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Illumina Body Map 2: averaged replicates

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Results for CCAGCAU

Z-value: 0.43

Motif logo

miRNA associated with seed CCAGCAU

NamemiRBASE accession
MIMAT0000763

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Promoter Log-likelihood Transcript Gene Gene Info
chr15_+_85359911 0.53 ENST00000258888.5
alpha-kinase 3
chr16_-_51185149 0.51 ENST00000566102.1
ENST00000541611.1
spalt-like transcription factor 1
chr17_+_43971643 0.49 ENST00000344290.5
ENST00000262410.5
ENST00000351559.5
ENST00000340799.5
ENST00000535772.1
ENST00000347967.5
microtubule-associated protein tau
chr12_-_54982420 0.49 ENST00000257905.8
protein phosphatase 1, regulatory (inhibitor) subunit 1A
chr5_-_45696253 0.37 ENST00000303230.4
hyperpolarization activated cyclic nucleotide-gated potassium channel 1
chr22_-_44258360 0.35 ENST00000330884.4
ENST00000249130.5
sulfotransferase family 4A, member 1
chr3_-_179754706 0.29 ENST00000465751.1
ENST00000467460.1
peroxisomal biogenesis factor 5-like
chr4_-_168155730 0.29 ENST00000502330.1
ENST00000357154.3
sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3
chr6_+_16238786 0.28 ENST00000259727.4
guanosine monophosphate reductase
chr10_-_91403625 0.27 ENST00000322191.6
ENST00000342512.3
ENST00000371774.2
pantothenate kinase 1
chr1_+_109792641 0.26 ENST00000271332.3
cadherin, EGF LAG seven-pass G-type receptor 2
chr3_+_49591881 0.23 ENST00000296452.4
bassoon presynaptic cytomatrix protein
chr1_-_40137710 0.23 ENST00000235628.1
5'-nucleotidase, cytosolic IA
chr6_-_116601044 0.23 ENST00000368608.3
TSPY-like 1
chr1_+_61547894 0.21 ENST00000403491.3
nuclear factor I/A
chr12_-_113574028 0.21 ENST00000546530.1
ENST00000261729.5
RAS protein activator like 1 (GAP1 like)
chr5_+_143584814 0.21 ENST00000507359.3
potassium channel tetramerization domain containing 16
chr5_-_36152031 0.20 ENST00000296603.4
LMBR1 domain containing 2
chrX_-_107975917 0.19 ENST00000563887.1
Uncharacterized protein
chr11_+_113930291 0.18 ENST00000335953.4
zinc finger and BTB domain containing 16
chr11_-_129062093 0.18 ENST00000310343.9
Rho GTPase activating protein 32
chr8_-_124553437 0.18 ENST00000517956.1
ENST00000443022.2
F-box protein 32
chrX_+_49126294 0.17 ENST00000466508.1
ENST00000438316.1
ENST00000055335.6
ENST00000495799.1
protein phosphatase 1, regulatory subunit 3F
chr2_-_183731882 0.17 ENST00000295113.4
frizzled-related protein
chr20_-_41818373 0.17 ENST00000373187.1
ENST00000356100.2
ENST00000373184.1
ENST00000373190.1
protein tyrosine phosphatase, receptor type, T
chr2_-_2334888 0.17 ENST00000428368.2
ENST00000399161.2
myelin transcription factor 1-like
chr6_+_72596604 0.16 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
regulating synaptic membrane exocytosis 1
chr6_-_2634820 0.16 ENST00000296847.3
chromosome 6 open reading frame 195
chr1_+_70034081 0.16 ENST00000310961.5
ENST00000370958.1
leucine rich repeat containing 7
chr2_-_152955537 0.16 ENST00000201943.5
ENST00000539935.1
calcium channel, voltage-dependent, beta 4 subunit
chr9_+_140032842 0.15 ENST00000371561.3
ENST00000315048.3
glutamate receptor, ionotropic, N-methyl D-aspartate 1
chr17_+_11144580 0.15 ENST00000441885.3
ENST00000432116.3
ENST00000409168.3
shisa family member 6
chr6_-_146135880 0.15 ENST00000237281.4
F-box protein 30
chr1_-_51425902 0.15 ENST00000396153.2
Fas (TNFRSF6) associated factor 1
chr5_+_43602750 0.15 ENST00000505678.2
ENST00000512422.1
ENST00000264663.5
nicotinamide nucleotide transhydrogenase
chr9_-_111929560 0.14 ENST00000561981.2
ferric-chelate reductase 1-like
chr5_+_175223313 0.14 ENST00000359546.4
complexin 2
chr2_-_166930131 0.14 ENST00000303395.4
ENST00000409050.1
ENST00000423058.2
ENST00000375405.3
sodium channel, voltage-gated, type I, alpha subunit
chr9_+_124413873 0.14 ENST00000408936.3
DAB2 interacting protein
chr1_+_164528866 0.14 ENST00000420696.2
pre-B-cell leukemia homeobox 1
chr5_+_134240800 0.13 ENST00000512783.1
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
chr3_-_9291063 0.13 ENST00000383836.3
SLIT-ROBO Rho GTPase activating protein 3
chr4_-_142053952 0.13 ENST00000515673.2
ring finger protein 150
chr1_+_229440129 0.13 ENST00000366688.3
S-phase response (cyclin related)
chr12_+_113229737 0.13 ENST00000551052.1
ENST00000415485.3
rabphilin 3A homolog (mouse)
chr10_-_118502070 0.12 ENST00000369209.3
heat shock 70kDa protein 12A
chr9_+_129567282 0.12 ENST00000449886.1
ENST00000373464.4
ENST00000450858.1
zinc finger and BTB domain containing 43
chr6_+_37787262 0.11 ENST00000287218.4
zinc finger, AN1-type domain 3
chr11_+_111473108 0.11 ENST00000304987.3
salt-inducible kinase 2
chr17_-_10741762 0.10 ENST00000580256.2
phosphoinositide-interacting regulator of transient receptor potential channels
chr3_+_100428268 0.10 ENST00000240851.4
TRK-fused gene
chr15_+_73976545 0.09 ENST00000318443.5
ENST00000537340.2
ENST00000318424.5
CD276 molecule
chr4_+_48018781 0.09 ENST00000295461.5
NIPA-like domain containing 1
chr1_-_51763661 0.09 ENST00000530004.1
tetratricopeptide repeat domain 39A
chr17_+_46125707 0.09 ENST00000584137.1
ENST00000362042.3
ENST00000585291.1
ENST00000357480.5
nuclear factor, erythroid 2-like 1
chr3_-_134093395 0.09 ENST00000249883.5
angiomotin like 2
chr14_+_65171099 0.09 ENST00000247226.7
pleckstrin homology domain containing, family G (with RhoGef domain) member 3
chr10_-_75634260 0.09 ENST00000372765.1
ENST00000351293.3
calcium/calmodulin-dependent protein kinase II gamma
chr12_-_10875831 0.08 ENST00000279550.7
ENST00000228251.4
Y box binding protein 3
chr11_+_4116005 0.08 ENST00000300738.5
ribonucleotide reductase M1
chr3_-_28390581 0.08 ENST00000479665.1
5-azacytidine induced 2
chr19_-_56092187 0.08 ENST00000325421.4
ENST00000592239.1
zinc finger protein 579
chr10_-_105615164 0.08 ENST00000355946.2
ENST00000369774.4
SH3 and PX domains 2A
chr7_-_14942944 0.08 ENST00000403951.2
diacylglycerol kinase, beta 90kDa
chr4_+_41992489 0.07 ENST00000264451.7
solute carrier family 30 (zinc transporter), member 9
chr8_+_21915368 0.07 ENST00000265800.5
ENST00000517418.1
dematin actin binding protein
chr18_-_31803435 0.07 ENST00000589544.1
ENST00000269185.4
ENST00000261592.5
nucleolar protein 4
chr2_-_220094294 0.07 ENST00000436856.1
ENST00000428226.1
ENST00000409422.1
ENST00000431715.1
ENST00000457841.1
ENST00000439812.1
ENST00000361242.4
ENST00000396761.2
autophagy related 9A
chr7_-_87849340 0.07 ENST00000419179.1
ENST00000265729.2
sorcin
chr17_-_40950698 0.07 ENST00000328434.7
cytochrome c oxidase assembly factor 3
chr11_-_73309228 0.07 ENST00000356467.4
ENST00000064778.4
family with sequence similarity 168, member A
chr8_+_77593448 0.07 ENST00000521891.2
zinc finger homeobox 4
chr5_+_140560980 0.07 ENST00000361016.2
protocadherin beta 16
chr2_+_210444142 0.07 ENST00000360351.4
ENST00000361559.4
microtubule-associated protein 2
chr10_-_94003003 0.07 ENST00000412050.4
cytoplasmic polyadenylation element binding protein 3
chr2_-_69870835 0.06 ENST00000409085.4
ENST00000406297.3
AP2 associated kinase 1
chr5_+_141488070 0.06 ENST00000253814.4
Nedd4 family interacting protein 1
chr2_-_152684977 0.06 ENST00000428992.2
ENST00000295087.8
ADP-ribosylation factor-like 5A
chr1_-_205091115 0.06 ENST00000264515.6
ENST00000367164.1
retinoblastoma binding protein 5
chr11_-_115375107 0.06 ENST00000545380.1
ENST00000452722.3
ENST00000537058.1
ENST00000536727.1
ENST00000542447.2
ENST00000331581.6
cell adhesion molecule 1
chr4_-_149365827 0.06 ENST00000344721.4
nuclear receptor subfamily 3, group C, member 2
chr8_-_98290087 0.06 ENST00000322128.3
TSPY-like 5
chrX_-_152864632 0.06 ENST00000406277.2
family with sequence similarity 58, member A
chr4_-_153457197 0.05 ENST00000281708.4
F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
chr1_-_154531095 0.05 ENST00000292211.4
ubiquitin-conjugating enzyme E2Q family member 1
chr7_-_156803329 0.05 ENST00000252971.6
motor neuron and pancreas homeobox 1
chr9_+_35749203 0.05 ENST00000456972.2
ENST00000378078.4
RGP1 retrograde golgi transport homolog (S. cerevisiae)
chr1_+_244214577 0.05 ENST00000358704.4
zinc finger and BTB domain containing 18
chr22_-_44894178 0.05 ENST00000341255.3
leucine zipper, down-regulated in cancer 1-like
chr7_+_139026057 0.05 ENST00000541515.3
LUC7-like 2 (S. cerevisiae)
chr18_-_72921303 0.05 ENST00000322342.3
zinc binding alcohol dehydrogenase domain containing 2
chr14_+_23775971 0.05 ENST00000250405.5
BCL2-like 2
chr1_+_201798269 0.05 ENST00000361565.4
importin 9
chr16_-_69419871 0.05 ENST00000603068.1
ENST00000254942.3
ENST00000567296.2
telomeric repeat binding factor 2
chr2_-_101767715 0.05 ENST00000376840.4
ENST00000409318.1
TBC1 domain family, member 8 (with GRAM domain)
chr14_-_36989427 0.05 ENST00000354822.5
NK2 homeobox 1
chr19_+_45754505 0.04 ENST00000262891.4
ENST00000300843.4
MAP/microtubule affinity-regulating kinase 4
chr12_-_4647606 0.04 ENST00000261250.3
ENST00000541014.1
ENST00000545746.1
ENST00000542080.1
chromosome 12 open reading frame 4
chr19_-_38210622 0.04 ENST00000591664.1
ENST00000355202.4
zinc finger protein 607
chr5_+_158690089 0.04 ENST00000296786.6
ubiquitin-like domain containing CTD phosphatase 1
chr1_+_26438289 0.04 ENST00000374271.4
ENST00000374269.1
PDLIM1 interacting kinase 1 like
chr9_-_14693417 0.04 ENST00000380916.4
zinc finger, DHHC-type containing 21
chr3_-_71774516 0.04 ENST00000425534.3
eukaryotic translation initiation factor 4E family member 3
chr9_-_123964114 0.04 ENST00000373840.4
RAB14, member RAS oncogene family
chr6_-_36304660 0.03 ENST00000437635.2
chromosome 6 open reading frame 222
chr11_-_10562710 0.03 ENST00000528665.1
ENST00000265981.2
ring finger protein 141
chr1_-_78148324 0.03 ENST00000370801.3
ENST00000433749.1
zinc finger, ZZ-type containing 3
chr17_-_4269768 0.03 ENST00000396981.2
ubiquitin-conjugating enzyme E2G 1
chr10_+_102295616 0.03 ENST00000299163.6
hypoxia inducible factor 1, alpha subunit inhibitor
chr1_+_113010056 0.03 ENST00000369686.5
wingless-type MMTV integration site family, member 2B
chr20_+_47538357 0.03 ENST00000371917.4
ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
chr1_+_153606513 0.03 ENST00000368694.3
chromatin target of PRMT1
chr10_-_100995540 0.03 ENST00000370546.1
ENST00000404542.1
heparanase 2
chr2_+_48010221 0.03 ENST00000234420.5
mutS homolog 6
chr2_+_113239710 0.03 ENST00000233336.6
tubulin tyrosine ligase
chr3_-_142166904 0.03 ENST00000264951.4
5'-3' exoribonuclease 1
chr16_-_77468945 0.03 ENST00000282849.5
ADAM metallopeptidase with thrombospondin type 1 motif, 18
chr16_+_67063036 0.03 ENST00000290858.6
ENST00000564034.1
core-binding factor, beta subunit
chr2_-_85555385 0.03 ENST00000377386.3
trans-golgi network protein 2
chr6_-_116575226 0.02 ENST00000420283.1
TSPY-like 4
chr5_-_107006596 0.02 ENST00000333274.6
ephrin-A5
chr14_+_67826709 0.02 ENST00000256383.4
eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
chr15_+_45422131 0.02 ENST00000321429.4
dual oxidase 1
chr9_+_125026882 0.02 ENST00000297908.3
ENST00000373730.3
ENST00000546115.1
ENST00000344641.3
mitochondrial ribosome recycling factor
chr2_+_28974668 0.02 ENST00000296122.6
ENST00000395366.2
protein phosphatase 1, catalytic subunit, beta isozyme
chr6_-_99963252 0.02 ENST00000392738.2
ENST00000327681.6
ENST00000472914.2
ubiquitin specific peptidase 45
chr22_-_22221900 0.02 ENST00000215832.6
ENST00000398822.3
mitogen-activated protein kinase 1
chr9_-_86153218 0.02 ENST00000304195.3
ENST00000376438.1
FERM domain containing 3
chr12_+_862089 0.02 ENST00000315939.6
ENST00000537687.1
ENST00000447667.2
WNK lysine deficient protein kinase 1
chr10_-_70287231 0.02 ENST00000609923.1
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
chr1_-_35658736 0.01 ENST00000357214.5
splicing factor proline/glutamine-rich
chr3_-_14166316 0.01 ENST00000396914.3
ENST00000295767.5
coiled-coil-helix-coiled-coil-helix domain containing 4
chr5_+_63802109 0.01 ENST00000334025.2
regulator of G-protein signaling 7 binding protein
chr8_+_120079478 0.01 ENST00000332843.2
collectin sub-family member 10 (C-type lectin)
chr3_+_183873098 0.01 ENST00000313143.3
dishevelled segment polarity protein 3
chr14_-_76127519 0.01 ENST00000256319.6
chromosome 14 open reading frame 1
chr2_+_64681219 0.01 ENST00000238875.5
lectin, galactoside-binding-like
chr10_-_102279586 0.01 ENST00000370345.3
ENST00000451524.1
ENST00000370329.5
SEC31 homolog B (S. cerevisiae)
chr2_-_85788605 0.01 ENST00000233838.4
gamma-glutamyl carboxylase
chr3_+_29322803 0.01 ENST00000396583.3
ENST00000383767.2
RNA binding motif, single stranded interacting protein 3
chr7_+_74072011 0.01 ENST00000324896.4
ENST00000353920.4
ENST00000346152.4
ENST00000416070.1
general transcription factor IIi
chr10_+_105726862 0.01 ENST00000335753.4
ENST00000369755.3
STE20-like kinase
chr8_+_6565854 0.01 ENST00000285518.6
1-acylglycerol-3-phosphate O-acyltransferase 5
chr7_-_26240357 0.00 ENST00000354667.4
ENST00000356674.7
heterogeneous nuclear ribonucleoprotein A2/B1
chr4_-_55991752 0.00 ENST00000263923.4
kinase insert domain receptor (a type III receptor tyrosine kinase)
chr12_+_69864129 0.00 ENST00000547219.1
ENST00000299293.2
ENST00000549921.1
ENST00000550316.1
ENST00000548154.1
ENST00000547414.1
ENST00000550389.1
ENST00000550937.1
ENST00000549092.1
ENST00000550169.1
fibroblast growth factor receptor substrate 2
chrX_-_119445263 0.00 ENST00000309720.5
transmembrane protein 255A
chr3_-_114790179 0.00 ENST00000462705.1
zinc finger and BTB domain containing 20

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0061034 olfactory bulb mitral cell layer development(GO:0061034)
0.1 0.5 GO:0090258 negative regulation of mitochondrial fission(GO:0090258)
0.1 0.2 GO:0043449 cellular alkene metabolic process(GO:0043449)
0.0 0.4 GO:0042670 retinal cone cell differentiation(GO:0042670) retinal cone cell development(GO:0046549)
0.0 0.1 GO:0043553 vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324) negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.0 0.3 GO:0016560 protein import into peroxisome matrix, docking(GO:0016560)
0.0 0.2 GO:0051138 positive regulation of NK T cell differentiation(GO:0051138)
0.0 0.1 GO:1905051 regulation of base-excision repair(GO:1905051) positive regulation of base-excision repair(GO:1905053)
0.0 0.3 GO:0021999 neural plate anterior/posterior regionalization(GO:0021999)
0.0 0.1 GO:1900365 positive regulation of mRNA polyadenylation(GO:1900365)
0.0 0.1 GO:0006740 NADPH regeneration(GO:0006740)
0.0 0.2 GO:0060029 convergent extension involved in organogenesis(GO:0060029)
0.0 0.1 GO:0048294 negative regulation of isotype switching to IgE isotypes(GO:0048294)
0.0 0.3 GO:0043101 purine-containing compound salvage(GO:0043101)
0.0 0.2 GO:0046085 purine nucleoside monophosphate catabolic process(GO:0009128) adenosine metabolic process(GO:0046085)
0.0 0.1 GO:0006729 tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146)
0.0 0.3 GO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan(GO:0019800)
0.0 0.1 GO:0044805 late nucleophagy(GO:0044805)
0.0 0.0 GO:1903517 regulation of telomere maintenance via recombination(GO:0032207) negative regulation of telomere maintenance via recombination(GO:0032208) negative regulation of single strand break repair(GO:1903517) negative regulation of beta-galactosidase activity(GO:1903770) telomere single strand break repair(GO:1903823) negative regulation of telomere single strand break repair(GO:1903824)
0.0 0.1 GO:2000639 regulation of SREBP signaling pathway(GO:2000638) negative regulation of SREBP signaling pathway(GO:2000639)
0.0 0.3 GO:0015937 coenzyme A biosynthetic process(GO:0015937)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0098855 HCN channel complex(GO:0098855)
0.1 0.5 GO:0045298 tubulin complex(GO:0045298)
0.0 0.1 GO:1990032 parallel fiber(GO:1990032)
0.0 0.3 GO:1902560 GMP reductase complex(GO:1902560)
0.0 0.5 GO:0010369 chromocenter(GO:0010369)
0.0 0.1 GO:0070033 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex(GO:0070033) synaptobrevin 2-SNAP-25-syntaxin-3-complexin complex(GO:0070554)
0.0 0.2 GO:0098839 postsynaptic density membrane(GO:0098839)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0099609 microtubule lateral binding(GO:0099609)
0.1 0.4 GO:0005222 intracellular cAMP activated cation channel activity(GO:0005222)
0.0 0.1 GO:0008746 NAD(P)+ transhydrogenase activity(GO:0008746) oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor(GO:0016652)
0.0 0.1 GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity(GO:0008124)
0.0 0.3 GO:0016657 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.3 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.3 GO:0005052 peroxisome matrix targeting signal-1 binding(GO:0005052)
0.0 0.5 GO:0004865 protein serine/threonine phosphatase inhibitor activity(GO:0004865)
0.0 0.1 GO:0035662 Toll-like receptor 4 binding(GO:0035662)
0.0 0.2 GO:0070097 delta-catenin binding(GO:0070097)
0.0 0.2 GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential(GO:0099529) transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1904315)
0.0 0.3 GO:0004062 aryl sulfotransferase activity(GO:0004062)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 PID P38 GAMMA DELTA PATHWAY Signaling mediated by p38-gamma and p38-delta

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME VITAMIN B5 PANTOTHENATE METABOLISM Genes involved in Vitamin B5 (pantothenate) metabolism
0.0 0.2 REACTOME PYRIMIDINE CATABOLISM Genes involved in Pyrimidine catabolism
0.0 0.5 REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS Genes involved in Caspase-mediated cleavage of cytoskeletal proteins
0.0 0.3 REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES Genes involved in Cytosolic sulfonation of small molecules
0.0 0.3 REACTOME PURINE SALVAGE Genes involved in Purine salvage