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Illumina Body Map 2: averaged replicates

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Results for GGAGUGU

Z-value: 0.35

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miRNA associated with seed GGAGUGU

NamemiRBASE accession
hsa-miR-122-5p
MIMAT0000421

Activity profile of GGAGUGU motif

Sorted Z-values of GGAGUGU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr7_-_95225768 0.48 ENST00000005178.5
PDK4
pyruvate dehydrogenase kinase, isozyme 4
chr10_-_74856608 0.31 ENST00000307116.2
ENST00000373008.2
ENST00000412021.2
ENST00000394890.2
ENST00000263556.3
ENST00000440381.1
P4HA1
prolyl 4-hydroxylase, alpha polypeptide I
chr8_+_102504651 0.29 ENST00000251808.3
ENST00000521085.1
GRHL2
grainyhead-like 2 (Drosophila)
chr6_-_35464727 0.23 ENST00000402886.3
TEAD3
TEA domain family member 3
chr14_+_37667118 0.21 ENST00000556615.1
ENST00000327441.7
ENST00000536774.1
MIPOL1
mirror-image polydactyly 1
chr17_+_45608430 0.21 ENST00000322157.4
NPEPPS
aminopeptidase puromycin sensitive
chr16_+_30077055 0.20 ENST00000564595.2
ENST00000569798.1
ALDOA
aldolase A, fructose-bisphosphate
chr6_-_45983581 0.18 ENST00000339561.6
CLIC5
chloride intracellular channel 5
chr8_-_29208183 0.16 ENST00000240100.2
DUSP4
dual specificity phosphatase 4
chr5_+_162864575 0.15 ENST00000512163.1
ENST00000393929.1
ENST00000340828.2
ENST00000511683.2
ENST00000510097.1
ENST00000511490.2
ENST00000510664.1
CCNG1
cyclin G1
chr8_+_145159376 0.13 ENST00000322428.5
MAF1
MAF1 homolog (S. cerevisiae)
chr19_+_46800289 0.11 ENST00000377670.4
HIF3A
hypoxia inducible factor 3, alpha subunit
chr1_-_72748417 0.09 ENST00000357731.5
NEGR1
neuronal growth regulator 1
chr1_-_208417620 0.09 ENST00000367033.3
PLXNA2
plexin A2
chr1_-_149982624 0.09 ENST00000417191.1
ENST00000369135.4
OTUD7B
OTU domain containing 7B
chrX_-_135056216 0.09 ENST00000305963.2
MMGT1
membrane magnesium transporter 1
chr19_-_8373173 0.09 ENST00000537716.2
ENST00000301458.5
CD320
CD320 molecule
chr1_+_25071848 0.08 ENST00000374379.4
CLIC4
chloride intracellular channel 4
chr1_+_16062820 0.08 ENST00000294454.5
SLC25A34
solute carrier family 25, member 34
chr2_-_86948245 0.08 ENST00000439940.2
ENST00000604011.1
CHMP3
RNF103-CHMP3
charged multivesicular body protein 3
RNF103-CHMP3 readthrough
chr12_-_56694142 0.08 ENST00000550655.1
ENST00000548567.1
ENST00000551430.2
ENST00000351328.3
CS
citrate synthase
chr19_-_2456922 0.07 ENST00000582871.1
ENST00000325327.3
LMNB2
lamin B2
chr6_+_72596604 0.07 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
RIMS1
regulating synaptic membrane exocytosis 1
chr10_-_32345305 0.07 ENST00000302418.4
KIF5B
kinesin family member 5B
chr2_-_86790593 0.06 ENST00000263856.4
ENST00000409225.2
CHMP3
charged multivesicular body protein 3
chr2_-_219925189 0.06 ENST00000295731.6
IHH
indian hedgehog
chr7_+_114055052 0.05 ENST00000462331.1
ENST00000408937.3
ENST00000403559.4
ENST00000350908.4
ENST00000393498.2
ENST00000393495.3
ENST00000378237.3
ENST00000393489.3
FOXP2
forkhead box P2
chr1_-_205782304 0.05 ENST00000367137.3
SLC41A1
solute carrier family 41 (magnesium transporter), member 1
chr1_-_245027833 0.05 ENST00000444376.2
HNRNPU
heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
chr19_+_41816053 0.05 ENST00000269967.3
CCDC97
coiled-coil domain containing 97
chr6_+_108881012 0.05 ENST00000343882.6
FOXO3
forkhead box O3
chr2_+_14772810 0.04 ENST00000295092.2
ENST00000331243.4
FAM84A
family with sequence similarity 84, member A
chr4_-_146859623 0.04 ENST00000379448.4
ENST00000513320.1
ZNF827
zinc finger protein 827
chrX_+_154254960 0.04 ENST00000369498.3
FUNDC2
FUN14 domain containing 2
chr8_-_68255912 0.04 ENST00000262215.3
ENST00000519436.1
ARFGEF1
ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
chr19_-_49314269 0.04 ENST00000545387.2
ENST00000316273.6
ENST00000402551.1
ENST00000598162.1
ENST00000599246.1
BCAT2
branched chain amino-acid transaminase 2, mitochondrial
chr7_+_94285637 0.04 ENST00000482108.1
ENST00000488574.1
PEG10
paternally expressed 10
chr5_-_141392538 0.04 ENST00000503794.1
ENST00000510194.1
ENST00000504424.1
ENST00000513454.1
ENST00000458112.2
ENST00000542860.1
ENST00000503229.1
ENST00000500692.2
ENST00000311337.6
ENST00000504139.1
ENST00000505689.1
GNPDA1
glucosamine-6-phosphate deaminase 1
chr15_-_83316254 0.03 ENST00000567678.1
ENST00000450751.2
CPEB1
cytoplasmic polyadenylation element binding protein 1
chr19_-_47291843 0.03 ENST00000542575.2
SLC1A5
solute carrier family 1 (neutral amino acid transporter), member 5
chr14_-_77787198 0.03 ENST00000261534.4
POMT2
protein-O-mannosyltransferase 2
chr7_-_33102338 0.03 ENST00000610140.1
NT5C3A
5'-nucleotidase, cytosolic IIIA
chr17_-_4269768 0.03 ENST00000396981.2
UBE2G1
ubiquitin-conjugating enzyme E2G 1
chr20_+_32581452 0.03 ENST00000375114.3
ENST00000448364.1
RALY
RALY heterogeneous nuclear ribonucleoprotein
chr21_-_40685477 0.03 ENST00000342449.3
BRWD1
bromodomain and WD repeat domain containing 1
chr16_-_30381580 0.02 ENST00000409939.3
TBC1D10B
TBC1 domain family, member 10B
chr3_+_9773409 0.02 ENST00000433861.2
ENST00000424362.1
ENST00000383829.2
ENST00000302054.3
ENST00000420291.1
BRPF1
bromodomain and PHD finger containing, 1
chr19_-_6279932 0.02 ENST00000252674.7
MLLT1
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
chrX_+_71130938 0.02 ENST00000540800.1
NHSL2
NHS-like 2
chr1_+_161087873 0.02 ENST00000368009.2
ENST00000368007.4
ENST00000368008.1
ENST00000392190.5
NIT1
nitrilase 1
chr14_+_33408449 0.02 ENST00000346562.2
ENST00000341321.4
ENST00000548645.1
ENST00000356141.4
ENST00000357798.5
NPAS3
neuronal PAS domain protein 3
chr15_-_72523454 0.02 ENST00000565154.1
ENST00000565184.1
ENST00000389093.3
ENST00000449901.2
ENST00000335181.5
ENST00000319622.6
PKM
pyruvate kinase, muscle
chr3_-_187009646 0.01 ENST00000296280.6
ENST00000392470.2
ENST00000169293.6
ENST00000439271.1
ENST00000392472.2
ENST00000392475.2
MASP1
mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
chr11_-_108369101 0.01 ENST00000323468.5
KDELC2
KDEL (Lys-Asp-Glu-Leu) containing 2
chr14_+_23340822 0.01 ENST00000359591.4
LRP10
low density lipoprotein receptor-related protein 10
chr1_-_161102421 0.01 ENST00000490843.2
ENST00000368006.3
ENST00000392188.1
ENST00000545495.1
DEDD
death effector domain containing
chr5_-_11904152 0.01 ENST00000304623.8
ENST00000458100.2
CTNND2
catenin (cadherin-associated protein), delta 2
chr3_+_47324424 0.01 ENST00000437353.1
ENST00000232766.5
ENST00000455924.2
KLHL18
kelch-like family member 18
chr5_+_96271141 0.01 ENST00000231368.5
LNPEP
leucyl/cystinyl aminopeptidase
chr2_-_96811170 0.01 ENST00000288943.4
DUSP2
dual specificity phosphatase 2
chr1_-_153895377 0.01 ENST00000368655.4
GATAD2B
GATA zinc finger domain containing 2B
chrX_-_48901012 0.01 ENST00000315869.7
TFE3
transcription factor binding to IGHM enhancer 3
chr19_+_47104493 0.01 ENST00000291295.9
ENST00000597743.1
CALM3
calmodulin 3 (phosphorylase kinase, delta)
chr1_-_109940550 0.00 ENST00000256637.6
SORT1
sortilin 1
chr17_-_27916621 0.00 ENST00000225394.3
GIT1
G protein-coupled receptor kinase interacting ArfGAP 1
chr4_-_76598296 0.00 ENST00000395719.3
G3BP2
GTPase activating protein (SH3 domain) binding protein 2
chr10_-_61666267 0.00 ENST00000263102.6
CCDC6
coiled-coil domain containing 6
chr8_-_117886955 0.00 ENST00000297338.2
RAD21
RAD21 homolog (S. pombe)

Network of associatons between targets according to the STRING database.

First level regulatory network of GGAGUGU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0060671 epithelial cell differentiation involved in embryonic placenta development(GO:0060671) epithelial cell morphogenesis involved in placental branching(GO:0060672)
0.0 0.1 GO:0061763 multivesicular body-lysosome fusion(GO:0061763)
0.0 0.1 GO:0021934 hindbrain tangential cell migration(GO:0021934)
0.0 0.5 GO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate(GO:0010510)
0.0 0.3 GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401)
0.0 0.1 GO:0016480 negative regulation of transcription from RNA polymerase III promoter(GO:0016480)
0.0 0.1 GO:0030908 intein-mediated protein splicing(GO:0016539) protein splicing(GO:0030908)
0.0 0.2 GO:0055059 asymmetric neuroblast division(GO:0055059)
0.0 0.1 GO:0031296 B cell costimulation(GO:0031296)
0.0 0.1 GO:0001544 initiation of primordial ovarian follicle growth(GO:0001544)
0.0 0.1 GO:0098582 innate vocalization behavior(GO:0098582)
0.0 0.1 GO:0035617 stress granule disassembly(GO:0035617)
0.0 0.1 GO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0071947)
0.0 0.0 GO:0006043 glucosamine catabolic process(GO:0006043)
0.0 0.2 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.2 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0016222 procollagen-proline 4-dioxygenase complex(GO:0016222)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)
0.1 0.2 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0 0.1 GO:0000994 RNA polymerase III core binding(GO:0000994)
0.0 0.3 GO:0019798 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798)
0.0 0.1 GO:0015235 cobalamin transporter activity(GO:0015235)
0.0 0.1 GO:0036440 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.2 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.1 GO:0099609 microtubule lateral binding(GO:0099609)
0.0 0.3 GO:0044213 intronic transcription regulatory region sequence-specific DNA binding(GO:0001161) intronic transcription regulatory region DNA binding(GO:0044213)
0.0 0.0 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex