hg19_v2_chr1_+_205012293_205012326	3.23449	AGCCCUU	ENST00000331830.4|CNTN2|ENSG00000184144.5|contactin 2 (axonal)
hg19_v2_chr9_-_19786926_19786926	2.69607	AGCCCUU	ENST00000341998.2|SLC24A2|ENSG00000155886.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 	ENST00000286344.3|SLC24A2|ENSG00000155886.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
hg19_v2_chr1_+_181452678_181452716	2.61367	AGCCCUU	ENST00000367570.1|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000526775.1|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000357570.5|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000358338.5|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit 	ENST00000367567.4|CACNA1E|ENSG00000198216.6|calcium channel, voltage-dependent, R type, alpha 1E subunit
hg19_v2_chr2_+_73144604_73144654	2.30409	AGCCCUU	ENST00000258106.6|EMX1|ENSG00000135638.9|empty spiracles homeobox 1
hg19_v2_chr5_+_161274685_161274747	2.13592	AGCCCUU	ENST00000428797.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr1_-_33338076_33338105	1.95533	AGCCCUU	ENST00000496770.1|FNDC5|ENSG00000160097.11|fibronectin type III domain containing 5
hg19_v2_chr11_-_123525289_123525341	1.91706	AGCCCUU	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr6_+_150464155_150464222	1.89764	AGCCCUU	ENST00000361131.4|PPP1R14C|ENSG00000198729.4|protein phosphatase 1, regulatory (inhibitor) subunit 14C
hg19_v2_chr17_+_43971643_43971748	1.86767	AGCCCUU	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr11_+_123396528_123396566	1.79702	AGCCCUU	ENST00000322282.7|GRAMD1B|ENSG00000023171.10|GRAM domain containing 1B 	ENST00000529750.1|GRAMD1B|ENSG00000023171.10|GRAM domain containing 1B
hg19_v2_chr9_-_101471479_101471522	1.72455	AGCCCUU	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chr8_-_139509065_139509113	1.69772	AGCCCUU	ENST00000395297.1|FAM135B|ENSG00000147724.7|family with sequence similarity 135, member B
hg19_v2_chr14_-_24047965_24048079	1.66266	AGCCCUU	ENST00000397118.3|JPH4|ENSG00000092051.12|junctophilin 4 	ENST00000356300.4|JPH4|ENSG00000092051.12|junctophilin 4
hg19_v2_chr8_+_1449532_1449532	1.60125	AGCCCUU	ENST00000421627.2|DLGAP2|ENSG00000198010.7|discs, large (Drosophila) homolog-associated protein 2
hg19_v2_chrX_-_13956737_13956808	1.56896	AGCCCUU	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr6_+_44238203_44238222	1.53979	AGCCCUU	ENST00000451188.2|TMEM151B|ENSG00000178233.13|transmembrane protein 151B
hg19_v2_chr1_-_41131326_41131400	1.5356	AGCCCUU	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr5_-_136834982_136835037	1.44694	AGCCCUU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr19_+_54466179_54466294	1.44373	AGCCCUU	ENST00000270458.2|CACNG8|ENSG00000142408.2|calcium channel, voltage-dependent, gamma subunit 8
hg19_v2_chr19_-_55954230_55954230	1.42068	AGCCCUU	ENST00000376325.4|SHISA7|ENSG00000187902.7|shisa family member 7
hg19_v2_chr19_-_11591848_11591865	1.41855	AGCCCUU	ENST00000359227.3|ELAVL3|ENSG00000196361.5|ELAV like neuron-specific RNA binding protein 3
hg19_v2_chr14_+_53019822_53019873	1.32481	AGCCCUU	ENST00000321662.6|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr13_-_108518986_108519083	1.29714	AGCCCUU	ENST00000375915.2|FAM155A|ENSG00000204442.2|family with sequence similarity 155, member A
hg19_v2_chr6_-_136871957_136872006	1.28935	AGCCCUU	ENST00000354570.3|MAP7|ENSG00000135525.14|microtubule-associated protein 7
hg19_v2_chr17_+_11144580_11144740	1.27283	AGCCCUU	ENST00000441885.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000432116.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000409168.3|SHISA6|ENSG00000188803.10|shisa family member 6
hg19_v2_chr16_+_28303804_28303864	1.18193	AGCCCUU	ENST00000341901.4|SBK1|ENSG00000188322.4|SH3 domain binding kinase 1
hg19_v2_chr6_-_46293378_46293415	1.12351	AGCCCUU	ENST00000330430.6|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr6_+_72596604_72596727	1.1002	AGCCCUU	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr15_-_83316254_83316368	1.09282	AGCCCUU	ENST00000567678.1|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1 	ENST00000450751.2|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1
hg19_v2_chr11_-_1771797_1771832	1.03189	AGCCCUU	ENST00000340134.4|IFITM10|ENSG00000244242.1|interferon induced transmembrane protein 10
hg19_v2_chr13_-_25746416_25746433	0.919587	AGCCCUU	ENST00000515384.1|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2 	ENST00000357816.2|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr11_+_61520075_61520136	0.916723	AGCCCUU	ENST00000278836.5|MYRF|ENSG00000124920.9|myelin regulatory factor
hg19_v2_chr8_-_125384927_125384952	0.897729	AGCCCUU	ENST00000297632.6|TMEM65|ENSG00000164983.6|transmembrane protein 65
hg19_v2_chr19_+_40005753_40005787	0.855514	AGCCCUU	ENST00000335426.4|SELV|ENSG00000186838.9|Selenoprotein V  	ENST00000423711.1|SELV|ENSG00000186838.9|Selenoprotein V
hg19_v2_chr4_-_46126093_46126106	0.841983	AGCCCUU	ENST00000295452.4|GABRG1|ENSG00000163285.7|gamma-aminobutyric acid (GABA) A receptor, gamma 1
hg19_v2_chr20_-_48099182_48099214	0.83039	AGCCCUU	ENST00000371741.4|KCNB1|ENSG00000158445.7|potassium voltage-gated channel, Shab-related subfamily, member 1
hg19_v2_chr5_+_80256453_80256506	0.826242	AGCCCUU	ENST00000265080.4|RASGRF2|ENSG00000113319.7|Ras protein-specific guanine nucleotide-releasing factor 2
hg19_v2_chr16_+_66878814_66878843	0.811106	AGCCCUU	ENST00000394069.3|CA7|ENSG00000168748.9|carbonic anhydrase VII
hg19_v2_chrX_+_110339439_110339605	0.806906	AGCCCUU	ENST00000372010.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000519681.1|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3 	ENST00000372007.5|PAK3|ENSG00000077264.10|p21 protein (Cdc42/Rac)-activated kinase 3
hg19_v2_chr9_+_140772226_140772386	0.796833	AGCCCUU	ENST00000277551.2|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371372.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000277549.5|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371363.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371357.1|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit 	ENST00000371355.4|CACNA1B|ENSG00000148408.8|calcium channel, voltage-dependent, N type, alpha 1B subunit
hg19_v2_chr17_+_11924129_11924200	0.776877	AGCCCUU	ENST00000353533.5|MAP2K4|ENSG00000065559.10|mitogen-activated protein kinase kinase 4 	ENST00000415385.3|MAP2K4|ENSG00000065559.10|mitogen-activated protein kinase kinase 4
hg19_v2_chr17_+_61086917_61086921	0.774797	AGCCCUU	ENST00000424789.2|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 	ENST00000389520.4|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr18_-_40857493_40857615	0.768508	AGCCCUU	ENST00000255224.3|SYT4|ENSG00000132872.7|synaptotagmin IV
hg19_v2_chr5_+_10564432_10564580	0.742189	AGCCCUU	ENST00000296657.5|ANKRD33B|ENSG00000164236.7|ankyrin repeat domain 33B
hg19_v2_chr1_-_20812690_20812763	0.739152	AGCCCUU	ENST00000375078.3|CAMK2N1|ENSG00000162545.5|calcium/calmodulin-dependent protein kinase II inhibitor 1
hg19_v2_chr15_-_48470558_48470714	0.727096	AGCCCUU	ENST00000324324.7|MYEF2|ENSG00000104177.13|myelin expression factor 2
hg19_v2_chr17_+_4487294_4487307	0.695693	AGCCCUU	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr15_-_83621435_83621495	0.672522	AGCCCUU	ENST00000450735.2|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000426485.1|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000399166.2|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila) 	ENST00000304231.8|HOMER2|ENSG00000103942.8|homer homolog 2 (Drosophila)
hg19_v2_chr2_+_187558698_187558795	0.662767	AGCCCUU	ENST00000304698.5|FAM171B|ENSG00000144369.8|family with sequence similarity 171, member B
hg19_v2_chr8_-_89339705_89339721	0.655322	AGCCCUU	ENST00000286614.6|MMP16|ENSG00000156103.11|matrix metallopeptidase 16 (membrane-inserted)
hg19_v2_chr12_-_117319236_117319252	0.651047	AGCCCUU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr2_-_122407097_122407163	0.638772	AGCCCUU	ENST00000409078.3|CLASP1|ENSG00000074054.13|cytoplasmic linker associated protein 1
hg19_v2_chr14_+_64932210_64932226	0.627894	AGCCCUU	ENST00000394718.4|AKAP5|ENSG00000179841.8|A kinase (PRKA) anchor protein 5
hg19_v2_chr12_-_14133053_14133159	0.627197	AGCCCUU	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr11_-_105892937_105893130	0.621899	AGCCCUU	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr2_-_152955537_152955593	0.6172	AGCCCUU	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr10_-_116286656_116286693	0.614115	AGCCCUU	ENST00000428430.1|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000369266.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1 	ENST00000392952.3|ABLIM1|ENSG00000099204.14|actin binding LIM protein 1
hg19_v2_chr12_+_56367697_56367893	0.575374	AGCCCUU	ENST00000553116.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000360299.5|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000548068.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000549915.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000551459.1|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family 	ENST00000448789.2|RAB5B|ENSG00000111540.11|RAB5B, member RAS oncogene family
hg19_v2_chr10_-_118764862_118764887	0.571584	AGCCCUU	ENST00000260777.10|KIAA1598|ENSG00000187164.13|KIAA1598
hg19_v2_chr9_-_86153218_86153461	0.542914	AGCCCUU	ENST00000304195.3|FRMD3|ENSG00000172159.11|FERM domain containing 3 	ENST00000376438.1|FRMD3|ENSG00000172159.11|FERM domain containing 3
hg19_v2_chr6_+_96463840_96463892	0.541776	AGCCCUU	ENST00000302103.5|FUT9|ENSG00000172461.6|fucosyltransferase 9 (alpha (1,3) fucosyltransferase)
hg19_v2_chr5_+_118407053_118407239	0.535312	AGCCCUU	ENST00000311085.8|DMXL1|ENSG00000172869.10|Dmx-like 1 	ENST00000539542.1|DMXL1|ENSG00000172869.10|Dmx-like 1
hg19_v2_chr11_+_120195992_120196023	0.532466	AGCCCUU	ENST00000314475.2|TMEM136|ENSG00000181264.4|transmembrane protein 136 	ENST00000529187.1|TMEM136|ENSG00000181264.4|transmembrane protein 136
hg19_v2_chr8_+_104152922_104152992	0.520444	AGCCCUU	ENST00000309982.5|BAALC|ENSG00000164929.12|brain and acute leukemia, cytoplasmic 	ENST00000438105.2|BAALC|ENSG00000164929.12|brain and acute leukemia, cytoplasmic 	ENST00000297574.6|BAALC|ENSG00000164929.12|brain and acute leukemia, cytoplasmic
hg19_v2_chr4_+_72204755_72204778	0.516997	AGCCCUU	ENST00000512686.1|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4 	ENST00000340595.3|SLC4A4|ENSG00000080493.9|solute carrier family 4 (sodium bicarbonate cotransporter), member 4
hg19_v2_chr1_-_166944652_166944733	0.515176	AGCCCUU	ENST00000528703.1|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2 	ENST00000525740.1|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2 	ENST00000529387.1|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2 	ENST00000469934.2|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2 	ENST00000529071.1|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2 	ENST00000526687.1|ILDR2|ENSG00000143195.8|immunoglobulin-like domain containing receptor 2
hg19_v2_chr19_+_48898132_48898132	0.511798	AGCCCUU	ENST00000263269.3|GRIN2D|ENSG00000105464.3|glutamate receptor, ionotropic, N-methyl D-aspartate 2D
hg19_v2_chr3_+_179370517_179370543	0.506037	AGCCCUU	ENST00000263966.3|USP13|ENSG00000058056.4|ubiquitin specific peptidase 13 (isopeptidase T-3)
hg19_v2_chr7_-_6388537_6388611	0.498804	AGCCCUU	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr22_+_40390930_40390994	0.494771	AGCCCUU	ENST00000333407.6|FAM83F|ENSG00000133477.12|family with sequence similarity 83, member F
hg19_v2_chr5_+_65222299_65222361	0.493755	AGCCCUU	ENST00000284037.5|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr4_+_6784401_6784510	0.493198	AGCCCUU	ENST00000425103.1|KIAA0232|ENSG00000170871.7|KIAA0232 	ENST00000307659.5|KIAA0232|ENSG00000170871.7|KIAA0232
hg19_v2_chr13_-_23949671_23949702	0.490356	AGCCCUU	ENST00000402364.1|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr16_-_4292071_4292088	0.489204	AGCCCUU	ENST00000399609.3|SRL|ENSG00000185739.9|sarcalumenin
hg19_v2_chr19_+_44455368_44455397	0.488659	AGCCCUU	ENST00000591168.1|ZNF221|ENSG00000159905.10|zinc finger protein 221 	ENST00000587682.1|ZNF221|ENSG00000159905.10|zinc finger protein 221 	ENST00000251269.5|ZNF221|ENSG00000159905.10|zinc finger protein 221
hg19_v2_chr20_-_41818373_41818527	0.478522	AGCCCUU	ENST00000373187.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000356100.2|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373184.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373190.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T
hg19_v2_chr11_-_22851367_22851411	0.478429	AGCCCUU	ENST00000354193.4|SVIP|ENSG00000198168.4|small VCP/p97-interacting protein
hg19_v2_chr9_-_73736511_73736546	0.475805	AGCCCUU	ENST00000377110.3|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377111.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr22_+_29279552_29279586	0.468911	AGCCCUU	ENST00000544604.2|ZNRF3|ENSG00000183579.11|zinc and ring finger 3
hg19_v2_chr12_-_4758159_4758232	0.461713	AGCCCUU	ENST00000545990.2|AKAP3|ENSG00000111254.3|A kinase (PRKA) anchor protein 3
hg19_v2_chr3_-_114790179_114790222	0.461183	AGCCCUU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr18_+_49866496_49866548	0.459711	AGCCCUU	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chrX_+_144908928_144908928	0.457208	AGCCCUU	ENST00000408967.2|TMEM257|ENSG00000221870.2|transmembrane protein 257
hg19_v2_chr2_-_180129484_180129574	0.454513	AGCCCUU	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chr11_+_121322832_121322912	0.446466	AGCCCUU	ENST00000260197.7|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr22_-_22863466_22863505	0.445437	AGCCCUU	ENST00000406426.1|ZNF280B|ENSG00000198477.3|zinc finger protein 280B 	ENST00000360412.2|ZNF280B|ENSG00000198477.3|zinc finger protein 280B
hg19_v2_chr2_-_54087066_54087297	0.438617	AGCCCUU	ENST00000394705.2|GPR75|ENSG00000119737.5|G protein-coupled receptor 75 	ENST00000352846.3|GPR75-ASB3|ENSG00000115239.17|GPR75-ASB3 readthrough 	ENST00000406625.2|ASB3|ENSG00000270898.1|Ankyrin repeat and SOCS box protein 3
hg19_v2_chr17_+_56160768_56160786	0.432901	AGCCCUU	ENST00000579991.2|DYNLL2|ENSG00000264364.2|dynein, light chain, LC8-type 2
hg19_v2_chr1_-_231560790_231560790	0.427749	AGCCCUU	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr2_+_153191706_153191751	0.427269	AGCCCUU	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr4_-_76439596_76439643	0.425822	AGCCCUU	ENST00000451788.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase 	ENST00000512706.1|RCHY1|ENSG00000163743.9|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr16_+_19535133_19535231	0.421778	AGCCCUU	ENST00000396212.2|CCP110|ENSG00000103540.12|centriolar coiled coil protein 110kDa 	ENST00000381396.5|CCP110|ENSG00000103540.12|centriolar coiled coil protein 110kDa
hg19_v2_chrX_+_151806637_151806637	0.421614	AGCCCUU	ENST00000370306.2|GABRQ|ENSG00000147402.7|gamma-aminobutyric acid (GABA) A receptor, theta
hg19_v2_chr4_+_85504075_85504132	0.421246	AGCCCUU	ENST00000295887.5|CDS1|ENSG00000163624.5|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
hg19_v2_chr5_+_65018017_65018088	0.416515	AGCCCUU	ENST00000380985.5|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family) 	ENST00000502464.1|NLN|ENSG00000123213.18|neurolysin (metallopeptidase M3 family)
hg19_v2_chr13_+_51796497_51796517	0.400582	AGCCCUU	ENST00000322475.8|FAM124A|ENSG00000150510.11|family with sequence similarity 124A 	ENST00000280057.6|FAM124A|ENSG00000150510.11|family with sequence similarity 124A
hg19_v2_chr1_+_110527308_110527349	0.40001	AGCCCUU	ENST00000369799.5|AHCYL1|ENSG00000168710.13|adenosylhomocysteinase-like 1
hg19_v2_chr14_+_101193164_101193241	0.398241	AGCCCUU	ENST00000341267.4|DLK1|ENSG00000185559.9|delta-like 1 homolog (Drosophila)
hg19_v2_chr7_-_71801980_71802013	0.393116	AGCCCUU	ENST00000329008.5|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr17_-_38821373_38821440	0.381637	AGCCCUU	ENST00000394052.3|KRT222|ENSG00000213424.4|keratin 222
hg19_v2_chr1_+_231664390_231664479	0.374815	AGCCCUU	ENST00000366639.4|TSNAX|ENSG00000116918.9|translin-associated factor X 	ENST00000413309.2|TSNAX|ENSG00000116918.9|translin-associated factor X
hg19_v2_chr22_+_39966758_39966758	0.369191	AGCCCUU	ENST00000407673.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000401624.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000404898.1|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000402142.3|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000336649.4|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit 	ENST00000400164.3|CACNA1I|ENSG00000100346.13|calcium channel, voltage-dependent, T type, alpha 1I subunit
hg19_v2_chr12_+_48166978_48167047	0.368827	AGCCCUU	ENST00000442218.2|SLC48A1|ENSG00000211584.9|solute carrier family 48 (heme transporter), member 1
hg19_v2_chr11_-_117186946_117186981	0.367801	AGCCCUU	ENST00000313005.6|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1 	ENST00000528053.1|BACE1|ENSG00000186318.12|beta-site APP-cleaving enzyme 1
hg19_v2_chr1_+_51701924_51702001	0.357426	AGCCCUU	ENST00000242719.3|RNF11|ENSG00000123091.4|ring finger protein 11
hg19_v2_chr1_-_27816556_27816572	0.353986	AGCCCUU	ENST00000536657.1|WASF2|ENSG00000158195.6|WAS protein family, member 2
hg19_v2_chr21_-_39288743_39288765	0.353576	AGCCCUU	ENST00000609713.1|KCNJ6|ENSG00000157542.8|potassium inwardly-rectifying channel, subfamily J, member 6
hg19_v2_chr1_-_235292250_235292261	0.34101	AGCCCUU	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr20_+_33292068_33292164	0.33216	AGCCCUU	ENST00000374810.3|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000374809.2|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000451665.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr1_-_43833628_43833703	0.329943	AGCCCUU	ENST00000413844.2|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1 	ENST00000372458.3|ELOVL1|ENSG00000066322.8|ELOVL fatty acid elongase 1
hg19_v2_chr14_-_34420259_34420291	0.31421	AGCCCUU	ENST00000250457.3|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3 	ENST00000547327.2|EGLN3|ENSG00000129521.9|egl-9 family hypoxia-inducible factor 3
hg19_v2_chr3_+_32147997_32148009	0.312897	AGCCCUU	ENST00000282541.5|GPD1L|ENSG00000152642.6|glycerol-3-phosphate dehydrogenase 1-like
hg19_v2_chr1_-_51984908_51984952	0.302362	AGCCCUU	ENST00000371730.2|EPS15|ENSG00000085832.12|epidermal growth factor receptor pathway substrate 15
hg19_v2_chr1_-_212004090_212004168	0.300403	AGCCCUU	ENST00000366997.4|LPGAT1|ENSG00000123684.8|lysophosphatidylglycerol acyltransferase 1
hg19_v2_chr12_+_69864129_69864222	0.290278	AGCCCUU	ENST00000547219.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000299293.2|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549921.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550316.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000548154.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000547414.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550389.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550937.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000549092.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2 	ENST00000550169.1|FRS2|ENSG00000166225.4|fibroblast growth factor receptor substrate 2
hg19_v2_chr14_-_45431091_45431175	0.289697	AGCCCUU	ENST00000579157.1|KLHL28|ENSG00000179454.9|kelch-like family member 28 	ENST00000396128.4|KLHL28|ENSG00000179454.9|kelch-like family member 28 	ENST00000556500.1|KLHL28|ENSG00000179454.9|kelch-like family member 28
hg19_v2_chr9_+_133971909_133971943	0.285977	AGCCCUU	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr11_+_7273181_7273223	0.283066	AGCCCUU	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chr2_-_172750733_172750762	0.282006	AGCCCUU	ENST00000392592.4|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12 	ENST00000422440.2|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12
hg19_v2_chr4_-_87281224_87281375	0.277175	AGCCCUU	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr5_-_43313574_43313614	0.27204	AGCCCUU	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr3_+_38495333_38495422	0.26908	AGCCCUU	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr15_+_79724858_79724858	0.264828	AGCCCUU	ENST00000305428.3|KIAA1024|ENSG00000169330.4|KIAA1024
hg19_v2_chr1_-_220445757_220445819	0.258715	AGCCCUU	ENST00000358951.2|RAB3GAP2|ENSG00000118873.11|RAB3 GTPase activating protein subunit 2 (non-catalytic)
hg19_v2_chr15_-_73925651_73925773	0.247033	AGCCCUU	ENST00000545878.1|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000287226.8|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000345330.4|NPTN|ENSG00000156642.12|neuroplastin
hg19_v2_chr10_+_72972281_72972336	0.244662	AGCCCUU	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr17_-_73775839_73775868	0.241346	AGCCCUU	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr9_+_129567282_129567353	0.233972	AGCCCUU	ENST00000449886.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000373464.4|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43 	ENST00000450858.1|ZBTB43|ENSG00000169155.5|zinc finger and BTB domain containing 43
hg19_v2_chr16_-_2246436_2246526	0.232344	AGCCCUU	ENST00000343516.6|CASKIN1|ENSG00000167971.14|CASK interacting protein 1
hg19_v2_chr15_+_50716576_50716624	0.232267	AGCCCUU	ENST00000560297.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000307179.4|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000396444.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000433963.1|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8 	ENST00000425032.3|USP8|ENSG00000138592.9|ubiquitin specific peptidase 8
hg19_v2_chr2_+_113239710_113239753	0.227921	AGCCCUU	ENST00000233336.6|TTL|ENSG00000114999.7|tubulin tyrosine ligase
hg19_v2_chr5_+_10353780_10353890	0.227851	AGCCCUU	ENST00000449913.2|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000503788.1|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 	ENST00000274140.5|MARCH6|ENSG00000145495.10|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase
hg19_v2_chr2_-_70995307_70995344	0.22164	AGCCCUU	ENST00000264436.4|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000355733.3|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000447731.2|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000430656.1|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000413157.2|ADD2|ENSG00000075340.18|adducin 2 (beta)
hg19_v2_chr5_-_114880533_114880591	0.218109	AGCCCUU	ENST00000274457.3|FEM1C|ENSG00000145780.6|fem-1 homolog c (C. elegans)
hg19_v2_chr12_-_56583332_56583369	0.217204	AGCCCUU	ENST00000347471.4|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENST00000267064.4|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 	ENST00000394023.3|SMARCC2|ENSG00000139613.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
hg19_v2_chr6_-_146135880_146135952	0.21473	AGCCCUU	ENST00000237281.4|FBXO30|ENSG00000118496.4|F-box protein 30
hg19_v2_chr2_+_45878790_45878913	0.211389	AGCCCUU	ENST00000306156.3|PRKCE|ENSG00000171132.9|protein kinase C, epsilon
hg19_v2_chr4_-_68620053_68620112	0.202846	AGCCCUU	ENST00000420975.2|GNRHR|ENSG00000109163.6|gonadotropin-releasing hormone receptor 	ENST00000226413.4|GNRHR|ENSG00000109163.6|gonadotropin-releasing hormone receptor
hg19_v2_chr6_-_108279369_108279422	0.200125	AGCCCUU	ENST00000369002.4|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr9_+_129089088_129089163	0.198459	AGCCCUU	ENST00000361171.3|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B 	ENST00000545391.1|MVB12B|ENSG00000196814.10|multivesicular body subunit 12B
hg19_v2_chr1_-_51425902_51425976	0.196592	AGCCCUU	ENST00000396153.2|FAF1|ENSG00000185104.15|Fas (TNFRSF6) associated factor 1
hg19_v2_chr4_-_36246060_36246167	0.193259	AGCCCUU	ENST00000303965.4|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr6_+_126277842_126277993	0.191335	AGCCCUU	ENST00000229633.5|HINT3|ENSG00000111911.5|histidine triad nucleotide binding protein 3
hg19_v2_chr14_-_35099315_35099369	0.190283	AGCCCUU	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr8_-_81787006_81787031	0.188411	AGCCCUU	ENST00000327835.3|ZNF704|ENSG00000164684.9|zinc finger protein 704
hg19_v2_chr2_+_241375069_241375136	0.187458	AGCCCUU	ENST00000264039.2|GPC1|ENSG00000063660.4|glypican 1
hg19_v2_chr5_-_107006596_107006651	0.18388	AGCCCUU	ENST00000333274.6|EFNA5|ENSG00000184349.8|ephrin-A5
hg19_v2_chr4_-_170192185_170192256	0.179612	AGCCCUU	ENST00000284637.9|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr12_+_121837844_121837892	0.177005	AGCCCUU	ENST00000361234.5|RNF34|ENSG00000170633.12|ring finger protein 34, E3 ubiquitin protein ligase
hg19_v2_chr7_+_44240520_44240652	0.173914	AGCCCUU	ENST00000496112.1|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae) 	ENST00000223369.2|YKT6|ENSG00000106636.3|YKT6 v-SNARE homolog (S. cerevisiae)
hg19_v2_chr6_+_147525541_147525566	0.173102	AGCCCUU	ENST00000367481.3|STXBP5|ENSG00000164506.10|syntaxin binding protein 5 (tomosyn) 	ENST00000546097.1|STXBP5|ENSG00000164506.10|syntaxin binding protein 5 (tomosyn)
hg19_v2_chr10_+_11206925_11206993	0.168301	AGCCCUU	ENST00000354440.2|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000315874.4|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2 	ENST00000427450.1|CELF2|ENSG00000048740.13|CUGBP, Elav-like family member 2
hg19_v2_chr14_-_31676964_31677017	0.167066	AGCCCUU	ENST00000553700.1|HECTD1|ENSG00000092148.8|HECT domain containing E3 ubiquitin protein ligase 1
hg19_v2_chr4_+_41937131_41937211	0.166742	AGCCCUU	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr3_-_46249878_46249905	0.165222	AGCCCUU	ENST00000296140.3|CCR1|ENSG00000163823.3|chemokine (C-C motif) receptor 1
hg19_v2_chr8_-_116681221_116681236	0.163693	AGCCCUU	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr9_-_38424443_38424458	0.162721	AGCCCUU	ENST00000377694.1|IGFBPL1|ENSG00000137142.4|insulin-like growth factor binding protein-like 1
hg19_v2_chr1_+_77333117_77333139	0.159264	AGCCCUU	ENST00000477717.1|ST6GALNAC5|ENSG00000117069.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
hg19_v2_chrX_-_119077695_119077757	0.157556	AGCCCUU	ENST00000371410.3|NKAP|ENSG00000101882.5|NFKB activating protein
hg19_v2_chr15_+_33603147_33603187	0.154398	AGCCCUU	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr10_-_115904361_115904375	0.151872	AGCCCUU	ENST00000428953.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118 	ENST00000543782.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118
hg19_v2_chr3_-_141868357_141868393	0.147221	AGCCCUU	ENST00000489671.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000475734.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000467072.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2) 	ENST00000499676.2|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr12_-_81331697_81331733	0.144372	AGCCCUU	ENST00000552864.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr2_-_230933709_230933720	0.142333	AGCCCUU	ENST00000436869.1|SLC16A14|ENSG00000163053.6|solute carrier family 16, member 14 	ENST00000295190.4|SLC16A14|ENSG00000163053.6|solute carrier family 16, member 14
hg19_v2_chr15_+_63569731_63569783	0.138359	AGCCCUU	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr6_+_37321748_37321819	0.136087	AGCCCUU	ENST00000373479.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase 	ENST00000394443.4|RNF8|ENSG00000112130.12|ring finger protein 8, E3 ubiquitin protein ligase
hg19_v2_chr1_+_246729724_246729794	0.13379	AGCCCUU	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr16_+_69599861_69599887	0.131237	AGCCCUU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr12_-_49110613_49110681	0.130052	AGCCCUU	ENST00000261900.3|CCNT1|ENSG00000129315.5|cyclin T1
hg19_v2_chr6_-_11044509_11044582	0.125274	AGCCCUU	ENST00000354666.3|ELOVL2|ENSG00000197977.3|ELOVL fatty acid elongase 2
hg19_v2_chr13_-_22033392_22033510	0.123834	AGCCCUU	ENST00000320220.9|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000415724.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000422251.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000382466.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000542645.1|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20 	ENST00000400590.3|ZDHHC20|ENSG00000180776.11|zinc finger, DHHC-type containing 20
hg19_v2_chr4_-_170533723_170533789	0.121742	AGCCCUU	ENST00000510533.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000439128.2|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000511633.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000512193.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1 	ENST00000507142.1|NEK1|ENSG00000137601.11|NIMA-related kinase 1
hg19_v2_chr13_+_98086445_98086493	0.119914	AGCCCUU	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr15_+_44719394_44719579	0.117794	AGCCCUU	ENST00000260327.4|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 	ENST00000396780.1|CTDSPL2|ENSG00000137770.9|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
hg19_v2_chr1_+_200708671_200708744	0.111324	AGCCCUU	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr17_+_47074758_47074787	0.111043	AGCCCUU	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr12_+_74931551_74931656	0.109212	AGCCCUU	ENST00000519948.2|ATXN7L3B|ENSG00000253719.2|ataxin 7-like 3B
hg19_v2_chr9_-_21335356_21335411	0.108619	AGCCCUU	ENST00000359039.4|KLHL9|ENSG00000198642.5|kelch-like family member 9
hg19_v2_chr2_-_27362263_27362283	0.107573	AGCCCUU	ENST00000432962.1|C2orf53|ENSG00000186143.6|chromosome 2 open reading frame 53 	ENST00000335524.3|C2orf53|ENSG00000186143.6|chromosome 2 open reading frame 53
hg19_v2_chr15_+_44580899_44580947	0.107171	AGCCCUU	ENST00000559222.1|CASC4|ENSG00000166734.14|cancer susceptibility candidate 4 	ENST00000299957.6|CASC4|ENSG00000166734.14|cancer susceptibility candidate 4
hg19_v2_chr21_-_32931290_32931341	0.102452	AGCCCUU	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr2_-_47168906_47168994	0.0989283	AGCCCUU	ENST00000444761.2|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2 	ENST00000409147.1|MCFD2|ENSG00000180398.7|multiple coagulation factor deficiency 2
hg19_v2_chr19_+_18747775_18747844	0.0941241	AGCCCUU	ENST00000300976.4|KLHL26|ENSG00000167487.7|kelch-like family member 26 	ENST00000595182.1|KLHL26|ENSG00000167487.7|kelch-like family member 26 	ENST00000599006.1|KLHL26|ENSG00000167487.7|kelch-like family member 26
hg19_v2_chr5_-_137368708_137368721	0.0933266	AGCCCUU	ENST00000033079.3|FAM13B|ENSG00000031003.6|family with sequence similarity 13, member B
hg19_v2_chr8_-_80680078_80680101	0.0903168	AGCCCUU	ENST00000337919.5|HEY1|ENSG00000164683.12|hes-related family bHLH transcription factor with YRPW motif 1 	ENST00000354724.3|HEY1|ENSG00000164683.12|hes-related family bHLH transcription factor with YRPW motif 1
hg19_v2_chr4_-_79860506_79860600	0.0888848	AGCCCUU	ENST00000295462.3|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000380645.4|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III 	ENST00000512733.1|PAQR3|ENSG00000163291.10|progestin and adipoQ receptor family member III
hg19_v2_chr1_-_205719295_205719404	0.0885468	AGCCCUU	ENST00000367142.4|NUCKS1|ENSG00000069275.12|nuclear casein kinase and cyclin-dependent kinase substrate 1
hg19_v2_chr16_+_66461175_66461274	0.0868644	AGCCCUU	ENST00000536005.2|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1 	ENST00000299694.8|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1 	ENST00000561796.1|BEAN1|ENSG00000166546.9|brain expressed, associated with NEDD4, 1
hg19_v2_chr2_-_86564776_86564813	0.0864154	AGCCCUU	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr14_+_23775971_23776000	0.0753857	AGCCCUU	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr11_-_47198380_47198448	0.0745937	AGCCCUU	ENST00000419701.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000526342.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000528444.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000530596.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525398.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000319543.6|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000426335.2|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000527927.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2 	ENST00000525314.1|ARFGAP2|ENSG00000149182.10|ADP-ribosylation factor GTPase activating protein 2
hg19_v2_chr2_+_178257372_178257523	0.0740448	AGCCCUU	ENST00000264167.4|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase 	ENST00000409888.1|AGPS|ENSG00000018510.8|alkylglycerone phosphate synthase
hg19_v2_chr16_-_30134524_30134630	0.0526194	AGCCCUU	ENST00000395202.1|MAPK3|ENSG00000102882.7|mitogen-activated protein kinase 3 	ENST00000395199.3|MAPK3|ENSG00000102882.7|mitogen-activated protein kinase 3 	ENST00000263025.4|MAPK3|ENSG00000102882.7|mitogen-activated protein kinase 3 	ENST00000322266.5|MAPK3|ENSG00000102882.7|mitogen-activated protein kinase 3 	ENST00000403394.1|MAPK3|ENSG00000102882.7|mitogen-activated protein kinase 3
hg19_v2_chr15_-_78423886_78423907	0.0525687	AGCCCUU	ENST00000258930.3|CIB2|ENSG00000136425.8|calcium and integrin binding family member 2
hg19_v2_chr20_+_30555805_30555984	0.0523231	AGCCCUU	ENST00000562532.2|XKR7|ENSG00000260903.2|XK, Kell blood group complex subunit-related family, member 7
hg19_v2_chr17_+_5031687_5031687	0.051458	AGCCCUU	ENST00000250066.6|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene) 	ENST00000304328.5|USP6|ENSG00000129204.12|ubiquitin specific peptidase 6 (Tre-2 oncogene)
hg19_v2_chr10_+_121410882_121410902	0.0477949	AGCCCUU	ENST00000369085.3|BAG3|ENSG00000151929.5|BCL2-associated athanogene 3
hg19_v2_chr10_+_75504105_75504190	0.0476536	AGCCCUU	ENST00000535742.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000546025.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000345254.4|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000540668.1|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000339365.2|SEC24C|ENSG00000176986.10|SEC24 family member C 	ENST00000411652.2|SEC24C|ENSG00000176986.10|SEC24 family member C
hg19_v2_chrX_-_53449593_53449677	0.0450158	AGCCCUU	ENST00000375340.6|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A 	ENST00000322213.4|SMC1A|ENSG00000072501.13|structural maintenance of chromosomes 1A
hg19_v2_chr5_-_77844974_77844994	0.0371227	AGCCCUU	ENST00000515007.2|LHFPL2|ENSG00000145685.9|lipoma HMGIC fusion partner-like 2
hg19_v2_chr6_-_105850937_105850983	0.0326093	AGCCCUU	ENST00000369110.3|PREP|ENSG00000085377.9|prolyl endopeptidase
hg19_v2_chr15_-_68724490_68724516	0.0299014	AGCCCUU	ENST00000315757.7|ITGA11|ENSG00000137809.12|integrin, alpha 11 	ENST00000423218.2|ITGA11|ENSG00000137809.12|integrin, alpha 11
hg19_v2_chr10_+_114206956_114207040	0.0251707	AGCCCUU	ENST00000432306.1|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A 	ENST00000393077.2|VTI1A|ENSG00000151532.9|vesicle transport through interaction with t-SNAREs 1A
hg19_v2_chr14_+_92588281_92588336	0.024228	AGCCCUU	ENST00000298875.4|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa 	ENST00000553427.1|CPSF2|ENSG00000165934.8|cleavage and polyadenylation specific factor 2, 100kDa
hg19_v2_chr5_-_39074479_39074515	0.022612	AGCCCUU	ENST00000514735.1|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000296782.5|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2 	ENST00000357387.3|RICTOR|ENSG00000164327.8|RPTOR independent companion of MTOR, complex 2
hg19_v2_chr6_+_56954867_56954882	0.0194212	AGCCCUU	ENST00000370708.4|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370702.1|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr16_-_15736953_15737025	0.017732	AGCCCUU	ENST00000548025.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000551742.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000602337.1|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000344181.3|KIAA0430|ENSG00000166783.15|KIAA0430 	ENST00000396368.3|KIAA0430|ENSG00000166783.15|KIAA0430
hg19_v2_chr18_+_46065393_46065444	0.0164147	AGCCCUU	ENST00000256413.3|CTIF|ENSG00000134030.9|CBP80/20-dependent translation initiation factor
hg19_v2_chr1_+_173684047_173684136	0.01343	AGCCCUU	ENST00000546011.1|KLHL20|ENSG00000076321.6|kelch-like family member 20 	ENST00000209884.4|KLHL20|ENSG00000076321.6|kelch-like family member 20
hg19_v2_chr17_+_55333876_55333939	0.013243	AGCCCUU	ENST00000284073.2|MSI2|ENSG00000153944.6|musashi RNA-binding protein 2
hg19_v2_chr22_-_26879734_26879784	0.0115336	AGCCCUU	ENST00000422379.2|HPS4|ENSG00000100099.16|Hermansky-Pudlak syndrome 4 	ENST00000336873.5|HPS4|ENSG00000100099.16|Hermansky-Pudlak syndrome 4 	ENST00000398145.2|HPS4|ENSG00000100099.16|Hermansky-Pudlak syndrome 4
hg19_v2_chr7_+_77469439_77469497	0.00879353	AGCCCUU	ENST00000450574.1|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000416283.2|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2 	ENST00000248550.7|PHTF2|ENSG00000006576.12|putative homeodomain transcription factor 2
hg19_v2_chr12_+_110338063_110338105	0.0070488	AGCCCUU	ENST00000405876.4|TCHP|ENSG00000139437.13|trichoplein, keratin filament binding
hg19_v2_chr16_-_17564738_17564834	0.0070081	AGCCCUU	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr3_-_125094093_125094198	0.00423396	AGCCCUU	ENST00000484491.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000492394.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000471196.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000468369.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000544464.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000485866.1|ZNF148|ENSG00000163848.14|zinc finger protein 148 	ENST00000360647.4|ZNF148|ENSG00000163848.14|zinc finger protein 148
hg19_v2_chr12_-_48499591_48499663	0.00159178	AGCCCUU	ENST00000551330.1|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000004980.5|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000339976.6|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1 	ENST00000448372.1|SENP1|ENSG00000079387.9|SUMO1/sentrin specific peptidase 1
hg19_v2_chr12_-_102224704_102224750	0.000870445	AGCCCUU	ENST00000299314.7|GNPTAB|ENSG00000111670.10|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
