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Illumina Body Map 2: averaged replicates

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Results for UAAGACG

Z-value: 0.44

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miRNA associated with seed UAAGACG

NamemiRBASE accession
hsa-miR-208a-3p
MIMAT0000241
hsa-miR-208b-3p
MIMAT0004960

Activity profile of UAAGACG motif

Sorted Z-values of UAAGACG motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_-_62050278 1.29 ENST00000578147.1
ENST00000435607.1
SCN4A
sodium channel, voltage-gated, type IV, alpha subunit
chr8_-_23712312 1.09 ENST00000290271.2
STC1
stanniocalcin 1
chr14_-_61116168 1.02 ENST00000247182.6
SIX1
SIX homeobox 1
chr5_-_158526756 0.78 ENST00000313708.6
ENST00000517373.1
EBF1
early B-cell factor 1
chr6_+_72596604 0.55 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
RIMS1
regulating synaptic membrane exocytosis 1
chr10_+_63661053 0.43 ENST00000279873.7
ARID5B
AT rich interactive domain 5B (MRF1-like)
chr12_-_26278030 0.42 ENST00000242728.4
BHLHE41
basic helix-loop-helix family, member e41
chr16_+_54964740 0.42 ENST00000394636.4
IRX5
iroquois homeobox 5
chrX_-_114468605 0.40 ENST00000538422.1
ENST00000317135.8
LRCH2
leucine-rich repeats and calponin homology (CH) domain containing 2
chr2_+_176987088 0.39 ENST00000249499.6
HOXD9
homeobox D9
chr3_+_29322803 0.38 ENST00000396583.3
ENST00000383767.2
RBMS3
RNA binding motif, single stranded interacting protein 3
chr3_+_89156674 0.33 ENST00000336596.2
EPHA3
EPH receptor A3
chr9_-_140196703 0.31 ENST00000356628.2
NRARP
NOTCH-regulated ankyrin repeat protein
chr1_-_225840747 0.29 ENST00000366843.2
ENST00000366844.3
ENAH
enabled homolog (Drosophila)
chr3_+_61547585 0.26 ENST00000295874.10
ENST00000474889.1
PTPRG
protein tyrosine phosphatase, receptor type, G
chr8_-_141645645 0.25 ENST00000519980.1
ENST00000220592.5
AGO2
argonaute RISC catalytic component 2
chr7_-_139876812 0.25 ENST00000397560.2
JHDM1D
lysine (K)-specific demethylase 7A
chr9_-_16870704 0.25 ENST00000380672.4
ENST00000380667.2
ENST00000380666.2
ENST00000486514.1
BNC2
basonuclin 2
chr1_+_145611010 0.24 ENST00000369291.5
RNF115
ring finger protein 115
chr6_+_36646435 0.23 ENST00000244741.5
ENST00000405375.1
ENST00000373711.2
CDKN1A
cyclin-dependent kinase inhibitor 1A (p21, Cip1)
chr6_+_133562472 0.21 ENST00000430974.2
ENST00000367895.5
ENST00000355167.3
ENST00000355286.6
EYA4
eyes absent homolog 4 (Drosophila)
chr11_-_86666427 0.20 ENST00000531380.1
FZD4
frizzled family receptor 4
chr14_+_105781048 0.19 ENST00000458164.2
ENST00000447393.1
PACS2
phosphofurin acidic cluster sorting protein 2
chr10_+_11206925 0.19 ENST00000354440.2
ENST00000315874.4
ENST00000427450.1
CELF2
CUGBP, Elav-like family member 2
chr2_-_86564776 0.18 ENST00000165698.5
ENST00000541910.1
ENST00000535845.1
REEP1
receptor accessory protein 1
chr11_-_118047376 0.17 ENST00000278947.5
SCN2B
sodium channel, voltage-gated, type II, beta subunit
chr1_-_154842741 0.17 ENST00000271915.4
KCNN3
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
chr1_-_16678914 0.16 ENST00000375592.3
FBXO42
F-box protein 42
chr8_+_58907104 0.16 ENST00000361488.3
FAM110B
family with sequence similarity 110, member B
chr9_-_127952032 0.16 ENST00000456642.1
ENST00000373546.3
ENST00000373547.4
PPP6C
protein phosphatase 6, catalytic subunit
chr17_+_11144580 0.16 ENST00000441885.3
ENST00000432116.3
ENST00000409168.3
SHISA6
shisa family member 6
chr9_+_96793076 0.16 ENST00000375360.3
PTPDC1
protein tyrosine phosphatase domain containing 1
chr1_+_43148059 0.15 ENST00000321358.7
ENST00000332220.6
YBX1
Y box binding protein 1
chr2_+_176981307 0.15 ENST00000249501.4
HOXD10
homeobox D10
chr17_+_66508537 0.14 ENST00000392711.1
ENST00000585427.1
ENST00000589228.1
ENST00000536854.2
ENST00000588702.1
ENST00000589309.1
PRKAR1A
protein kinase, cAMP-dependent, regulatory, type I, alpha
chr1_+_97187318 0.14 ENST00000609116.1
ENST00000370198.1
ENST00000370197.1
ENST00000426398.2
ENST00000394184.3
PTBP2
polypyrimidine tract binding protein 2
chr8_-_89339705 0.14 ENST00000286614.6
MMP16
matrix metallopeptidase 16 (membrane-inserted)
chr9_+_82186872 0.14 ENST00000376544.3
ENST00000376520.4
TLE4
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr13_-_50367057 0.14 ENST00000261667.3
KPNA3
karyopherin alpha 3 (importin alpha 4)
chr7_-_44924939 0.13 ENST00000395699.2
PURB
purine-rich element binding protein B
chr10_-_35930219 0.13 ENST00000374694.1
FZD8
frizzled family receptor 8
chr6_+_21593972 0.13 ENST00000244745.1
ENST00000543472.1
SOX4
SRY (sex determining region Y)-box 4
chr10_-_32345305 0.13 ENST00000302418.4
KIF5B
kinesin family member 5B
chr14_-_35182994 0.13 ENST00000341223.3
CFL2
cofilin 2 (muscle)
chr19_-_7293942 0.12 ENST00000341500.5
ENST00000302850.5
INSR
insulin receptor
chr1_-_205782304 0.11 ENST00000367137.3
SLC41A1
solute carrier family 41 (magnesium transporter), member 1
chr18_-_21977748 0.11 ENST00000399441.4
ENST00000319481.3
OSBPL1A
oxysterol binding protein-like 1A
chr14_-_27066636 0.11 ENST00000267422.7
ENST00000344429.5
ENST00000574031.1
ENST00000465357.2
ENST00000547619.1
NOVA1
neuro-oncological ventral antigen 1
chr3_+_186501336 0.10 ENST00000323963.5
ENST00000440191.2
ENST00000356531.5
EIF4A2
eukaryotic translation initiation factor 4A2
chr6_+_37225540 0.10 ENST00000373491.3
TBC1D22B
TBC1 domain family, member 22B
chr11_-_2950642 0.10 ENST00000314222.4
PHLDA2
pleckstrin homology-like domain, family A, member 2
chr3_-_15374033 0.09 ENST00000253688.5
ENST00000383791.3
SH3BP5
SH3-domain binding protein 5 (BTK-associated)
chr17_+_38219063 0.08 ENST00000584985.1
ENST00000264637.4
ENST00000450525.2
THRA
thyroid hormone receptor, alpha
chr6_-_13711773 0.08 ENST00000011619.3
RANBP9
RAN binding protein 9
chr7_+_138916231 0.07 ENST00000473989.3
ENST00000288561.8
UBN2
ubinuclein 2
chr8_+_42752053 0.07 ENST00000307602.4
HOOK3
hook microtubule-tethering protein 3
chrY_+_15016725 0.07 ENST00000336079.3
DDX3Y
DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
chr3_-_71774516 0.07 ENST00000425534.3
EIF4E3
eukaryotic translation initiation factor 4E family member 3
chr7_+_114055052 0.07 ENST00000462331.1
ENST00000408937.3
ENST00000403559.4
ENST00000350908.4
ENST00000393498.2
ENST00000393495.3
ENST00000378237.3
ENST00000393489.3
FOXP2
forkhead box P2
chr2_+_228029281 0.07 ENST00000396578.3
COL4A3
collagen, type IV, alpha 3 (Goodpasture antigen)
chr1_-_55680762 0.07 ENST00000407756.1
ENST00000294383.6
USP24
ubiquitin specific peptidase 24
chr4_+_139936905 0.07 ENST00000280614.2
CCRN4L
CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr5_+_57878859 0.07 ENST00000282878.4
RAB3C
RAB3C, member RAS oncogene family
chr1_+_231297798 0.07 ENST00000444294.3
TRIM67
tripartite motif containing 67
chr2_-_240322643 0.07 ENST00000345617.3
HDAC4
histone deacetylase 4
chr5_-_131132614 0.07 ENST00000307968.7
ENST00000307954.8
FNIP1
folliculin interacting protein 1
chr10_-_75255724 0.06 ENST00000342558.3
ENST00000360663.5
ENST00000394829.2
ENST00000394828.2
ENST00000394822.2
PPP3CB
protein phosphatase 3, catalytic subunit, beta isozyme
chr3_+_43328004 0.06 ENST00000454177.1
ENST00000429705.2
ENST00000296088.7
ENST00000437827.1
SNRK
SNF related kinase
chr6_-_166075557 0.06 ENST00000539869.2
ENST00000366882.1
PDE10A
phosphodiesterase 10A
chr12_+_68042495 0.06 ENST00000344096.3
DYRK2
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
chr12_-_93323013 0.06 ENST00000322349.8
EEA1
early endosome antigen 1
chr14_+_29234870 0.05 ENST00000382535.3
FOXG1
forkhead box G1
chr12_+_72148614 0.05 ENST00000261263.3
RAB21
RAB21, member RAS oncogene family
chr9_-_34126730 0.05 ENST00000361264.4
DCAF12
DDB1 and CUL4 associated factor 12
chr9_-_23821273 0.05 ENST00000380110.4
ELAVL2
ELAV like neuron-specific RNA binding protein 2
chr3_-_18466787 0.05 ENST00000338745.6
ENST00000450898.1
SATB1
SATB homeobox 1
chr7_-_120498357 0.05 ENST00000415871.1
ENST00000222747.3
ENST00000430985.1
TSPAN12
tetraspanin 12
chr20_+_51588873 0.05 ENST00000371497.5
TSHZ2
teashirt zinc finger homeobox 2
chr2_+_175199674 0.04 ENST00000394967.2
SP9
Sp9 transcription factor
chr22_+_21771656 0.04 ENST00000407464.2
HIC2
hypermethylated in cancer 2
chrX_+_136648297 0.04 ENST00000287538.5
ZIC3
Zic family member 3
chr21_-_16437255 0.03 ENST00000400199.1
ENST00000400202.1
NRIP1
nuclear receptor interacting protein 1
chr1_+_19923454 0.03 ENST00000602662.1
ENST00000602293.1
ENST00000322753.6
MINOS1-NBL1
MINOS1
MINOS1-NBL1 readthrough
mitochondrial inner membrane organizing system 1
chr19_-_3700388 0.03 ENST00000589578.1
ENST00000537021.1
ENST00000539785.1
ENST00000335312.3
PIP5K1C
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
chr2_-_174830430 0.03 ENST00000310015.6
ENST00000455789.2
SP3
Sp3 transcription factor
chr17_-_8534067 0.02 ENST00000360416.3
ENST00000269243.4
MYH10
myosin, heavy chain 10, non-muscle
chr6_+_163835669 0.02 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
QKI
QKI, KH domain containing, RNA binding
chr3_-_15563229 0.02 ENST00000383786.5
ENST00000383787.2
ENST00000383785.2
ENST00000383788.5
ENST00000603808.1
COLQ
collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
chr1_+_36396677 0.02 ENST00000373191.4
ENST00000397828.2
AGO3
argonaute RISC catalytic component 3
chr15_+_57210818 0.02 ENST00000438423.2
ENST00000267811.5
ENST00000452095.2
ENST00000559609.1
ENST00000333725.5
TCF12
transcription factor 12
chr22_+_30279144 0.02 ENST00000401950.2
ENST00000333027.3
ENST00000445401.1
ENST00000323630.5
ENST00000351488.3
MTMR3
myotubularin related protein 3
chr5_+_112043186 0.01 ENST00000509732.1
ENST00000457016.1
ENST00000507379.1
APC
adenomatous polyposis coli
chrX_+_41192595 0.01 ENST00000399959.2
DDX3X
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr4_-_100871506 0.01 ENST00000296417.5
H2AFZ
H2A histone family, member Z
chr15_-_56535464 0.01 ENST00000559447.2
ENST00000422057.1
ENST00000317318.6
ENST00000423270.1
RFX7
regulatory factor X, 7
chrX_+_68048803 0.00 ENST00000204961.4
EFNB1
ephrin-B1
chr20_+_48552908 0.00 ENST00000244061.2
RNF114
ring finger protein 114
chr14_-_50698276 0.00 ENST00000216373.5
SOS2
son of sevenless homolog 2 (Drosophila)

Network of associatons between targets according to the STRING database.

First level regulatory network of UAAGACG

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development(GO:2000729)
0.1 1.1 GO:0001886 endothelial cell morphogenesis(GO:0001886)
0.1 0.3 GO:0097156 fasciculation of motor neuron axon(GO:0097156)
0.1 0.4 GO:0060040 retinal bipolar neuron differentiation(GO:0060040)
0.1 0.2 GO:0061300 cerebellum vasculature development(GO:0061300)
0.0 0.3 GO:0090625 mRNA cleavage involved in gene silencing by siRNA(GO:0090625)
0.0 0.2 GO:0060574 intestinal epithelial cell maturation(GO:0060574)
0.0 0.3 GO:1903385 regulation of homophilic cell adhesion(GO:1903385)
0.0 0.1 GO:0035910 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.3 GO:0014807 regulation of somitogenesis(GO:0014807)
0.0 0.1 GO:0019087 transformation of host cell by virus(GO:0019087)
0.0 0.1 GO:0045925 positive regulation of female receptivity(GO:0045925)
0.0 0.1 GO:0035617 stress granule disassembly(GO:0035617)
0.0 0.2 GO:0046684 response to pyrethroid(GO:0046684)
0.0 0.1 GO:0060720 spongiotrophoblast cell proliferation(GO:0060720) regulation of spongiotrophoblast cell proliferation(GO:0060721) cell proliferation involved in embryonic placenta development(GO:0060722) regulation of cell proliferation involved in embryonic placenta development(GO:0060723)
0.0 0.5 GO:0098828 positive regulation of inhibitory postsynaptic potential(GO:0097151) modulation of inhibitory postsynaptic potential(GO:0098828)
0.0 1.3 GO:0019228 neuronal action potential(GO:0019228)
0.0 0.4 GO:0010944 negative regulation of transcription by competitive promoter binding(GO:0010944)
0.0 0.1 GO:0071286 cellular response to magnesium ion(GO:0071286)
0.0 0.5 GO:0048934 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.0 0.1 GO:0098582 innate vocalization behavior(GO:0098582)
0.0 0.1 GO:0002904 positive regulation of B cell apoptotic process(GO:0002904)
0.0 0.2 GO:0070934 CRD-mediated mRNA stabilization(GO:0070934)
0.0 0.0 GO:0021592 fourth ventricle development(GO:0021592)
0.0 0.2 GO:0016576 histone dephosphorylation(GO:0016576)
0.0 0.1 GO:0022027 interkinetic nuclear migration(GO:0022027)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0070557 PCNA-p21 complex(GO:0070557)
0.1 1.5 GO:0001518 voltage-gated sodium channel complex(GO:0001518)
0.0 0.3 GO:0035068 micro-ribonucleoprotein complex(GO:0035068)
0.0 0.1 GO:0005899 insulin receptor complex(GO:0005899)
0.0 0.2 GO:0071204 histone pre-mRNA 3'end processing complex(GO:0071204)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0019912 cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.1 0.3 GO:0098808 mRNA cap binding(GO:0098808)
0.1 0.4 GO:0005499 vitamin D binding(GO:0005499)
0.0 0.4 GO:0043426 MRF binding(GO:0043426)
0.0 1.5 GO:1905030 voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030)
0.0 0.1 GO:0099609 microtubule lateral binding(GO:0099609)
0.0 0.2 GO:0016286 small conductance calcium-activated potassium channel activity(GO:0016286)
0.0 1.0 GO:0001223 transcription coactivator binding(GO:0001223)
0.0 0.2 GO:0031849 olfactory receptor binding(GO:0031849)
0.0 0.8 GO:0070742 C2H2 zinc finger domain binding(GO:0070742)
0.0 0.3 GO:0005004 GPI-linked ephrin receptor activity(GO:0005004)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0 0.3 PID EPHA FWDPATHWAY EPHA forward signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.5 REACTOME INTERACTION BETWEEN L1 AND ANKYRINS Genes involved in Interaction between L1 and Ankyrins
0.0 0.5 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle