ISMARA results: ARID3A

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Illumina Body Map 2

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Results for ARID3A

Z-value: 1.02

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Transcription factors associated with ARID3A

Gene Symbol	Gene ID	Gene Info
ARID3A Ensembl NCBI GeneCards UniProt NextProt	ENSG00000116017.6	AT-rich interaction domain 3A

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ARID3A	hg19_v2_chr19_+_926000_926046	-0.20	2.8e-01	Click!

Activity profile of ARID3A motif

Sorted Z-values of ARID3A motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_77333117 Show fit	3.33	ENST00000477717.1	ST6GALNAC5 Ensembl NCBI GeneCards UniProt NextProt Show fit	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
chr5_+_159656437 Show fit	2.98	ENST00000402432.3	FABP6 Ensembl NCBI GeneCards UniProt NextProt Show fit	fatty acid binding protein 6, ileal
chr12_+_119772502 Show fit	2.49	ENST00000536742.1 ENST00000327554.2	CCDC60 Ensembl NCBI GeneCards UniProt NextProt Show fit	coiled-coil domain containing 60
chr3_-_172859017 Show fit	2.22	ENST00000351008.3	SPATA16 Ensembl NCBI GeneCards UniProt NextProt Show fit	spermatogenesis associated 16
chrX_-_102531717 Show fit	2.15	ENST00000372680.1	TCEAL5 Ensembl NCBI GeneCards UniProt NextProt Show fit	transcription elongation factor A (SII)-like 5
chr14_-_77737543 Show fit	2.05	ENST00000298352.4	NGB Ensembl NCBI GeneCards UniProt NextProt Show fit	neuroglobin
chrX_+_85969626 Show fit	1.87	ENST00000484479.1	DACH2 Ensembl NCBI GeneCards UniProt NextProt Show fit	dachshund homolog 2 (Drosophila)
chr17_-_39041479 Show fit	1.76	ENST00000167588.3	KRT20 Ensembl NCBI GeneCards UniProt NextProt Show fit	keratin 20
chr18_-_25739260 Show fit	1.66	ENST00000413878.1	CDH2 Ensembl NCBI GeneCards UniProt NextProt Show fit	cadherin 2, type 1, N-cadherin (neuronal)
chr19_-_46145696 Show fit	1.65	ENST00000588172.1	EML2 Ensembl NCBI GeneCards UniProt NextProt Show fit	echinoderm microtubule associated protein like 2

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of ARID3A

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	4.1	GO:0042359	vitamin D metabolic process(GO:0042359)
0.1	3.5	GO:0052695	cellular glucuronidation(GO:0052695)
1.1	3.4	GO:0044278	cell wall disruption in other organism(GO:0044278)
0.1	3.3	GO:0009312	oligosaccharide biosynthetic process(GO:0009312)
0.1	2.9	GO:0015721	bile acid and bile salt transport(GO:0015721)
0.1	2.8	GO:0015671	oxygen transport(GO:0015671)
0.0	2.3	GO:0060292	long term synaptic depression(GO:0060292)
0.1	2.2	GO:0033141	positive regulation of peptidyl-serine phosphorylation of STAT protein(GO:0033141)
0.2	2.0	GO:2000809	positive regulation of synaptic vesicle clustering(GO:2000809)
0.1	1.8	GO:0045109	intermediate filament organization(GO:0045109)

Showing 1 to 10 of 87 entries

Gene overrepresentation in cellular_component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.7	GO:0031225	anchored component of membrane(GO:0031225)
0.0	2.4	GO:0048786	presynaptic active zone(GO:0048786)
0.2	1.8	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.1	1.7	GO:0016342	catenin complex(GO:0016342)
0.0	1.7	GO:0072686	mitotic spindle(GO:0072686)
0.0	1.5	GO:0071565	nBAF complex(GO:0071565)
0.0	1.3	GO:0031201	SNARE complex(GO:0031201)
0.0	1.2	GO:0005782	peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.1	1.1	GO:0001673	male germ cell nucleus(GO:0001673)
0.0	1.1	GO:0005942	phosphatidylinositol 3-kinase complex(GO:0005942)

Showing 1 to 10 of 35 entries

Gene overrepresentation in molecular_function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.4	4.2	GO:0008386	cholesterol monooxygenase (side-chain-cleaving) activity(GO:0008386)
0.2	3.7	GO:0032052	bile acid binding(GO:0032052)
0.0	3.6	GO:0005200	structural constituent of cytoskeleton(GO:0005200)
0.1	3.5	GO:0001972	retinoic acid binding(GO:0001972)
0.2	3.4	GO:0042834	peptidoglycan binding(GO:0042834)
0.3	3.3	GO:0001665	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665)
0.1	2.8	GO:0005344	oxygen transporter activity(GO:0005344)
0.6	2.3	GO:0030305	heparanase activity(GO:0030305)
0.2	2.2	GO:0005132	type I interferon receptor binding(GO:0005132)
0.0	2.2	GO:0050699	WW domain binding(GO:0050699)

Showing 1 to 10 of 76 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.8	NABA ECM REGULATORS	Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix
0.0	3.0	NABA ECM AFFILIATED	Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins
0.0	2.0	PID LKB1 PATHWAY	LKB1 signaling events
0.0	1.7	PID NCADHERIN PATHWAY	N-cadherin signaling events
0.1	1.6	ST IL 13 PATHWAY	Interleukin 13 (IL-13) Pathway
0.0	1.5	PID NOTCH PATHWAY	Notch signaling pathway
0.0	1.2	PID CDC42 REG PATHWAY	Regulation of CDC42 activity
0.0	0.5	PID MYC PATHWAY	C-MYC pathway
0.1	0.3	PID AR NONGENOMIC PATHWAY	Nongenotropic Androgen signaling

Showing 1 to 9 of 9 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.3	REACTOME GLUCURONIDATION	Genes involved in Glucuronidation
0.2	3.0	REACTOME RECYCLING OF BILE ACIDS AND SALTS	Genes involved in Recycling of bile acids and salts
0.1	3.0	REACTOME ENDOGENOUS STEROLS	Genes involved in Endogenous sterols
0.1	2.3	REACTOME HS GAG DEGRADATION	Genes involved in HS-GAG degradation
0.1	1.8	REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE	Genes involved in Synthesis of PIPs at the Golgi membrane
0.0	1.7	REACTOME ADHERENS JUNCTIONS INTERACTIONS	Genes involved in Adherens junctions interactions
0.1	1.6	REACTOME THE ACTIVATION OF ARYLSULFATASES	Genes involved in The activation of arylsulfatases
0.0	1.6	REACTOME REGULATION OF IFNA SIGNALING	Genes involved in Regulation of IFNA signaling
0.1	1.3	REACTOME SEROTONIN RECEPTORS	Genes involved in Serotonin receptors
0.0	1.3	REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS	Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus

Showing 1 to 10 of 21 entries

Results for ARID3A

Z-value: 1.02

Motif logo

Transcription factors associated with ARID3A

Activity-expression correlation:

Activity profile of ARID3A motif

Sorted Z-values of ARID3A motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of ARID3A

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: