regulation of renal water transport(GO:2001151) positive regulation of renal water transport(GO:2001153)
0.0 0.3 GO:0010991 negative regulation of SMAD protein complex assembly(GO:0010991)
0.0 0.8 GO:0003016 respiratory system process(GO:0003016)
0.0 0.0 GO:1903371 regulation of endoplasmic reticulum tubular network organization(GO:1903371)
0.0 0.1 GO:0036493 positive regulation of translation in response to endoplasmic reticulum stress(GO:0036493)
0.0 0.1 GO:0035544 negative regulation of SNARE complex assembly(GO:0035544)
0.0 0.2 GO:0071550 death-inducing signaling complex assembly(GO:0071550)
0.0 0.4 GO:0030206 chondroitin sulfate biosynthetic process(GO:0030206)
0.0 0.1 GO:0070862 negative regulation of protein exit from endoplasmic reticulum(GO:0070862) negative regulation of retrograde protein transport, ER to cytosol(GO:1904153)
0.0 0.3 GO:0097094 craniofacial suture morphogenesis(GO:0097094)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0002945 cyclin K-CDK13 complex(GO:0002945)
0.0 0.3 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.4 GO:0044666 MLL3/4 complex(GO:0044666)
0.0 0.1 GO:0035370 UBC13-UEV1A complex(GO:0035370)
0.0 0.2 GO:0001739 sex chromatin(GO:0001739)
0.0 0.4 GO:0033276 transcription factor TFTC complex(GO:0033276)
0.0 0.2 GO:0097025 MPP7-DLG1-LIN7 complex(GO:0097025)
0.0 0.2 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.4 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.1 GO:0005785 signal recognition particle receptor complex(GO:0005785)
0.0 0.4 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.3 GO:0032433 filopodium tip(GO:0032433)
0.0 0.2 GO:0070938 contractile ring(GO:0070938)
0.0 0.2 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0004379 glycylpeptide N-tetradecanoyltransferase activity(GO:0004379) myristoyltransferase activity(GO:0019107)
0.1 0.3 GO:0034046 poly(G) binding(GO:0034046)
0.1 0.5 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.0 0.7 GO:0038036 sphingosine-1-phosphate receptor activity(GO:0038036)
0.0 0.4 GO:0001517 N-acetylglucosamine 6-O-sulfotransferase activity(GO:0001517)
0.0 1.0 GO:0035613 RNA stem-loop binding(GO:0035613)
0.0 0.2 GO:0072345 NAADP-sensitive calcium-release channel activity(GO:0072345)
0.0 0.2 GO:0043237 laminin-1 binding(GO:0043237)
0.0 0.2 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.0 0.3 GO:0015266 protein channel activity(GO:0015266)
0.0 0.4 GO:0017162 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075) aryl hydrocarbon receptor binding(GO:0017162)
0.0 0.6 GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity(GO:0005068)
0.0 0.2 GO:0097016 L27 domain binding(GO:0097016)
0.0 0.2 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.2 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.7 GO:0005540 hyaluronic acid binding(GO:0005540)
0.0 0.1 GO:0042577 lipid phosphatase activity(GO:0042577)
0.0 0.2 GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
0.0 0.4 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.3 GO:0034450 ubiquitin-ubiquitin ligase activity(GO:0034450)
0.0 0.3 GO:0017154 semaphorin receptor activity(GO:0017154)
0.0 0.2 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 PID S1P META PATHWAY Sphingosine 1-phosphate (S1P) pathway
0.0 0.7 PID TOLL ENDOGENOUS PATHWAY Endogenous TLR signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 1.0 REACTOME CHONDROITIN SULFATE BIOSYNTHESIS Genes involved in Chondroitin sulfate biosynthesis
0.0 0.3 REACTOME TRAF6 MEDIATED IRF7 ACTIVATION IN TLR7 8 OR 9 SIGNALING Genes involved in TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling
0.0 0.6 REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS Genes involved in Phosphorylation of CD3 and TCR zeta chains
0.0 0.2 REACTOME RAF MAP KINASE CASCADE Genes involved in RAF/MAP kinase cascade
0.0 0.5 REACTOME TRAF6 MEDIATED IRF7 ACTIVATION Genes involved in TRAF6 mediated IRF7 activation
0.0 0.3 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0 0.5 REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION Genes involved in Pre-NOTCH Transcription and Translation
0.0 0.2 REACTOME IL 6 SIGNALING Genes involved in Interleukin-6 signaling