hg19_v2_chr7_-_95225768_95225967	0.476339	GGAGUGU	ENST00000005178.5|PDK4|ENSG00000004799.7|pyruvate dehydrogenase kinase, isozyme 4
hg19_v2_chr10_-_74856608_74856732	0.306415	GGAGUGU	ENST00000307116.2|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I 	ENST00000373008.2|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I 	ENST00000412021.2|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I 	ENST00000394890.2|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I 	ENST00000263556.3|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I 	ENST00000440381.1|P4HA1|ENSG00000122884.8|prolyl 4-hydroxylase, alpha polypeptide I
hg19_v2_chr8_+_102504651_102504683	0.285439	GGAGUGU	ENST00000251808.3|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila) 	ENST00000521085.1|GRHL2|ENSG00000083307.6|grainyhead-like 2 (Drosophila)
hg19_v2_chr6_-_35464727_35464738	0.225835	GGAGUGU	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr14_+_37667118_37667192	0.211513	GGAGUGU	ENST00000556615.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000327441.7|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1 	ENST00000536774.1|MIPOL1|ENSG00000151338.14|mirror-image polydactyly 1
hg19_v2_chr17_+_45608430_45608490	0.207769	GGAGUGU	ENST00000322157.4|NPEPPS|ENSG00000141279.11|aminopeptidase puromycin sensitive
hg19_v2_chr16_+_30077055_30077093	0.199053	GGAGUGU	ENST00000564595.2|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000569798.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr6_-_45983581_45983603	0.175706	GGAGUGU	ENST00000339561.6|CLIC5|ENSG00000112782.11|chloride intracellular channel 5
hg19_v2_chr8_-_29208183_29208208	0.16038	GGAGUGU	ENST00000240100.2|DUSP4|ENSG00000120875.4|dual specificity phosphatase 4
hg19_v2_chr5_+_162864575_162864620	0.145341	GGAGUGU	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr8_+_145159376_145159407	0.129587	GGAGUGU	ENST00000322428.5|MAF1|ENSG00000179632.5|MAF1 homolog (S. cerevisiae)
hg19_v2_chr19_+_46800289_46800327	0.114509	GGAGUGU	ENST00000377670.4|HIF3A|ENSG00000124440.11|hypoxia inducible factor 3, alpha subunit
hg19_v2_chr1_-_72748417_72748510	0.0935566	GGAGUGU	ENST00000357731.5|NEGR1|ENSG00000172260.9|neuronal growth regulator 1
hg19_v2_chr1_-_208417620_208417680	0.0931192	GGAGUGU	ENST00000367033.3|PLXNA2|ENSG00000076356.6|plexin A2
hg19_v2_chr1_-_149982624_149982719	0.0909941	GGAGUGU	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
hg19_v2_chrX_-_135056216_135056227	0.0856164	GGAGUGU	ENST00000305963.2|MMGT1|ENSG00000169446.4|membrane magnesium transporter 1
hg19_v2_chr19_-_8373173_8373263	0.0854116	GGAGUGU	ENST00000537716.2|CD320|ENSG00000167775.6|CD320 molecule 	ENST00000301458.5|CD320|ENSG00000167775.6|CD320 molecule
hg19_v2_chr1_+_25071848_25071944	0.0845578	GGAGUGU	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr1_+_16062820_16062900	0.0839015	GGAGUGU	ENST00000294454.5|SLC25A34|ENSG00000162461.7|solute carrier family 25, member 34
hg19_v2_chr2_-_86948245_86948245	0.0754591	GGAGUGU	ENST00000439940.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000604011.1|RNF103-CHMP3|ENSG00000249884.4|RNF103-CHMP3 readthrough
hg19_v2_chr12_-_56694142_56694178	0.0753998	GGAGUGU	ENST00000550655.1|CS|ENSG00000062485.14|citrate synthase 	ENST00000548567.1|CS|ENSG00000062485.14|citrate synthase 	ENST00000551430.2|CS|ENSG00000062485.14|citrate synthase 	ENST00000351328.3|CS|ENSG00000062485.14|citrate synthase
hg19_v2_chr19_-_2456922_2456994	0.0738902	GGAGUGU	ENST00000582871.1|LMNB2|ENSG00000176619.6|lamin B2 	ENST00000325327.3|LMNB2|ENSG00000176619.6|lamin B2
hg19_v2_chr6_+_72596604_72596727	0.0721936	GGAGUGU	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr10_-_32345305_32345376	0.0657322	GGAGUGU	ENST00000302418.4|KIF5B|ENSG00000170759.10|kinesin family member 5B
hg19_v2_chr2_-_86790593_86790614	0.0649172	GGAGUGU	ENST00000263856.4|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3 	ENST00000409225.2|CHMP3|ENSG00000115561.10|charged multivesicular body protein 3
hg19_v2_chr2_-_219925189_219925189	0.0602215	GGAGUGU	ENST00000295731.6|IHH|ENSG00000163501.6|indian hedgehog
hg19_v2_chr7_+_114055052_114055378	0.0527436	GGAGUGU	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr1_-_205782304_205782332	0.0521393	GGAGUGU	ENST00000367137.3|SLC41A1|ENSG00000133065.6|solute carrier family 41 (magnesium transporter), member 1
hg19_v2_chr1_-_245027833_245027855	0.0518885	GGAGUGU	ENST00000444376.2|HNRNPU|ENSG00000153187.12|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
hg19_v2_chr19_+_41816053_41816178	0.0513773	GGAGUGU	ENST00000269967.3|CCDC97|ENSG00000142039.3|coiled-coil domain containing 97
hg19_v2_chr6_+_108881012_108881038	0.0511	GGAGUGU	ENST00000343882.6|FOXO3|ENSG00000118689.10|forkhead box O3
hg19_v2_chr2_+_14772810_14772853	0.0439961	GGAGUGU	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr4_-_146859623_146859669	0.0428719	GGAGUGU	ENST00000379448.4|ZNF827|ENSG00000151612.11|zinc finger protein 827 	ENST00000513320.1|ZNF827|ENSG00000151612.11|zinc finger protein 827
hg19_v2_chrX_+_154254960_154255103	0.0412032	GGAGUGU	ENST00000369498.3|FUNDC2|ENSG00000165775.13|FUN14 domain containing 2
hg19_v2_chr8_-_68255912_68255952	0.0411284	GGAGUGU	ENST00000262215.3|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 	ENST00000519436.1|ARFGEF1|ENSG00000066777.4|ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)
hg19_v2_chr19_-_49314269_49314293	0.0398077	GGAGUGU	ENST00000545387.2|BCAT2|ENSG00000105552.10|branched chain amino-acid transaminase 2, mitochondrial 	ENST00000316273.6|BCAT2|ENSG00000105552.10|branched chain amino-acid transaminase 2, mitochondrial 	ENST00000402551.1|BCAT2|ENSG00000105552.10|branched chain amino-acid transaminase 2, mitochondrial 	ENST00000598162.1|BCAT2|ENSG00000105552.10|branched chain amino-acid transaminase 2, mitochondrial 	ENST00000599246.1|BCAT2|ENSG00000105552.10|branched chain amino-acid transaminase 2, mitochondrial
hg19_v2_chr7_+_94285637_94285689	0.0387766	GGAGUGU	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr5_-_141392538_141392606	0.0355165	GGAGUGU	ENST00000503794.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000510194.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000504424.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000513454.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000458112.2|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000542860.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000503229.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000500692.2|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000311337.6|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000504139.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1 	ENST00000505689.1|GNPDA1|ENSG00000113552.11|glucosamine-6-phosphate deaminase 1
hg19_v2_chr15_-_83316254_83316368	0.0331509	GGAGUGU	ENST00000567678.1|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1 	ENST00000450751.2|CPEB1|ENSG00000214575.5|cytoplasmic polyadenylation element binding protein 1
hg19_v2_chr19_-_47291843_47291859	0.0317192	GGAGUGU	ENST00000542575.2|SLC1A5|ENSG00000105281.8|solute carrier family 1 (neutral amino acid transporter), member 5
hg19_v2_chr14_-_77787198_77787244	0.0295307	GGAGUGU	ENST00000261534.4|POMT2|ENSG00000009830.7|protein-O-mannosyltransferase 2
hg19_v2_chr7_-_33102338_33102395	0.0292909	GGAGUGU	ENST00000610140.1|NT5C3A|ENSG00000122643.14|5'-nucleotidase, cytosolic IIIA
hg19_v2_chr17_-_4269768_4269835	0.0286704	GGAGUGU	ENST00000396981.2|UBE2G1|ENSG00000132388.8|ubiquitin-conjugating enzyme E2G 1
hg19_v2_chr20_+_32581452_32581520	0.0286119	GGAGUGU	ENST00000375114.3|RALY|ENSG00000125970.7|RALY heterogeneous nuclear ribonucleoprotein 	ENST00000448364.1|RALY|ENSG00000125970.7|RALY heterogeneous nuclear ribonucleoprotein
hg19_v2_chr21_-_40685477_40685496	0.0270023	GGAGUGU	ENST00000342449.3|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chr16_-_30381580_30381633	0.024838	GGAGUGU	ENST00000409939.3|TBC1D10B|ENSG00000169221.9|TBC1 domain family, member 10B
hg19_v2_chr3_+_9773409_9773479	0.0240643	GGAGUGU	ENST00000433861.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000424362.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000383829.2|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000302054.3|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1 	ENST00000420291.1|BRPF1|ENSG00000156983.11|bromodomain and PHD finger containing, 1
hg19_v2_chr19_-_6279932_6280000	0.0204431	GGAGUGU	ENST00000252674.7|MLLT1|ENSG00000130382.7|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
hg19_v2_chrX_+_71130938_71130938	0.0199412	GGAGUGU	ENST00000540800.1|NHSL2|ENSG00000204131.6|NHS-like 2
hg19_v2_chr1_+_161087873_161087925	0.0185306	GGAGUGU	ENST00000368009.2|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000368007.4|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000368008.1|NIT1|ENSG00000158793.9|nitrilase 1 	ENST00000392190.5|NIT1|ENSG00000158793.9|nitrilase 1
hg19_v2_chr14_+_33408449_33408525	0.016077	GGAGUGU	ENST00000346562.2|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000341321.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000548645.1|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000356141.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000357798.5|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3
hg19_v2_chr15_-_72523454_72523684	0.0158062	GGAGUGU	ENST00000565154.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000565184.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000389093.3|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000449901.2|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000335181.5|PKM|ENSG00000067225.13|pyruvate kinase, muscle 	ENST00000319622.6|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr3_-_187009646_187009778	0.0137434	GGAGUGU	ENST00000296280.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392470.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000169293.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000439271.1|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392472.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392475.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr11_-_108369101_108369159	0.0135264	GGAGUGU	ENST00000323468.5|KDELC2|ENSG00000178202.8|KDEL (Lys-Asp-Glu-Leu) containing 2
hg19_v2_chr14_+_23340822_23341004	0.0127617	GGAGUGU	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr1_-_161102421_161102478	0.0114473	GGAGUGU	ENST00000490843.2|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000368006.3|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000392188.1|DEDD|ENSG00000158796.12|death effector domain containing 	ENST00000545495.1|DEDD|ENSG00000158796.12|death effector domain containing
hg19_v2_chr5_-_11904152_11904166	0.010942	GGAGUGU	ENST00000304623.8|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2 	ENST00000458100.2|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2
hg19_v2_chr3_+_47324424_47324447	0.0100476	GGAGUGU	ENST00000437353.1|KLHL18|ENSG00000114648.7|kelch-like family member 18 	ENST00000232766.5|KLHL18|ENSG00000114648.7|kelch-like family member 18 	ENST00000455924.2|KLHL18|ENSG00000114648.7|kelch-like family member 18
hg19_v2_chr5_+_96271141_96271168	0.00999522	GGAGUGU	ENST00000231368.5|LNPEP|ENSG00000113441.11|leucyl/cystinyl aminopeptidase
hg19_v2_chr2_-_96811170_96811186	0.00976467	GGAGUGU	ENST00000288943.4|DUSP2|ENSG00000158050.4|dual specificity phosphatase 2
hg19_v2_chr1_-_153895377_153895465	0.00945921	GGAGUGU	ENST00000368655.4|GATAD2B|ENSG00000143614.7|GATA zinc finger domain containing 2B
hg19_v2_chrX_-_48901012_48901050	0.00929951	GGAGUGU	ENST00000315869.7|TFE3|ENSG00000068323.12|transcription factor binding to IGHM enhancer 3
hg19_v2_chr19_+_47104493_47104549	0.0076879	GGAGUGU	ENST00000291295.9|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000597743.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr1_-_109940550_109940573	0.00497229	GGAGUGU	ENST00000256637.6|SORT1|ENSG00000134243.7|sortilin 1
hg19_v2_chr17_-_27916621_27916680	0.00401647	GGAGUGU	ENST00000225394.3|GIT1|ENSG00000108262.11|G protein-coupled receptor kinase interacting ArfGAP 1
hg19_v2_chr4_-_76598296_76598318	0.00337927	GGAGUGU	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr10_-_61666267_61666414	0.00298751	GGAGUGU	ENST00000263102.6|CCDC6|ENSG00000108091.10|coiled-coil domain containing 6
hg19_v2_chr8_-_117886955_117887105	0.00281962	GGAGUGU	ENST00000297338.2|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
