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Illumina Body Map 2
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Results for CCAGUGU
Z-value: 0.81
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miRNA associated with seed CCAGUGU
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr19_+_45312347 Show fit | 2.55 |
ENST00000270233.6
ENST00000591520.1 |
basal cell adhesion molecule (Lutheran blood group) |
|
| chr5_-_59189545 Show fit | 1.74 |
ENST00000340635.6
|
phosphodiesterase 4D, cAMP-specific |
|
| chr6_+_117586713 Show fit | 1.73 |
ENST00000352536.3
ENST00000326274.5 |
vestigial like 2 (Drosophila) |
|
| chr2_-_19558373 Show fit | 1.68 |
ENST00000272223.2
|
odd-skipped related transciption factor 1 |
|
| chr1_+_185703513 Show fit | 1.59 |
ENST00000271588.4
ENST00000367492.2 |
hemicentin 1 |
|
| chr20_+_48599506 Show fit | 1.56 |
ENST00000244050.2
|
snail family zinc finger 1 |
|
| chr1_+_182992545 Show fit | 1.53 |
ENST00000258341.4
|
laminin, gamma 1 (formerly LAMB2) |
|
| chr16_-_4292071 Show fit | 1.48 |
ENST00000399609.3
|
sarcalumenin |
|
| chr22_-_46933067 Show fit | 1.46 |
ENST00000262738.3
ENST00000395964.1 |
cadherin, EGF LAG seven-pass G-type receptor 1 |
|
| chr11_-_86666427 Show fit | 1.38 |
ENST00000531380.1
|
frizzled family receptor 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of CCAGUGU
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0007519 | skeletal muscle tissue development(GO:0007519) |
| 0.4 | 1.7 | GO:0023016 | osmosensory signaling pathway(GO:0007231) signal transduction by trans-phosphorylation(GO:0023016) kidney smooth muscle tissue development(GO:0072194) pattern specification involved in metanephros development(GO:0072268) |
| 0.2 | 1.7 | GO:0086024 | adrenergic receptor signaling pathway involved in positive regulation of heart rate(GO:0086024) |
| 0.2 | 1.6 | GO:0010957 | negative regulation of vitamin D biosynthetic process(GO:0010957) |
| 0.5 | 1.5 | GO:0060488 | orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060488) planar dichotomous subdivision of terminal units involved in lung branching morphogenesis(GO:0060489) lateral sprouting involved in lung morphogenesis(GO:0060490) |
| 0.1 | 1.5 | GO:0070831 | basement membrane assembly(GO:0070831) |
| 0.5 | 1.4 | GO:0061300 | cerebellum vasculature development(GO:0061300) |
| 0.4 | 1.3 | GO:1903572 | regulation of protein kinase D signaling(GO:1903570) positive regulation of protein kinase D signaling(GO:1903572) |
| 0.3 | 1.3 | GO:2000721 | positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000721) |
| 0.2 | 1.3 | GO:0001712 | ectodermal cell fate commitment(GO:0001712) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.8 | GO:0031093 | platelet alpha granule lumen(GO:0031093) |
| 0.0 | 1.9 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
| 0.0 | 1.7 | GO:0005604 | basement membrane(GO:0005604) |
| 0.3 | 1.5 | GO:0043260 | laminin-1 complex(GO:0005606) laminin-11 complex(GO:0043260) |
| 0.1 | 1.5 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
| 0.0 | 1.4 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
| 0.2 | 1.3 | GO:0034678 | integrin alpha8-beta1 complex(GO:0034678) |
| 0.0 | 1.3 | GO:0030669 | clathrin-coated endocytic vesicle membrane(GO:0030669) |
| 0.1 | 1.2 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
| 0.1 | 1.2 | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.0 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
| 0.0 | 2.6 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
| 0.8 | 2.5 | GO:0005055 | laminin receptor activity(GO:0005055) |
| 0.1 | 2.4 | GO:0045499 | chemorepellent activity(GO:0045499) |
| 0.0 | 2.1 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
| 0.0 | 2.0 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
| 0.1 | 1.7 | GO:0031698 | beta-2 adrenergic receptor binding(GO:0031698) |
| 0.0 | 1.5 | GO:0051087 | chaperone binding(GO:0051087) |
| 0.2 | 1.3 | GO:0043183 | vascular endothelial growth factor receptor 1 binding(GO:0043183) |
| 0.4 | 1.2 | GO:0070320 | inward rectifier potassium channel inhibitor activity(GO:0070320) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 2.7 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
| 0.0 | 1.9 | PID ILK PATHWAY | Integrin-linked kinase signaling |
| 0.0 | 1.8 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 1.5 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
| 0.1 | 1.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 1.2 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
| 0.0 | 1.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 1.1 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
| 0.0 | 1.1 | NABA COLLAGENS | Genes encoding collagen proteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
| 0.0 | 2.9 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
| 0.0 | 2.2 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
| 0.0 | 1.7 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
| 0.0 | 1.7 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
| 0.1 | 1.3 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
| 0.1 | 1.3 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.0 | 1.2 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
| 0.0 | 1.1 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
| 0.0 | 1.0 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |