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Illumina Body Map 2: averaged replicates

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Results for UGACAUC

Z-value: 0.37

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miRNA associated with seed UGACAUC

NamemiRBASE accession
hsa-miR-489-3p
MIMAT0002805

Activity profile of UGACAUC motif

Sorted Z-values of UGACAUC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr7_+_31092076 0.45 ENST00000304166.4
ADCYAP1R1
adenylate cyclase activating polypeptide 1 (pituitary) receptor type I
chr19_-_55954230 0.43 ENST00000376325.4
SHISA7
shisa family member 7
chr2_-_100939195 0.42 ENST00000393437.3
LONRF2
LON peptidase N-terminal domain and ring finger 2
chr1_+_65730385 0.41 ENST00000263441.7
ENST00000395325.3
DNAJC6
DnaJ (Hsp40) homolog, subfamily C, member 6
chr6_+_123317116 0.39 ENST00000275162.5
CLVS2
clavesin 2
chr2_+_166095898 0.34 ENST00000424833.1
ENST00000375437.2
ENST00000357398.3
SCN2A
sodium channel, voltage-gated, type II, alpha subunit
chr9_+_77112244 0.30 ENST00000376896.3
RORB
RAR-related orphan receptor B
chr7_+_107110488 0.30 ENST00000304402.4
GPR22
G protein-coupled receptor 22
chr11_-_132813566 0.29 ENST00000331898.7
OPCML
opioid binding protein/cell adhesion molecule-like
chr7_+_43152191 0.29 ENST00000395891.2
HECW1
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
chr15_+_62853562 0.28 ENST00000561311.1
TLN2
talin 2
chr14_+_79745746 0.28 ENST00000281127.7
NRXN3
neurexin 3
chr20_+_10199468 0.27 ENST00000254976.2
ENST00000304886.2
SNAP25
synaptosomal-associated protein, 25kDa
chr1_-_84464780 0.26 ENST00000260505.8
TTLL7
tubulin tyrosine ligase-like family, member 7
chr15_+_51633826 0.26 ENST00000335449.6
GLDN
gliomedin
chr19_-_46476791 0.25 ENST00000263257.5
NOVA2
neuro-oncological ventral antigen 2
chr8_-_89339705 0.24 ENST00000286614.6
MMP16
matrix metallopeptidase 16 (membrane-inserted)
chrX_+_110339439 0.24 ENST00000372010.1
ENST00000519681.1
ENST00000372007.5
PAK3
p21 protein (Cdc42/Rac)-activated kinase 3
chr18_+_63418068 0.24 ENST00000397968.2
CDH7
cadherin 7, type 2
chr4_+_166300084 0.23 ENST00000402744.4
CPE
carboxypeptidase E
chr16_+_24266874 0.23 ENST00000005284.3
CACNG3
calcium channel, voltage-dependent, gamma subunit 3
chr11_-_31839488 0.21 ENST00000419022.1
ENST00000379132.3
ENST00000379129.2
PAX6
paired box 6
chr4_+_75858290 0.21 ENST00000513238.1
PARM1
prostate androgen-regulated mucin-like protein 1
chr3_+_85008089 0.21 ENST00000383699.3
CADM2
cell adhesion molecule 2
chr2_+_172950227 0.20 ENST00000341900.6
DLX1
distal-less homeobox 1
chrX_-_73834449 0.19 ENST00000332687.6
ENST00000349225.2
RLIM
ring finger protein, LIM domain interacting
chr4_-_139163491 0.17 ENST00000280612.5
SLC7A11
solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
chr6_+_97372596 0.17 ENST00000369261.4
KLHL32
kelch-like family member 32
chr1_+_50574585 0.17 ENST00000371824.1
ENST00000371823.4
ELAVL4
ELAV like neuron-specific RNA binding protein 4
chr20_-_9819479 0.17 ENST00000378423.1
ENST00000353224.5
PAK7
p21 protein (Cdc42/Rac)-activated kinase 7
chr16_-_62070305 0.17 ENST00000584337.1
CDH8
cadherin 8, type 2
chr19_-_18314836 0.16 ENST00000464076.3
ENST00000222256.4
RAB3A
RAB3A, member RAS oncogene family
chr18_+_49866496 0.16 ENST00000442544.2
DCC
deleted in colorectal carcinoma
chr5_+_57878859 0.15 ENST00000282878.4
RAB3C
RAB3C, member RAS oncogene family
chrX_+_100333709 0.15 ENST00000372930.4
TMEM35
transmembrane protein 35
chr1_+_171810606 0.15 ENST00000358155.4
ENST00000367733.2
ENST00000355305.5
ENST00000367731.1
DNM3
dynamin 3
chr14_-_25519095 0.15 ENST00000419632.2
ENST00000358326.2
ENST00000396700.1
ENST00000548724.1
STXBP6
syntaxin binding protein 6 (amisyn)
chrX_+_37865804 0.14 ENST00000297875.2
ENST00000357972.5
SYTL5
synaptotagmin-like 5
chr13_+_96743093 0.14 ENST00000376705.2
HS6ST3
heparan sulfate 6-O-sulfotransferase 3
chr2_+_166326157 0.13 ENST00000421875.1
ENST00000314499.7
ENST00000409664.1
CSRNP3
cysteine-serine-rich nuclear protein 3
chr11_+_105480793 0.13 ENST00000282499.5
ENST00000393127.2
ENST00000527669.1
GRIA4
glutamate receptor, ionotropic, AMPA 4
chr2_-_158485387 0.12 ENST00000243349.8
ACVR1C
activin A receptor, type IC
chr2_+_14775215 0.12 ENST00000581929.1
AC011897.1
Uncharacterized protein
chr2_+_14772810 0.12 ENST00000295092.2
ENST00000331243.4
FAM84A
family with sequence similarity 84, member A
chr1_+_46668994 0.12 ENST00000371980.3
LURAP1
leucine rich adaptor protein 1
chr14_-_37642016 0.11 ENST00000331299.5
SLC25A21
solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
chr7_-_86688990 0.10 ENST00000450689.2
KIAA1324L
KIAA1324-like
chr17_+_27717415 0.10 ENST00000583121.1
ENST00000261716.3
TAOK1
TAO kinase 1
chr15_-_49255632 0.10 ENST00000332408.4
SHC4
SHC (Src homology 2 domain containing) family, member 4
chr2_+_30369807 0.09 ENST00000379520.3
ENST00000379519.3
ENST00000261353.4
YPEL5
yippee-like 5 (Drosophila)
chr1_+_91966384 0.09 ENST00000430031.2
ENST00000234626.6
CDC7
cell division cycle 7
chr3_-_64211112 0.09 ENST00000295902.6
PRICKLE2
prickle homolog 2 (Drosophila)
chr4_-_53525406 0.09 ENST00000451218.2
ENST00000441222.3
USP46
ubiquitin specific peptidase 46
chr15_-_56757329 0.08 ENST00000260453.3
MNS1
meiosis-specific nuclear structural 1
chr3_-_178790057 0.08 ENST00000311417.2
ZMAT3
zinc finger, matrin-type 3
chr4_-_120988229 0.08 ENST00000296509.6
MAD2L1
MAD2 mitotic arrest deficient-like 1 (yeast)
chr4_-_153457197 0.08 ENST00000281708.4
FBXW7
F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
chr18_+_44526786 0.07 ENST00000245121.5
ENST00000356157.7
KATNAL2
katanin p60 subunit A-like 2
chr2_+_175199674 0.07 ENST00000394967.2
SP9
Sp9 transcription factor
chr18_-_65184217 0.07 ENST00000310045.7
DSEL
dermatan sulfate epimerase-like
chr11_-_106889250 0.06 ENST00000526355.2
GUCY1A2
guanylate cyclase 1, soluble, alpha 2
chr1_+_47137445 0.06 ENST00000569393.1
ENST00000334122.4
ENST00000415500.1
TEX38
testis expressed 38
chr8_+_28351707 0.06 ENST00000537916.1
ENST00000523546.1
ENST00000240093.3
FZD3
frizzled family receptor 3
chr20_-_45984401 0.06 ENST00000311275.7
ZMYND8
zinc finger, MYND-type containing 8
chr2_+_159313452 0.05 ENST00000389757.3
ENST00000389759.3
PKP4
plakophilin 4
chr7_-_130080977 0.05 ENST00000223208.5
CEP41
centrosomal protein 41kDa
chr5_+_140560980 0.05 ENST00000361016.2
PCDHB16
protocadherin beta 16
chr2_-_27886676 0.05 ENST00000337768.5
SUPT7L
suppressor of Ty 7 (S. cerevisiae)-like
chr4_-_103748880 0.05 ENST00000453744.2
ENST00000349311.8
UBE2D3
ubiquitin-conjugating enzyme E2D 3
chr6_+_163148161 0.05 ENST00000337019.3
ENST00000366889.2
PACRG
PARK2 co-regulated
chr1_+_201252580 0.05 ENST00000367324.3
ENST00000263946.3
PKP1
plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)
chr7_-_138666053 0.05 ENST00000440172.1
ENST00000422774.1
KIAA1549
KIAA1549
chr5_-_115910630 0.05 ENST00000343348.6
SEMA6A
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
chr5_-_168728103 0.05 ENST00000519560.1
SLIT3
slit homolog 3 (Drosophila)
chr13_-_73301819 0.04 ENST00000377818.3
MZT1
mitotic spindle organizing protein 1
chr3_-_185270383 0.04 ENST00000296252.4
LIPH
lipase, member H
chr18_+_59854480 0.04 ENST00000256858.6
ENST00000398130.2
KIAA1468
KIAA1468
chr20_+_56964169 0.04 ENST00000475243.1
VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C
chr8_-_72987810 0.04 ENST00000262209.4
TRPA1
transient receptor potential cation channel, subfamily A, member 1
chr5_-_107006596 0.04 ENST00000333274.6
EFNA5
ephrin-A5
chr1_-_40137710 0.04 ENST00000235628.1
NT5C1A
5'-nucleotidase, cytosolic IA
chr11_-_27528301 0.04 ENST00000524596.1
ENST00000278193.2
LIN7C
lin-7 homolog C (C. elegans)
chr8_-_77912431 0.04 ENST00000357039.4
ENST00000522527.1
PEX2
peroxisomal biogenesis factor 2
chr7_-_19157248 0.04 ENST00000242261.5
TWIST1
twist family bHLH transcription factor 1
chr9_+_82186872 0.04 ENST00000376544.3
ENST00000376520.4
TLE4
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr17_+_54911444 0.04 ENST00000284061.3
ENST00000572810.1
DGKE
diacylglycerol kinase, epsilon 64kDa
chr9_+_91003271 0.04 ENST00000375859.3
ENST00000541629.1
SPIN1
spindlin 1
chr11_+_9406169 0.04 ENST00000379719.3
ENST00000527431.1
IPO7
importin 7
chr1_-_70671216 0.03 ENST00000370952.3
LRRC40
leucine rich repeat containing 40
chr14_-_45431091 0.03 ENST00000579157.1
ENST00000396128.4
ENST00000556500.1
KLHL28
kelch-like family member 28
chr5_+_60933634 0.03 ENST00000505642.1
C5orf64
chromosome 5 open reading frame 64
chr9_-_86153218 0.03 ENST00000304195.3
ENST00000376438.1
FRMD3
FERM domain containing 3
chr8_-_72268889 0.03 ENST00000388742.4
EYA1
eyes absent homolog 1 (Drosophila)
chr14_+_90863327 0.03 ENST00000356978.4
CALM1
calmodulin 1 (phosphorylase kinase, delta)
chr3_+_145782358 0.02 ENST00000422482.1
AC107021.1
HCG1786590; PRO2533; Uncharacterized protein
chrX_-_124097620 0.02 ENST00000371130.3
ENST00000422452.2
TENM1
teneurin transmembrane protein 1
chr5_-_147162078 0.02 ENST00000507386.1
JAKMIP2
janus kinase and microtubule interacting protein 2
chr9_-_6015607 0.02 ENST00000259569.5
RANBP6
RAN binding protein 6
chr9_-_135819987 0.02 ENST00000298552.3
ENST00000403810.1
TSC1
tuberous sclerosis 1
chr2_+_198318147 0.02 ENST00000263960.2
COQ10B
coenzyme Q10 homolog B (S. cerevisiae)
chr1_-_213189108 0.02 ENST00000535388.1
ANGEL2
angel homolog 2 (Drosophila)
chr5_-_131132614 0.02 ENST00000307968.7
ENST00000307954.8
FNIP1
folliculin interacting protein 1
chr4_-_42154895 0.02 ENST00000502486.1
ENST00000504360.1
BEND4
BEN domain containing 4
chr12_+_74931551 0.02 ENST00000519948.2
ATXN7L3B
ataxin 7-like 3B
chr6_+_117586713 0.02 ENST00000352536.3
ENST00000326274.5
VGLL2
vestigial like 2 (Drosophila)
chr12_+_54943134 0.02 ENST00000243052.3
PDE1B
phosphodiesterase 1B, calmodulin-dependent
chr4_-_68995571 0.02 ENST00000356291.2
TMPRSS11F
transmembrane protease, serine 11F
chr14_-_93582148 0.02 ENST00000267615.6
ENST00000553452.1
ITPK1
inositol-tetrakisphosphate 1-kinase
chr11_-_130786400 0.02 ENST00000265909.4
SNX19
sorting nexin 19
chr7_+_12250886 0.02 ENST00000444443.1
ENST00000396667.3
TMEM106B
transmembrane protein 106B
chr20_+_47538357 0.02 ENST00000371917.4
ARFGEF2
ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
chr18_+_9913977 0.02 ENST00000400000.2
ENST00000340541.4
VAPA
VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
chrX_-_118986911 0.02 ENST00000276201.2
ENST00000345865.2
UPF3B
UPF3 regulator of nonsense transcripts homolog B (yeast)
chr12_-_56583332 0.01 ENST00000347471.4
ENST00000267064.4
ENST00000394023.3
SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
chr21_-_15755446 0.01 ENST00000544452.1
ENST00000285667.3
HSPA13
heat shock protein 70kDa family, member 13
chr1_+_206808918 0.01 ENST00000367108.3
DYRK3
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
chr19_+_11071546 0.01 ENST00000358026.2
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
chr5_+_138629417 0.01 ENST00000510056.1
ENST00000511249.1
ENST00000503811.1
ENST00000511378.1
MATR3
matrin 3
chr16_-_2264779 0.01 ENST00000333503.7
PGP
phosphoglycolate phosphatase
chr12_-_123011536 0.01 ENST00000331738.7
ENST00000354654.2
RSRC2
arginine/serine-rich coiled-coil 2
chr18_+_32558208 0.01 ENST00000436190.2
MAPRE2
microtubule-associated protein, RP/EB family, member 2
chr18_+_22040593 0.01 ENST00000256906.4
HRH4
histamine receptor H4
chrX_-_77041685 0.01 ENST00000373344.5
ENST00000395603.3
ATRX
alpha thalassemia/mental retardation syndrome X-linked
chr9_+_120466650 0.01 ENST00000355622.6
TLR4
toll-like receptor 4
chr3_+_29322803 0.00 ENST00000396583.3
ENST00000383767.2
RBMS3
RNA binding motif, single stranded interacting protein 3
chr5_+_134181625 0.00 ENST00000394976.3
C5orf24
chromosome 5 open reading frame 24
chr15_+_44719394 0.00 ENST00000260327.4
ENST00000396780.1
CTDSPL2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr8_-_122653630 0.00 ENST00000303924.4
HAS2
hyaluronan synthase 2
chr3_+_150126101 0.00 ENST00000361875.3
ENST00000361136.2
TSC22D2
TSC22 domain family, member 2

Network of associatons between targets according to the STRING database.

First level regulatory network of UGACAUC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1990926 short-term synaptic potentiation(GO:1990926)
0.1 0.2 GO:0021882 regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment(GO:0021882) cerebral cortex GABAergic interneuron fate commitment(GO:0021893) positive regulation of neural retina development(GO:0061075) positive regulation of retina development in camera-type eye(GO:1902868) positive regulation of amacrine cell differentiation(GO:1902871)
0.1 0.2 GO:1990709 maintenance of synapse structure(GO:0099558) presynaptic active zone organization(GO:1990709)
0.1 0.2 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.2 GO:0030070 insulin processing(GO:0030070)
0.0 0.3 GO:0035881 amacrine cell differentiation(GO:0035881)
0.0 0.1 GO:1901383 negative regulation of chorionic trophoblast cell proliferation(GO:1901383)
0.0 0.2 GO:0021965 spinal cord ventral commissure morphogenesis(GO:0021965)
0.0 0.4 GO:0016191 synaptic vesicle uncoating(GO:0016191)
0.0 0.2 GO:0003322 pancreatic A cell development(GO:0003322)
0.0 0.3 GO:0018095 protein polyglutamylation(GO:0018095)
0.0 0.1 GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification(GO:0015015)
0.0 0.3 GO:0008627 intrinsic apoptotic signaling pathway in response to osmotic stress(GO:0008627)
0.0 0.2 GO:0009048 dosage compensation by inactivation of X chromosome(GO:0009048)
0.0 0.1 GO:0015742 alpha-ketoglutarate transport(GO:0015742)
0.0 0.1 GO:2000639 regulation of SREBP signaling pathway(GO:2000638) negative regulation of SREBP signaling pathway(GO:2000639)
0.0 0.4 GO:0048172 regulation of short-term neuronal synaptic plasticity(GO:0048172)
0.0 0.5 GO:0060732 positive regulation of inositol phosphate biosynthetic process(GO:0060732)
0.0 0.3 GO:0090129 positive regulation of synapse maturation(GO:0090129)
0.0 0.0 GO:2000276 negative regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035359) negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276)
0.0 0.3 GO:0045162 clustering of voltage-gated sodium channels(GO:0045162)
0.0 0.1 GO:1904693 negative regulation of mitotic cell cycle, embryonic(GO:0045976) midbrain morphogenesis(GO:1904693)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.0 0.3 GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032)
0.0 0.1 GO:0048179 activin receptor complex(GO:0048179)
0.0 0.2 GO:0060201 clathrin-sculpted acetylcholine transport vesicle(GO:0060200) clathrin-sculpted acetylcholine transport vesicle membrane(GO:0060201)
0.0 0.0 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.0 0.8 GO:0032281 AMPA glutamate receptor complex(GO:0032281)
0.0 0.3 GO:0001518 voltage-gated sodium channel complex(GO:0001518)
0.0 0.1 GO:1990452 Parkin-FBXW7-Cul1 ubiquitin ligase complex(GO:1990452)
0.0 0.2 GO:0043083 synaptic cleft(GO:0043083)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0004999 vasoactive intestinal polypeptide receptor activity(GO:0004999)
0.1 0.2 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798)
0.0 0.1 GO:0038100 nodal binding(GO:0038100)
0.0 0.2 GO:0005042 netrin receptor activity(GO:0005042)
0.0 0.2 GO:0005294 neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294)
0.0 0.1 GO:0017095 heparan sulfate 6-O-sulfotransferase activity(GO:0017095)
0.0 0.3 GO:0070740 tubulin-glutamic acid ligase activity(GO:0070740)
0.0 0.1 GO:0033149 FFAT motif binding(GO:0033149)
0.0 0.3 GO:0097109 neuroligin family protein binding(GO:0097109)
0.0 0.0 GO:0005169 neurotrophin TRKB receptor binding(GO:0005169)
0.0 0.0 GO:0097604 temperature-gated cation channel activity(GO:0097604)
0.0 0.2 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.6 REACTOME ADHERENS JUNCTIONS INTERACTIONS Genes involved in Adherens junctions interactions