hg19_v2_chr17_-_41738931_41739040	1.04018	BRCA1	ENST00000329168.3|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000549132.1|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr17_-_41739283_41739322	1.01011	BRCA1	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr14_-_60097524_60097538	1.00148	BRCA1	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr14_-_60097297_60097403	0.970269	BRCA1	ENST00000395090.1|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr2_+_196522032_196522173	0.81975	BRCA1	ENST00000418005.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr6_+_12717892_12717903	0.759681	BRCA1	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr6_-_110797799_110797844	0.720235	BRCA1	ENST00000456137.2|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16 	ENST00000368919.3|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16 	ENST00000439654.1|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16
hg19_v2_chr6_+_123100620_123100763	0.711975	BRCA1	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr19_-_48059113_48059113	0.661799	BRCA1	ENST00000391901.3|ZNF541|ENSG00000118156.8|zinc finger protein 541 	ENST00000314121.4|ZNF541|ENSG00000118156.8|zinc finger protein 541 	ENST00000448976.1|ZNF541|ENSG00000118156.8|zinc finger protein 541
hg19_v2_chr2_-_158182322_158182358	0.655088	BRCA1	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr2_+_196521458_196521491	0.648226	BRCA1	ENST00000409086.3|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr11_+_124789146_124789146	0.619758	BRCA1	ENST00000408930.5|HEPN1|ENSG00000221932.5|hepatocellular carcinoma, down-regulated 1
hg19_v2_chr19_+_45971246_45971265	0.59448	BRCA1	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr2_-_158182410_158182446	0.581181	BRCA1	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr2_+_196521903_196521986	0.552068	BRCA1	ENST00000541054.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr4_+_619347_619382	0.53666	BRCA1	ENST00000255622.6|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr17_+_74372662_74372742	0.513876	BRCA1	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr4_+_619386_619407	0.512345	BRCA1	ENST00000496514.1|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr12_+_122880045_122880153	0.511146	BRCA1	ENST00000539034.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1	ENST00000535976.1|RP11-450K4.1|ENSG00000257097.1|RP11-450K4.1
hg19_v2_chr8_-_116681221_116681236	0.475905	BRCA1	ENST00000395715.3|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr6_-_110797591_110797602	0.467058	BRCA1	ENST00000424139.1|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16 	ENST00000437378.1|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16
hg19_v2_chr2_+_196521845_196521869	0.464177	BRCA1	ENST00000359634.5|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10 	ENST00000412905.1|SLC39A10|ENSG00000196950.9|solute carrier family 39 (zinc transporter), member 10
hg19_v2_chr18_-_49557_49557	0.442446	BRCA1	ENST00000308911.6|RP11-683L23.1|ENSG00000173213.7|Tubulin beta-8 chain-like protein LOC260334
hg19_v2_chr6_-_110797642_110797655	0.42195	BRCA1	ENST00000434949.1|SLC22A16|ENSG00000004809.9|solute carrier family 22 (organic cation/carnitine transporter), member 16
hg19_v2_chr10_-_95209_95241	0.396751	BRCA1	ENST00000332708.5|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII 	ENST00000309812.4|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr10_+_122610853_122610999	0.388124	BRCA1	ENST00000604585.1|WDR11|ENSG00000120008.11|WD repeat domain 11
hg19_v2_chr8_-_16859690_16859861	0.382843	BRCA1	ENST00000180166.5|FGF20|ENSG00000078579.8|fibroblast growth factor 20
hg19_v2_chr9_-_43133544_43133544	0.378526	BRCA1	ENST00000254835.2|ANKRD20A3|ENSG00000132498.7|ankyrin repeat domain 20 family, member A3
hg19_v2_chr10_+_104404644_104404726	0.354367	BRCA1	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr2_-_158182105_158182171	0.349359	BRCA1	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr14_+_22631122_22631139	0.342473	BRCA1	ENST00000390458.3|TRAV29DV5|ENSG00000211810.3|T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene)
hg19_v2_chr7_-_23510086_23510118	0.341203	BRCA1	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr12_-_117319236_117319252	0.339257	BRCA1	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr8_-_116681123_116681143	0.337158	BRCA1	ENST00000519674.1|TRPS1|ENSG00000104447.7|trichorhinophalangeal syndrome I
hg19_v2_chr14_+_32030582_32030661	0.336992	BRCA1	ENST00000550649.1|NUBPL|ENSG00000151413.12|nucleotide binding protein-like 	ENST00000281081.7|NUBPL|ENSG00000151413.12|nucleotide binding protein-like
hg19_v2_chr13_+_103046954_103046990	0.335679	BRCA1	ENST00000606448.1|FGF14-AS2|ENSG00000272143.1|FGF14 antisense RNA 2
hg19_v2_chr12_-_24715307_24715319	0.330156	BRCA1	ENST00000538905.1|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1
hg19_v2_chr10_-_95504_95504	0.329861	BRCA1	ENST00000447903.2|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr13_-_99910673_99910682	0.321209	BRCA1	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr4_-_48782259_48782335	0.320371	BRCA1	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr5_-_142023766_142023810	0.320048	BRCA1	ENST00000394496.2|FGF1|ENSG00000113578.13|fibroblast growth factor 1 (acidic)
hg19_v2_chr20_+_9049682_9049710	0.303882	BRCA1	ENST00000334005.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4 	ENST00000378473.3|PLCB4|ENSG00000101333.12|phospholipase C, beta 4
hg19_v2_chr3_+_184056614_184056641	0.296921	BRCA1	ENST00000453072.1|FAM131A|ENSG00000175182.9|family with sequence similarity 131, member A
hg19_v2_chr17_-_8702667_8702685	0.296201	BRCA1	ENST00000329805.4|MFSD6L|ENSG00000185156.4|major facilitator superfamily domain containing 6-like
hg19_v2_chrX_-_46187069_46187090	0.290071	BRCA1	ENST00000446884.1|RP1-30G7.2|ENSG00000236751.1|RP1-30G7.2
hg19_v2_chr12_-_95510743_95510753	0.288048	BRCA1	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr6_+_16129308_16129402	0.281325	BRCA1	ENST00000356840.3|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein 	ENST00000349606.4|MYLIP|ENSG00000007944.10|myosin regulatory light chain interacting protein
hg19_v2_chr9_-_124976154_124976177	0.272946	BRCA1	ENST00000482062.1|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr12_-_12491608_12491640	0.266091	BRCA1	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr19_-_6057282_6057313	0.252203	BRCA1	ENST00000592281.1|RFX2|ENSG00000087903.8|regulatory factor X, 2 (influences HLA class II expression)
hg19_v2_chr11_+_47291645_47291727	0.25101	BRCA1	ENST00000395336.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402192.2|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr11_-_71823266_71823325	0.24204	BRCA1	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr19_-_40324767_40324841	0.241538	BRCA1	ENST00000601972.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000430012.2|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000323039.5|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000348817.3|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr12_-_67072714_67072925	0.237514	BRCA1	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr3_-_176914191_176914235	0.230108	BRCA1	ENST00000437738.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000424913.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000443315.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr1_+_160147176_160147201	0.22903	BRCA1	ENST00000470705.1|ATP1A4|ENSG00000132681.12|ATPase, Na+/K+ transporting, alpha 4 polypeptide
hg19_v2_chr5_+_140079919_140080042	0.228209	BRCA1	ENST00000274712.3|ZMAT2|ENSG00000146007.6|zinc finger, matrin-type 2
hg19_v2_chr2_-_179914760_179914884	0.223306	BRCA1	ENST00000420890.2|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000409284.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000443758.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000446116.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141
hg19_v2_chr2_-_134326009_134326053	0.212343	BRCA1	ENST00000409261.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5 	ENST00000409213.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5
hg19_v2_chr2_-_25194476_25194500	0.212091	BRCA1	ENST00000534855.1|DNAJC27|ENSG00000115137.7|DnaJ (Hsp40) homolog, subfamily C, member 27
hg19_v2_chr7_-_78400598_78400654	0.211	BRCA1	ENST00000536571.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chrX_+_49644470_49644470	0.21032	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr6_+_78400375_78400375	0.20727	BRCA1	ENST00000602452.2|MEI4|ENSG00000269964.2|meiosis-specific 4 homolog (S. cerevisiae)
hg19_v2_chr20_-_34025999_34026045	0.194827	BRCA1	ENST00000374369.3|GDF5|ENSG00000125965.4|growth differentiation factor 5
hg19_v2_chr10_+_122610687_122610809	0.192668	BRCA1	ENST00000263461.6|WDR11|ENSG00000120008.11|WD repeat domain 11
hg19_v2_chr12_+_510742_510782	0.187314	BRCA1	ENST00000239830.4|CCDC77|ENSG00000120647.5|coiled-coil domain containing 77
hg19_v2_chr5_-_68665084_68665143	0.186637	BRCA1	ENST00000509462.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr1_-_173020056_173020103	0.180062	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr13_-_99910620_99910660	0.17918	BRCA1	ENST00000416594.1|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr12_+_510795_510835	0.1744	BRCA1	ENST00000412006.2|CCDC77|ENSG00000120647.5|coiled-coil domain containing 77
hg19_v2_chr12_-_49449107_49449107	0.172846	BRCA1	ENST00000301067.7|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr11_+_47291193_47291267	0.172351	BRCA1	ENST00000428807.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000402799.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000406482.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000349238.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000311027.5|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000407859.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000395344.3|MADD|ENSG00000110514.14|MAP-kinase activating death domain 	ENST00000444117.1|MADD|ENSG00000110514.14|MAP-kinase activating death domain
hg19_v2_chr14_-_75179774_75179818	0.171627	BRCA1	ENST00000555249.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000556202.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000338772.5|AC007956.1|ENSG00000214670.3|Full-length cDNA 5-PRIME end of clone CS0CAP004YO05 of Thymus of Homo sapiens (human); Uncharacterized protein  	ENST00000356357.4|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1
hg19_v2_chrX_+_10124977_10125036	0.16867	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr7_-_78400364_78400403	0.167653	BRCA1	ENST00000535697.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr5_+_140186647_140186773	0.166284	BRCA1	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr1_-_115301235_115301297	0.165791	BRCA1	ENST00000525878.1|CSDE1|ENSG00000009307.11|cold shock domain containing E1, RNA-binding
hg19_v2_chr1_-_170043709_170043874	0.160474	BRCA1	ENST00000367767.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000361580.2|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3 	ENST00000538366.1|KIFAP3|ENSG00000075945.8|kinesin-associated protein 3
hg19_v2_chr17_-_60142609_60142657	0.155171	BRCA1	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr1_+_161736072_161736093	0.154243	BRCA1	ENST00000367942.3|ATF6|ENSG00000118217.5|activating transcription factor 6
hg19_v2_chr13_-_31038370_31038509	0.150334	BRCA1	ENST00000399489.1|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000339872.4|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr13_-_50018241_50018277	0.14326	BRCA1	ENST00000409308.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr7_+_44646177_44646201	0.141488	BRCA1	ENST00000443864.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000447398.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000449767.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000419661.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr5_+_145583107_145583149	0.140654	BRCA1	ENST00000506502.1|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr10_-_75385711_75385774	0.13275	BRCA1	ENST00000433394.1|USP54|ENSG00000166348.13|ubiquitin specific peptidase 54
hg19_v2_chr11_-_13484713_13484850	0.131791	BRCA1	ENST00000526841.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000529708.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000278174.5|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10 	ENST00000528120.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr19_+_45394477_45394546	0.131752	BRCA1	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr8_+_37553261_37553282	0.131027	BRCA1	ENST00000331569.4|ZNF703|ENSG00000183779.5|zinc finger protein 703
hg19_v2_chr9_-_86593238_86593367	0.124523	BRCA1	ENST00000351839.3|HNRNPK|ENSG00000165119.14|heterogeneous nuclear ribonucleoprotein K
hg19_v2_chr3_+_187461442_187461474	0.124172	BRCA1	ENST00000450760.1|RP11-211G3.2|ENSG00000223401.1|RP11-211G3.2
hg19_v2_chr7_+_44646162_44646176	0.117928	BRCA1	ENST00000439616.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr20_-_48530230_48530276	0.106217	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr6_+_33172407_33172419	0.105758	BRCA1	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr12_-_122879969_122879982	0.103904	BRCA1	ENST00000540304.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr3_+_185303962_185304021	0.103832	BRCA1	ENST00000296257.5|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr13_-_50018140_50018221	0.100075	BRCA1	ENST00000410043.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000347776.5|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr1_+_10271674_10271674	0.0906296	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr19_-_37663332_37663344	0.0892773	BRCA1	ENST00000392157.2|ZNF585A|ENSG00000196967.6|zinc finger protein 585A
hg19_v2_chr6_-_137314371_137314394	0.0878565	BRCA1	ENST00000432330.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5	ENST00000418699.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5
hg19_v2_chr15_+_67430339_67430366	0.0871348	BRCA1	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr19_-_37663572_37663643	0.0834374	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000292841.5|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000355533.2|ZNF585A|ENSG00000196967.6|zinc finger protein 585A 	ENST00000356958.4|ZNF585A|ENSG00000196967.6|zinc finger protein 585A
hg19_v2_chr10_+_92631709_92631746	0.0833271	BRCA1	ENST00000413330.1|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit 	ENST00000277882.3|RPP30|ENSG00000148688.9|ribonuclease P/MRP 30kDa subunit
hg19_v2_chr3_-_127455200_127455223	0.0815432	BRCA1	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr7_+_99717230_99717321	0.0740907	BRCA1	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr15_-_88799948_88799978	0.07377	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr8_+_97773457_97773475	0.0667984	BRCA1	ENST00000521142.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr13_+_27825706_27825741	0.0649543	BRCA1	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr2_+_108994466_108994485	0.0546331	BRCA1	ENST00000272452.2|SULT1C4|ENSG00000198075.5|sulfotransferase family, cytosolic, 1C, member 4
hg19_v2_chrX_+_150565038_150565070	0.0535294	BRCA1	ENST00000370361.1|VMA21|ENSG00000160131.9|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
hg19_v2_chr5_-_124082279_124082320	0.0497456	BRCA1	ENST00000513986.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr13_+_30002846_30002862	0.0480529	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr10_-_61900762_61900779	0.0398153	BRCA1	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_-_152118276_152118351	0.0394053	BRCA1	ENST00000409092.1|RBM43|ENSG00000184898.6|RNA binding motif protein 43
hg19_v2_chr18_-_23671139_23671190	0.0393428	BRCA1	ENST00000579061.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000542420.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr5_+_145583156_145583180	0.0368147	BRCA1	ENST00000265271.5|RBM27|ENSG00000091009.6|RNA binding motif protein 27
hg19_v2_chr12_+_96196875_96196875	0.0347825	BRCA1	ENST00000553095.1|RP11-536G4.1|ENSG00000258292.1|Uncharacterized protein
hg19_v2_chr19_+_46000479_46000502	0.0331766	BRCA1	ENST00000456399.2|PPM1N|ENSG00000213889.6|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
hg19_v2_chr5_-_68664989_68665060	0.0263052	BRCA1	ENST00000508954.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr5_-_68665296_68665381	0.0233533	BRCA1	ENST00000512152.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000503245.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000512561.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa 	ENST00000380822.4|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr6_+_42981922_42982047	0.0181842	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr10_+_28822636_28822692	0.0179508	BRCA1	ENST00000442148.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil 	ENST00000448193.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil
hg19_v2_chrX_-_70288234_70288291	0.0174787	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr13_+_30002741_30002776	0.017428	BRCA1	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr5_-_68665469_68665490	0.0169449	BRCA1	ENST00000217893.5|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr11_-_110583912_110583912	0.0114943	BRCA1	ENST00000533353.1|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20 	ENST00000527598.1|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr7_-_99716940_99716943	0.0110482	BRCA1	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chrX_-_77150911_77150960	0.00525047	BRCA1	ENST00000373336.3|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr12_-_49418407_49418407	0.0051708	BRCA1	ENST00000526209.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr8_+_97773202_97773233	0.00290402	BRCA1	ENST00000519484.1|CPQ|ENSG00000104324.11|carboxypeptidase Q
hg19_v2_chr7_-_6010263_6010314	0.00224184	BRCA1	ENST00000455618.2|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000405415.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000404406.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas) 	ENST00000542644.1|RSPH10B|ENSG00000155026.12|radial spoke head 10 homolog B (Chlamydomonas)
hg19_v2_chr1_-_217250231_217250349	0.00105922	BRCA1	ENST00000493748.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000463665.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
