hg19_v2_chr12_+_57943781_57943869	1.18806	CAGUCCA	ENST00000455537.2|KIF5A|ENSG00000155980.7|kinesin family member 5A 	ENST00000286452.5|KIF5A|ENSG00000155980.7|kinesin family member 5A
hg19_v2_chr1_+_201979645_201979721	1.12747	CAGUCCA	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr16_-_51185149_51185160	0.622411	CAGUCCA	ENST00000566102.1|SALL1|ENSG00000103449.7|spalt-like transcription factor 1 	ENST00000541611.1|SALL1|ENSG00000103449.7|spalt-like transcription factor 1
hg19_v2_chr6_+_123317116_123317260	0.587238	CAGUCCA	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr1_-_41131326_41131400	0.513857	CAGUCCA	ENST00000372684.3|RIMS3|ENSG00000117016.5|regulating synaptic membrane exocytosis 3
hg19_v2_chr2_-_50574856_50574892	0.505487	CAGUCCA	ENST00000342183.5|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr9_+_103204553_103204560	0.48835	CAGUCCA	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough 	ENST00000334943.6|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr18_-_70210764_70210794	0.465564	CAGUCCA	ENST00000585159.1|CBLN2|ENSG00000141668.5|cerebellin 2 precursor 	ENST00000584764.1|CBLN2|ENSG00000141668.5|cerebellin 2 precursor
hg19_v2_chr16_-_31147020_31147083	0.461109	CAGUCCA	ENST00000568261.1|PRSS8|ENSG00000052344.11|protease, serine, 8 	ENST00000567797.1|PRSS8|ENSG00000052344.11|protease, serine, 8 	ENST00000317508.6|PRSS8|ENSG00000052344.11|protease, serine, 8
hg19_v2_chrX_+_100474711_100474758	0.407396	CAGUCCA	ENST00000402866.1|DRP2|ENSG00000102385.8|dystrophin related protein 2
hg19_v2_chr1_-_20812690_20812763	0.406485	CAGUCCA	ENST00000375078.3|CAMK2N1|ENSG00000162545.5|calcium/calmodulin-dependent protein kinase II inhibitor 1
hg19_v2_chr3_-_132004251_132004258	0.402467	CAGUCCA	ENST00000512055.1|CPNE4|ENSG00000196353.7|copine IV
hg19_v2_chr11_-_118047376_118047388	0.392571	CAGUCCA	ENST00000278947.5|SCN2B|ENSG00000149575.5|sodium channel, voltage-gated, type II, beta subunit
hg19_v2_chr12_-_71148413_71148515	0.367631	CAGUCCA	ENST00000440835.2|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R 	ENST00000549308.1|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R 	ENST00000550661.1|PTPRR|ENSG00000153233.8|protein tyrosine phosphatase, receptor type, R
hg19_v2_chr11_-_134281812_134281828	0.356652	CAGUCCA	ENST00000392580.1|B3GAT1|ENSG00000109956.8|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 	ENST00000312527.4|B3GAT1|ENSG00000109956.8|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
hg19_v2_chr9_+_103235365_103235419	0.35583	CAGUCCA	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr7_+_73242069_73242082	0.338816	CAGUCCA	ENST00000435050.1|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr11_-_45307817_45307898	0.311781	CAGUCCA	ENST00000020926.3|SYT13|ENSG00000019505.3|synaptotagmin XIII
hg19_v2_chr6_+_118228657_118228715	0.307239	CAGUCCA	ENST00000360388.4|SLC35F1|ENSG00000196376.6|solute carrier family 35, member F1
hg19_v2_chr2_+_105471969_105471969	0.292068	CAGUCCA	ENST00000361360.2|POU3F3|ENSG00000198914.2|POU class 3 homeobox 3
hg19_v2_chr11_-_35440796_35440916	0.290845	CAGUCCA	ENST00000278379.3|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chrX_-_152939252_152939300	0.276098	CAGUCCA	ENST00000340888.3|PNCK|ENSG00000130822.11|pregnancy up-regulated nonubiquitous CaM kinase
hg19_v2_chr1_+_40420802_40420836	0.268463	CAGUCCA	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr13_+_88324870_88324870	0.263909	CAGUCCA	ENST00000325089.6|SLITRK5|ENSG00000165300.6|SLIT and NTRK-like family, member 5
hg19_v2_chrX_+_69664706_69664819	0.263245	CAGUCCA	ENST00000194900.4|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila) 	ENST00000374360.3|DLG3|ENSG00000082458.7|discs, large homolog 3 (Drosophila)
hg19_v2_chr13_+_25946201_25946215	0.256236	CAGUCCA	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr17_-_41977964_41978013	0.245555	CAGUCCA	ENST00000377184.3|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
hg19_v2_chr6_+_52226897_52226969	0.231893	CAGUCCA	ENST00000442253.2|PAQR8|ENSG00000170915.8|progestin and adipoQ receptor family member VIII
hg19_v2_chrX_+_28605516_28605608	0.224108	CAGUCCA	ENST00000378993.1|IL1RAPL1|ENSG00000169306.5|interleukin 1 receptor accessory protein-like 1
hg19_v2_chr1_+_107683644_107683673	0.215774	CAGUCCA	ENST00000370067.1|NTNG1|ENSG00000162631.14|netrin G1
hg19_v2_chr11_-_129062093_129062184	0.215601	CAGUCCA	ENST00000310343.9|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chr8_-_91997427_91997504	0.20059	CAGUCCA	ENST00000517562.2|RP11-122A3.2|ENSG00000253250.2|chromosome 8 open reading frame 88
hg19_v2_chr1_-_146644122_146644176	0.19767	CAGUCCA	ENST00000254101.3|PRKAB2|ENSG00000131791.6|protein kinase, AMP-activated, beta 2 non-catalytic subunit
hg19_v2_chr2_+_153191706_153191751	0.188916	CAGUCCA	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr15_+_45315302_45315440	0.180237	CAGUCCA	ENST00000267814.9|SORD|ENSG00000140263.9|sorbitol dehydrogenase
hg19_v2_chr22_-_38851205_38851205	0.177844	CAGUCCA	ENST00000303592.3|KCNJ4|ENSG00000168135.4|potassium inwardly-rectifying channel, subfamily J, member 4
hg19_v2_chr4_+_184826418_184826522	0.172171	CAGUCCA	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr7_-_14029515_14029642	0.172041	CAGUCCA	ENST00000430479.1|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000405218.2|ETV1|ENSG00000006468.9|ets variant 1 	ENST00000343495.5|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr9_-_101471479_101471522	0.168346	CAGUCCA	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chrX_-_25034065_25034088	0.162218	CAGUCCA	ENST00000379044.4|ARX|ENSG00000004848.6|aristaless related homeobox
hg19_v2_chr6_-_10415470_10415508	0.1513	CAGUCCA	ENST00000379604.2|TFAP2A|ENSG00000137203.6|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 	ENST00000379613.3|TFAP2A|ENSG00000137203.6|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)
hg19_v2_chr15_+_41851211_41851232	0.150312	CAGUCCA	ENST00000263798.3|TYRO3|ENSG00000092445.7|TYRO3 protein tyrosine kinase
hg19_v2_chr1_+_155290677_155290753	0.144778	CAGUCCA	ENST00000368354.3|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1 	ENST00000368352.5|RUSC1|ENSG00000160753.11|RUN and SH3 domain containing 1
hg19_v2_chr11_-_31839488_31839515	0.143611	CAGUCCA	ENST00000419022.1|PAX6|ENSG00000007372.16|paired box 6 	ENST00000379132.3|PAX6|ENSG00000007372.16|paired box 6 	ENST00000379129.2|PAX6|ENSG00000007372.16|paired box 6
hg19_v2_chr15_+_49170083_49170111	0.143266	CAGUCCA	ENST00000530028.2|EID1|ENSG00000255302.3|EP300 interacting inhibitor of differentiation 1
hg19_v2_chr20_+_6748311_6748352	0.141783	CAGUCCA	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr6_+_76458909_76458934	0.141189	CAGUCCA	ENST00000369981.3|MYO6|ENSG00000196586.9|myosin VI 	ENST00000369985.4|MYO6|ENSG00000196586.9|myosin VI
hg19_v2_chr6_-_111136513_111136525	0.13833	CAGUCCA	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr9_+_126773880_126773895	0.137607	CAGUCCA	ENST00000373615.4|LHX2|ENSG00000106689.6|LIM homeobox 2
hg19_v2_chr14_-_100070363_100070467	0.13621	CAGUCCA	ENST00000380243.4|CCDC85C|ENSG00000205476.4|coiled-coil domain containing 85C
hg19_v2_chr11_-_79151695_79151710	0.133118	CAGUCCA	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr6_-_30524951_30524957	0.132349	CAGUCCA	ENST00000376621.3|GNL1|ENSG00000204590.8|guanine nucleotide binding protein-like 1
hg19_v2_chr17_-_7120525_7120666	0.131894	CAGUCCA	ENST00000447163.1|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila) 	ENST00000399506.2|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila) 	ENST00000302955.6|DLG4|ENSG00000132535.14|discs, large homolog 4 (Drosophila)
hg19_v2_chr20_-_656823_656902	0.123233	CAGUCCA	ENST00000246104.6|SCRT2|ENSG00000215397.3|scratch family zinc finger 2
hg19_v2_chr19_-_14629224_14629262	0.121158	CAGUCCA	ENST00000254322.2|DNAJB1|ENSG00000132002.3|DnaJ (Hsp40) homolog, subfamily B, member 1
hg19_v2_chr7_+_88388628_88388682	0.121058	CAGUCCA	ENST00000333190.4|ZNF804B|ENSG00000182348.5|zinc finger protein 804B
hg19_v2_chr3_+_196295482_196295559	0.119343	CAGUCCA	ENST00000440469.1|FBXO45|ENSG00000174013.7|F-box protein 45 	ENST00000311630.6|FBXO45|ENSG00000174013.7|F-box protein 45
hg19_v2_chrX_-_110038990_110038997	0.115829	CAGUCCA	ENST00000372045.1|CHRDL1|ENSG00000101938.10|chordin-like 1 	ENST00000394797.4|CHRDL1|ENSG00000101938.10|chordin-like 1
hg19_v2_chr19_+_49622646_49622699	0.111352	CAGUCCA	ENST00000334186.4|PPFIA3|ENSG00000177380.9|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
hg19_v2_chr17_-_73851285_73851501	0.108854	CAGUCCA	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr14_+_23775971_23776000	0.108413	CAGUCCA	ENST00000250405.5|BCL2L2|ENSG00000129473.5|BCL2-like 2
hg19_v2_chr3_+_25469724_25469773	0.0997876	CAGUCCA	ENST00000437042.2|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr14_+_58666824_58666902	0.099053	CAGUCCA	ENST00000254286.4|ACTR10|ENSG00000131966.9|actin-related protein 10 homolog (S. cerevisiae)
hg19_v2_chr8_-_30670384_30670394	0.0985502	CAGUCCA	ENST00000221138.4|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme 	ENST00000518243.1|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme
hg19_v2_chrX_-_48824793_48824793	0.0971201	CAGUCCA	ENST00000376477.1|KCND1|ENSG00000102057.5|potassium voltage-gated channel, Shal-related subfamily, member 1
hg19_v2_chr15_+_62853562_62853614	0.0940917	CAGUCCA	ENST00000561311.1|TLN2|ENSG00000171914.10|talin 2
hg19_v2_chr14_+_65171099_65171210	0.0916662	CAGUCCA	ENST00000247226.7|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr1_-_33338076_33338105	0.0906961	CAGUCCA	ENST00000496770.1|FNDC5|ENSG00000160097.11|fibronectin type III domain containing 5
hg19_v2_chr4_-_71705590_71705662	0.0888701	CAGUCCA	ENST00000254799.6|GRSF1|ENSG00000132463.9|G-rich RNA sequence binding factor 1
hg19_v2_chr4_+_184020398_184020463	0.0883368	CAGUCCA	ENST00000403733.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2 	ENST00000378925.3|WWC2|ENSG00000151718.11|WW and C2 domain containing 2
hg19_v2_chr17_-_16395455_16395467	0.0879227	CAGUCCA	ENST00000409083.3|FAM211A|ENSG00000181350.7|family with sequence similarity 211, member A
hg19_v2_chr3_-_37034702_37034795	0.0844686	CAGUCCA	ENST00000322716.5|EPM2AIP1|ENSG00000178567.5|EPM2A (laforin) interacting protein 1
hg19_v2_chr19_+_38879061_38879061	0.0838266	CAGUCCA	ENST00000587013.1|SPRED3|ENSG00000188766.8|sprouty-related, EVH1 domain containing 3
hg19_v2_chr3_-_11762202_11762226	0.0821056	CAGUCCA	ENST00000445411.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000404339.1|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila) 	ENST00000273038.3|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr6_-_42419649_42419789	0.0735658	CAGUCCA	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr2_-_73298802_73298965	0.0733532	CAGUCCA	ENST00000411783.1|SFXN5|ENSG00000144040.8|sideroflexin 5 	ENST00000410065.1|SFXN5|ENSG00000144040.8|sideroflexin 5 	ENST00000442582.1|SFXN5|ENSG00000144040.8|sideroflexin 5 	ENST00000272433.2|SFXN5|ENSG00000144040.8|sideroflexin 5
hg19_v2_chr1_-_37499726_37499850	0.0706038	CAGUCCA	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chr19_+_8274204_8274265	0.070318	CAGUCCA	ENST00000561053.1|CERS4|ENSG00000090661.7|ceramide synthase 4 	ENST00000251363.5|CERS4|ENSG00000090661.7|ceramide synthase 4 	ENST00000559450.1|CERS4|ENSG00000090661.7|ceramide synthase 4 	ENST00000559336.1|CERS4|ENSG00000090661.7|ceramide synthase 4
hg19_v2_chr19_+_48281842_48281853	0.0689052	CAGUCCA	ENST00000509570.2|SEPW1|ENSG00000178980.10|selenoprotein W, 1
hg19_v2_chr12_+_120933904_120933923	0.0686777	CAGUCCA	ENST00000550178.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000550845.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549989.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000552870.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr5_+_92919043_92919082	0.0664613	CAGUCCA	ENST00000327111.3|NR2F1|ENSG00000175745.7|nuclear receptor subfamily 2, group F, member 1
hg19_v2_chr1_-_150979333_150979384	0.0646432	CAGUCCA	ENST00000312210.5|FAM63A|ENSG00000143409.11|family with sequence similarity 63, member A
hg19_v2_chr15_+_49715293_49715448	0.0624905	CAGUCCA	ENST00000267843.4|FGF7|ENSG00000140285.5|fibroblast growth factor 7 	ENST00000560270.1|FGF7|ENSG00000140285.5|fibroblast growth factor 7
hg19_v2_chr9_+_133710453_133710453	0.060225	CAGUCCA	ENST00000318560.5|ABL1|ENSG00000097007.13|c-abl oncogene 1, non-receptor tyrosine kinase
hg19_v2_chr8_-_93115445_93115462	0.0599659	CAGUCCA	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr11_-_118966167_118966182	0.0593727	CAGUCCA	ENST00000530167.1|H2AFX|ENSG00000188486.3|H2A histone family, member X
hg19_v2_chr2_+_48010221_48010307	0.058752	CAGUCCA	ENST00000234420.5|MSH6|ENSG00000116062.10|mutS homolog 6
hg19_v2_chr1_-_40367530_40367597	0.0580719	CAGUCCA	ENST00000372816.2|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 	ENST00000372815.1|MYCL|ENSG00000116990.9|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog
hg19_v2_chr3_+_169684553_169684616	0.0579228	CAGUCCA	ENST00000337002.4|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae) 	ENST00000480708.1|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae)
hg19_v2_chr1_-_149982624_149982719	0.0570167	CAGUCCA	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
hg19_v2_chr5_+_60628074_60628100	0.0542503	CAGUCCA	ENST00000252744.5|ZSWIM6|ENSG00000130449.5|zinc finger, SWIM-type containing 6
hg19_v2_chr15_-_65809581_65809617	0.0531384	CAGUCCA	ENST00000341861.5|DPP8|ENSG00000074603.14|dipeptidyl-peptidase 8
hg19_v2_chr6_-_159421198_159421254	0.0523711	CAGUCCA	ENST00000252655.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000297262.3|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas) 	ENST00000367069.2|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr6_+_147830063_147830063	0.0513779	CAGUCCA	ENST00000367474.1|SAMD5|ENSG00000203727.3|sterile alpha motif domain containing 5
hg19_v2_chr15_-_35047166_35047204	0.0509597	CAGUCCA	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr10_+_88516396_88516426	0.0470567	CAGUCCA	ENST00000372037.3|BMPR1A|ENSG00000107779.7|bone morphogenetic protein receptor, type IA
hg19_v2_chr22_+_31556134_31556263	0.0443216	CAGUCCA	ENST00000426256.2|RNF185|ENSG00000138942.11|ring finger protein 185 	ENST00000326132.6|RNF185|ENSG00000138942.11|ring finger protein 185 	ENST00000266252.7|RNF185|ENSG00000138942.11|ring finger protein 185
hg19_v2_chr17_-_46671323_46671323	0.043281	CAGUCCA	ENST00000239151.5|HOXB5|ENSG00000120075.5|homeobox B5
hg19_v2_chr3_+_38495333_38495422	0.0427507	CAGUCCA	ENST00000352511.4|ACVR2B|ENSG00000114739.9|activin A receptor, type IIB
hg19_v2_chr2_+_179345173_179345221	0.0406162	CAGUCCA	ENST00000234453.5|PLEKHA3|ENSG00000116095.6|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3
hg19_v2_chrX_-_83757399_83757487	0.0404886	CAGUCCA	ENST00000373177.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000297977.5|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000506585.2|HDX|ENSG00000165259.9|highly divergent homeobox 	ENST00000449553.2|HDX|ENSG00000165259.9|highly divergent homeobox
hg19_v2_chr2_-_131850951_131851065	0.0396022	CAGUCCA	ENST00000409185.1|FAM168B|ENSG00000152102.13|family with sequence similarity 168, member B 	ENST00000389915.3|FAM168B|ENSG00000152102.13|family with sequence similarity 168, member B
hg19_v2_chr18_-_500692_500748	0.0393522	CAGUCCA	ENST00000400256.3|COLEC12|ENSG00000158270.10|collectin sub-family member 12
hg19_v2_chr20_-_32262165_32262269	0.0360536	CAGUCCA	ENST00000606690.1|NECAB3|ENSG00000125967.12|N-terminal EF-hand calcium binding protein 3 	ENST00000246190.6|NECAB3|ENSG00000125967.12|N-terminal EF-hand calcium binding protein 3 	ENST00000439478.1|NECAB3|ENSG00000125967.12|N-terminal EF-hand calcium binding protein 3 	ENST00000375238.4|NECAB3|ENSG00000125967.12|N-terminal EF-hand calcium binding protein 3
hg19_v2_chr2_+_157291953_157292003	0.0353293	CAGUCCA	ENST00000310454.6|GPD2|ENSG00000115159.11|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
hg19_v2_chr12_-_90049828_90049847	0.03415	CAGUCCA	ENST00000261173.2|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1 	ENST00000348959.3|ATP2B1|ENSG00000070961.10|ATPase, Ca++ transporting, plasma membrane 1
hg19_v2_chr18_-_19180681_19180711	0.0319269	CAGUCCA	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr9_+_82186872_82186898	0.028559	CAGUCCA	ENST00000376544.3|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) 	ENST00000376520.4|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr6_-_33168391_33168465	0.0275722	CAGUCCA	ENST00000374685.4|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000413614.2|RXRB|ENSG00000204231.6|retinoid X receptor, beta 	ENST00000374680.3|RXRB|ENSG00000204231.6|retinoid X receptor, beta
hg19_v2_chr2_-_55237484_55237585	0.0251321	CAGUCCA	ENST00000394609.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr17_-_8066250_8066301	0.0239863	CAGUCCA	ENST00000488857.1|VAMP2|ENSG00000220205.4|vesicle-associated membrane protein 2 (synaptobrevin 2) 	ENST00000481878.1|VAMP2|ENSG00000220205.4|vesicle-associated membrane protein 2 (synaptobrevin 2) 	ENST00000498285.1|RP11-599B13.6|ENSG00000263620.1|Uncharacterized protein  	ENST00000316509.6|VAMP2|ENSG00000220205.4|vesicle-associated membrane protein 2 (synaptobrevin 2)
hg19_v2_chr9_-_104145795_104145806	0.0234499	CAGUCCA	ENST00000259407.2|BAAT|ENSG00000136881.7|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)
hg19_v2_chr15_+_90931450_90931544	0.022459	CAGUCCA	ENST00000268182.5|IQGAP1|ENSG00000140575.8|IQ motif containing GTPase activating protein 1 	ENST00000560738.1|IQGAP1|ENSG00000140575.8|IQ motif containing GTPase activating protein 1 	ENST00000560418.1|IQGAP1|ENSG00000140575.8|IQ motif containing GTPase activating protein 1
hg19_v2_chr2_-_69870835_69870853	0.022414	CAGUCCA	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr20_+_306221_306239	0.0222077	CAGUCCA	ENST00000342665.2|SOX12|ENSG00000177732.6|SRY (sex determining region Y)-box 12
hg19_v2_chr6_-_28891709_28891769	0.0217147	CAGUCCA	ENST00000377194.3|TRIM27|ENSG00000204713.6|tripartite motif containing 27 	ENST00000377199.3|TRIM27|ENSG00000204713.6|tripartite motif containing 27
hg19_v2_chr5_-_159546396_159546470	0.0209881	CAGUCCA	ENST00000523662.1|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000456329.3|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A 	ENST00000307063.7|PWWP2A|ENSG00000170234.8|PWWP domain containing 2A
hg19_v2_chr6_-_114292449_114292474	0.0178014	CAGUCCA	ENST00000519065.1|HDAC2|ENSG00000196591.7|histone deacetylase 2
hg19_v2_chr4_-_100871506_100871545	0.0176756	CAGUCCA	ENST00000296417.5|H2AFZ|ENSG00000164032.7|H2A histone family, member Z
hg19_v2_chr4_-_99851766_99851788	0.0173636	CAGUCCA	ENST00000450253.2|EIF4E|ENSG00000151247.8|eukaryotic translation initiation factor 4E
hg19_v2_chr3_-_178984759_178984790	0.0161269	CAGUCCA	ENST00000349697.2|KCNMB3|ENSG00000171121.12|potassium large conductance calcium-activated channel, subfamily M beta member 3 	ENST00000497599.1|KCNMB3|ENSG00000171121.12|potassium large conductance calcium-activated channel, subfamily M beta member 3
hg19_v2_chr8_-_103876965_103877012	0.0158933	CAGUCCA	ENST00000337198.5|AZIN1|ENSG00000155096.9|antizyme inhibitor 1
hg19_v2_chr16_+_30935418_30935418	0.0155915	CAGUCCA	ENST00000338343.4|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr5_-_148930960_148931013	0.0152942	CAGUCCA	ENST00000261798.5|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1 	ENST00000377843.2|CSNK1A1|ENSG00000113712.12|casein kinase 1, alpha 1
hg19_v2_chr16_+_9185450_9185516	0.0152527	CAGUCCA	ENST00000327827.7|C16orf72|ENSG00000182831.7|chromosome 16 open reading frame 72
hg19_v2_chr8_+_67579807_67579887	0.0151294	CAGUCCA	ENST00000519289.1|C8orf44-SGK3|ENSG00000270024.1|C8orf44-SGK3 readthrough 	ENST00000519561.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44 	ENST00000521889.1|C8orf44|ENSG00000213865.3|chromosome 8 open reading frame 44
hg19_v2_chr17_+_45608430_45608490	0.014264	CAGUCCA	ENST00000322157.4|NPEPPS|ENSG00000141279.11|aminopeptidase puromycin sensitive
hg19_v2_chr15_-_75871589_75871676	0.0142419	CAGUCCA	ENST00000306726.2|PTPN9|ENSG00000169410.5|protein tyrosine phosphatase, non-receptor type 9
hg19_v2_chr8_+_26149007_26149061	0.0130625	CAGUCCA	ENST00000380737.3|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha 	ENST00000524169.1|PPP2R2A|ENSG00000221914.4|protein phosphatase 2, regulatory subunit B, alpha
hg19_v2_chr4_+_174089904_174089921	0.0127998	CAGUCCA	ENST00000265000.4|GALNT7|ENSG00000109586.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
hg19_v2_chr3_-_128902729_128902753	0.0124096	CAGUCCA	ENST00000451728.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000446936.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000502976.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000500450.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000441626.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr12_+_57984965_57985059	0.0122356	CAGUCCA	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr3_+_137906109_137906153	0.0109583	CAGUCCA	ENST00000481646.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000469044.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000491704.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8 	ENST00000461600.1|ARMC8|ENSG00000114098.13|armadillo repeat containing 8
hg19_v2_chr13_+_42622781_42622889	0.0107492	CAGUCCA	ENST00000337343.4|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000261491.5|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000379274.2|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta
hg19_v2_chr15_-_100273544_100273649	0.008811	CAGUCCA	ENST00000409796.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000545021.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000344791.2|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000332728.4|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4 	ENST00000450512.1|LYSMD4|ENSG00000183060.11|LysM, putative peptidoglycan-binding, domain containing 4
hg19_v2_chr15_+_76135622_76135719	0.00662583	CAGUCCA	ENST00000338677.4|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2 	ENST00000267938.4|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2 	ENST00000569423.1|UBE2Q2|ENSG00000140367.7|ubiquitin-conjugating enzyme E2Q family member 2
hg19_v2_chr19_-_46296011_46296061	0.00636595	CAGUCCA	ENST00000377735.3|DMWD|ENSG00000185800.7|dystrophia myotonica, WD repeat containing 	ENST00000270223.6|DMWD|ENSG00000185800.7|dystrophia myotonica, WD repeat containing
hg19_v2_chr8_+_27168988_27169021	0.006144	CAGUCCA	ENST00000397501.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000338238.4|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta 	ENST00000544172.1|PTK2B|ENSG00000120899.13|protein tyrosine kinase 2 beta
hg19_v2_chr14_-_64010046_64010107	0.00595615	CAGUCCA	ENST00000337537.3|PPP2R5E|ENSG00000154001.9|protein phosphatase 2, regulatory subunit B', epsilon isoform
hg19_v2_chrX_+_153639856_153639943	0.00469865	CAGUCCA	ENST00000426834.1|TAZ|ENSG00000102125.11|tafazzin 	ENST00000369790.4|TAZ|ENSG00000102125.11|tafazzin 	ENST00000454722.1|TAZ|ENSG00000102125.11|tafazzin 	ENST00000350743.4|TAZ|ENSG00000102125.11|tafazzin 	ENST00000299328.5|TAZ|ENSG00000102125.11|tafazzin 	ENST00000351413.4|TAZ|ENSG00000102125.11|tafazzin
hg19_v2_chr1_+_75594119_75594119	0.00436646	CAGUCCA	ENST00000294638.5|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr6_-_90529418_90529528	0.00328398	CAGUCCA	ENST00000439638.1|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast) 	ENST00000369393.3|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast) 	ENST00000428876.1|MDN1|ENSG00000112159.7|MDN1, midasin homolog (yeast)
hg19_v2_chr19_+_47421933_47421933	0.00163843	CAGUCCA	ENST00000404338.3|ARHGAP35|ENSG00000160007.13|Rho GTPase activating protein 35
hg19_v2_chr9_+_115513003_115513137	0.00153266	CAGUCCA	ENST00000374232.3|SNX30|ENSG00000148158.12|sorting nexin family member 30
hg19_v2_chr12_+_104850740_104850768	0.00150691	CAGUCCA	ENST00000547956.1|CHST11|ENSG00000171310.6|carbohydrate (chondroitin 4) sulfotransferase 11 	ENST00000549260.1|CHST11|ENSG00000171310.6|carbohydrate (chondroitin 4) sulfotransferase 11 	ENST00000303694.5|CHST11|ENSG00000171310.6|carbohydrate (chondroitin 4) sulfotransferase 11
