Illumina Body Map 2
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
RFX5 | hg19_v2_chr1_-_151319283_151319314 | 0.41 | 1.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_+_142020496 Show fit | 4.98 |
ENST00000390381.3
|
T cell receptor beta variable 5-1 |
|
chr6_-_32784687 Show fit | 4.59 |
ENST00000447394.1
ENST00000438763.2 |
major histocompatibility complex, class II, DO beta |
|
chr22_+_44576770 Show fit | 4.56 |
ENST00000444313.3
ENST00000416291.1 |
parvin, gamma |
|
chr6_-_32731243 Show fit | 4.10 |
ENST00000427449.1
ENST00000411527.1 |
major histocompatibility complex, class II, DQ beta 2 |
|
chr6_-_32498046 Show fit | 3.89 |
ENST00000374975.3
|
major histocompatibility complex, class II, DR beta 5 |
|
chr22_+_44577237 Show fit | 3.59 |
ENST00000415224.1
ENST00000417767.1 |
parvin, gamma |
|
chr6_-_32634425 Show fit | 3.58 |
ENST00000399082.3
ENST00000399079.3 ENST00000374943.4 ENST00000434651.2 |
major histocompatibility complex, class II, DQ beta 1 |
|
chr6_-_32731299 Show fit | 3.56 |
ENST00000435145.2
ENST00000437316.2 |
major histocompatibility complex, class II, DQ beta 2 |
|
chr6_-_32908765 Show fit | 2.86 |
ENST00000416244.2
|
major histocompatibility complex, class II, DM beta |
|
chr6_-_32908792 Show fit | 2.76 |
ENST00000418107.2
|
major histocompatibility complex, class II, DM beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 17.8 | GO:0031295 | T cell costimulation(GO:0031295) |
2.2 | 10.8 | GO:0002399 | MHC class II protein complex assembly(GO:0002399) |
0.0 | 7.3 | GO:0031532 | actin cytoskeleton reorganization(GO:0031532) |
0.1 | 5.8 | GO:0006521 | regulation of cellular amino acid metabolic process(GO:0006521) |
1.5 | 4.6 | GO:0002581 | negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) |
0.2 | 4.4 | GO:0046007 | negative regulation of activated T cell proliferation(GO:0046007) |
0.0 | 2.9 | GO:0036092 | phosphatidylinositol-3-phosphate biosynthetic process(GO:0036092) |
0.5 | 2.6 | GO:0002906 | mature B cell apoptotic process(GO:0002901) regulation of mature B cell apoptotic process(GO:0002905) negative regulation of mature B cell apoptotic process(GO:0002906) |
0.0 | 2.4 | GO:0006305 | DNA alkylation(GO:0006305) DNA methylation(GO:0006306) |
0.1 | 2.3 | GO:0015939 | pantothenate metabolic process(GO:0015939) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 35.8 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.7 | 6.0 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.0 | 2.6 | GO:0005637 | nuclear inner membrane(GO:0005637) |
0.1 | 2.4 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.3 | 2.2 | GO:0042825 | TAP complex(GO:0042825) |
0.3 | 1.6 | GO:0031905 | early endosome lumen(GO:0031905) |
0.1 | 1.3 | GO:0042611 | MHC protein complex(GO:0042611) |
0.1 | 0.9 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
0.2 | 0.5 | GO:0097543 | ciliary inversin compartment(GO:0097543) |
0.0 | 0.4 | GO:0070652 | HAUS complex(GO:0070652) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 15.8 | GO:0032395 | MHC class II receptor activity(GO:0032395) |
0.3 | 11.6 | GO:0042605 | peptide antigen binding(GO:0042605) |
0.3 | 8.1 | GO:0023026 | MHC class II protein complex binding(GO:0023026) |
0.2 | 6.0 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.5 | 2.9 | GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity(GO:0016316) inositol-1,3,4-trisphosphate 4-phosphatase activity(GO:0017161) inositol-3,4-bisphosphate 4-phosphatase activity(GO:0052828) |
0.5 | 2.6 | GO:0042289 | MHC class II protein binding(GO:0042289) |
0.4 | 2.3 | GO:0017159 | pantetheine hydrolase activity(GO:0017159) |
0.1 | 1.3 | GO:0032393 | MHC class I receptor activity(GO:0032393) |
0.0 | 1.1 | GO:0030296 | protein tyrosine kinase activator activity(GO:0030296) |
0.1 | 1.0 | GO:0008240 | tripeptidyl-peptidase activity(GO:0008240) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.2 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.0 | 2.7 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 2.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.0 | 1.6 | PID CD8 TCR DOWNSTREAM PATHWAY | Downstream signaling in naïve CD8+ T cells |
0.0 | 1.1 | PID MYC PATHWAY | C-MYC pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.3 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.4 | 9.3 | REACTOME TRANSLOCATION OF ZAP 70 TO IMMUNOLOGICAL SYNAPSE | Genes involved in Translocation of ZAP-70 to Immunological synapse |
0.1 | 8.1 | REACTOME ER PHAGOSOME PATHWAY | Genes involved in ER-Phagosome pathway |
0.1 | 2.9 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |
0.2 | 1.6 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |
0.1 | 1.1 | REACTOME REGULATION OF APOPTOSIS | Genes involved in Regulation of Apoptosis |
0.0 | 1.0 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 0.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.0 | 0.8 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.0 | 0.3 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |