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Illumina Body Map 2: averaged replicates

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Results for UAAGACU

Z-value: 0.39

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miRNA associated with seed UAAGACU

NamemiRBASE accession
hsa-miR-499a-5p
MIMAT0002870

Activity profile of UAAGACU motif

Sorted Z-values of UAAGACU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_-_23712312 0.85 ENST00000290271.2
STC1
stanniocalcin 1
chr14_-_61116168 0.82 ENST00000247182.6
SIX1
SIX homeobox 1
chr5_-_158526756 0.63 ENST00000313708.6
ENST00000517373.1
EBF1
early B-cell factor 1
chr17_-_62050278 0.62 ENST00000578147.1
ENST00000435607.1
SCN4A
sodium channel, voltage-gated, type IV, alpha subunit
chr16_+_54964740 0.50 ENST00000394636.4
IRX5
iroquois homeobox 5
chr6_+_72596604 0.48 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
RIMS1
regulating synaptic membrane exocytosis 1
chr3_+_61547585 0.37 ENST00000295874.10
ENST00000474889.1
PTPRG
protein tyrosine phosphatase, receptor type, G
chr5_+_55033845 0.35 ENST00000353507.5
ENST00000514278.2
ENST00000505374.1
ENST00000506511.1
DDX4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
chr3_+_29322803 0.35 ENST00000396583.3
ENST00000383767.2
RBMS3
RNA binding motif, single stranded interacting protein 3
chr2_+_176987088 0.32 ENST00000249499.6
HOXD9
homeobox D9
chr10_+_63661053 0.30 ENST00000279873.7
ARID5B
AT rich interactive domain 5B (MRF1-like)
chr3_+_89156674 0.30 ENST00000336596.2
EPHA3
EPH receptor A3
chr1_+_66999799 0.29 ENST00000371035.3
ENST00000371036.3
ENST00000371037.4
SGIP1
SH3-domain GRB2-like (endophilin) interacting protein 1
chr12_-_26278030 0.27 ENST00000242728.4
BHLHE41
basic helix-loop-helix family, member e41
chr1_-_225840747 0.25 ENST00000366843.2
ENST00000366844.3
ENAH
enabled homolog (Drosophila)
chr11_-_86666427 0.24 ENST00000531380.1
FZD4
frizzled family receptor 4
chr7_-_120498357 0.22 ENST00000415871.1
ENST00000222747.3
ENST00000430985.1
TSPAN12
tetraspanin 12
chr9_-_127952032 0.20 ENST00000456642.1
ENST00000373546.3
ENST00000373547.4
PPP6C
protein phosphatase 6, catalytic subunit
chr1_+_145611010 0.19 ENST00000369291.5
RNF115
ring finger protein 115
chrY_+_15016725 0.19 ENST00000336079.3
DDX3Y
DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
chr6_+_133562472 0.19 ENST00000430974.2
ENST00000367895.5
ENST00000355167.3
ENST00000355286.6
EYA4
eyes absent homolog 4 (Drosophila)
chr4_+_123747834 0.18 ENST00000264498.3
FGF2
fibroblast growth factor 2 (basic)
chr2_-_86564776 0.17 ENST00000165698.5
ENST00000541910.1
ENST00000535845.1
REEP1
receptor accessory protein 1
chr13_+_102104980 0.17 ENST00000545560.2
ITGBL1
integrin, beta-like 1 (with EGF-like repeat domains)
chr9_+_96793076 0.16 ENST00000375360.3
PTPDC1
protein tyrosine phosphatase domain containing 1
chr2_-_172750733 0.16 ENST00000392592.4
ENST00000422440.2
SLC25A12
solute carrier family 25 (aspartate/glutamate carrier), member 12
chr7_-_139876812 0.16 ENST00000397560.2
JHDM1D
lysine (K)-specific demethylase 7A
chr8_+_58907104 0.14 ENST00000361488.3
FAM110B
family with sequence similarity 110, member B
chr17_+_11144580 0.14 ENST00000441885.3
ENST00000432116.3
ENST00000409168.3
SHISA6
shisa family member 6
chr1_-_205782304 0.14 ENST00000367137.3
SLC41A1
solute carrier family 41 (magnesium transporter), member 1
chr1_+_43148059 0.14 ENST00000321358.7
ENST00000332220.6
YBX1
Y box binding protein 1
chr6_+_36646435 0.14 ENST00000244741.5
ENST00000405375.1
ENST00000373711.2
CDKN1A
cyclin-dependent kinase inhibitor 1A (p21, Cip1)
chr17_-_8534067 0.13 ENST00000360416.3
ENST00000269243.4
MYH10
myosin, heavy chain 10, non-muscle
chr6_-_166075557 0.12 ENST00000539869.2
ENST00000366882.1
PDE10A
phosphodiesterase 10A
chr10_-_35930219 0.12 ENST00000374694.1
FZD8
frizzled family receptor 8
chr14_+_105781048 0.12 ENST00000458164.2
ENST00000447393.1
PACS2
phosphofurin acidic cluster sorting protein 2
chr2_+_176981307 0.11 ENST00000249501.4
HOXD10
homeobox D10
chr11_-_118047376 0.11 ENST00000278947.5
SCN2B
sodium channel, voltage-gated, type II, beta subunit
chr10_-_32345305 0.11 ENST00000302418.4
KIF5B
kinesin family member 5B
chr2_+_228029281 0.11 ENST00000396578.3
COL4A3
collagen, type IV, alpha 3 (Goodpasture antigen)
chr17_+_66508537 0.11 ENST00000392711.1
ENST00000585427.1
ENST00000589228.1
ENST00000536854.2
ENST00000588702.1
ENST00000589309.1
PRKAR1A
protein kinase, cAMP-dependent, regulatory, type I, alpha
chr14_+_29234870 0.10 ENST00000382535.3
FOXG1
forkhead box G1
chr8_-_89339705 0.10 ENST00000286614.6
MMP16
matrix metallopeptidase 16 (membrane-inserted)
chr9_-_23821273 0.10 ENST00000380110.4
ELAVL2
ELAV like neuron-specific RNA binding protein 2
chr1_-_16678914 0.09 ENST00000375592.3
FBXO42
F-box protein 42
chr6_+_21593972 0.08 ENST00000244745.1
ENST00000543472.1
SOX4
SRY (sex determining region Y)-box 4
chr19_-_7293942 0.08 ENST00000341500.5
ENST00000302850.5
INSR
insulin receptor
chr9_+_82186872 0.07 ENST00000376544.3
ENST00000376520.4
TLE4
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr4_+_139936905 0.07 ENST00000280614.2
CCRN4L
CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr5_-_131132614 0.07 ENST00000307968.7
ENST00000307954.8
FNIP1
folliculin interacting protein 1
chr22_+_21771656 0.06 ENST00000407464.2
HIC2
hypermethylated in cancer 2
chr1_+_97187318 0.06 ENST00000609116.1
ENST00000370198.1
ENST00000370197.1
ENST00000426398.2
ENST00000394184.3
PTBP2
polypyrimidine tract binding protein 2
chr18_-_21977748 0.06 ENST00000399441.4
ENST00000319481.3
OSBPL1A
oxysterol binding protein-like 1A
chr6_+_37225540 0.05 ENST00000373491.3
TBC1D22B
TBC1 domain family, member 22B
chr9_-_34126730 0.05 ENST00000361264.4
DCAF12
DDB1 and CUL4 associated factor 12
chr6_-_13711773 0.05 ENST00000011619.3
RANBP9
RAN binding protein 9
chr17_+_38219063 0.05 ENST00000584985.1
ENST00000264637.4
ENST00000450525.2
THRA
thyroid hormone receptor, alpha
chr7_+_138916231 0.05 ENST00000473989.3
ENST00000288561.8
UBN2
ubinuclein 2
chr8_+_42752053 0.05 ENST00000307602.4
HOOK3
hook microtubule-tethering protein 3
chr12_-_93323013 0.05 ENST00000322349.8
EEA1
early endosome antigen 1
chrX_+_68048803 0.04 ENST00000204961.4
EFNB1
ephrin-B1
chr6_+_105404899 0.04 ENST00000345080.4
LIN28B
lin-28 homolog B (C. elegans)
chr7_-_44924939 0.04 ENST00000395699.2
PURB
purine-rich element binding protein B
chr3_-_15374033 0.04 ENST00000253688.5
ENST00000383791.3
SH3BP5
SH3-domain binding protein 5 (BTK-associated)
chr10_-_75255724 0.04 ENST00000342558.3
ENST00000360663.5
ENST00000394829.2
ENST00000394828.2
ENST00000394822.2
PPP3CB
protein phosphatase 3, catalytic subunit, beta isozyme
chr3_+_43328004 0.03 ENST00000454177.1
ENST00000429705.2
ENST00000296088.7
ENST00000437827.1
SNRK
SNF related kinase
chr12_+_72148614 0.03 ENST00000261263.3
RAB21
RAB21, member RAS oncogene family
chr13_-_50367057 0.03 ENST00000261667.3
KPNA3
karyopherin alpha 3 (importin alpha 4)
chr2_-_71454185 0.03 ENST00000244221.8
PAIP2B
poly(A) binding protein interacting protein 2B
chr1_-_154842741 0.03 ENST00000271915.4
KCNN3
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
chrX_+_28605516 0.02 ENST00000378993.1
IL1RAPL1
interleukin 1 receptor accessory protein-like 1
chr6_+_163835669 0.02 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
QKI
QKI, KH domain containing, RNA binding
chr20_+_51588873 0.01 ENST00000371497.5
TSHZ2
teashirt zinc finger homeobox 2
chr1_+_36396677 0.01 ENST00000373191.4
ENST00000397828.2
AGO3
argonaute RISC catalytic component 3
chr7_+_65338230 0.01 ENST00000360768.3
VKORC1L1
vitamin K epoxide reductase complex, subunit 1-like 1
chrX_+_41192595 0.01 ENST00000399959.2
DDX3X
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr1_+_19923454 0.01 ENST00000602662.1
ENST00000602293.1
ENST00000322753.6
MINOS1-NBL1
MINOS1
MINOS1-NBL1 readthrough
mitochondrial inner membrane organizing system 1
chr19_-_3700388 0.01 ENST00000589578.1
ENST00000537021.1
ENST00000539785.1
ENST00000335312.3
PIP5K1C
phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
chr5_-_114880533 0.01 ENST00000274457.3
FEM1C
fem-1 homolog c (C. elegans)
chr22_+_30279144 0.01 ENST00000401950.2
ENST00000333027.3
ENST00000445401.1
ENST00000323630.5
ENST00000351488.3
MTMR3
myotubularin related protein 3
chr12_+_68042495 0.01 ENST00000344096.3
DYRK2
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
chr21_-_16437255 0.00 ENST00000400199.1
ENST00000400202.1
NRIP1
nuclear receptor interacting protein 1
chr7_+_114055052 0.00 ENST00000462331.1
ENST00000408937.3
ENST00000403559.4
ENST00000350908.4
ENST00000393498.2
ENST00000393495.3
ENST00000378237.3
ENST00000393489.3
FOXP2
forkhead box P2
chr16_-_80838195 0.00 ENST00000570137.2
CDYL2
chromodomain protein, Y-like 2
chr17_-_45266542 0.00 ENST00000531206.1
ENST00000527547.1
ENST00000446365.2
ENST00000575483.1
ENST00000066544.3
CDC27
cell division cycle 27
chr5_+_112043186 0.00 ENST00000509732.1
ENST00000457016.1
ENST00000507379.1
APC
adenomatous polyposis coli

Network of associatons between targets according to the STRING database.

First level regulatory network of UAAGACU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development(GO:2000729)
0.1 0.5 GO:0060040 retinal bipolar neuron differentiation(GO:0060040)
0.1 0.2 GO:0061300 cerebellum vasculature development(GO:0061300)
0.1 0.3 GO:0097156 fasciculation of motor neuron axon(GO:0097156)
0.1 0.9 GO:0001886 endothelial cell morphogenesis(GO:0001886)
0.1 0.2 GO:0042660 positive regulation of cell fate specification(GO:0042660)
0.1 0.4 GO:1903385 regulation of homophilic cell adhesion(GO:1903385)
0.0 0.2 GO:0043490 malate-aspartate shuttle(GO:0043490)
0.0 0.3 GO:2000253 positive regulation of feeding behavior(GO:2000253)
0.0 0.1 GO:0060574 intestinal epithelial cell maturation(GO:0060574)
0.0 0.1 GO:0035617 stress granule disassembly(GO:0035617)
0.0 0.1 GO:0035905 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.5 GO:0097151 positive regulation of inhibitory postsynaptic potential(GO:0097151) modulation of inhibitory postsynaptic potential(GO:0098828)
0.0 0.1 GO:0019087 transformation of host cell by virus(GO:0019087)
0.0 0.1 GO:0010961 cellular magnesium ion homeostasis(GO:0010961)
0.0 0.1 GO:0002904 positive regulation of B cell apoptotic process(GO:0002904)
0.0 0.1 GO:0046684 response to pyrethroid(GO:0046684)
0.0 0.1 GO:0021592 fourth ventricle development(GO:0021592)
0.0 0.0 GO:0045925 positive regulation of female receptivity(GO:0045925)
0.0 0.4 GO:0048934 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.0 0.3 GO:0034587 piRNA metabolic process(GO:0034587)
0.0 0.1 GO:0070934 CRD-mediated mRNA stabilization(GO:0070934)
0.0 0.3 GO:0010944 negative regulation of transcription by competitive promoter binding(GO:0010944)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0070557 PCNA-p21 complex(GO:0070557)
0.0 0.3 GO:0071547 piP-body(GO:0071547)
0.0 0.7 GO:0001518 voltage-gated sodium channel complex(GO:0001518)
0.0 0.1 GO:0097513 myosin II filament(GO:0097513)
0.0 0.1 GO:0071204 histone pre-mRNA 3'end processing complex(GO:0071204)
0.0 0.1 GO:0005587 collagen type IV trimer(GO:0005587)
0.0 0.1 GO:0005899 insulin receptor complex(GO:0005899)
0.0 0.1 GO:1990851 Wnt-Frizzled-LRP5/6 complex(GO:1990851)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005499 vitamin D binding(GO:0005499)
0.0 0.1 GO:0019912 cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0 0.3 GO:0043426 MRF binding(GO:0043426)
0.0 0.1 GO:0099609 microtubule lateral binding(GO:0099609)
0.0 0.2 GO:0031849 olfactory receptor binding(GO:0031849)
0.0 0.8 GO:0001223 transcription coactivator binding(GO:0001223)
0.0 0.7 GO:1905030 voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030)
0.0 0.2 GO:0015183 L-aspartate transmembrane transporter activity(GO:0015183)
0.0 0.5 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.3 GO:0005004 GPI-linked ephrin receptor activity(GO:0005004)
0.0 0.6 GO:0070742 C2H2 zinc finger domain binding(GO:0070742)
0.0 0.1 GO:0004118 cGMP-stimulated cyclic-nucleotide phosphodiesterase activity(GO:0004118)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID EPHA FWDPATHWAY EPHA forward signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.7 REACTOME INTERACTION BETWEEN L1 AND ANKYRINS Genes involved in Interaction between L1 and Ankyrins
0.0 0.2 REACTOME SIGNALING BY FGFR3 MUTANTS Genes involved in Signaling by FGFR3 mutants