hg19_v2_chr22_+_23247030_23247061	2.90503	GLI3	ENST00000390324.2|IGLJ3|ENSG00000211678.2|immunoglobulin lambda joining 3
hg19_v2_chr9_+_34458771_34458850	2.61208	GLI3	ENST00000437363.1|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1 	ENST00000242317.4|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1
hg19_v2_chr14_-_36983034_36983064	2.48454	GLI3	ENST00000518529.2|SFTA3|ENSG00000229415.5|surfactant associated 3
hg19_v2_chr12_-_45270077_45270143	2.31326	GLI3	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr20_+_62327996_62328021	2.26368	GLI3	ENST00000369996.1|TNFRSF6B|ENSG00000243509.4|tumor necrosis factor receptor superfamily, member 6b, decoy
hg19_v2_chr2_-_85895295_85895331	2.18267	GLI3	ENST00000428225.1|SFTPB|ENSG00000168878.12|surfactant protein B 	ENST00000519937.2|SFTPB|ENSG00000168878.12|surfactant protein B
hg19_v2_chr12_-_45270151_45270162	2.07888	GLI3	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr10_+_81370689_81370711	2.06986	GLI3	ENST00000372308.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000398636.3|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000428376.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000372313.5|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000419470.2|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000429958.1|SFTPA1|ENSG00000122852.10|surfactant protein A1 	ENST00000439264.1|SFTPA1|ENSG00000122852.10|surfactant protein A1
hg19_v2_chr6_+_17102489_17102489	1.99866	GLI3	ENST00000536551.1|STMND1|ENSG00000230873.4|stathmin domain containing 1
hg19_v2_chr15_+_81591757_81591780	1.92794	GLI3	ENST00000558332.1|IL16|ENSG00000172349.12|interleukin 16
hg19_v2_chr17_-_6735012_6735030	1.84401	GLI3	ENST00000535086.1|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr22_+_23241661_23241804	1.82973	GLI3	ENST00000390322.2|IGLJ2|ENSG00000211676.2|immunoglobulin lambda joining 2
hg19_v2_chr5_-_180018540_180018549	1.81223	GLI3	ENST00000292641.3|SCGB3A1|ENSG00000161055.3|secretoglobin, family 3A, member 1
hg19_v2_chr19_+_782755_782833	1.76931	GLI3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr16_+_2880157_2880210	1.71339	GLI3	ENST00000382280.3|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chrX_-_101771645_101771712	1.69132	GLI3	ENST00000289373.4|TMSB15A|ENSG00000158164.6|thymosin beta 15a
hg19_v2_chr14_-_106330824_106330846	1.67204	GLI3	ENST00000463911.1|IGHJ3|ENSG00000242887.1|immunoglobulin heavy joining 3
hg19_v2_chr17_-_6735035_6735080	1.65053	GLI3	ENST00000338694.2|TEKT1|ENSG00000167858.8|tektin 1
hg19_v2_chr12_-_52887034_52887049	1.6389	GLI3	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr4_-_5021164_5021199	1.62662	GLI3	ENST00000506508.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000509419.1|CYTL1|ENSG00000170891.6|cytokine-like 1 	ENST00000307746.4|CYTL1|ENSG00000170891.6|cytokine-like 1
hg19_v2_chr12_-_11463353_11463372	1.6173	GLI3	ENST00000279575.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000535904.1|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4 	ENST00000445719.2|PRB4|ENSG00000230657.2|proline-rich protein BstNI subfamily 4
hg19_v2_chr16_+_215965_215984	1.61243	GLI3	ENST00000356815.3|HBM|ENSG00000206177.2|hemoglobin, mu
hg19_v2_chr20_+_44098385_44098401	1.59073	GLI3	ENST00000217425.5|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2 	ENST00000339946.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr16_-_89268070_89268100	1.57215	GLI3	ENST00000562855.2|SLC22A31|ENSG00000259803.2|solute carrier family 22, member 31
hg19_v2_chr12_+_50355647_50355661	1.56246	GLI3	ENST00000293599.6|AQP5|ENSG00000161798.6|aquaporin 5
hg19_v2_chr14_-_106805716_106805716	1.53605	GLI3	ENST00000438142.2|IGHV4-31|ENSG00000231475.2|immunoglobulin heavy variable 4-31
hg19_v2_chr20_+_62185491_62185539	1.53031	GLI3	ENST00000370097.1|C20orf195|ENSG00000125531.5|chromosome 20 open reading frame 195
hg19_v2_chrX_+_22056165_22056173	1.52416	GLI3	ENST00000535894.1|PHEX|ENSG00000102174.7|phosphate regulating endopeptidase homolog, X-linked
hg19_v2_chr12_-_10321754_10321781	1.51186	GLI3	ENST00000539518.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr17_+_72270380_72270420	1.50746	GLI3	ENST00000582036.1|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2 	ENST00000307504.5|DNAI2|ENSG00000171595.9|dynein, axonemal, intermediate chain 2
hg19_v2_chr16_-_85146040_85146114	1.50121	GLI3	ENST00000539556.1|FAM92B|ENSG00000153789.8|family with sequence similarity 92, member B
hg19_v2_chr6_-_46703069_46703081	1.48068	GLI3	ENST00000538237.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 	ENST00000274793.7|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr4_-_90758227_90758379	1.46791	GLI3	ENST00000506691.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394986.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000506244.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394989.2|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000394991.3|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr3_-_46506358_46506404	1.46026	GLI3	ENST00000417439.1|LTF|ENSG00000012223.8|lactotransferrin 	ENST00000431944.1|LTF|ENSG00000012223.8|lactotransferrin
hg19_v2_chr15_+_29211570_29211611	1.4512	GLI3	ENST00000558804.1|APBA2|ENSG00000034053.10|amyloid beta (A4) precursor protein-binding, family A, member 2
hg19_v2_chr14_-_107211459_107211478	1.42877	GLI3	ENST00000390636.2|IGHV3-73|ENSG00000211976.2|immunoglobulin heavy variable 3-73
hg19_v2_chr3_-_195538728_195538754	1.42638	GLI3	ENST00000349607.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated 	ENST00000346145.4|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr14_-_106322288_106322325	1.42076	GLI3	ENST00000390559.2|IGHM|ENSG00000211899.3|immunoglobulin heavy constant mu
hg19_v2_chr20_+_44098346_44098373	1.38264	GLI3	ENST00000372676.3|WFDC2|ENSG00000101443.13|WAP four-disulfide core domain 2
hg19_v2_chr7_+_142495131_142495159	1.38174	GLI3	ENST00000390419.1|TRBJ2-7|ENSG00000211771.1|T cell receptor beta joining 2-7
hg19_v2_chr20_-_3762087_3762100	1.37801	GLI3	ENST00000379756.3|SPEF1|ENSG00000101222.8|sperm flagellar 1
hg19_v2_chr14_-_106845789_106845851	1.37136	GLI3	ENST00000390617.2|IGHV3-35|ENSG00000211957.2|immunoglobulin heavy variable 3-35 (non-functional)
hg19_v2_chr16_+_57702099_57702202	1.33775	GLI3	ENST00000333493.4|GPR97|ENSG00000182885.12|G protein-coupled receptor 97 	ENST00000327655.6|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr1_+_43613612_43613623	1.30947	GLI3	ENST00000335282.4|FAM183A|ENSG00000186973.6|family with sequence similarity 183, member A
hg19_v2_chr6_-_46703430_46703465	1.3019	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr5_-_172755056_172755219	1.2939	GLI3	ENST00000520648.1|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr22_+_22764088_22764105	1.29031	GLI3	ENST00000390299.2|IGLV1-40|ENSG00000211653.2|immunoglobulin lambda variable 1-40
hg19_v2_chr14_-_106330458_106330479	1.28698	GLI3	ENST00000461719.1|IGHJ4|ENSG00000240041.1|immunoglobulin heavy joining 4
hg19_v2_chr16_+_84209539_84209585	1.28344	GLI3	ENST00000569735.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr4_-_74847800_74847841	1.27666	GLI3	ENST00000296029.3|PF4|ENSG00000163737.3|platelet factor 4
hg19_v2_chr4_-_57524061_57524074	1.27635	GLI3	ENST00000508121.1|HOPX|ENSG00000171476.17|HOP homeobox
hg19_v2_chr8_-_86290333_86290348	1.24535	GLI3	ENST00000521846.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523022.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000524324.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519991.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000520663.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517590.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522579.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522814.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000522662.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000523858.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000519129.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr8_+_133931648_133931685	1.24498	GLI3	ENST00000519178.1|TG|ENSG00000042832.7|thyroglobulin 	ENST00000542445.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr19_+_44084696_44084790	1.2392	GLI3	ENST00000562255.1|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing 	ENST00000569031.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr1_+_43613566_43613608	1.22828	GLI3	ENST00000409396.1|FAM183A|ENSG00000186973.6|family with sequence similarity 183, member A
hg19_v2_chr15_-_72490114_72490145	1.2056	GLI3	ENST00000309731.7|GRAMD2|ENSG00000175318.7|GRAM domain containing 2
hg19_v2_chr11_-_111383064_111383092	1.20057	GLI3	ENST00000525791.1|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000456861.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4 	ENST00000356018.2|BTG4|ENSG00000137707.9|B-cell translocation gene 4
hg19_v2_chr10_-_23528745_23528745	1.16375	GLI3	ENST00000376501.5|C10orf115|ENSG00000204566.6|chromosome 10 open reading frame 115
hg19_v2_chr1_+_183155373_183155423	1.14765	GLI3	ENST00000493293.1|LAMC2|ENSG00000058085.10|laminin, gamma 2 	ENST00000264144.4|LAMC2|ENSG00000058085.10|laminin, gamma 2
hg19_v2_chr9_+_34458851_34458908	1.14511	GLI3	ENST00000545019.1|DNAI1|ENSG00000122735.11|dynein, axonemal, intermediate chain 1
hg19_v2_chr7_+_142494920_142494955	1.14427	GLI3	ENST00000390418.1|TRBJ2-6|ENSG00000211770.1|T cell receptor beta joining 2-6
hg19_v2_chr14_-_107083690_107083830	1.13548	GLI3	ENST00000455737.1|IGHV4-59|ENSG00000224373.2|immunoglobulin heavy variable 4-59 	ENST00000390629.2|IGHV4-59|ENSG00000224373.2|immunoglobulin heavy variable 4-59
hg19_v2_chr3_-_195538760_195538775	1.12538	GLI3	ENST00000475231.1|MUC4|ENSG00000145113.17|mucin 4, cell surface associated
hg19_v2_chr7_+_142494525_142494558	1.11856	GLI3	ENST00000390415.1|TRBJ2-3|ENSG00000211767.1|T cell receptor beta joining 2-3
hg19_v2_chr19_-_49250054_49250166	1.11825	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1 	ENST00000332955.2|IZUMO1|ENSG00000182264.4|izumo sperm-egg fusion 1
hg19_v2_chr14_-_107095662_107095662	1.09809	GLI3	ENST00000390630.2|IGHV4-61|ENSG00000211970.2|immunoglobulin heavy variable 4-61
hg19_v2_chr6_-_30899924_30899954	1.09772	GLI3	ENST00000359086.3|SFTA2|ENSG00000196260.3|surfactant associated 2
hg19_v2_chrX_+_106449862_106449880	1.07853	GLI3	ENST00000372453.3|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3 	ENST00000535523.1|PIH1D3|ENSG00000080572.8|PIH1 domain containing 3
hg19_v2_chr7_+_142494795_142494838	1.06069	GLI3	ENST00000390417.1|TRBJ2-5|ENSG00000211769.1|T cell receptor beta joining 2-5
hg19_v2_chr1_-_182573514_182573543	1.05544	GLI3	ENST00000367558.5|RGS16|ENSG00000143333.6|regulator of G-protein signaling 16
hg19_v2_chr1_-_47697387_47697457	1.0495	GLI3	ENST00000371884.2|TAL1|ENSG00000162367.7|T-cell acute lymphocytic leukemia 1
hg19_v2_chr2_+_228736321_228736332	1.04876	GLI3	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr16_+_68679193_68679253	1.04704	GLI3	ENST00000581171.1|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr14_-_107114267_107114277	1.03953	GLI3	ENST00000454421.2|IGHV3-64|ENSG00000223648.2|immunoglobulin heavy variable 3-64
hg19_v2_chr16_+_89686991_89687015	1.03755	GLI3	ENST00000393092.3|DPEP1|ENSG00000015413.5|dipeptidase 1 (renal)
hg19_v2_chr1_+_201979645_201979721	1.0346	GLI3	ENST00000367284.5|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 	ENST00000367283.3|ELF3|ENSG00000163435.11|E74-like factor 3 (ets domain transcription factor, epithelial-specific )
hg19_v2_chr5_-_44388899_44388918	1.02991	GLI3	ENST00000264664.4|FGF10|ENSG00000070193.4|fibroblast growth factor 10
hg19_v2_chr2_-_99485825_99485855	1.02588	GLI3	ENST00000423771.1|KIAA1211L|ENSG00000196872.6|KIAA1211-like
hg19_v2_chr14_-_106791536_106791536	1.01765	GLI3	ENST00000390613.2|IGHV3-30|ENSG00000211953.2|immunoglobulin heavy variable 3-30
hg19_v2_chr16_+_812506_812524	1.01668	GLI3	ENST00000569566.1|MSLN|ENSG00000102854.10|mesothelin
hg19_v2_chr7_+_48211048_48211063	1.01662	GLI3	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr12_-_45269430_45269440	1.01054	GLI3	ENST00000395487.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_-_153538292_153538342	1.00992	GLI3	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr14_-_36990061_36990154	1.00649	GLI3	ENST00000546983.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr17_+_76422409_76422409	1.00299	GLI3	ENST00000600087.1|AC061992.1|ENSG00000268965.1|Uncharacterized protein
hg19_v2_chr9_+_72435709_72435743	0.99743	GLI3	ENST00000377197.3|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135 	ENST00000527647.1|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135
hg19_v2_chr11_-_111320706_111320741	0.997196	GLI3	ENST00000531398.1|POU2AF1|ENSG00000110777.7|POU class 2 associating factor 1
hg19_v2_chr19_+_41117770_41117817	0.996823	GLI3	ENST00000601032.1|LTBP4|ENSG00000090006.13|latent transforming growth factor beta binding protein 4
hg19_v2_chr2_-_136875712_136875735	0.98005	GLI3	ENST00000241393.3|CXCR4|ENSG00000121966.6|chemokine (C-X-C motif) receptor 4
hg19_v2_chr14_+_29236269_29236287	0.97868	GLI3	ENST00000313071.4|FOXG1|ENSG00000176165.7|forkhead box G1
hg19_v2_chr6_-_133084580_133084605	0.967039	GLI3	ENST00000525270.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000530536.1|VNN2|ENSG00000112303.9|vanin 2 	ENST00000524919.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr19_-_35992780_35992815	0.966033	GLI3	ENST00000593342.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000601650.1|DMKN|ENSG00000161249.16|dermokine 	ENST00000408915.2|DMKN|ENSG00000161249.16|dermokine
hg19_v2_chr5_+_68788594_68788656	0.960725	GLI3	ENST00000396442.2|OCLN|ENSG00000197822.6|occludin 	ENST00000380766.2|OCLN|ENSG00000197822.6|occludin
hg19_v2_chr16_+_57728701_57728748	0.957302	GLI3	ENST00000569375.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000360716.3|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000569167.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000394337.4|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000563126.1|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135 	ENST00000336825.8|CCDC135|ENSG00000159625.10|coiled-coil domain containing 135
hg19_v2_chr13_-_60738003_60738121	0.947325	GLI3	ENST00000400330.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400324.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr16_+_68771128_68771255	0.946449	GLI3	ENST00000261769.5|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial) 	ENST00000422392.2|CDH1|ENSG00000039068.14|cadherin 1, type 1, E-cadherin (epithelial)
hg19_v2_chr20_-_22566089_22566097	0.945412	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr14_-_107219365_107219365	0.943251	GLI3	ENST00000424969.2|IGHV3-74|ENSG00000224650.2|immunoglobulin heavy variable 3-74
hg19_v2_chrX_-_70329118_70329194	0.942031	GLI3	ENST00000374188.3|IL2RG|ENSG00000147168.8|interleukin 2 receptor, gamma
hg19_v2_chr15_-_45422056_45422136	0.936064	GLI3	ENST00000267803.4|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559014.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558851.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559988.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558996.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558422.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559226.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558326.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000558377.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1 	ENST00000559644.1|DUOXA1|ENSG00000140254.8|dual oxidase maturation factor 1
hg19_v2_chr16_+_68678739_68678833	0.932618	GLI3	ENST00000264012.4|CDH3|ENSG00000062038.9|cadherin 3, type 1, P-cadherin (placental)
hg19_v2_chr14_-_106330072_106330072	0.927584	GLI3	ENST00000488476.1|IGHJ5|ENSG00000242472.1|immunoglobulin heavy joining 5
hg19_v2_chr15_+_45422178_45422216	0.920901	GLI3	ENST00000389037.3|DUOX1|ENSG00000137857.13|dual oxidase 1 	ENST00000558322.1|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr1_+_104198640_104198640	0.91633	GLI3	ENST00000422549.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr7_+_142334156_142334167	0.904619	GLI3	ENST00000390394.3|TRBV20-1|ENSG00000211747.3|T cell receptor beta variable 20-1
hg19_v2_chr15_+_45422131_45422172	0.899118	GLI3	ENST00000321429.4|DUOX1|ENSG00000137857.13|dual oxidase 1
hg19_v2_chr1_+_26869597_26869637	0.893169	GLI3	ENST00000530003.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr22_-_30867973_30868036	0.883166	GLI3	ENST00000402286.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000401751.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000539629.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000403066.1|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae) 	ENST00000215812.4|SEC14L3|ENSG00000100012.7|SEC14-like 3 (S. cerevisiae)
hg19_v2_chr14_-_106622419_106622419	0.881849	GLI3	ENST00000390604.2|IGHV3-16|ENSG00000211944.2|immunoglobulin heavy variable 3-16 (non-functional)
hg19_v2_chr6_-_32784687_32784839	0.877805	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta 	ENST00000438763.2|HLA-DOB|ENSG00000241106.2|major histocompatibility complex, class II, DO beta
hg19_v2_chr12_-_10542617_10542647	0.877469	GLI3	ENST00000240618.6|KLRK1|ENSG00000213809.4|killer cell lectin-like receptor subfamily K, member 1
hg19_v2_chr1_+_170904612_170904677	0.874736	GLI3	ENST00000367759.4|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9 	ENST00000367758.3|MROH9|ENSG00000117501.10|maestro heat-like repeat family member 9
hg19_v2_chr14_-_61748550_61748559	0.869566	GLI3	ENST00000555868.1|TMEM30B|ENSG00000182107.5|transmembrane protein 30B
hg19_v2_chr5_+_156569944_156570031	0.869432	GLI3	ENST00000521769.1|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr6_+_147091575_147091715	0.838661	GLI3	ENST00000326916.8|ADGB|ENSG00000118492.12|androglobin 	ENST00000470716.2|ADGB|ENSG00000118492.12|androglobin 	ENST00000367488.1|ADGB|ENSG00000118492.12|androglobin
hg19_v2_chr22_+_22730353_22730360	0.835047	GLI3	ENST00000390296.2|IGLV5-45|ENSG00000211650.2|immunoglobulin lambda variable 5-45
hg19_v2_chr9_+_99449322_99449347	0.834084	GLI3	ENST00000423924.1|RP11-535M15.1|ENSG00000224848.1|RP11-535M15.1
hg19_v2_chr14_-_106781017_106781017	0.826766	GLI3	ENST00000390612.2|IGHV4-28|ENSG00000211952.2|immunoglobulin heavy variable 4-28
hg19_v2_chr16_-_5116025_5116111	0.825642	GLI3	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr3_+_153839149_153839251	0.821363	GLI3	ENST00000465093.1|ARHGEF26|ENSG00000114790.8|Rho guanine nucleotide exchange factor (GEF) 26 	ENST00000465817.1|ARHGEF26|ENSG00000114790.8|Rho guanine nucleotide exchange factor (GEF) 26
hg19_v2_chr1_-_160990886_160990921	0.821036	GLI3	ENST00000537746.1|F11R|ENSG00000158769.13|F11 receptor
hg19_v2_chr19_+_18284477_18284667	0.820909	GLI3	ENST00000407280.3|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr19_+_35820064_35820115	0.816324	GLI3	ENST00000341773.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600131.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000270311.6|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000595780.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000597916.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000593867.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000600424.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000599811.1|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000536635.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000085219.5|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000544992.2|CD22|ENSG00000012124.10|CD22 molecule 	ENST00000419549.2|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr3_-_58652523_58652575	0.81578	GLI3	ENST00000489857.1|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D 	ENST00000358781.2|FAM3D|ENSG00000198643.2|family with sequence similarity 3, member D
hg19_v2_chr14_-_106478603_106478603	0.810402	GLI3	ENST00000390596.2|IGHV4-4|ENSG00000211936.2|immunoglobulin heavy variable 4-4
hg19_v2_chr19_+_36024310_36024329	0.806654	GLI3	ENST00000222286.4|GAPDHS|ENSG00000105679.4|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg19_v2_chr16_+_28996114_28996166	0.801302	GLI3	ENST00000395461.3|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr22_-_42322795_42322822	0.797604	GLI3	ENST00000291232.3|TNFRSF13C|ENSG00000159958.3|tumor necrosis factor receptor superfamily, member 13C
hg19_v2_chr12_+_122667658_122667698	0.796003	GLI3	ENST00000339777.4|LRRC43|ENSG00000158113.8|leucine rich repeat containing 43 	ENST00000425921.1|LRRC43|ENSG00000158113.8|leucine rich repeat containing 43
hg19_v2_chr19_+_676385_676403	0.789575	GLI3	ENST00000166139.4|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr9_+_135285579_135285615	0.787494	GLI3	ENST00000343036.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171 	ENST00000393216.2|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171
hg19_v2_chr7_-_108096822_108096889	0.781917	GLI3	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr1_+_48688357_48688412	0.780075	GLI3	ENST00000533824.1|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000438567.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000236495.5|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9 	ENST00000420136.2|SLC5A9|ENSG00000117834.8|solute carrier family 5 (sodium/sugar cotransporter), member 9
hg19_v2_chr22_-_50970566_50970644	0.778646	GLI3	ENST00000405135.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000401779.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr2_-_224702270_224702326	0.7766	GLI3	ENST00000396654.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000396653.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000423110.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit 	ENST00000443700.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr20_-_22565101_22565223	0.776472	GLI3	ENST00000419308.2|FOXA2|ENSG00000125798.10|forkhead box A2
hg19_v2_chr19_-_39832563_39832623	0.772129	GLI3	ENST00000599274.1|CTC-246B18.10|ENSG00000269246.1|CTC-246B18.10
hg19_v2_chr6_+_43968306_43968377	0.768366	GLI3	ENST00000442114.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000336600.5|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000439969.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223
hg19_v2_chr20_-_1306351_1306367	0.768119	GLI3	ENST00000381812.1|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr3_+_130300585_130300585	0.752796	GLI3	ENST00000511332.1|COL6A6|ENSG00000206384.6|collagen, type VI, alpha 6
hg19_v2_chr12_-_54779511_54779577	0.750439	GLI3	ENST00000551109.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000546970.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr1_-_104238574_104238574	0.747304	GLI3	ENST00000425410.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr9_+_72435749_72435876	0.736654	GLI3	ENST00000480564.1|C9orf135|ENSG00000204711.4|chromosome 9 open reading frame 135
hg19_v2_chr19_+_5914213_5914286	0.734568	GLI3	ENST00000222125.5|CAPS|ENSG00000105519.8|calcyphosine 	ENST00000452990.2|CAPS|ENSG00000105519.8|calcyphosine 	ENST00000588865.1|CAPS|ENSG00000105519.8|calcyphosine
hg19_v2_chr11_+_46403303_46403316	0.733635	GLI3	ENST00000407067.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395565.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_-_104239076_104239076	0.732053	GLI3	ENST00000370080.3|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr6_-_133084564_133084578	0.729243	GLI3	ENST00000532012.1|VNN2|ENSG00000112303.9|vanin 2
hg19_v2_chr8_+_11351494_11351511	0.72556	GLI3	ENST00000259089.4|BLK|ENSG00000136573.8|B lymphoid tyrosine kinase
hg19_v2_chr19_-_44285401_44285446	0.7239	GLI3	ENST00000262888.3|KCNN4|ENSG00000104783.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
hg19_v2_chr12_-_52867569_52867598	0.722876	GLI3	ENST00000252250.6|KRT6C|ENSG00000170465.9|keratin 6C
hg19_v2_chr20_+_44637526_44637554	0.721298	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
hg19_v2_chr20_-_1306391_1306513	0.72081	GLI3	ENST00000339987.3|SDCBP2|ENSG00000125775.10|syndecan binding protein (syntenin) 2
hg19_v2_chr3_-_150421676_150421723	0.719328	GLI3	ENST00000474463.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr1_-_153538011_153538030	0.715118	GLI3	ENST00000368707.4|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr9_-_117160738_117160783	0.714152	GLI3	ENST00000448674.1|RP11-9M16.2|ENSG00000235119.1|RP11-9M16.2
hg19_v2_chrX_+_51149767_51149829	0.712851	GLI3	ENST00000342995.2|CXorf67|ENSG00000187690.2|chromosome X open reading frame 67
hg19_v2_chr8_+_110374683_110374759	0.712522	GLI3	ENST00000378402.5|PKHD1L1|ENSG00000205038.7|polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1
hg19_v2_chr7_+_130131907_130131947	0.71215	GLI3	ENST00000223215.4|MEST|ENSG00000106484.10|mesoderm specific transcript 	ENST00000437945.1|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr19_-_19754354_19754370	0.711281	GLI3	ENST00000587238.1|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr19_-_46318561_46318577	0.710515	GLI3	ENST00000221538.3|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr19_+_2096868_2096922	0.70893	GLI3	ENST00000395296.1|IZUMO4|ENSG00000099840.9|IZUMO family member 4 	ENST00000395301.3|IZUMO4|ENSG00000099840.9|IZUMO family member 4
hg19_v2_chr11_+_59824127_59824161	0.706113	GLI3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr16_+_67381263_67381284	0.703135	GLI3	ENST00000541146.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000563189.1|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36 	ENST00000290940.7|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr12_-_45269769_45269799	0.700267	GLI3	ENST00000548826.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr1_-_45308616_45308735	0.699251	GLI3	ENST00000447098.2|PTCH2|ENSG00000117425.9|patched 2 	ENST00000372192.3|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr16_+_57702210_57702233	0.696987	GLI3	ENST00000450388.3|GPR97|ENSG00000182885.12|G protein-coupled receptor 97
hg19_v2_chr16_-_2908155_2908178	0.686212	GLI3	ENST00000571228.1|PRSS22|ENSG00000005001.5|protease, serine, 22 	ENST00000161006.3|PRSS22|ENSG00000005001.5|protease, serine, 22
hg19_v2_chr2_-_85636928_85636955	0.685527	GLI3	ENST00000449030.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr20_+_55204351_55204377	0.685489	GLI3	ENST00000201031.2|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr1_+_43735646_43735665	0.683221	GLI3	ENST00000439858.1|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr17_-_79620721_79620767	0.681893	GLI3	ENST00000571004.1|PDE6G|ENSG00000185527.7|phosphodiesterase 6G, cGMP-specific, rod, gamma
hg19_v2_chr12_-_52845910_52845938	0.680641	GLI3	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr3_-_119278376_119278403	0.678398	GLI3	ENST00000478182.1|CD80|ENSG00000121594.7|CD80 molecule
hg19_v2_chr1_-_104238912_104238912	0.678181	GLI3	ENST00000330330.5|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr18_-_21562500_21562520	0.676883	GLI3	ENST00000582300.2|RP11-403A21.1|ENSG00000265752.2|RP11-403A21.1
hg19_v2_chr1_-_45253377_45253377	0.671088	GLI3	ENST00000372207.3|BEST4|ENSG00000142959.4|bestrophin 4
hg19_v2_chr20_+_31407692_31407709	0.669699	GLI3	ENST00000375571.5|MAPRE1|ENSG00000101367.8|microtubule-associated protein, RP/EB family, member 1
hg19_v2_chr22_+_50528308_50528439	0.667999	GLI3	ENST00000545383.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000262794.5|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr5_-_28809356_28809397	0.666548	GLI3	ENST00000504398.1|CTD-2134P3.1|ENSG00000250453.1|CTD-2134P3.1
hg19_v2_chr11_-_627143_627187	0.664894	GLI3	ENST00000176195.3|SCT|ENSG00000070031.3|secretin
hg19_v2_chr1_+_209941827_209941837	0.660245	GLI3	ENST00000367023.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr18_+_21594384_21594539	0.65806	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.8|tetratricopeptide repeat domain 39C
hg19_v2_chr16_-_67517716_67517716	0.657217	GLI3	ENST00000290953.2|AGRP|ENSG00000159723.4|agouti related protein homolog (mouse)
hg19_v2_chr21_-_46330545_46330741	0.656676	GLI3	ENST00000320216.6|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397852.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr1_+_43735678_43735696	0.655526	GLI3	ENST00000432792.2|TMEM125|ENSG00000179178.6|transmembrane protein 125
hg19_v2_chr22_-_50970919_50971009	0.652781	GLI3	ENST00000329363.4|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000437588.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr14_-_106586656_106586668	0.645828	GLI3	ENST00000390602.2|IGHV3-13|ENSG00000211942.2|immunoglobulin heavy variable 3-13
hg19_v2_chr2_-_89266286_89266286	0.644997	GLI3	ENST00000464162.1|IGKV1-6|ENSG00000239855.1|immunoglobulin kappa variable 1-6
hg19_v2_chr22_+_22707260_22707289	0.638538	GLI3	ENST00000390293.1|IGLV5-48|ENSG00000211647.1|immunoglobulin lambda variable 5-48 (non-functional)
hg19_v2_chr1_-_160681593_160681641	0.634309	GLI3	ENST00000368045.3|CD48|ENSG00000117091.5|CD48 molecule 	ENST00000368046.3|CD48|ENSG00000117091.5|CD48 molecule
hg19_v2_chr8_-_6795823_6795860	0.632116	GLI3	ENST00000297435.2|DEFA4|ENSG00000164821.4|defensin, alpha 4, corticostatin
hg19_v2_chr9_-_34381536_34381602	0.630851	GLI3	ENST00000379126.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379127.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24 	ENST00000379133.3|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr7_-_155089251_155089375	0.629895	GLI3	ENST00000609974.1|AC144652.1|ENSG00000273117.1|AC144652.1
hg19_v2_chr19_+_39904168_39904468	0.628424	GLI3	ENST00000438123.1|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000409797.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2 	ENST00000451354.2|PLEKHG2|ENSG00000090924.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
hg19_v2_chr16_-_22385901_22385947	0.623158	GLI3	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr22_+_38035623_38035712	0.621643	GLI3	ENST00000336738.5|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1 	ENST00000442465.2|SH3BP1|ENSG00000100092.16|SH3-domain binding protein 1
hg19_v2_chr9_+_139863695_139863841	0.62096	GLI3	ENST00000371629.1|C9orf141|ENSG00000198454.2|chromosome 9 open reading frame 141
hg19_v2_chr17_+_27071002_27071103	0.619153	GLI3	ENST00000262395.5|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000422344.1|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000444415.3|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4 	ENST00000262396.6|TRAF4|ENSG00000076604.10|TNF receptor-associated factor 4
hg19_v2_chr12_+_51785057_51785105	0.618061	GLI3	ENST00000535225.2|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr22_+_46692638_46692690	0.613387	GLI3	ENST00000454366.1|GTSE1|ENSG00000075218.14|G-2 and S-phase expressed 1
hg19_v2_chrX_-_153775426_153775469	0.613188	GLI3	ENST00000393562.2|G6PD|ENSG00000160211.11|glucose-6-phosphate dehydrogenase
hg19_v2_chr19_-_46318486_46318531	0.60751	GLI3	ENST00000597055.1|RSPH6A|ENSG00000104941.3|radial spoke head 6 homolog A (Chlamydomonas)
hg19_v2_chr3_-_16554403_16554429	0.603316	GLI3	ENST00000449415.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1 	ENST00000441460.1|RFTN1|ENSG00000131378.9|raftlin, lipid raft linker 1
hg19_v2_chr22_+_50528459_50528516	0.603071	GLI3	ENST00000395858.3|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse) 	ENST00000395843.1|MOV10L1|ENSG00000073146.11|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)
hg19_v2_chr16_-_1968231_1968441	0.602065	GLI3	ENST00000443547.1|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6 	ENST00000293937.3|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6 	ENST00000454677.2|HS3ST6|ENSG00000162040.5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6
hg19_v2_chr2_-_201936302_201936416	0.601463	GLI3	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr1_+_44399347_44399444	0.601405	GLI3	ENST00000477048.1|ARTN|ENSG00000117407.12|artemin 	ENST00000471394.2|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr14_+_105559784_105559946	0.601011	GLI3	ENST00000548104.1|RP11-44N21.1|ENSG00000257556.1|RP11-44N21.1
hg19_v2_chr17_+_7253635_7253642	0.599787	GLI3	ENST00000571471.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
hg19_v2_chrX_-_45629661_45629677	0.599767	GLI3	ENST00000602507.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2	ENST00000602461.1|RP6-99M1.2|ENSG00000270069.1|RP6-99M1.2
hg19_v2_chr16_+_28996416_28996444	0.59815	GLI3	ENST00000395456.2|LAT|ENSG00000213658.6|linker for activation of T cells 	ENST00000454369.2|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr8_+_103563792_103563808	0.597945	GLI3	ENST00000285402.3|ODF1|ENSG00000155087.3|outer dense fiber of sperm tails 1
hg19_v2_chr9_-_139891165_139891255	0.596933	GLI3	ENST00000494426.1|CLIC3|ENSG00000169583.12|chloride intracellular channel 3
hg19_v2_chr14_+_102027688_102027833	0.596	GLI3	ENST00000510508.4|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III 	ENST00000359323.3|DIO3|ENSG00000197406.6|deiodinase, iodothyronine, type III
hg19_v2_chr1_+_156123359_156123398	0.590899	GLI3	ENST00000368284.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000368286.2|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENST00000438830.1|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr19_+_18283959_18283993	0.59077	GLI3	ENST00000597802.2|IFI30|ENSG00000216490.3|interferon, gamma-inducible protein 30
hg19_v2_chr16_+_30194916_30194955	0.590217	GLI3	ENST00000570045.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000565497.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A 	ENST00000570244.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr19_-_51522955_51523020	0.589087	GLI3	ENST00000358789.3|KLK10|ENSG00000129451.7|kallikrein-related peptidase 10
hg19_v2_chr6_-_46703092_46703156	0.588905	GLI3	ENST00000541026.1|PLA2G7|ENSG00000146070.12|phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)
hg19_v2_chr21_+_36041688_36041688	0.586089	GLI3	ENST00000360731.3|CLIC6|ENSG00000159212.8|chloride intracellular channel 6 	ENST00000349499.2|CLIC6|ENSG00000159212.8|chloride intracellular channel 6
hg19_v2_chr16_+_1306060_1306088	0.584681	GLI3	ENST00000397534.2|TPSD1|ENSG00000095917.9|tryptase delta 1
hg19_v2_chr4_-_176733377_176733424	0.582996	GLI3	ENST00000505375.1|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr5_-_137090028_137090075	0.57883	GLI3	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr16_+_22524379_22524379	0.577166	GLI3	ENST00000536620.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr1_-_63782888_63782904	0.574179	GLI3	ENST00000436475.2|LINC00466|ENSG00000224209.2|long intergenic non-protein coding RNA 466
hg19_v2_chr1_+_156123318_156123358	0.573914	GLI3	ENST00000368285.3|SEMA4A|ENSG00000196189.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
hg19_v2_chr19_-_19754404_19754478	0.57293	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000445806.2|GMIP|ENSG00000089639.6|GEM interacting protein 	ENST00000203556.4|GMIP|ENSG00000089639.6|GEM interacting protein
hg19_v2_chr10_-_116164239_116164268	0.572559	GLI3	ENST00000419268.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000304129.4|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2 	ENST00000545353.1|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr11_-_65640325_65640377	0.57187	GLI3	ENST00000307998.6|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr6_-_170151603_170151713	0.571766	GLI3	ENST00000366774.3|TCTE3|ENSG00000184786.4|t-complex-associated-testis-expressed 3
hg19_v2_chr20_+_3776371_3776506	0.571705	GLI3	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr5_-_138842286_138842336	0.571382	GLI3	ENST00000515823.1|ECSCR|ENSG00000249751.1|endothelial cell surface expressed chemotaxis and apoptosis regulator
hg19_v2_chr19_-_2256405_2256428	0.570676	GLI3	ENST00000300961.6|JSRP1|ENSG00000167476.6|junctional sarcoplasmic reticulum protein 1
hg19_v2_chr14_+_78870030_78870098	0.56822	GLI3	ENST00000553631.1|NRXN3|ENSG00000021645.13|neurexin 3 	ENST00000554719.1|NRXN3|ENSG00000021645.13|neurexin 3
hg19_v2_chr4_-_122148620_122148647	0.567704	GLI3	ENST00000509841.1|TNIP3|ENSG00000050730.11|TNFAIP3 interacting protein 3
hg19_v2_chr3_-_72150076_72150225	0.564871	GLI3	ENST00000488545.1|LINC00877|ENSG00000241163.3|long intergenic non-protein coding RNA 877 	ENST00000608654.1|LINC00877|ENSG00000241163.3|long intergenic non-protein coding RNA 877
hg19_v2_chr4_-_177713788_177713881	0.564176	GLI3	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr2_+_228736335_228736397	0.563438	GLI3	ENST00000440997.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1 	ENST00000545118.1|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr7_+_104581389_104581653	0.562641	GLI3	ENST00000415513.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2	ENST00000417026.1|RP11-325F22.2|ENSG00000237513.1|RP11-325F22.2
hg19_v2_chrX_+_149531606_149531686	0.560476	GLI3	ENST00000432680.2|MAMLD1|ENSG00000013619.9|mastermind-like domain containing 1
hg19_v2_chr6_+_27356745_27356777	0.559518	GLI3	ENST00000461521.1|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chr16_+_30194293_30194308	0.558864	GLI3	ENST00000561815.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chrX_+_115567767_115567790	0.557715	GLI3	ENST00000371900.4|SLC6A14|ENSG00000087916.7|solute carrier family 6 (amino acid transporter), member 14
hg19_v2_chr3_-_119278446_119278477	0.557416	GLI3	ENST00000264246.3|CD80|ENSG00000121594.7|CD80 molecule
hg19_v2_chr8_-_122653630_122653661	0.5563	GLI3	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr1_+_1115056_1115079	0.556089	GLI3	ENST00000379288.3|TTLL10|ENSG00000162571.9|tubulin tyrosine ligase-like family, member 10
hg19_v2_chr7_+_2443202_2443260	0.553158	GLI3	ENST00000258711.6|CHST12|ENSG00000136213.7|carbohydrate (chondroitin 4) sulfotransferase 12
hg19_v2_chr17_+_31255165_31255228	0.550971	GLI3	ENST00000578289.1|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000439138.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr7_-_4923259_4923310	0.550738	GLI3	ENST00000536091.1|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr1_-_2564450_2564481	0.550708	GLI3	ENST00000288709.6|MMEL1|ENSG00000142606.11|membrane metallo-endopeptidase-like 1
hg19_v2_chr3_+_10068095_10068183	0.549141	GLI3	ENST00000287647.3|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383807.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000383806.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2 	ENST00000419585.1|FANCD2|ENSG00000144554.6|Fanconi anemia, complementation group D2
hg19_v2_chr1_+_209941942_209941964	0.548856	GLI3	ENST00000487271.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3 	ENST00000477431.1|TRAF3IP3|ENSG00000009790.10|TRAF3 interacting protein 3
hg19_v2_chr17_+_6899366_6899384	0.548167	GLI3	ENST00000251535.6|ALOX12|ENSG00000108839.7|arachidonate 12-lipoxygenase
hg19_v2_chr1_+_44457441_44457514	0.54688	GLI3	ENST00000466180.1|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr7_-_41742697_41742714	0.546543	GLI3	ENST00000242208.4|INHBA|ENSG00000122641.9|inhibin, beta A
hg19_v2_chr8_-_145980808_145980922	0.546357	GLI3	ENST00000525191.1|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr12_+_6881678_6881707	0.545711	GLI3	ENST00000441671.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3 	ENST00000203629.2|LAG3|ENSG00000089692.4|lymphocyte-activation gene 3
hg19_v2_chr19_+_55385682_55385717	0.543775	GLI3	ENST00000391726.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr1_-_209741018_209741127	0.543181	GLI3	ENST00000424696.2|RP1-272L16.1|ENSG00000224260.2|RP1-272L16.1
hg19_v2_chr17_+_18647326_18647388	0.541778	GLI3	ENST00000395667.1|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000395665.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000308799.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10 	ENST00000301938.4|FBXW10|ENSG00000171931.8|F-box and WD repeat domain containing 10
hg19_v2_chr20_+_3776936_3776964	0.538148	GLI3	ENST00000439880.2|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr19_+_36208877_36208921	0.538046	GLI3	ENST00000420124.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000222270.7|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B  	ENST00000341701.1|KMT2B|ENSG00000272333.1|Histone-lysine N-methyltransferase 2B
hg19_v2_chrX_+_12809463_12809607	0.537324	GLI3	ENST00000380663.3|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000380668.5|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000398491.2|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2 	ENST00000489404.1|PRPS2|ENSG00000101911.8|phosphoribosyl pyrophosphate synthetase 2
hg19_v2_chr7_-_108096765_108096784	0.536865	GLI3	ENST00000379024.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000351718.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr16_-_68269971_68270059	0.536192	GLI3	ENST00000565858.1|ESRP2|ENSG00000103067.7|epithelial splicing regulatory protein 2
hg19_v2_chr16_+_30194118_30194165	0.535282	GLI3	ENST00000563778.1|CORO1A|ENSG00000102879.11|coronin, actin binding protein, 1A
hg19_v2_chr20_+_35974532_35974557	0.534232	GLI3	ENST00000373578.2|SRC|ENSG00000197122.7|v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
hg19_v2_chrX_+_149531524_149531572	0.533042	GLI3	ENST00000370401.2|MAMLD1|ENSG00000013619.9|mastermind-like domain containing 1
hg19_v2_chr4_-_5894777_5894799	0.531496	GLI3	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr17_-_38574169_38574202	0.530809	GLI3	ENST00000423485.1|TOP2A|ENSG00000131747.10|topoisomerase (DNA) II alpha 170kDa
hg19_v2_chr7_-_4923315_4923360	0.530614	GLI3	ENST00000399583.3|RADIL|ENSG00000157927.12|Ras association and DIL domains
hg19_v2_chr17_-_26127525_26127556	0.52895	GLI3	ENST00000313735.6|NOS2|ENSG00000007171.12|nitric oxide synthase 2, inducible
hg19_v2_chr1_-_153433120_153433177	0.528496	GLI3	ENST00000368723.3|S100A7|ENSG00000143556.4|S100 calcium binding protein A7
hg19_v2_chr1_+_44399466_44399518	0.527276	GLI3	ENST00000498139.2|ARTN|ENSG00000117407.12|artemin 	ENST00000491846.1|ARTN|ENSG00000117407.12|artemin
hg19_v2_chr11_+_111412053_111412082	0.526874	GLI3	ENST00000530962.1|LAYN|ENSG00000204381.7|layilin
hg19_v2_chr1_-_26697236_26697258	0.526181	GLI3	ENST00000451801.1|ZNF683|ENSG00000176083.13|zinc finger protein 683 	ENST00000454975.1|ZNF683|ENSG00000176083.13|zinc finger protein 683
hg19_v2_chr1_+_104198377_104198377	0.523117	GLI3	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr22_-_23922448_23922495	0.523056	GLI3	ENST00000438703.1|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1 	ENST00000330377.2|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr11_+_60739249_60739338	0.521679	GLI3	ENST00000542157.1|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000433107.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000452451.2|CD6|ENSG00000013725.10|CD6 molecule 	ENST00000352009.5|CD6|ENSG00000013725.10|CD6 molecule
hg19_v2_chr17_+_4710391_4710500	0.520763	GLI3	ENST00000263088.6|PLD2|ENSG00000129219.9|phospholipase D2 	ENST00000572940.1|PLD2|ENSG00000129219.9|phospholipase D2
hg19_v2_chr16_-_11681023_11681145	0.520405	GLI3	ENST00000570904.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000574701.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr4_+_40194570_40194608	0.518237	GLI3	ENST00000507851.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr19_-_47922750_47922795	0.517211	GLI3	ENST00000331559.5|MEIS3|ENSG00000105419.13|Meis homeobox 3
hg19_v2_chr5_-_54281407_54281429	0.516765	GLI3	ENST00000381403.4|ESM1|ENSG00000164283.8|endothelial cell-specific molecule 1
hg19_v2_chr1_-_212873267_212873332	0.516653	GLI3	ENST00000243440.1|BATF3|ENSG00000123685.4|basic leucine zipper transcription factor, ATF-like 3
hg19_v2_chr1_-_26233423_26233482	0.513645	GLI3	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr11_-_68780824_68780877	0.51203	GLI3	ENST00000441623.1|MRGPRF|ENSG00000172935.8|MAS-related GPR, member F 	ENST00000309099.6|MRGPRF|ENSG00000172935.8|MAS-related GPR, member F
hg19_v2_chr7_-_131241361_131241398	0.511827	GLI3	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr16_-_88717423_88717469	0.510266	GLI3	ENST00000568278.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000569359.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide 	ENST00000567174.1|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr9_-_34381511_34381529	0.50987	GLI3	ENST00000379124.1|C9orf24|ENSG00000164972.8|chromosome 9 open reading frame 24
hg19_v2_chr19_+_49999631_49999711	0.508475	GLI3	ENST00000270625.2|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000596873.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000594493.1|RPS11|ENSG00000142534.2|ribosomal protein S11 	ENST00000599561.1|RPS11|ENSG00000142534.2|ribosomal protein S11
hg19_v2_chr17_+_7788104_7788138	0.50824	GLI3	ENST00000380358.4|CHD3|ENSG00000170004.12|chromodomain helicase DNA binding protein 3
hg19_v2_chr11_-_119187826_119187847	0.50813	GLI3	ENST00000264036.4|MCAM|ENSG00000076706.10|melanoma cell adhesion molecule
hg19_v2_chr12_-_57882577_57882614	0.507822	GLI3	ENST00000393797.2|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr7_-_45026159_45026188	0.507627	GLI3	ENST00000584327.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000438705.3|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr7_-_151107106_151107129	0.504337	GLI3	ENST00000334493.6|WDR86|ENSG00000187260.11|WD repeat domain 86
hg19_v2_chr16_-_88717482_88717560	0.503545	GLI3	ENST00000261623.3|CYBA|ENSG00000051523.6|cytochrome b-245, alpha polypeptide
hg19_v2_chr19_+_35606692_35606769	0.502971	GLI3	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr6_+_52285131_52285182	0.50241	GLI3	ENST00000433625.2|EFHC1|ENSG00000096093.10|EF-hand domain (C-terminal) containing 1
hg19_v2_chr7_-_45026200_45026273	0.502353	GLI3	ENST00000577700.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000580458.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000579383.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000584686.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000585030.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding) 	ENST00000582727.1|SNHG15|ENSG00000232956.4|small nucleolar RNA host gene 15 (non-protein coding)
hg19_v2_chr13_+_115047097_115047120	0.502344	GLI3	ENST00000351487.5|UPF3A|ENSG00000169062.10|UPF3 regulator of nonsense transcripts homolog A (yeast)
hg19_v2_chr3_+_32993065_32993074	0.501247	GLI3	ENST00000330953.5|CCR4|ENSG00000183813.6|chemokine (C-C motif) receptor 4
hg19_v2_chr16_-_11681316_11681419	0.49955	GLI3	ENST00000571688.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chrX_-_52260355_52260363	0.49932	GLI3	ENST00000375602.1|XAGE1A|ENSG00000204379.6|X antigen family, member 1A 	ENST00000399800.3|XAGE1A|ENSG00000204379.6|X antigen family, member 1A
hg19_v2_chr1_+_104197912_104197912	0.498669	GLI3	ENST00000430659.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr12_+_7055767_7055804	0.494335	GLI3	ENST00000447931.2|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr1_+_152956549_152956566	0.493208	GLI3	ENST00000307122.2|SPRR1A|ENSG00000169474.3|small proline-rich protein 1A
hg19_v2_chr7_+_5919458_5919458	0.492696	GLI3	ENST00000416608.1|OCM|ENSG00000122543.6|oncomodulin
hg19_v2_chr6_+_31674639_31674681	0.492638	GLI3	ENST00000556581.1|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000375832.4|LY6G6F|ENSG00000204424.8|lymphocyte antigen 6 complex, locus G6F 	ENST00000503322.1|MEGT1|ENSG00000250641.1|HCG43720, isoform CRA_a; Lymphocyte antigen 6 complex locus protein G6f; Megakaryocyte-enhanced gene transcript 1 protein; Uncharacterized protein
hg19_v2_chr2_-_74648702_74648782	0.49245	GLI3	ENST00000518863.1|C2orf81|ENSG00000159239.7|chromosome 2 open reading frame 81
hg19_v2_chr10_+_46997926_46997926	0.492394	GLI3	ENST00000374314.4|GPRIN2|ENSG00000204175.4|G protein regulated inducer of neurite outgrowth 2
hg19_v2_chr7_-_142240014_142240063	0.491874	GLI3	ENST00000390363.2|TRBV9|ENSG00000211716.2|T cell receptor beta variable 9
hg19_v2_chr11_+_46403194_46403242	0.491371	GLI3	ENST00000395569.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2) 	ENST00000395566.4|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr1_+_160765884_160765903	0.490978	GLI3	ENST00000392203.4|LY9|ENSG00000122224.13|lymphocyte antigen 9
hg19_v2_chr20_+_48599506_48599536	0.489344	GLI3	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr22_-_23922410_23922446	0.489011	GLI3	ENST00000249053.3|IGLL1|ENSG00000128322.6|immunoglobulin lambda-like polypeptide 1
hg19_v2_chr22_+_39353527_39353623	0.4886	GLI3	ENST00000249116.2|APOBEC3A|ENSG00000128383.8|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A
hg19_v2_chr5_+_176513868_176513893	0.488591	GLI3	ENST00000292408.4|FGFR4|ENSG00000160867.10|fibroblast growth factor receptor 4
hg19_v2_chr12_-_57882498_57882509	0.488587	GLI3	ENST00000550288.1|ARHGAP9|ENSG00000123329.13|Rho GTPase activating protein 9
hg19_v2_chr21_-_18985230_18985265	0.488041	GLI3	ENST00000457956.1|BTG3|ENSG00000154640.10|BTG family, member 3 	ENST00000348354.6|BTG3|ENSG00000154640.10|BTG family, member 3
hg19_v2_chr7_-_128045984_128046026	0.485905	GLI3	ENST00000470772.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000480861.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1 	ENST00000496200.1|IMPDH1|ENSG00000106348.12|IMP (inosine 5'-monophosphate) dehydrogenase 1
hg19_v2_chr8_+_98900132_98900205	0.483725	GLI3	ENST00000520016.1|MATN2|ENSG00000132561.9|matrilin 2
hg19_v2_chr19_-_54804173_54804302	0.482002	GLI3	ENST00000391744.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 	ENST00000251390.3|LILRA3|ENSG00000170866.7|leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3
hg19_v2_chr1_+_113263199_113263199	0.481571	GLI3	ENST00000361886.3|FAM19A3|ENSG00000184599.9|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3
hg19_v2_chr11_+_1892102_1892126	0.480479	GLI3	ENST00000417766.1|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr7_+_130126012_130126069	0.479399	GLI3	ENST00000341441.5|MEST|ENSG00000106484.10|mesoderm specific transcript
hg19_v2_chr16_+_67381289_67381306	0.478587	GLI3	ENST00000435835.3|LRRC36|ENSG00000159708.13|leucine rich repeat containing 36
hg19_v2_chr1_-_2564423_2564437	0.478444	GLI3	ENST00000378412.3|MMEL1|ENSG00000142606.11|membrane metallo-endopeptidase-like 1
hg19_v2_chr7_+_142494672_142494705	0.476666	GLI3	ENST00000390416.1|TRBJ2-4|ENSG00000211768.1|T cell receptor beta joining 2-4
hg19_v2_chr10_-_90712520_90712536	0.475524	GLI3	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr9_+_6758024_6758100	0.475237	GLI3	ENST00000442236.2|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr19_+_7733929_7733950	0.474928	GLI3	ENST00000221515.2|RETN|ENSG00000104918.4|resistin
hg19_v2_chr17_-_55822653_55822673	0.474483	GLI3	ENST00000299415.2|AC007431.1|ENSG00000166329.2|coiled-coil domain containing 182
hg19_v2_chr19_+_17638059_17638113	0.474366	GLI3	ENST00000599164.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000449408.2|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000600871.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C 	ENST00000599124.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C
hg19_v2_chr20_-_18447667_18447829	0.474237	GLI3	ENST00000262547.5|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1 	ENST00000329494.5|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1 	ENST00000357236.4|DZANK1|ENSG00000089091.12|double zinc ribbon and ankyrin repeat domains 1
hg19_v2_chr16_+_31044812_31044931	0.474222	GLI3	ENST00000313843.3|STX4|ENSG00000103496.10|syntaxin 4
hg19_v2_chr13_-_46756351_46756459	0.474168	GLI3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr2_+_26915584_26915634	0.474102	GLI3	ENST00000302909.3|KCNK3|ENSG00000171303.5|potassium channel, subfamily K, member 3
hg19_v2_chr15_+_75498355_75498390	0.473883	GLI3	ENST00000567617.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr19_+_708910_708975	0.473453	GLI3	ENST00000264560.7|PALM|ENSG00000099864.13|paralemmin
hg19_v2_chr17_+_18996287_18996287	0.471459	GLI3	ENST00000399091.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000443876.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042  	ENST00000428928.1|AC007952.5|ENSG00000228157.2|Uncharacterized protein ENSP00000382042
hg19_v2_chr1_+_26872324_26872362	0.471342	GLI3	ENST00000531382.1|RPS6KA1|ENSG00000117676.9|ribosomal protein S6 kinase, 90kDa, polypeptide 1
hg19_v2_chr2_-_224702201_224702256	0.471054	GLI3	ENST00000446015.2|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr9_+_87285539_87285575	0.470999	GLI3	ENST00000359847.3|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr13_+_115047053_115047095	0.470552	GLI3	ENST00000375299.3|UPF3A|ENSG00000169062.10|UPF3 regulator of nonsense transcripts homolog A (yeast)
hg19_v2_chr19_+_45418067_45418126	0.46914	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000586638.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr11_+_1889880_1889903	0.468072	GLI3	ENST00000405957.2|LSP1|ENSG00000130592.9|lymphocyte-specific protein 1
hg19_v2_chr17_-_79481666_79481785	0.467967	GLI3	ENST00000575659.1|ACTG1|ENSG00000184009.5|actin, gamma 1
hg19_v2_chr13_-_60737898_60737910	0.465972	GLI3	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr19_+_3721719_3721744	0.465412	GLI3	ENST00000589378.1|TJP3|ENSG00000105289.10|tight junction protein 3 	ENST00000382008.3|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr3_+_195384929_195384964	0.46491	GLI3	ENST00000457233.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539252.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000452844.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000429897.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000539717.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000453324.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000445430.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000414625.2|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969 	ENST00000425425.1|LINC00969|ENSG00000242086.4|long intergenic non-protein coding RNA 969
hg19_v2_chr16_+_89979826_89979826	0.46434	GLI3	ENST00000555427.1|MC1R|ENSG00000258839.2|melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
hg19_v2_chr7_-_2883650_2883775	0.46289	GLI3	ENST00000544127.1|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr16_-_4466622_4466665	0.462772	GLI3	ENST00000570645.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000574025.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000572898.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000537233.2|CORO7|ENSG00000262246.1|coronin 7 	ENST00000571059.1|CORO7|ENSG00000262246.1|coronin 7 	ENST00000251166.4|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr9_-_123676827_123676865	0.459835	GLI3	ENST00000546084.1|TRAF1|ENSG00000056558.6|TNF receptor-associated factor 1
hg19_v2_chr1_+_233463507_233463520	0.458195	GLI3	ENST00000366623.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4  	ENST00000366624.3|MLK4|ENSG00000143674.6|Mitogen-activated protein kinase kinase kinase MLK4
hg19_v2_chr1_-_104239302_104239302	0.457644	GLI3	ENST00000446703.1|AMY1B|ENSG00000174876.12|amylase, alpha 1B (salivary)
hg19_v2_chr12_-_49259643_49259681	0.456206	GLI3	ENST00000309739.5|RND1|ENSG00000172602.5|Rho family GTPase 1
hg19_v2_chrX_-_52736211_52736239	0.455795	GLI3	ENST00000336777.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2 	ENST00000337502.5|SSX2|ENSG00000241476.3|synovial sarcoma, X breakpoint 2
hg19_v2_chr19_+_55385731_55385746	0.455014	GLI3	ENST00000469767.1|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000355524.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391725.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000345937.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000353758.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000359272.4|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391723.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for 	ENST00000391724.3|FCAR|ENSG00000186431.14|Fc fragment of IgA, receptor for
hg19_v2_chr16_+_77233294_77233341	0.454722	GLI3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr16_+_27279526_27279526	0.454443	GLI3	ENST00000566854.1|CTD-3203P2.2|ENSG00000245888.2|HCG1815999; Uncharacterized protein
hg19_v2_chr17_-_3867585_3867748	0.454362	GLI3	ENST00000359983.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000352011.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397043.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397041.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397035.3|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000397039.1|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous 	ENST00000309890.7|ATP2A3|ENSG00000074370.13|ATPase, Ca++ transporting, ubiquitous
hg19_v2_chr3_+_38035610_38035687	0.453649	GLI3	ENST00000465644.1|VILL|ENSG00000136059.10|villin-like
hg19_v2_chr19_-_13947099_13947104	0.452716	GLI3	ENST00000587762.1|MIR24-2|ENSG00000267519.2|microRNA 24-2
hg19_v2_chr3_-_72496035_72496069	0.4514	GLI3	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr1_-_32264250_32264354	0.449139	GLI3	ENST00000528579.1|SPOCD1|ENSG00000134668.8|SPOC domain containing 1
hg19_v2_chr16_+_28996364_28996381	0.449123	GLI3	ENST00000564277.1|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr14_-_61124977_61125037	0.449099	GLI3	ENST00000554986.1|SIX1|ENSG00000126778.7|SIX homeobox 1
hg19_v2_chr3_-_59035673_59035810	0.448571	GLI3	ENST00000491845.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000472469.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000471288.1|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67 	ENST00000295966.7|C3orf67|ENSG00000163689.14|chromosome 3 open reading frame 67
hg19_v2_chr16_+_3115611_3115813	0.448419	GLI3	ENST00000530890.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000444393.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000533097.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000008180.9|IL32|ENSG00000008517.12|interleukin 32 	ENST00000396890.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525228.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548652.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000525377.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000530538.2|IL32|ENSG00000008517.12|interleukin 32 	ENST00000549213.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552936.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548476.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552664.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000552356.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000551513.1|IL32|ENSG00000008517.12|interleukin 32 	ENST00000382213.3|IL32|ENSG00000008517.12|interleukin 32 	ENST00000548246.1|IL32|ENSG00000008517.12|interleukin 32
hg19_v2_chr11_-_104817919_104817919	0.448397	GLI3	ENST00000533252.1|CASP4|ENSG00000196954.8|caspase 4, apoptosis-related cysteine peptidase
hg19_v2_chr5_+_76506706_76506787	0.447997	GLI3	ENST00000340978.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000346042.3|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000264917.5|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000342343.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B 	ENST00000333194.4|PDE8B|ENSG00000113231.9|phosphodiesterase 8B
hg19_v2_chr1_+_44457261_44457280	0.447646	GLI3	ENST00000372318.3|CCDC24|ENSG00000159214.8|coiled-coil domain containing 24
hg19_v2_chr17_+_10600894_10600974	0.447068	GLI3	ENST00000379774.4|ADPRM|ENSG00000170222.11|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent
hg19_v2_chr18_+_30349623_30349758	0.446881	GLI3	ENST00000426194.1|AC012123.1|ENSG00000228835.1|Uncharacterized protein
hg19_v2_chr1_-_36945097_36945097	0.446419	GLI3	ENST00000331941.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000418048.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000338937.5|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte) 	ENST00000440588.2|CSF3R|ENSG00000119535.13|colony stimulating factor 3 receptor (granulocyte)
hg19_v2_chr19_+_45417921_45417970	0.445366	GLI3	ENST00000252491.4|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000592885.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000589781.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr3_-_128840604_128840993	0.441145	GLI3	ENST00000476465.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000315150.5|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393304.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393308.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393307.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family 	ENST00000393305.1|RAB43|ENSG00000172780.12|RAB43, member RAS oncogene family
hg19_v2_chr4_-_1107306_1107369	0.439819	GLI3	ENST00000433731.2|RNF212|ENSG00000178222.8|ring finger protein 212 	ENST00000333673.5|RNF212|ENSG00000178222.8|ring finger protein 212 	ENST00000382968.5|RNF212|ENSG00000178222.8|ring finger protein 212
hg19_v2_chr17_-_80059726_80059809	0.43784	GLI3	ENST00000583053.1|CCDC57|ENSG00000176155.14|coiled-coil domain containing 57
hg19_v2_chr22_+_51176624_51176663	0.437752	GLI3	ENST00000216139.5|ACR|ENSG00000100312.6|acrosin 	ENST00000529621.1|ACR|ENSG00000100312.6|acrosin
hg19_v2_chr6_-_2903514_2903552	0.437589	GLI3	ENST00000380698.4|SERPINB9|ENSG00000170542.5|serpin peptidase inhibitor, clade B (ovalbumin), member 9
hg19_v2_chr6_+_163148973_163149044	0.437525	GLI3	ENST00000366888.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr19_+_3708376_3708501	0.435284	GLI3	ENST00000539908.2|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr2_-_264772_264829	0.434613	GLI3	ENST00000403658.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000402632.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000415368.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1 	ENST00000454318.1|SH3YL1|ENSG00000035115.17|SH3 and SYLF domain containing 1
hg19_v2_chr6_-_29600559_29600690	0.43392	GLI3	ENST00000476670.1|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr12_+_119772502_119772522	0.433849	GLI3	ENST00000536742.1|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60 	ENST00000327554.2|CCDC60|ENSG00000183273.2|coiled-coil domain containing 60
hg19_v2_chr16_+_28857957_28857969	0.433456	GLI3	ENST00000567536.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr7_-_75005425_75005425	0.432905	GLI3	ENST00000594196.1|AC006014.1|ENSG00000268891.1|Uncharacterized protein
hg19_v2_chr12_+_130646999_130647019	0.431775	GLI3	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr22_-_46373004_46373016	0.43103	GLI3	ENST00000339464.4|WNT7B|ENSG00000188064.5|wingless-type MMTV integration site family, member 7B
hg19_v2_chr16_+_27325202_27325313	0.430329	GLI3	ENST00000395762.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000562142.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000561742.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000543915.2|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000449195.1|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000380922.3|IL4R|ENSG00000077238.9|interleukin 4 receptor 	ENST00000563002.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr5_+_149340282_149340336	0.429543	GLI3	ENST00000286298.4|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr15_+_74287118_74287144	0.428217	GLI3	ENST00000563500.1|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr19_+_39897453_39897498	0.427414	GLI3	ENST00000597629.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000248673.3|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594045.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein 	ENST00000594442.1|ZFP36|ENSG00000128016.4|ZFP36 ring finger protein
hg19_v2_chr1_+_36396313_36396356	0.427342	GLI3	ENST00000324350.5|AGO3|ENSG00000126070.14|argonaute RISC catalytic component 3
hg19_v2_chrX_+_52511761_52511769	0.427052	GLI3	ENST00000399795.3|XAGE1C|ENSG00000183461.12|X antigen family, member 1C 	ENST00000375589.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr17_-_72348271_72348271	0.426762	GLI3	ENST00000599136.1|AC103809.2|ENSG00000268626.1|Uncharacterized protein; cDNA FLJ33592 fis, clone BRAMY2012691
hg19_v2_chr1_+_45205498_45205554	0.425371	GLI3	ENST00000372218.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr6_-_109776901_109776994	0.423472	GLI3	ENST00000431946.1|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chr11_+_46402297_46402306	0.42014	GLI3	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr6_-_53213780_53213947	0.418738	GLI3	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr5_-_168727713_168727755	0.418689	GLI3	ENST00000404867.3|SLIT3|ENSG00000184347.10|slit homolog 3 (Drosophila)
hg19_v2_chr14_+_52164820_52164841	0.417817	GLI3	ENST00000554167.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr1_-_200589859_200589887	0.417671	GLI3	ENST00000367350.4|KIF14|ENSG00000118193.7|kinesin family member 14
hg19_v2_chr19_+_45417504_45417589	0.416509	GLI3	ENST00000588750.1|APOC1|ENSG00000130208.5|apolipoprotein C-I 	ENST00000588802.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr22_-_32651326_32651340	0.415318	GLI3	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr12_+_57854274_57854274	0.413553	GLI3	ENST00000528432.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chrX_-_48216101_48216142	0.412466	GLI3	ENST00000298396.2|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3 	ENST00000376893.3|SSX3|ENSG00000165584.11|synovial sarcoma, X breakpoint 3
hg19_v2_chr1_-_40254482_40254550	0.412184	GLI3	ENST00000397360.2|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b 	ENST00000372827.3|BMP8B|ENSG00000116985.6|bone morphogenetic protein 8b
hg19_v2_chr1_-_40105617_40105617	0.410774	GLI3	ENST00000372852.3|HEYL|ENSG00000163909.6|hes-related family bHLH transcription factor with YRPW motif-like
hg19_v2_chr22_+_42148515_42148527	0.410607	GLI3	ENST00000540880.1|MEI1|ENSG00000167077.8|meiosis inhibitor 1
hg19_v2_chr20_+_3777078_3777093	0.410157	GLI3	ENST00000340833.4|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr14_+_75761099_75761114	0.409662	GLI3	ENST00000561000.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5	ENST00000558575.1|RP11-293M10.5|ENSG00000259687.1|RP11-293M10.5
hg19_v2_chr7_+_76101379_76101379	0.408835	GLI3	ENST00000429179.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila)
hg19_v2_chr10_-_116164450_116164515	0.407326	GLI3	ENST00000369271.3|AFAP1L2|ENSG00000169129.10|actin filament associated protein 1-like 2
hg19_v2_chr9_+_90112590_90112611	0.406878	GLI3	ENST00000472284.1|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr16_+_27324983_27324996	0.406282	GLI3	ENST00000566117.1|IL4R|ENSG00000077238.9|interleukin 4 receptor
hg19_v2_chr18_+_21529811_21529857	0.405798	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.11|laminin, alpha 3
hg19_v2_chr5_+_140566_140681	0.405528	GLI3	ENST00000502646.1|PLEKHG4B|ENSG00000153404.9|pleckstrin homology domain containing, family G (with RhoGef domain) member 4B
hg19_v2_chr19_-_49522727_49522759	0.404539	GLI3	ENST00000600007.1|CTB-60B18.10|ENSG00000268655.1|CTB-60B18.10
hg19_v2_chr6_-_33756867_33756950	0.404357	GLI3	ENST00000293760.5|LEMD2|ENSG00000161904.7|LEM domain containing 2
hg19_v2_chr20_-_44420507_44420547	0.404294	GLI3	ENST00000243938.4|WFDC3|ENSG00000124116.14|WAP four-disulfide core domain 3
hg19_v2_chr17_+_73642315_73642344	0.403739	GLI3	ENST00000556126.2|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr22_-_42765174_42765282	0.40294	GLI3	ENST00000432473.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000412060.1|Z83851.1|ENSG00000229891.1|Z83851.1	ENST00000424852.1|Z83851.1|ENSG00000229891.1|Z83851.1
hg19_v2_chr22_-_20255212_20255212	0.402928	GLI3	ENST00000416372.1|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr22_+_31644388_31644473	0.402359	GLI3	ENST00000333611.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000340552.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr19_-_10024496_10024529	0.402175	GLI3	ENST00000593091.1|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr4_-_159593179_159593220	0.401741	GLI3	ENST00000379205.4|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr9_-_101017900_101017951	0.40156	GLI3	ENST00000375066.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr14_-_106068065_106068065	0.401541	GLI3	ENST00000390541.2|IGHE|ENSG00000211891.4|immunoglobulin heavy constant epsilon
hg19_v2_chr19_-_42758040_42758064	0.401514	GLI3	ENST00000593944.1|ERF|ENSG00000105722.5|Ets2 repressor factor
hg19_v2_chr22_-_36761081_36761157	0.4012	GLI3	ENST00000456729.1|MYH9|ENSG00000100345.16|myosin, heavy chain 9, non-muscle 	ENST00000401701.1|MYH9|ENSG00000100345.16|myosin, heavy chain 9, non-muscle
hg19_v2_chr16_+_31885079_31885165	0.400563	GLI3	ENST00000300870.10|ZNF267|ENSG00000185947.10|zinc finger protein 267 	ENST00000394846.3|ZNF267|ENSG00000185947.10|zinc finger protein 267
hg19_v2_chr11_+_124735282_124735332	0.398888	GLI3	ENST00000397801.1|ROBO3|ENSG00000154134.10|roundabout, axon guidance receptor, homolog 3 (Drosophila)
hg19_v2_chr7_+_142423143_142423173	0.397792	GLI3	ENST00000390399.3|TRBV27|ENSG00000211752.3|T cell receptor beta variable 27
hg19_v2_chr5_-_156569850_156569893	0.397501	GLI3	ENST00000524219.1|HAVCR2|ENSG00000135077.4|hepatitis A virus cellular receptor 2
hg19_v2_chr19_+_7011509_7011526	0.396584	GLI3	ENST00000377296.3|AC025278.1|ENSG00000204752.3|Uncharacterized protein
hg19_v2_chr2_-_241080069_241080082	0.396448	GLI3	ENST00000319460.1|OTOS|ENSG00000178602.3|otospiralin
hg19_v2_chr13_+_27825706_27825741	0.396407	GLI3	ENST00000272274.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000319826.4|RPL21|ENSG00000122026.6|ribosomal protein L21 	ENST00000326092.4|RPL21|ENSG00000122026.6|ribosomal protein L21
hg19_v2_chr16_-_17564738_17564834	0.396199	GLI3	ENST00000261381.6|XYLT1|ENSG00000103489.7|xylosyltransferase I
hg19_v2_chr14_-_74960030_74960050	0.395278	GLI3	ENST00000553490.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000557510.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr19_+_44085189_44085189	0.395153	GLI3	ENST00000562365.2|PINLYP|ENSG00000234465.6|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg19_v2_chr19_+_18485509_18485556	0.393672	GLI3	ENST00000597765.1|GDF15|ENSG00000130513.6|growth differentiation factor 15
hg19_v2_chr19_-_35981358_35981433	0.393552	GLI3	ENST00000484218.2|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein 	ENST00000338897.3|KRTDAP|ENSG00000188508.6|keratinocyte differentiation-associated protein
hg19_v2_chr12_-_10607084_10607284	0.393243	GLI3	ENST00000408006.3|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000544822.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1 	ENST00000536188.1|KLRC1|ENSG00000134545.9|killer cell lectin-like receptor subfamily C, member 1
hg19_v2_chr15_+_89164560_89164601	0.392365	GLI3	ENST00000379231.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease 	ENST00000559528.1|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chrX_-_115594160_115594172	0.391648	GLI3	ENST00000371894.4|CXorf61|ENSG00000204019.4|cancer/testis antigen 83
hg19_v2_chrX_+_152086373_152086414	0.39118	GLI3	ENST00000318529.8|ZNF185|ENSG00000147394.14|zinc finger protein 185 (LIM domain)
hg19_v2_chr7_-_100034060_100034188	0.389961	GLI3	ENST00000292330.2|PPP1R35|ENSG00000160813.2|protein phosphatase 1, regulatory subunit 35
hg19_v2_chr12_-_50101165_50101259	0.389597	GLI3	ENST00000352151.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000335154.5|FMNL3|ENSG00000161791.9|formin-like 3 	ENST00000293590.5|FMNL3|ENSG00000161791.9|formin-like 3
hg19_v2_chr11_-_65667884_65667895	0.388741	GLI3	ENST00000448083.2|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000531493.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1 	ENST00000532401.1|FOSL1|ENSG00000175592.4|FOS-like antigen 1
hg19_v2_chr7_+_119913688_119913728	0.38867	GLI3	ENST00000331113.4|KCND2|ENSG00000184408.5|potassium voltage-gated channel, Shal-related subfamily, member 2
hg19_v2_chr2_-_31030277_31030317	0.388331	GLI3	ENST00000534090.2|CAPN13|ENSG00000162949.12|calpain 13 	ENST00000295055.8|CAPN13|ENSG00000162949.12|calpain 13
hg19_v2_chr20_-_62258394_62258464	0.388304	GLI3	ENST00000370077.1|GMEB2|ENSG00000101216.6|glucocorticoid modulatory element binding protein 2
hg19_v2_chr12_+_7055631_7055748	0.388222	GLI3	ENST00000543115.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6 	ENST00000399448.1|PTPN6|ENSG00000111679.12|protein tyrosine phosphatase, non-receptor type 6
hg19_v2_chr16_+_28996572_28996739	0.387419	GLI3	ENST00000360872.5|LAT|ENSG00000213658.6|linker for activation of T cells 	ENST00000566177.1|LAT|ENSG00000213658.6|linker for activation of T cells 	ENST00000354453.4|LAT|ENSG00000213658.6|linker for activation of T cells
hg19_v2_chr8_-_82024290_82024310	0.386846	GLI3	ENST00000220597.4|PAG1|ENSG00000076641.4|phosphoprotein associated with glycosphingolipid microdomains 1
hg19_v2_chr19_-_41196458_41196490	0.385607	GLI3	ENST00000598779.1|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr9_+_90112741_90112761	0.385364	GLI3	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr4_-_159592996_159593059	0.384488	GLI3	ENST00000508457.1|C4orf46|ENSG00000205208.4|chromosome 4 open reading frame 46
hg19_v2_chr6_+_31465849_31465863	0.383878	GLI3	ENST00000399150.3|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr9_+_6758109_6758131	0.383588	GLI3	ENST00000536108.1|KDM4C|ENSG00000107077.13|lysine (K)-specific demethylase 4C
hg19_v2_chr3_-_10334585_10334601	0.382292	GLI3	ENST00000430179.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449238.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000437422.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000287656.7|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000457360.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000439975.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000446937.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr9_+_135285430_135285565	0.380485	GLI3	ENST00000393215.3|C9orf171|ENSG00000188523.4|chromosome 9 open reading frame 171
hg19_v2_chr9_-_101017862_101017897	0.380416	GLI3	ENST00000375064.1|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2 	ENST00000342112.5|TBC1D2|ENSG00000095383.15|TBC1 domain family, member 2
hg19_v2_chr2_+_137523086_137523120	0.379718	GLI3	ENST00000409968.1|THSD7B|ENSG00000144229.7|thrombospondin, type I, domain containing 7B
hg19_v2_chr16_-_4465886_4465906	0.379564	GLI3	ENST00000539968.1|CORO7|ENSG00000262246.1|coronin 7
hg19_v2_chr1_+_1950763_1950815	0.379414	GLI3	ENST00000378585.4|GABRD|ENSG00000187730.6|gamma-aminobutyric acid (GABA) A receptor, delta
hg19_v2_chr17_-_19651668_19651746	0.378855	GLI3	ENST00000494157.2|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1 	ENST00000225740.6|ALDH3A1|ENSG00000108602.13|aldehyde dehydrogenase 3 family, member A1
hg19_v2_chr17_+_61554413_61554434	0.377534	GLI3	ENST00000538928.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000290866.4|ACE|ENSG00000159640.10|angiotensin I converting enzyme 	ENST00000428043.1|ACE|ENSG00000159640.10|angiotensin I converting enzyme
hg19_v2_chr15_-_42343388_42343388	0.376583	GLI3	ENST00000399518.3|PLA2G4E|ENSG00000188089.9|phospholipase A2, group IVE
hg19_v2_chr12_+_113354341_113354422	0.376478	GLI3	ENST00000553152.1|OAS1|ENSG00000089127.8|2'-5'-oligoadenylate synthetase 1, 40/46kDa
hg19_v2_chr12_-_57030115_57030177	0.376156	GLI3	ENST00000379441.3|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000179765.5|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A 	ENST00000551812.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr14_-_74959994_74960020	0.374052	GLI3	ENST00000238633.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2 	ENST00000434013.2|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr22_+_31892261_31892278	0.373359	GLI3	ENST00000432498.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000540643.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000443326.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000414585.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr12_+_116985896_116985920	0.372676	GLI3	ENST00000547114.1|RP11-809C9.2|ENSG00000258102.1|RP11-809C9.2
hg19_v2_chr8_-_38008783_38008783	0.371313	GLI3	ENST00000276449.4|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr1_-_228353112_228353213	0.371223	GLI3	ENST00000366713.1|IBA57-AS1|ENSG00000203684.5|IBA57 antisense RNA 1 (head to head)
hg19_v2_chr8_-_21771182_21771208	0.369761	GLI3	ENST00000523932.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa 	ENST00000544659.1|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr1_+_19923454_19923561	0.36944	GLI3	ENST00000602662.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough 	ENST00000322753.6|MINOS1|ENSG00000173436.9|mitochondrial inner membrane organizing system 1 	ENST00000602293.1|MINOS1-NBL1|ENSG00000270136.1|MINOS1-NBL1 readthrough
hg19_v2_chr5_-_68339648_68339711	0.369022	GLI3	ENST00000479830.2|CTC-498J12.1|ENSG00000250237.1|CTC-498J12.1
hg19_v2_chr11_-_123756334_123756379	0.3681	GLI3	ENST00000528595.1|TMEM225|ENSG00000204300.2|transmembrane protein 225 	ENST00000375026.2|TMEM225|ENSG00000204300.2|transmembrane protein 225
hg19_v2_chr4_-_1657135_1657135	0.367727	GLI3	ENST00000489029.1|FAM53A|ENSG00000174137.8|family with sequence similarity 53, member A
hg19_v2_chr17_-_3819751_3819794	0.367542	GLI3	ENST00000225538.3|P2RX1|ENSG00000108405.3|purinergic receptor P2X, ligand-gated ion channel, 1
hg19_v2_chr11_-_7904464_7904511	0.366903	GLI3	ENST00000502624.2|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5	ENST00000527565.1|RP11-35J10.5|ENSG00000271758.1|RP11-35J10.5
hg19_v2_chr8_-_131028782_131028818	0.36687	GLI3	ENST00000519020.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chr1_+_154947126_154947147	0.366439	GLI3	ENST00000368439.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr16_+_86612112_86612123	0.366098	GLI3	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr1_-_1051736_1051754	0.365888	GLI3	ENST00000448924.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000294576.5|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000437760.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000462097.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000475119.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr19_-_38746979_38747050	0.364132	GLI3	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr20_+_31755934_31755974	0.361047	GLI3	ENST00000354932.5|BPIFA2|ENSG00000131050.6|BPI fold containing family A, member 2
hg19_v2_chr3_-_192635943_192635955	0.361	GLI3	ENST00000392452.2|MB21D2|ENSG00000180611.6|Mab-21 domain containing 2
hg19_v2_chr6_-_53213587_53213772	0.36057	GLI3	ENST00000542638.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370913.5|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000541407.1|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr8_+_22102626_22102748	0.360272	GLI3	ENST00000519237.1|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa 	ENST00000397802.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr6_-_43478239_43478424	0.358341	GLI3	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chrX_+_30233668_30233698	0.35757	GLI3	ENST00000378988.4|MAGEB2|ENSG00000099399.5|melanoma antigen family B, 2
hg19_v2_chr16_+_68573116_68573228	0.35752	GLI3	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr13_-_21918947_21918984	0.35742	GLI3	ENST00000423575.1|LINC00539|ENSG00000224429.3|LINC00539
hg19_v2_chr22_+_39436862_39436924	0.356745	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.12|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F 	ENST00000452957.2|APOBEC3G|ENSG00000239713.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
hg19_v2_chrX_+_52780318_52780346	0.356577	GLI3	ENST00000375515.3|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B 	ENST00000276049.6|SSX2B|ENSG00000157950.10|synovial sarcoma, X breakpoint 2B
hg19_v2_chr12_+_128751948_128751948	0.356514	GLI3	ENST00000435159.2|TMEM132C|ENSG00000181234.8|transmembrane protein 132C
hg19_v2_chrX_-_11308598_11308610	0.356151	GLI3	ENST00000380717.3|ARHGAP6|ENSG00000047648.17|Rho GTPase activating protein 6
hg19_v2_chr5_+_149340339_149340358	0.355879	GLI3	ENST00000433184.1|SLC26A2|ENSG00000155850.7|solute carrier family 26 (anion exchanger), member 2
hg19_v2_chr18_-_12884150_12884250	0.354611	GLI3	ENST00000591115.1|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000309660.5|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr6_-_28226984_28227011	0.354499	GLI3	ENST00000423974.2|ZKSCAN4|ENSG00000187626.7|zinc finger with KRAB and SCAN domains 4
hg19_v2_chrX_+_17755696_17755845	0.354216	GLI3	ENST00000419185.1|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila)
hg19_v2_chr19_+_55085248_55085346	0.352842	GLI3	ENST00000391738.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000251376.3|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000391737.1|LILRA2|ENSG00000239998.1|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 	ENST00000396321.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000418536.2|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 	ENST00000448689.1|LILRB1|ENSG00000104972.10|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1
hg19_v2_chr1_+_10509971_10510095	0.352785	GLI3	ENST00000320498.4|CORT|ENSG00000241563.2|cortistatin
hg19_v2_chr2_+_25015968_25016029	0.352441	GLI3	ENST00000380834.2|CENPO|ENSG00000138092.6|centromere protein O 	ENST00000473706.1|CENPO|ENSG00000138092.6|centromere protein O
hg19_v2_chr19_-_54693401_54693491	0.352425	GLI3	ENST00000338624.6|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chr9_-_130524695_130524736	0.35239	GLI3	ENST00000440630.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000429553.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr8_-_145642267_145642279	0.352069	GLI3	ENST00000301305.3|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr1_-_202129105_202129140	0.351265	GLI3	ENST00000367279.4|PTPN7|ENSG00000143851.11|protein tyrosine phosphatase, non-receptor type 7
hg19_v2_chr5_-_180076580_180076605	0.350528	GLI3	ENST00000502649.1|FLT4|ENSG00000037280.11|fms-related tyrosine kinase 4
hg19_v2_chr1_-_45288932_45288932	0.349172	GLI3	ENST00000438067.1|PTCH2|ENSG00000117425.9|patched 2
hg19_v2_chr22_-_50970506_50970561	0.349007	GLI3	ENST00000428989.2|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B 	ENST00000403326.1|ODF3B|ENSG00000177989.9|outer dense fiber of sperm tails 3B
hg19_v2_chr4_+_148402069_148402099	0.34852	GLI3	ENST00000358556.4|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000339690.5|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000511804.1|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000324300.5|EDNRA|ENSG00000151617.11|endothelin receptor type A
hg19_v2_chr17_+_7253667_7253740	0.348251	GLI3	ENST00000570504.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 	ENST00000574499.1|ACAP1|ENSG00000072818.7|ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
hg19_v2_chr2_-_85637459_85637495	0.347318	GLI3	ENST00000409921.1|CAPG|ENSG00000042493.11|capping protein (actin filament), gelsolin-like
hg19_v2_chr5_+_61602055_61602083	0.346748	GLI3	ENST00000381103.2|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr16_+_29832634_29832661	0.346716	GLI3	ENST00000565164.1|MVP|ENSG00000013364.14|major vault protein 	ENST00000570234.1|MVP|ENSG00000013364.14|major vault protein
hg19_v2_chr3_+_45067659_45067675	0.346298	GLI3	ENST00000296130.4|CLEC3B|ENSG00000163815.5|C-type lectin domain family 3, member B
hg19_v2_chr2_-_208031542_208031595	0.346246	GLI3	ENST00000423015.1|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr21_+_47268058_47268079	0.345898	GLI3	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr16_+_70680439_70680482	0.344082	GLI3	ENST00000288098.2|IL34|ENSG00000157368.6|interleukin 34
hg19_v2_chr17_+_50939459_50939481	0.343792	GLI3	ENST00000412360.1|AC102948.2|ENSG00000226364.1|Uncharacterized protein
hg19_v2_chr5_+_12574944_12574973	0.343706	GLI3	ENST00000505877.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding) 	ENST00000513051.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding) 	ENST00000505196.1|CT49|ENSG00000248131.1|cancer/testis antigen 49 (non-protein coding)
hg19_v2_chr12_-_13248732_13248744	0.343586	GLI3	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr14_-_24729251_24729364	0.343576	GLI3	ENST00000559136.1|TGM1|ENSG00000092295.7|transglutaminase 1
hg19_v2_chr2_+_26785409_26785477	0.342755	GLI3	ENST00000329615.3|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70 	ENST00000409392.1|C2orf70|ENSG00000173557.10|chromosome 2 open reading frame 70
hg19_v2_chr19_+_8943074_8943074	0.342199	GLI3	ENST00000595891.1|MBD3L1|ENSG00000170948.3|methyl-CpG binding domain protein 3-like 1
hg19_v2_chr1_+_45205478_45205492	0.341954	GLI3	ENST00000452259.1|KIF2C|ENSG00000142945.8|kinesin family member 2C 	ENST00000372224.4|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr16_+_88704978_88705001	0.341587	GLI3	ENST00000244241.4|IL17C|ENSG00000124391.4|interleukin 17C
hg19_v2_chr14_-_60097524_60097538	0.341544	GLI3	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr19_+_17638041_17638055	0.341412	GLI3	ENST00000601861.1|FAM129C|ENSG00000167483.13|family with sequence similarity 129, member C
hg19_v2_chr9_-_130517309_130517388	0.341317	GLI3	ENST00000414380.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr11_-_119991589_119991609	0.341152	GLI3	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr6_+_52285046_52285124	0.340759	GLI3	ENST00000371068.5|EFHC1|ENSG00000096093.10|EF-hand domain (C-terminal) containing 1
hg19_v2_chr20_+_48884002_48884088	0.339643	GLI3	ENST00000425497.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3	ENST00000445003.1|RP11-290F20.3|ENSG00000224397.1|RP11-290F20.3
hg19_v2_chr2_+_192543694_192543717	0.339595	GLI3	ENST00000435931.1|NABP1|ENSG00000173559.8|nucleic acid binding protein 1
hg19_v2_chr6_+_116601330_116601381	0.339155	GLI3	ENST00000449314.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1	ENST00000453463.1|RP1-93H18.1|ENSG00000240050.1|RP1-93H18.1
hg19_v2_chr4_+_26859300_26859384	0.338191	GLI3	ENST00000494628.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr14_-_74959978_74959992	0.337839	GLI3	ENST00000541064.1|NPC2|ENSG00000119655.4|Niemann-Pick disease, type C2
hg19_v2_chr1_+_36789335_36789335	0.337224	GLI3	ENST00000373137.2|RP11-268J15.5|ENSG00000116883.8|RP11-268J15.5
hg19_v2_chr20_+_49411543_49411635	0.33696	GLI3	ENST00000609336.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4 	ENST00000445038.1|BCAS4|ENSG00000124243.13|breast carcinoma amplified sequence 4
hg19_v2_chr1_-_29508321_29508444	0.336652	GLI3	ENST00000546138.1|SRSF4|ENSG00000116350.11|serine/arginine-rich splicing factor 4
hg19_v2_chr19_-_54693146_54693249	0.336026	GLI3	ENST00000414665.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7 	ENST00000453320.1|MBOAT7|ENSG00000125505.12|membrane bound O-acyltransferase domain containing 7
hg19_v2_chrX_+_70364667_70364721	0.335306	GLI3	ENST00000536169.1|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000395855.2|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000374051.3|NLGN3|ENSG00000196338.8|neuroligin 3 	ENST00000358741.3|NLGN3|ENSG00000196338.8|neuroligin 3
hg19_v2_chr17_-_27278445_27278624	0.335182	GLI3	ENST00000268756.3|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584685.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr19_-_41196534_41196568	0.334681	GLI3	ENST00000252891.4|NUMBL|ENSG00000105245.5|numb homolog (Drosophila)-like
hg19_v2_chr12_-_4554780_4554780	0.334573	GLI3	ENST00000228837.2|FGF6|ENSG00000111241.2|fibroblast growth factor 6
hg19_v2_chr10_+_30723105_30723173	0.334026	GLI3	ENST00000375322.2|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr9_-_139927462_139927508	0.333985	GLI3	ENST00000314412.6|FUT7|ENSG00000180549.7|fucosyltransferase 7 (alpha (1,3) fucosyltransferase)
hg19_v2_chr1_-_241520525_241520536	0.333965	GLI3	ENST00000366565.1|RGS7|ENSG00000182901.11|regulator of G-protein signaling 7
hg19_v2_chr3_-_10052849_10052867	0.333823	GLI3	ENST00000437616.1|AC022007.5|ENSG00000206567.5|AC022007.5	ENST00000429065.2|AC022007.5|ENSG00000206567.5|AC022007.5
hg19_v2_chr20_-_1165117_1165117	0.332426	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr15_-_101084547_101084618	0.332167	GLI3	ENST00000394113.1|CERS3|ENSG00000154227.9|ceramide synthase 3
hg19_v2_chr19_-_11689752_11689801	0.330901	GLI3	ENST00000592659.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000592828.1|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000218758.5|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant 	ENST00000412435.2|ACP5|ENSG00000102575.6|acid phosphatase 5, tartrate resistant
hg19_v2_chr9_+_72658490_72658502	0.329925	GLI3	ENST00000377182.4|MAMDC2|ENSG00000165072.9|MAM domain containing 2
hg19_v2_chr8_+_22435762_22435792	0.329501	GLI3	ENST00000456545.1|PDLIM2|ENSG00000120913.19|PDZ and LIM domain 2 (mystique)
hg19_v2_chr14_+_52164675_52164706	0.329153	GLI3	ENST00000555936.1|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr17_-_34122596_34122711	0.328585	GLI3	ENST00000250144.8|MMP28|ENSG00000129270.11|matrix metallopeptidase 28
hg19_v2_chr1_+_17634689_17634696	0.32798	GLI3	ENST00000375453.1|PADI4|ENSG00000159339.9|peptidyl arginine deiminase, type IV 	ENST00000375448.4|PADI4|ENSG00000159339.9|peptidyl arginine deiminase, type IV
hg19_v2_chrX_-_51812268_51812368	0.327547	GLI3	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr1_+_210111570_210111603	0.325983	GLI3	ENST00000367019.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000472886.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr1_-_153585539_153585559	0.325665	GLI3	ENST00000368706.4|S100A16|ENSG00000188643.6|S100 calcium binding protein A16
hg19_v2_chr11_+_64053311_64053387	0.324677	GLI3	ENST00000540370.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr6_-_109777128_109777203	0.324658	GLI3	ENST00000358807.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENST00000358577.3|MICAL1|ENSG00000135596.13|microtubule associated monooxygenase, calponin and LIM domain containing 1
hg19_v2_chrX_+_49178536_49178536	0.324606	GLI3	ENST00000442437.2|GAGE12J|ENSG00000224659.2|G antigen 12J
hg19_v2_chr7_+_142985308_142985453	0.324264	GLI3	ENST00000310447.5|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr8_+_22102611_22102624	0.324037	GLI3	ENST00000306433.4|POLR3D|ENSG00000168495.8|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa
hg19_v2_chr12_-_55367361_55367507	0.323875	GLI3	ENST00000532804.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1 	ENST00000531122.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1 	ENST00000533446.1|TESPA1|ENSG00000135426.10|thymocyte expressed, positive selection associated 1
hg19_v2_chr1_-_203273676_203273784	0.323362	GLI3	ENST00000425698.1|RP11-134P9.1|ENSG00000233791.1|long intergenic non-protein coding RNA 1136
hg19_v2_chr7_+_142985467_142985547	0.323206	GLI3	ENST00000392925.2|CASP2|ENSG00000106144.15|caspase 2, apoptosis-related cysteine peptidase
hg19_v2_chr4_+_166300084_166300094	0.323055	GLI3	ENST00000402744.4|CPE|ENSG00000109472.9|carboxypeptidase E
hg19_v2_chr9_+_90112767_90112808	0.322713	GLI3	ENST00000408954.3|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr1_-_28559502_28559570	0.32153	GLI3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr18_+_59992514_59992525	0.320722	GLI3	ENST00000269485.7|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr9_+_139247484_139247509	0.31977	GLI3	ENST00000429455.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr17_+_62503073_62503143	0.319558	GLI3	ENST00000580188.1|CEP95|ENSG00000258890.2|centrosomal protein 95kDa 	ENST00000581056.1|CEP95|ENSG00000258890.2|centrosomal protein 95kDa
hg19_v2_chr17_+_32582293_32582312	0.319527	GLI3	ENST00000580907.1|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2 	ENST00000225831.4|CCL2|ENSG00000108691.5|chemokine (C-C motif) ligand 2
hg19_v2_chr19_+_12305824_12305890	0.318508	GLI3	ENST00000415793.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1	ENST00000440004.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1	ENST00000426044.1|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1
hg19_v2_chr2_+_114647617_114647739	0.317527	GLI3	ENST00000536059.1|ACTR3|ENSG00000115091.7|ARP3 actin-related protein 3 homolog (yeast)
hg19_v2_chr19_-_23941639_23941672	0.317233	GLI3	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr17_+_73642486_73642517	0.317168	GLI3	ENST00000579469.1|SMIM6|ENSG00000259120.2|small integral membrane protein 6
hg19_v2_chr15_-_26108355_26108417	0.317071	GLI3	ENST00000356865.6|ATP10A|ENSG00000206190.7|ATPase, class V, type 10A
hg19_v2_chr6_+_27356497_27356557	0.316616	GLI3	ENST00000244576.4|ZNF391|ENSG00000124613.4|zinc finger protein 391
hg19_v2_chrX_+_48542168_48542241	0.316274	GLI3	ENST00000376701.4|WAS|ENSG00000015285.6|Wiskott-Aldrich syndrome
hg19_v2_chr1_-_62785054_62785125	0.31621	GLI3	ENST00000371153.4|KANK4|ENSG00000132854.14|KN motif and ankyrin repeat domains 4
hg19_v2_chr16_+_89894875_89894907	0.316098	GLI3	ENST00000393062.2|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr21_-_46348694_46348788	0.315866	GLI3	ENST00000355153.4|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000397850.2|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr17_-_19062424_19062424	0.315436	GLI3	ENST00000399083.1|AC007952.6|ENSG00000197665.5|Uncharacterized protein
hg19_v2_chr7_+_30811004_30811058	0.313755	GLI3	ENST00000265299.6|FAM188B|ENSG00000106125.14|family with sequence similarity 188, member B
hg19_v2_chrX_+_48911090_48911113	0.313614	GLI3	ENST00000597275.1|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120
hg19_v2_chr8_-_101118439_101118545	0.312825	GLI3	ENST00000519408.1|RGS22|ENSG00000132554.15|regulator of G-protein signaling 22
hg19_v2_chr2_+_11273179_11273261	0.311744	GLI3	ENST00000381585.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50 	ENST00000405022.3|C2orf50|ENSG00000150873.7|chromosome 2 open reading frame 50
hg19_v2_chr17_-_79359154_79359164	0.311268	GLI3	ENST00000572077.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr16_+_2880296_2880310	0.310534	GLI3	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr9_+_112542572_112542590	0.310503	GLI3	ENST00000374530.3|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough
hg19_v2_chr17_-_76921459_76921478	0.310048	GLI3	ENST00000262768.7|TIMP2|ENSG00000035862.8|TIMP metallopeptidase inhibitor 2
hg19_v2_chr17_-_62502399_62502411	0.309938	GLI3	ENST00000450599.2|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000585060.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr21_-_47738112_47738133	0.309509	GLI3	ENST00000417060.1|C21orf58|ENSG00000160298.13|chromosome 21 open reading frame 58
hg19_v2_chr9_-_113800705_113800781	0.308862	GLI3	ENST00000441240.1|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr11_+_46332679_46332708	0.307497	GLI3	ENST00000530518.1|CREB3L1|ENSG00000157613.6|cAMP responsive element binding protein 3-like 1
hg19_v2_chr11_-_117103208_117103288	0.307249	GLI3	ENST00000320934.3|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7 	ENST00000530269.1|PCSK7|ENSG00000160613.8|proprotein convertase subtilisin/kexin type 7
hg19_v2_chr9_+_137533615_137533660	0.306086	GLI3	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr1_+_15479021_15479053	0.30552	GLI3	ENST00000428417.1|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr5_+_173416162_173416187	0.304942	GLI3	ENST00000340147.6|C5orf47|ENSG00000185056.9|chromosome 5 open reading frame 47
hg19_v2_chr8_+_121137333_121137352	0.30473	GLI3	ENST00000309791.4|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000297848.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1 	ENST00000247781.3|COL14A1|ENSG00000187955.7|collagen, type XIV, alpha 1
hg19_v2_chr14_-_92302784_92302805	0.303863	GLI3	ENST00000340892.5|TC2N|ENSG00000165929.8|tandem C2 domains, nuclear 	ENST00000360594.5|TC2N|ENSG00000165929.8|tandem C2 domains, nuclear
hg19_v2_chr11_-_110968081_110968109	0.303318	GLI3	ENST00000603154.1|RP11-89C3.4|ENSG00000271584.1|RP11-89C3.4
hg19_v2_chr5_+_72509751_72509809	0.303065	GLI3	ENST00000515556.1|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1	ENST00000513379.1|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1	ENST00000427584.2|RP11-60A8.1|ENSG00000249743.1|RP11-60A8.1
hg19_v2_chr17_-_73840614_73840645	0.302439	GLI3	ENST00000586108.1|UNC13D|ENSG00000092929.7|unc-13 homolog D (C. elegans)
hg19_v2_chr17_-_47286729_47286764	0.301941	GLI3	ENST00000300406.2|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511277.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 	ENST00000511673.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr1_+_154947148_154947175	0.301844	GLI3	ENST00000368436.1|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B 	ENST00000308987.5|CKS1B|ENSG00000173207.8|CDC28 protein kinase regulatory subunit 1B
hg19_v2_chr19_-_18197799_18197815	0.301828	GLI3	ENST00000430026.3|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1 	ENST00000593993.2|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr11_-_64646086_64646191	0.30127	GLI3	ENST00000320631.3|EHD1|ENSG00000110047.13|EH-domain containing 1
hg19_v2_chr1_+_15479054_15479073	0.301227	GLI3	ENST00000376014.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000451326.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr10_+_119184702_119184711	0.30092	GLI3	ENST00000549104.1|CTA-109P11.4|ENSG00000258114.1|CTA-109P11.4
hg19_v2_chr11_-_119217365_119217398	0.300879	GLI3	ENST00000360167.4|MFRP|ENSG00000235718.3|membrane frizzled-related protein 	ENST00000445041.2|C1QTNF5|ENSG00000223953.3|C1q and tumor necrosis factor related protein 5 	ENST00000555262.1|MFRP|ENSG00000235718.3|membrane frizzled-related protein 	ENST00000449574.2|MFRP|ENSG00000235718.3|membrane frizzled-related protein
hg19_v2_chrX_+_17755563_17755618	0.300806	GLI3	ENST00000380045.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380041.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000380043.3|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila) 	ENST00000398080.1|SCML1|ENSG00000047634.10|sex comb on midleg-like 1 (Drosophila)
hg19_v2_chrX_+_51928002_51928017	0.300443	GLI3	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr13_-_30683005_30683037	0.299862	GLI3	ENST00000413591.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365 	ENST00000432770.1|LINC00365|ENSG00000224511.1|long intergenic non-protein coding RNA 365
hg19_v2_chr3_+_136537911_136538003	0.299701	GLI3	ENST00000393079.3|SLC35G2|ENSG00000168917.8|solute carrier family 35, member G2
hg19_v2_chr18_-_12884259_12884337	0.299566	GLI3	ENST00000353319.4|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2 	ENST00000327283.3|PTPN2|ENSG00000175354.14|protein tyrosine phosphatase, non-receptor type 2
hg19_v2_chr1_-_21606013_21606059	0.298596	GLI3	ENST00000357071.4|ECE1|ENSG00000117298.10|endothelin converting enzyme 1
hg19_v2_chr14_+_101295638_101295752	0.297486	GLI3	ENST00000523671.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr1_+_2043086_2043109	0.296889	GLI3	ENST00000470986.1|PRKCZ|ENSG00000067606.11|protein kinase C, zeta
hg19_v2_chr19_+_58790314_58790358	0.296761	GLI3	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr1_+_92414928_92414944	0.296558	GLI3	ENST00000362005.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000370389.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000399546.2|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000423434.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000394530.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000440509.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chrX_-_40506766_40506824	0.295961	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000440784.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000327877.5|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378426.1|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38 	ENST00000378418.2|CXorf38|ENSG00000185753.8|chromosome X open reading frame 38
hg19_v2_chr6_+_42883727_42883740	0.295739	GLI3	ENST00000304672.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha 	ENST00000441198.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha 	ENST00000446507.1|PTCRA|ENSG00000171611.5|pre T-cell antigen receptor alpha
hg19_v2_chr16_+_20817746_20817755	0.295329	GLI3	ENST00000568894.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr9_+_132044730_132044797	0.295093	GLI3	ENST00000455981.1|RP11-344B5.2|ENSG00000224307.1|RP11-344B5.2
hg19_v2_chr16_+_57576584_57576601	0.294946	GLI3	ENST00000340339.4|GPR114|ENSG00000159618.11|G protein-coupled receptor 114
hg19_v2_chr9_-_113800317_113800328	0.29438	GLI3	ENST00000374431.3|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr19_+_41281060_41281169	0.290577	GLI3	ENST00000594436.1|MIA|ENSG00000261857.2|melanoma inhibitory activity 	ENST00000597784.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr6_+_31465892_31465937	0.29026	GLI3	ENST00000252229.6|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B 	ENST00000427115.1|MICB|ENSG00000204516.5|MHC class I polypeptide-related sequence B
hg19_v2_chr8_+_21899898_21899937	0.289699	GLI3	ENST00000518533.1|FGF17|ENSG00000158815.6|fibroblast growth factor 17 	ENST00000359441.3|FGF17|ENSG00000158815.6|fibroblast growth factor 17
hg19_v2_chr6_+_41010293_41010457	0.289165	GLI3	ENST00000373161.1|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000373158.2|TSPO2|ENSG00000112212.7|translocator protein 2 	ENST00000470917.1|TSPO2|ENSG00000112212.7|translocator protein 2
hg19_v2_chr21_-_46964306_46964332	0.288932	GLI3	ENST00000443742.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000528477.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1 	ENST00000567670.1|SLC19A1|ENSG00000173638.14|solute carrier family 19 (folate transporter), member 1
hg19_v2_chr17_+_76374714_76374759	0.288748	GLI3	ENST00000262764.6|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000589689.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000329897.7|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000592043.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1 	ENST00000587356.1|PGS1|ENSG00000087157.14|phosphatidylglycerophosphate synthase 1
hg19_v2_chr14_+_61788429_61788501	0.288611	GLI3	ENST00000332981.5|PRKCH|ENSG00000027075.9|protein kinase C, eta
hg19_v2_chr16_+_67918708_67918820	0.288508	GLI3	ENST00000339176.3|NRN1L|ENSG00000188038.3|neuritin 1-like 	ENST00000576758.1|NRN1L|ENSG00000188038.3|neuritin 1-like
hg19_v2_chr10_-_77161533_77161590	0.288483	GLI3	ENST00000535216.1|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr3_+_46204959_46205096	0.288006	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.10|chemokine (C-C motif) receptor 3
hg19_v2_chr8_+_31497271_31497285	0.287661	GLI3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr2_-_145275211_145275220	0.287586	GLI3	ENST00000462355.1|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr1_-_155177677_155177739	0.287285	GLI3	ENST00000368378.3|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000541990.1|THBS3|ENSG00000169231.9|thrombospondin 3 	ENST00000457183.2|THBS3|ENSG00000169231.9|thrombospondin 3
hg19_v2_chr9_+_90112117_90112164	0.286941	GLI3	ENST00000358077.5|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr6_-_74233480_74233520	0.286224	GLI3	ENST00000455918.1|EEF1A1|ENSG00000156508.13|eukaryotic translation elongation factor 1 alpha 1
hg19_v2_chr9_+_136399929_136399975	0.285667	GLI3	ENST00000393060.1|ADAMTSL2|ENSG00000197859.5|ADAMTS-like 2
hg19_v2_chr17_+_39969183_39969265	0.285052	GLI3	ENST00000321562.4|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr10_+_134145735_134145783	0.283927	GLI3	ENST00000368613.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr9_+_135037334_135037450	0.283678	GLI3	ENST00000393229.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000360670.3|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000393228.4|NTNG2|ENSG00000196358.6|netrin G2 	ENST00000372179.3|NTNG2|ENSG00000196358.6|netrin G2
hg19_v2_chr6_-_2876744_2876795	0.283187	GLI3	ENST00000420981.2|RP11-420G6.4|ENSG00000230438.5|RP11-420G6.4
hg19_v2_chr1_+_92414952_92414991	0.283067	GLI3	ENST00000449584.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000427104.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000355011.3|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000448194.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000426141.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000450792.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000548992.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000552654.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific 	ENST00000457265.1|BRDT|ENSG00000137948.14|bromodomain, testis-specific
hg19_v2_chrX_-_38186811_38186826	0.282598	GLI3	ENST00000318842.7|RPGR|ENSG00000156313.8|retinitis pigmentosa GTPase regulator
hg19_v2_chr22_-_21482046_21482046	0.282406	GLI3	ENST00000419447.1|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr8_-_145642203_145642235	0.282353	GLI3	ENST00000526658.1|SLC39A4|ENSG00000147804.5|solute carrier family 39 (zinc transporter), member 4
hg19_v2_chr1_-_11865982_11866005	0.281879	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr7_-_142176790_142176842	0.28187	GLI3	ENST00000390369.2|TRBV7-4|ENSG00000253409.1|T cell receptor beta variable 7-4 (gene/pseudogene)
hg19_v2_chr20_-_58508702_58508728	0.28155	GLI3	ENST00000357552.3|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2 	ENST00000425931.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr21_+_47540424_47540474	0.280917	GLI3	ENST00000413758.1|COL6A2|ENSG00000142173.10|collagen, type VI, alpha 2
hg19_v2_chr17_+_39968926_39969042	0.280604	GLI3	ENST00000585664.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000585922.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa 	ENST00000429461.1|FKBP10|ENSG00000141756.14|FK506 binding protein 10, 65 kDa
hg19_v2_chr12_-_108991778_108991800	0.280268	GLI3	ENST00000549447.1|TMEM119|ENSG00000183160.8|transmembrane protein 119
hg19_v2_chr1_-_211752073_211752084	0.280261	GLI3	ENST00000367001.4|SLC30A1|ENSG00000170385.9|solute carrier family 30 (zinc transporter), member 1
hg19_v2_chrX_-_47489244_47489364	0.279777	GLI3	ENST00000469388.1|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000396992.3|CFP|ENSG00000126759.8|complement factor properdin 	ENST00000377005.2|CFP|ENSG00000126759.8|complement factor properdin
hg19_v2_chr5_+_169931009_169931065	0.279642	GLI3	ENST00000328939.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1 	ENST00000390656.4|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr21_-_33651324_33651380	0.279388	GLI3	ENST00000290130.3|MIS18A|ENSG00000159055.3|MIS18 kinetochore protein A
hg19_v2_chr16_+_55522536_55522599	0.279205	GLI3	ENST00000570283.1|MMP2|ENSG00000087245.8|matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
hg19_v2_chr19_-_3606590_3606658	0.278882	GLI3	ENST00000411851.3|TBXA2R|ENSG00000006638.7|thromboxane A2 receptor
hg19_v2_chr1_+_28206150_28206242	0.278133	GLI3	ENST00000456990.1|THEMIS2|ENSG00000130775.11|thymocyte selection associated family member 2
hg19_v2_chr8_+_21882244_21882362	0.277513	GLI3	ENST00000289820.6|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000381530.5|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr1_+_167691191_167691389	0.276816	GLI3	ENST00000392121.3|MPZL1|ENSG00000197965.7|myelin protein zero-like 1 	ENST00000474859.1|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr6_-_159420780_159420872	0.276387	GLI3	ENST00000449822.1|RSPH3|ENSG00000130363.7|radial spoke 3 homolog (Chlamydomonas)
hg19_v2_chr19_-_42931567_42931581	0.276096	GLI3	ENST00000244289.4|LIPE|ENSG00000079435.5|lipase, hormone-sensitive
hg19_v2_chr11_-_65640198_65640281	0.275852	GLI3	ENST00000528176.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chrX_-_100914781_100914876	0.275688	GLI3	ENST00000431597.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000458024.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000413506.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000440675.1|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000328766.5|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2 	ENST00000356824.4|ARMCX2|ENSG00000184867.9|armadillo repeat containing, X-linked 2
hg19_v2_chr6_-_169563013_169563043	0.275	GLI3	ENST00000439703.1|RP11-417E7.1|ENSG00000223485.1|RP11-417E7.1
hg19_v2_chr11_+_89867803_89867906	0.274588	GLI3	ENST00000321955.4|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000525171.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2 	ENST00000375944.3|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr5_+_61602236_61602301	0.274356	GLI3	ENST00000514082.1|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A 	ENST00000407818.3|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr1_-_157108266_157108347	0.274262	GLI3	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr21_-_46492927_46492927	0.273893	GLI3	ENST00000599569.1|AP001579.1|ENSG00000268856.1|Uncharacterized protein
hg19_v2_chr16_+_20817761_20817837	0.273475	GLI3	ENST00000568046.1|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp  	ENST00000261377.6|AC004381.6|ENSG00000005189.15|Putative RNA exonuclease NEF-sp
hg19_v2_chr19_+_58514229_58514289	0.273165	GLI3	ENST00000546949.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000553254.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000547364.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein
hg19_v2_chr3_-_47619623_47619623	0.272691	GLI3	ENST00000456150.1|CSPG5|ENSG00000114646.5|chondroitin sulfate proteoglycan 5 (neuroglycan C)
hg19_v2_chr3_+_4535025_4535040	0.272385	GLI3	ENST00000302640.8|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000354582.6|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000423119.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000357086.4|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1 	ENST00000456211.2|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr19_-_23941680_23941704	0.272333	GLI3	ENST00000402377.3|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr15_+_89164520_89164559	0.272244	GLI3	ENST00000332810.3|AEN|ENSG00000181026.13|apoptosis enhancing nuclease
hg19_v2_chr10_-_126847276_126847294	0.271755	GLI3	ENST00000531469.1|CTBP2|ENSG00000175029.12|C-terminal binding protein 2
hg19_v2_chr22_-_22901636_22901747	0.271243	GLI3	ENST00000406503.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000439106.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000402697.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000543184.1|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma 	ENST00000398743.2|PRAME|ENSG00000185686.13|preferentially expressed antigen in melanoma
hg19_v2_chr10_-_134145321_134145369	0.270972	GLI3	ENST00000368625.4|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368619.3|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000456004.1|STK32C|ENSG00000165752.12|serine/threonine kinase 32C 	ENST00000368620.2|STK32C|ENSG00000165752.12|serine/threonine kinase 32C
hg19_v2_chr17_-_62502639_62502849	0.270574	GLI3	ENST00000225792.5|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000581697.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000584279.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5 	ENST00000577922.1|DDX5|ENSG00000108654.7|DEAD (Asp-Glu-Ala-Asp) box helicase 5
hg19_v2_chr1_-_161600942_161600975	0.269614	GLI3	ENST00000421702.2|FCGR3B|ENSG00000162747.5|Fc fragment of IgG, low affinity IIIb, receptor (CD16b)
hg19_v2_chr6_+_163148161_163148181	0.268915	GLI3	ENST00000337019.3|PACRG|ENSG00000112530.7|PARK2 co-regulated 	ENST00000366889.2|PACRG|ENSG00000112530.7|PARK2 co-regulated
hg19_v2_chr4_-_17812309_17812394	0.268904	GLI3	ENST00000382247.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16 	ENST00000536863.1|DCAF16|ENSG00000163257.6|DDB1 and CUL4 associated factor 16
hg19_v2_chr20_-_58508359_58508420	0.267178	GLI3	ENST00000446834.1|SYCP2|ENSG00000196074.8|synaptonemal complex protein 2
hg19_v2_chr19_-_3606838_3606898	0.266841	GLI3	ENST00000375190.4|TBXA2R|ENSG00000006638.7|thromboxane A2 receptor
hg19_v2_chr1_-_38273840_38273888	0.266317	GLI3	ENST00000373044.2|YRDC|ENSG00000196449.3|yrdC N(6)-threonylcarbamoyltransferase domain containing
hg19_v2_chrX_+_15525426_15525441	0.266263	GLI3	ENST00000342014.6|BMX|ENSG00000102010.10|BMX non-receptor tyrosine kinase
hg19_v2_chr19_+_35491330_35491373	0.265484	GLI3	ENST00000411896.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000424536.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr19_+_677885_677942	0.265345	GLI3	ENST00000591552.2|FSTL3|ENSG00000070404.5|follistatin-like 3 (secreted glycoprotein)
hg19_v2_chr7_-_6570817_6570859	0.265066	GLI3	ENST00000435185.1|GRID2IP|ENSG00000215045.4|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein
hg19_v2_chr14_+_104689918_104689951	0.26501	GLI3	ENST00000553757.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000556528.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2	ENST00000555282.1|RP11-260M19.2|ENSG00000258913.1|RP11-260M19.2
hg19_v2_chr22_-_50708781_50708852	0.264647	GLI3	ENST00000449719.2|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11 	ENST00000330651.6|MAPK11|ENSG00000185386.10|mitogen-activated protein kinase 11
hg19_v2_chr3_+_11314099_11314122	0.264602	GLI3	ENST00000446450.2|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354956.5|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000354449.3|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000419112.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr21_-_33984888_33984903	0.26387	GLI3	ENST00000382549.4|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59 	ENST00000540881.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr22_+_31892373_31892556	0.26361	GLI3	ENST00000443011.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400289.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000444859.1|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast) 	ENST00000400288.2|SFI1|ENSG00000198089.10|Sfi1 homolog, spindle assembly associated (yeast)
hg19_v2_chr10_+_88718314_88718388	0.263413	GLI3	ENST00000348795.4|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr1_+_210111534_210111541	0.263262	GLI3	ENST00000422431.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000534859.1|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000399639.2|SYT14|ENSG00000143469.12|synaptotagmin XIV 	ENST00000537238.1|SYT14|ENSG00000143469.12|synaptotagmin XIV
hg19_v2_chr1_+_15802594_15802601	0.262491	GLI3	ENST00000375910.3|CELA2B|ENSG00000215704.5|chymotrypsin-like elastase family, member 2B
hg19_v2_chr1_-_241520385_241520457	0.261202	GLI3	ENST00000366564.1|RGS7|ENSG00000182901.11|regulator of G-protein signaling 7
hg19_v2_chr9_+_87285257_87285311	0.260937	GLI3	ENST00000323115.4|NTRK2|ENSG00000148053.11|neurotrophic tyrosine kinase, receptor, type 2
hg19_v2_chr5_+_61601965_61602002	0.260764	GLI3	ENST00000401507.3|KIF2A|ENSG00000068796.12|kinesin heavy chain member 2A
hg19_v2_chr14_-_21056121_21056206	0.260204	GLI3	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr20_+_42143136_42143166	0.25961	GLI3	ENST00000373134.1|L3MBTL1|ENSG00000185513.10|l(3)mbt-like 1 (Drosophila)
hg19_v2_chr1_+_167691185_167691188	0.259465	GLI3	ENST00000359523.2|MPZL1|ENSG00000197965.7|myelin protein zero-like 1
hg19_v2_chr14_+_21423611_21423665	0.259241	GLI3	ENST00000304625.2|RNASE2|ENSG00000169385.2|ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin)
hg19_v2_chr8_-_42065187_42065242	0.258352	GLI3	ENST00000270189.6|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000352041.3|PLAT|ENSG00000104368.13|plasminogen activator, tissue 	ENST00000220809.4|PLAT|ENSG00000104368.13|plasminogen activator, tissue
hg19_v2_chr2_+_131769256_131769328	0.25827	GLI3	ENST00000355771.3|ARHGEF4|ENSG00000136002.12|Rho guanine nucleotide exchange factor (GEF) 4
hg19_v2_chr11_-_128457446_128457461	0.257853	GLI3	ENST00000392668.4|ETS1|ENSG00000134954.10|v-ets avian erythroblastosis virus E26 oncogene homolog 1
hg19_v2_chr3_-_10332416_10332446	0.257183	GLI3	ENST00000450603.1|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide 	ENST00000449554.2|GHRL|ENSG00000157017.11|ghrelin/obestatin prepropeptide
hg19_v2_chr19_-_10679644_10679661	0.256681	GLI3	ENST00000393599.2|CDKN2D|ENSG00000129355.6|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
hg19_v2_chr11_-_796197_796361	0.256557	GLI3	ENST00000530360.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000528606.1|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22 	ENST00000320230.5|SLC25A22|ENSG00000177542.6|solute carrier family 25 (mitochondrial carrier: glutamate), member 22
hg19_v2_chr2_-_48982708_48982837	0.256321	GLI3	ENST00000428232.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000405626.1|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor 	ENST00000294954.7|LHCGR|ENSG00000138039.10|luteinizing hormone/choriogonadotropin receptor
hg19_v2_chr7_+_87563458_87563489	0.255441	GLI3	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr12_+_32112340_32112358	0.254773	GLI3	ENST00000540924.1|KIAA1551|ENSG00000174718.7|KIAA1551 	ENST00000312561.4|KIAA1551|ENSG00000174718.7|KIAA1551
hg19_v2_chr17_+_75369167_75369272	0.254157	GLI3	ENST00000423034.2|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chrX_-_52683950_52683950	0.253536	GLI3	ENST00000298181.5|SSX7|ENSG00000187754.8|synovial sarcoma, X breakpoint 7
hg19_v2_chr8_-_128960591_128960591	0.252382	GLI3	ENST00000539634.1|TMEM75|ENSG00000256655.1|transmembrane protein 75
hg19_v2_chr1_-_26232951_26232959	0.252168	GLI3	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr1_+_183774240_183774270	0.25189	GLI3	ENST00000360851.3|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr8_+_21881636_21881651	0.251884	GLI3	ENST00000520125.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000521157.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000397940.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2 	ENST00000522813.1|NPM2|ENSG00000158806.9|nucleophosmin/nucleoplasmin 2
hg19_v2_chr9_-_72435576_72435655	0.251487	GLI3	ENST00000453410.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000526458.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head) 	ENST00000439418.1|C9orf135-AS1|ENSG00000225626.2|C9orf135 antisense RNA 1 (head to head)
hg19_v2_chr16_+_16043406_16043434	0.251334	GLI3	ENST00000399410.3|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000399408.2|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000346370.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000351154.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000345148.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1 	ENST00000349029.5|ABCC1|ENSG00000103222.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
hg19_v2_chr21_-_36260980_36261011	0.251192	GLI3	ENST00000344691.4|RUNX1|ENSG00000159216.14|runt-related transcription factor 1 	ENST00000358356.5|RUNX1|ENSG00000159216.14|runt-related transcription factor 1
hg19_v2_chr22_-_38349552_38349676	0.250938	GLI3	ENST00000422191.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000249079.2|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000418863.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403305.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23 	ENST00000403026.1|C22orf23|ENSG00000128346.6|chromosome 22 open reading frame 23
hg19_v2_chr9_-_16215897_16215897	0.250838	GLI3	ENST00000433347.1|C9orf92|ENSG00000205549.4|chromosome 9 open reading frame 92
hg19_v2_chr3_-_150421752_150421771	0.250692	GLI3	ENST00000498386.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr11_-_64511789_64512061	0.25046	GLI3	ENST00000419843.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394430.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr9_-_113800341_113800373	0.25002	GLI3	ENST00000358883.4|LPAR1|ENSG00000198121.9|lysophosphatidic acid receptor 1
hg19_v2_chr4_-_40632844_40632877	0.248378	GLI3	ENST00000505414.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr7_+_87563557_87563735	0.247899	GLI3	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr17_+_4835580_4835593	0.24765	GLI3	ENST00000329125.5|GP1BA|ENSG00000185245.6|glycoprotein Ib (platelet), alpha polypeptide
hg19_v2_chr3_+_101568349_101568365	0.247284	GLI3	ENST00000326151.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 	ENST00000326172.5|NFKBIZ|ENSG00000144802.7|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
hg19_v2_chr22_-_39715600_39715776	0.246912	GLI3	ENST00000427905.1|RPL3|ENSG00000100316.11|ribosomal protein L3 	ENST00000402527.1|RPL3|ENSG00000100316.11|ribosomal protein L3 	ENST00000216146.4|RPL3|ENSG00000100316.11|ribosomal protein L3
hg19_v2_chr2_-_224702740_224702761	0.246658	GLI3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr13_+_25591521_25591541	0.246626	GLI3	ENST00000599825.1|LSP1|ENSG00000269099.1|Lymphocyte-specific protein 1; Uncharacterized protein
hg19_v2_chr17_+_73996987_73996987	0.246334	GLI3	ENST00000588812.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3 	ENST00000448471.1|CDK3|ENSG00000250506.2|cyclin-dependent kinase 3
hg19_v2_chr17_-_13505219_13505299	0.246186	GLI3	ENST00000284110.1|HS3ST3A1|ENSG00000153976.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
hg19_v2_chr4_-_96470350_96470373	0.244663	GLI3	ENST00000504962.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000453304.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans) 	ENST00000506749.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr7_+_143078652_143078754	0.244045	GLI3	ENST00000354434.4|ZYX|ENSG00000159840.11|zyxin 	ENST00000449423.2|ZYX|ENSG00000159840.11|zyxin
hg19_v2_chr1_+_179263308_179263455	0.244036	GLI3	ENST00000426956.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr12_-_2966193_2966213	0.243433	GLI3	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr17_+_81037473_81037567	0.243	GLI3	ENST00000320095.7|METRNL|ENSG00000176845.8|meteorin, glial cell differentiation regulator-like
hg19_v2_chr8_-_21771214_21771371	0.242707	GLI3	ENST00000276420.4|DOK2|ENSG00000147443.8|docking protein 2, 56kDa
hg19_v2_chr19_-_54618650_54618688	0.241814	GLI3	ENST00000391757.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr15_+_74287035_74287117	0.241783	GLI3	ENST00000395132.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268059.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000354026.6|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000268058.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000565898.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569477.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000569965.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000567543.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000436891.3|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000435786.2|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000564428.1|PML|ENSG00000140464.15|promyelocytic leukemia 	ENST00000359928.4|PML|ENSG00000140464.15|promyelocytic leukemia
hg19_v2_chr15_-_42565606_42565649	0.241555	GLI3	ENST00000307216.6|TMEM87A|ENSG00000103978.11|transmembrane protein 87A 	ENST00000448392.1|TMEM87A|ENSG00000103978.11|transmembrane protein 87A
hg19_v2_chr14_+_72052983_72053003	0.241212	GLI3	ENST00000358550.2|SIPA1L1|ENSG00000197555.5|signal-induced proliferation-associated 1 like 1
hg19_v2_chr19_+_54705025_54705034	0.240993	GLI3	ENST00000441429.1|RPS9|ENSG00000170889.9|ribosomal protein S9
hg19_v2_chrX_-_48271344_48271344	0.24059	GLI3	ENST00000376884.2|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B 	ENST00000396928.1|SSX4B|ENSG00000198946.3|synovial sarcoma, X breakpoint 4B
hg19_v2_chr10_+_50887683_50887735	0.240382	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374111.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000374112.3|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53 	ENST00000535836.1|C10orf53|ENSG00000178645.8|chromosome 10 open reading frame 53
hg19_v2_chrX_+_23685563_23685648	0.24031	GLI3	ENST00000379341.4|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr17_+_80193644_80193654	0.239697	GLI3	ENST00000582946.1|SLC16A3|ENSG00000141526.10|solute carrier family 16 (monocarboxylate transporter), member 3
hg19_v2_chr1_+_183774285_183774294	0.239525	GLI3	ENST00000539189.1|RGL1|ENSG00000143344.11|ral guanine nucleotide dissociation stimulator-like 1
hg19_v2_chr1_-_6052463_6052542	0.239459	GLI3	ENST00000378156.4|NPHP4|ENSG00000131697.13|nephronophthisis 4
hg19_v2_chr14_+_106355918_106355942	0.238938	GLI3	ENST00000414005.1|AL122127.25|ENSG00000244620.1|AL122127.25
hg19_v2_chr2_+_171627597_171627623	0.238612	GLI3	ENST00000429172.1|AC007405.6|ENSG00000239467.1|AC007405.6	ENST00000426475.1|AC007405.6|ENSG00000239467.1|AC007405.6
hg19_v2_chr5_-_179107975_179108039	0.238417	GLI3	ENST00000376974.4|CBY3|ENSG00000204659.4|chibby homolog 3 (Drosophila)
hg19_v2_chr10_+_82298088_82298088	0.238028	GLI3	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr10_+_52751010_52751118	0.237904	GLI3	ENST00000373985.1|PRKG1|ENSG00000185532.10|protein kinase, cGMP-dependent, type I
hg19_v2_chr22_+_18834324_18834324	0.237145	GLI3	ENST00000342005.4|AC008132.13|ENSG00000161103.7|Uncharacterized protein
hg19_v2_chr10_+_134145614_134145724	0.236685	GLI3	ENST00000368615.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000392638.2|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000344079.5|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000356571.4|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27 	ENST00000368614.3|LRRC27|ENSG00000148814.13|leucine rich repeat containing 27
hg19_v2_chr1_+_179262905_179262986	0.235992	GLI3	ENST00000539888.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000540564.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000535686.1|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1 	ENST00000367619.3|SOAT1|ENSG00000057252.8|sterol O-acyltransferase 1
hg19_v2_chr21_-_46340884_46341048	0.23592	GLI3	ENST00000302347.5|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) 	ENST00000517819.1|ITGB2|ENSG00000160255.12|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
hg19_v2_chr7_+_33168856_33168913	0.235829	GLI3	ENST00000432983.1|BBS9|ENSG00000122507.16|Bardet-Biedl syndrome 9
hg19_v2_chr2_+_241625749_241625758	0.235168	GLI3	ENST00000407635.2|AC011298.2|ENSG00000219159.3|AC011298.2
hg19_v2_chr7_+_89841000_89841023	0.235008	GLI3	ENST00000287908.3|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr2_+_95537248_95537259	0.234996	GLI3	ENST00000427593.2|TEKT4|ENSG00000163060.6|tektin 4
hg19_v2_chr11_+_393428_393463	0.234973	GLI3	ENST00000533249.1|PKP3|ENSG00000184363.5|plakophilin 3 	ENST00000527442.1|PKP3|ENSG00000184363.5|plakophilin 3
hg19_v2_chr17_-_48785216_48785291	0.234347	GLI3	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr16_-_755819_755860	0.233547	GLI3	ENST00000397621.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr14_+_104394770_104394820	0.233238	GLI3	ENST00000409874.4|TDRD9|ENSG00000156414.14|tudor domain containing 9 	ENST00000339063.5|TDRD9|ENSG00000156414.14|tudor domain containing 9
hg19_v2_chrX_-_8769378_8769424	0.232912	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A 	ENST00000381003.3|FAM9A|ENSG00000183304.6|family with sequence similarity 9, member A
hg19_v2_chrX_-_107334790_107334848	0.232869	GLI3	ENST00000217958.3|PSMD10|ENSG00000101843.14|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
hg19_v2_chr10_-_77161650_77161664	0.23262	GLI3	ENST00000372524.4|ZNF503|ENSG00000165655.14|zinc finger protein 503
hg19_v2_chr7_+_64363625_64363667	0.23261	GLI3	ENST00000476120.1|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000319636.5|ZNF273|ENSG00000198039.7|zinc finger protein 273 	ENST00000545510.1|ZNF273|ENSG00000198039.7|zinc finger protein 273
hg19_v2_chr3_-_169899504_169899542	0.232555	GLI3	ENST00000474275.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000484931.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000494943.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000497658.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000465896.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000475729.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000495893.2|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000481639.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000467570.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila) 	ENST00000466189.1|PHC3|ENSG00000173889.11|polyhomeotic homolog 3 (Drosophila)
hg19_v2_chr21_-_45079341_45079400	0.232368	GLI3	ENST00000443485.1|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein 	ENST00000291560.2|HSF2BP|ENSG00000160207.4|heat shock transcription factor 2 binding protein
hg19_v2_chr10_+_88718397_88718424	0.232191	GLI3	ENST00000372017.3|SNCG|ENSG00000173267.9|synuclein, gamma (breast cancer-specific protein 1)
hg19_v2_chr2_+_10262442_10262479	0.231996	GLI3	ENST00000360566.2|RRM2|ENSG00000171848.9|ribonucleotide reductase M2
hg19_v2_chr11_+_60501007_60501007	0.231714	GLI3	ENST00000529108.1|MS4A18|ENSG00000214782.3|membrane-spanning 4-domains, subfamily A, member 18
hg19_v2_chr3_+_187930491_187930511	0.231426	GLI3	ENST00000443217.1|LPP|ENSG00000145012.8|LIM domain containing preferred translocation partner in lipoma
hg19_v2_chr16_+_66400533_66400545	0.231368	GLI3	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chrX_+_51927919_51927991	0.230624	GLI3	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr21_-_28215332_28215347	0.230598	GLI3	ENST00000517777.1|ADAMTS1|ENSG00000154734.10|ADAM metallopeptidase with thrombospondin type 1 motif, 1
hg19_v2_chr16_+_57653854_57653968	0.230351	GLI3	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr1_+_40420802_40420836	0.229787	GLI3	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chrX_+_49160148_49160148	0.229614	GLI3	ENST00000407599.3|GAGE10|ENSG00000215274.5|G antigen 10
hg19_v2_chr1_-_1051455_1051495	0.2288	GLI3	ENST00000379339.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000480643.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000434641.1|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159 	ENST00000421241.2|C1orf159|ENSG00000131591.13|chromosome 1 open reading frame 159
hg19_v2_chr12_-_13248562_13248596	0.228651	GLI3	ENST00000457134.2|GSG1|ENSG00000111305.14|germ cell associated 1 	ENST00000537302.1|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr2_+_159825143_159825190	0.228597	GLI3	ENST00000454300.1|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 	ENST00000263635.6|TANC1|ENSG00000115183.9|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg19_v2_chr12_+_69186125_69186125	0.228133	GLI3	ENST00000399333.3|AC124890.1|ENSG00000251695.2|HCG1774533, isoform CRA_a; PRO2268; Uncharacterized protein
hg19_v2_chr7_-_97501469_97501482	0.22782	GLI3	ENST00000414884.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000442734.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr19_+_38810447_38810529	0.227791	GLI3	ENST00000263372.3|KCNK6|ENSG00000099337.3|potassium channel, subfamily K, member 6
hg19_v2_chr8_-_27462822_27462856	0.227744	GLI3	ENST00000522098.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr14_+_71165292_71165415	0.227706	GLI3	ENST00000553682.1|RP6-65G23.1|ENSG00000258689.1|RP6-65G23.1
hg19_v2_chr9_+_112542591_112542769	0.224376	GLI3	ENST00000483909.1|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000314527.4|PALM2|ENSG00000243444.3|paralemmin 2 	ENST00000413420.1|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000302798.7|PALM2-AKAP2|ENSG00000157654.13|PALM2-AKAP2 readthrough 	ENST00000555236.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2 	ENST00000510514.5|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr8_-_38006272_38006272	0.224287	GLI3	ENST00000522050.1|STAR|ENSG00000147465.7|steroidogenic acute regulatory protein
hg19_v2_chr1_+_247670415_247670426	0.224073	GLI3	ENST00000366491.2|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000366489.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like 	ENST00000526896.1|GCSAML|ENSG00000169224.8|germinal center-associated, signaling and motility-like
hg19_v2_chr5_+_179159813_179159851	0.223698	GLI3	ENST00000292599.3|MAML1|ENSG00000161021.7|mastermind-like 1 (Drosophila)
hg19_v2_chr17_-_79827808_79827882	0.223315	GLI3	ENST00000580685.1|ARHGDIA|ENSG00000141522.7|Rho GDP dissociation inhibitor (GDI) alpha
hg19_v2_chr1_-_155942086_155942145	0.22279	GLI3	ENST00000368315.4|ARHGEF2|ENSG00000116584.13|Rho/Rac guanine nucleotide exchange factor (GEF) 2
hg19_v2_chr1_-_157108130_157108173	0.221514	GLI3	ENST00000368192.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_+_9005917_9005946	0.221503	GLI3	ENST00000549778.1|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000480186.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377443.2|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377436.3|CA6|ENSG00000131686.10|carbonic anhydrase VI 	ENST00000377442.2|CA6|ENSG00000131686.10|carbonic anhydrase VI
hg19_v2_chr12_-_112847354_112847457	0.22121	GLI3	ENST00000550566.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000553213.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000424576.2|RPL6|ENSG00000089009.11|ribosomal protein L6 	ENST00000202773.9|RPL6|ENSG00000089009.11|ribosomal protein L6
hg19_v2_chr10_-_7661623_7661637	0.220824	GLI3	ENST00000298441.6|ITIH5|ENSG00000123243.10|inter-alpha-trypsin inhibitor heavy chain family, member 5
hg19_v2_chr19_+_489140_489179	0.219102	GLI3	ENST00000587541.1|MADCAM1|ENSG00000099866.10|mucosal vascular addressin cell adhesion molecule 1
hg19_v2_chr1_-_35450897_35450954	0.218982	GLI3	ENST00000373337.3|ZMYM6NB|ENSG00000243749.1|ZMYM6 neighbor
hg19_v2_chr1_-_156542328_156542364	0.218051	GLI3	ENST00000361170.2|IQGAP3|ENSG00000183856.6|IQ motif containing GTPase activating protein 3
hg19_v2_chr11_-_61658853_61658932	0.218032	GLI3	ENST00000525588.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3 	ENST00000540820.1|FADS3|ENSG00000221968.4|fatty acid desaturase 3
hg19_v2_chr14_+_103592636_103592664	0.216429	GLI3	ENST00000333007.1|TNFAIP2|ENSG00000185215.4|tumor necrosis factor, alpha-induced protein 2
hg19_v2_chr8_+_41386725_41386757	0.216361	GLI3	ENST00000276533.3|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000520710.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog) 	ENST00000518671.1|GINS4|ENSG00000147536.7|GINS complex subunit 4 (Sld5 homolog)
hg19_v2_chr12_+_111843749_111843763	0.215986	GLI3	ENST00000341259.2|SH2B3|ENSG00000111252.6|SH2B adaptor protein 3
hg19_v2_chr12_-_13248705_13248710	0.215927	GLI3	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr11_-_559377_559393	0.215409	GLI3	ENST00000486629.1|C11orf35|ENSG00000185522.4|chromosome 11 open reading frame 35
hg19_v2_chr19_+_45312347_45312378	0.214833	GLI3	ENST00000270233.6|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group) 	ENST00000591520.1|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group)
hg19_v2_chr19_+_46195895_46195959	0.213652	GLI3	ENST00000366382.4|QPCTL|ENSG00000011478.7|glutaminyl-peptide cyclotransferase-like
hg19_v2_chr7_+_1022811_1022835	0.213606	GLI3	ENST00000308919.7|CYP2W1|ENSG00000073067.9|cytochrome P450, family 2, subfamily W, polypeptide 1
hg19_v2_chr16_+_30937213_30937213	0.213432	GLI3	ENST00000427128.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chrX_+_148863584_148863612	0.212598	GLI3	ENST00000439010.2|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000298974.5|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000522429.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9 	ENST00000519822.1|MAGEA9|ENSG00000166008.5|melanoma antigen family A, 9
hg19_v2_chr19_+_18208603_18208614	0.212348	GLI3	ENST00000262811.6|MAST3|ENSG00000099308.6|microtubule associated serine/threonine kinase 3
hg19_v2_chr5_-_19142450_19142468	0.212135	GLI3	ENST00000504827.1|RP11-124N3.3|ENSG00000249174.1|RP11-124N3.3
hg19_v2_chr17_+_73750699_73750793	0.211087	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.9|integrin, beta 4
hg19_v2_chr5_+_68711023_68711075	0.210973	GLI3	ENST00000515844.1|MARVELD2|ENSG00000152939.10|MARVEL domain containing 2
hg19_v2_chr15_+_45544426_45544451	0.210742	GLI3	ENST00000347644.3|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2 	ENST00000560438.1|SLC28A2|ENSG00000137860.7|solute carrier family 28 (concentrative nucleoside transporter), member 2
hg19_v2_chr6_+_31371337_31371449	0.210174	GLI3	ENST00000449934.2|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A 	ENST00000421350.1|MICA|ENSG00000204520.8|MHC class I polypeptide-related sequence A
hg19_v2_chr17_-_73851285_73851501	0.20974	GLI3	ENST00000589642.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000593002.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000590221.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000344296.4|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000587374.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000585462.1|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000433525.2|WBP2|ENSG00000132471.7|WW domain binding protein 2 	ENST00000254806.3|WBP2|ENSG00000132471.7|WW domain binding protein 2
hg19_v2_chr19_+_41281282_41281363	0.20943	GLI3	ENST00000263369.3|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr1_+_15480197_15480285	0.20895	GLI3	ENST00000400796.3|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000434578.2|TMEM51|ENSG00000171729.9|transmembrane protein 51 	ENST00000376008.2|TMEM51|ENSG00000171729.9|transmembrane protein 51
hg19_v2_chr3_-_43663519_43663560	0.208923	GLI3	ENST00000427171.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000292246.3|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr22_-_50451088_50451199	0.208683	GLI3	ENST00000389983.2|IL17REL|ENSG00000188263.6|interleukin 17 receptor E-like
hg19_v2_chr4_+_17812525_17812648	0.208568	GLI3	ENST00000251496.2|NCAPG|ENSG00000109805.5|non-SMC condensin I complex, subunit G
hg19_v2_chr11_+_44087862_44087904	0.208079	GLI3	ENST00000432284.2|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
hg19_v2_chr16_+_57653989_57654022	0.208031	GLI3	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_+_132568814_132569025	0.207526	GLI3	ENST00000454179.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000389560.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000443539.2|EP400NL|ENSG00000185684.8|EP400 N-terminal like 	ENST00000392352.1|EP400NL|ENSG00000185684.8|EP400 N-terminal like
hg19_v2_chr9_-_80645520_80645520	0.207145	GLI3	ENST00000411677.1|GNAQ|ENSG00000156052.6|guanine nucleotide binding protein (G protein), q polypeptide
hg19_v2_chr19_+_45312310_45312332	0.207107	GLI3	ENST00000589651.1|BCAM|ENSG00000187244.6|basal cell adhesion molecule (Lutheran blood group)
hg19_v2_chr15_-_55790515_55790605	0.206402	GLI3	ENST00000448430.2|DYX1C1|ENSG00000256061.3|dyslexia susceptibility 1 candidate 1 	ENST00000457155.2|DYX1C1|ENSG00000256061.3|dyslexia susceptibility 1 candidate 1
hg19_v2_chr14_+_22984601_22984601	0.206378	GLI3	ENST00000390509.1|TRAJ28|ENSG00000211861.1|T cell receptor alpha joining 28
hg19_v2_chr6_-_33037019_33037047	0.206238	GLI3	ENST00000437811.1|HLA-DPA1|ENSG00000231389.3|major histocompatibility complex, class II, DP alpha 1
hg19_v2_chr4_-_40632757_40632803	0.205615	GLI3	ENST00000511902.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47 	ENST00000505220.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr12_+_72233487_72233563	0.20547	GLI3	ENST00000482439.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000550746.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000491063.1|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000319106.8|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000485960.2|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15 	ENST00000393309.3|TBC1D15|ENSG00000121749.11|TBC1 domain family, member 15
hg19_v2_chr3_-_43663389_43663511	0.205185	GLI3	ENST00000444344.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000456438.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000350459.4|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000396091.3|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000451430.2|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000428472.1|ANO10|ENSG00000160746.8|anoctamin 10 	ENST00000414522.2|ANO10|ENSG00000160746.8|anoctamin 10
hg19_v2_chr17_+_7323634_7323679	0.204809	GLI3	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr18_+_3262415_3262611	0.204227	GLI3	ENST00000581193.1|MYL12B|ENSG00000118680.8|myosin, light chain 12B, regulatory 	ENST00000400175.5|MYL12B|ENSG00000118680.8|myosin, light chain 12B, regulatory
hg19_v2_chr22_+_45559722_45559881	0.203441	GLI3	ENST00000347635.4|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000407019.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000424634.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000417702.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000425733.2|NUP50|ENSG00000093000.14|nucleoporin 50kDa 	ENST00000430547.1|NUP50|ENSG00000093000.14|nucleoporin 50kDa
hg19_v2_chr14_-_101053739_101053767	0.203276	GLI3	ENST00000554140.1|BEGAIN|ENSG00000183092.11|brain-enriched guanylate kinase-associated
hg19_v2_chr1_-_26232522_26232644	0.202958	GLI3	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr16_+_28834303_28834467	0.202491	GLI3	ENST00000340394.8|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000325215.6|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000395547.2|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000336783.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000382686.4|ATXN2L|ENSG00000168488.14|ataxin 2-like 	ENST00000564304.1|ATXN2L|ENSG00000168488.14|ataxin 2-like
hg19_v2_chr6_-_74063979_74064018	0.202398	GLI3	ENST00000370370.3|DPPA5|ENSG00000203909.3|developmental pluripotency associated 5
hg19_v2_chr11_-_111649015_111649030	0.201845	GLI3	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr14_-_25103388_25103415	0.201559	GLI3	ENST00000526004.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000415355.3|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
hg19_v2_chr11_+_122709200_122709215	0.200842	GLI3	ENST00000227348.4|CRTAM|ENSG00000109943.4|cytotoxic and regulatory T cell molecule
hg19_v2_chr20_+_49348081_49348096	0.200341	GLI3	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr17_-_1419941_1419969	0.199027	GLI3	ENST00000498390.1|INPP5K|ENSG00000132376.15|inositol polyphosphate-5-phosphatase K
hg19_v2_chr1_+_240255166_240255197	0.19866	GLI3	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr10_+_17270214_17270258	0.198596	GLI3	ENST00000544301.1|VIM|ENSG00000026025.9|vimentin
hg19_v2_chr1_+_21766588_21766637	0.198359	GLI3	ENST00000454000.2|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318220.6|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3 	ENST00000318249.5|NBPF3|ENSG00000142794.14|neuroblastoma breakpoint family, member 3
hg19_v2_chr20_+_62666902_62667016	0.1968	GLI3	ENST00000431158.1|LINC00176|ENSG00000196421.3|long intergenic non-protein coding RNA 176
hg19_v2_chr2_+_102928009_102928033	0.195737	GLI3	ENST00000404917.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000447231.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr12_-_7848364_7848378	0.195287	GLI3	ENST00000329913.3|GDF3|ENSG00000184344.3|growth differentiation factor 3
hg19_v2_chr11_-_65640071_65640125	0.195175	GLI3	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr17_+_36584662_36584730	0.19498	GLI3	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr19_+_1905365_1905417	0.194882	GLI3	ENST00000329478.2|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3 	ENST00000409472.1|SCAMP4|ENSG00000227500.5|secretory carrier membrane protein 4 	ENST00000602400.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr8_-_27468842_27468878	0.193686	GLI3	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr19_+_15121532_15121556	0.193553	GLI3	ENST00000292574.3|CCDC105|ENSG00000160994.3|coiled-coil domain containing 105
hg19_v2_chr18_+_56807096_56807175	0.193069	GLI3	ENST00000588875.1|SEC11C|ENSG00000166562.4|SEC11 homolog C (S. cerevisiae)
hg19_v2_chr18_+_59992527_59992555	0.192864	GLI3	ENST00000586569.1|TNFRSF11A|ENSG00000141655.11|tumor necrosis factor receptor superfamily, member 11a, NFKB activator
hg19_v2_chr6_-_31324943_31324965	0.192507	GLI3	ENST00000412585.2|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B 	ENST00000434333.1|HLA-B|ENSG00000234745.5|major histocompatibility complex, class I, B
hg19_v2_chr10_-_18948156_18948202	0.19154	GLI3	ENST00000414939.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000449529.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000456217.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1 	ENST00000444660.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr19_+_45417812_45417869	0.19147	GLI3	ENST00000592535.1|APOC1|ENSG00000130208.5|apolipoprotein C-I
hg19_v2_chr16_-_55867146_55867249	0.190561	GLI3	ENST00000422046.2|CES1|ENSG00000198848.8|carboxylesterase 1
hg19_v2_chr3_-_45957088_45957112	0.190268	GLI3	ENST00000539217.1|LZTFL1|ENSG00000163818.12|leucine zipper transcription factor-like 1
hg19_v2_chr19_+_20278043_20278083	0.189864	GLI3	ENST00000335117.8|ZNF486|ENSG00000256229.3|zinc finger protein 486
hg19_v2_chr1_+_202976493_202976530	0.189694	GLI3	ENST00000367242.3|TMEM183A|ENSG00000163444.7|transmembrane protein 183A
hg19_v2_chr13_-_20806440_20806534	0.189216	GLI3	ENST00000400066.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000400065.3|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa 	ENST00000356192.6|GJB6|ENSG00000121742.11|gap junction protein, beta 6, 30kDa
hg19_v2_chr1_-_152386732_152386745	0.188988	GLI3	ENST00000271835.3|CRNN|ENSG00000143536.7|cornulin
hg19_v2_chr19_-_54619006_54619055	0.188521	GLI3	ENST00000391759.1|TFPT|ENSG00000105619.9|TCF3 (E2A) fusion partner (in childhood Leukemia)
hg19_v2_chr2_-_224702257_224702266	0.188444	GLI3	ENST00000409375.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr3_+_57094469_57094469	0.188371	GLI3	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr6_-_26027480_26027522	0.188076	GLI3	ENST00000377364.3|HIST1H4B|ENSG00000124529.3|histone cluster 1, H4b
hg19_v2_chr1_-_120190396_120190396	0.187961	GLI3	ENST00000421812.2|ZNF697|ENSG00000143067.4|zinc finger protein 697
hg19_v2_chr1_+_40505891_40505995	0.187384	GLI3	ENST00000372797.3|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000372802.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast) 	ENST00000449311.1|CAP1|ENSG00000131236.12|CAP, adenylate cyclase-associated protein 1 (yeast)
hg19_v2_chr3_+_44626446_44626477	0.18684	GLI3	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chr11_+_65819802_65819871	0.186555	GLI3	ENST00000528302.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000322535.6|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000524627.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000533595.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa 	ENST00000530322.1|SF3B2|ENSG00000087365.10|splicing factor 3b, subunit 2, 145kDa
hg19_v2_chr19_-_21512144_21512191	0.186537	GLI3	ENST00000602023.1|ZNF708|ENSG00000182141.5|zinc finger protein 708
hg19_v2_chr1_-_206671061_206671061	0.186526	GLI3	ENST00000367119.1|C1orf147|ENSG00000162888.4|chromosome 1 open reading frame 147
hg19_v2_chr19_+_35491174_35491242	0.186434	GLI3	ENST00000317991.5|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A 	ENST00000504615.2|GRAMD1A|ENSG00000089351.10|GRAM domain containing 1A
hg19_v2_chr11_-_65374430_65374497	0.186216	GLI3	ENST00000532507.1|MAP3K11|ENSG00000173327.3|mitogen-activated protein kinase kinase kinase 11
hg19_v2_chr8_+_94752349_94752349	0.185763	GLI3	ENST00000391680.1|RBM12B-AS1|ENSG00000212998.1|RBM12B antisense RNA 1
hg19_v2_chr21_-_33985127_33985191	0.185702	GLI3	ENST00000290155.3|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr11_-_61684962_61685063	0.184814	GLI3	ENST00000394836.2|RAB3IL1|ENSG00000167994.7|RAB3A interacting protein (rabin3)-like 1
hg19_v2_chr11_+_844067_844158	0.18473	GLI3	ENST00000397406.1|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000409543.2|TSPAN4|ENSG00000214063.6|tetraspanin 4 	ENST00000525201.1|TSPAN4|ENSG00000214063.6|tetraspanin 4
hg19_v2_chr20_+_43343476_43343487	0.184548	GLI3	ENST00000372868.2|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr19_+_57791806_57791875	0.182983	GLI3	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr19_-_8155117_8155117	0.18296	GLI3	ENST00000601281.1|FBN3|ENSG00000142449.8|fibrillin 3
hg19_v2_chr3_-_137851220_137851236	0.18255	GLI3	ENST00000236709.3|A4GNT|ENSG00000118017.3|alpha-1,4-N-acetylglucosaminyltransferase
hg19_v2_chr6_+_26204825_26204858	0.18242	GLI3	ENST00000360441.4|HIST1H4E|ENSG00000198518.5|histone cluster 1, H4e
hg19_v2_chrX_-_17878827_17878846	0.182401	GLI3	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr11_-_299519_299533	0.181917	GLI3	ENST00000382614.2|IFITM5|ENSG00000206013.2|interferon induced transmembrane protein 5
hg19_v2_chr5_+_102455853_102455961	0.18164	GLI3	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr1_+_104615595_104615645	0.181379	GLI3	ENST00000418362.1|RP11-364B6.1|ENSG00000215869.3|RP11-364B6.1
hg19_v2_chr11_-_8615507_8615555	0.181187	GLI3	ENST00000431279.2|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000418597.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr12_+_29542557_29542671	0.181121	GLI3	ENST00000550906.1|OVCH1-AS1|ENSG00000257599.1|OVCH1 antisense RNA 1
hg19_v2_chr11_-_407103_407195	0.181098	GLI3	ENST00000526395.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr22_-_25170683_25170683	0.18075	GLI3	ENST00000332271.5|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr11_-_64085533_64085558	0.180704	GLI3	ENST00000544844.1|TRMT112|ENSG00000173113.2|tRNA methyltransferase 11-2 homolog (S. cerevisiae)
hg19_v2_chr10_-_46970573_46970610	0.180081	GLI3	ENST00000374325.3|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chr17_+_73629500_73629532	0.180041	GLI3	ENST00000375215.3|SMIM5|ENSG00000204323.5|small integral membrane protein 5
hg19_v2_chr1_-_111970353_111970399	0.179999	GLI3	ENST00000369732.3|OVGP1|ENSG00000085465.11|oviductal glycoprotein 1, 120kDa
hg19_v2_chr7_-_97501706_97501727	0.179901	GLI3	ENST00000455086.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing) 	ENST00000453600.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr2_+_201981663_201981762	0.179645	GLI3	ENST00000433445.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr1_+_155911480_155911480	0.179561	GLI3	ENST00000368318.3|RXFP4|ENSG00000173080.4|relaxin/insulin-like family peptide receptor 4
hg19_v2_chr17_-_72919317_72919368	0.179452	GLI3	ENST00000319642.1|USH1G|ENSG00000182040.4|Usher syndrome 1G (autosomal recessive)
hg19_v2_chr1_-_139379_139379	0.178574	GLI3	ENST00000423372.3|AL627309.1|ENSG00000237683.5|Uncharacterized protein
hg19_v2_chrX_-_1656000_1656043	0.178492	GLI3	ENST00000381297.4|P2RY8|ENSG00000182162.5|purinergic receptor P2Y, G-protein coupled, 8
hg19_v2_chr4_-_105416039_105416065	0.178279	GLI3	ENST00000394767.2|CXXC4|ENSG00000168772.9|CXXC finger protein 4
hg19_v2_chr16_-_2059797_2059837	0.178039	GLI3	ENST00000563630.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chr6_-_42016385_42016706	0.177829	GLI3	ENST00000502771.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000508143.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000514588.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000510503.1|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000415497.2|CCND3|ENSG00000112576.8|cyclin D3 	ENST00000372988.4|CCND3|ENSG00000112576.8|cyclin D3
hg19_v2_chr11_-_8615488_8615505	0.17723	GLI3	ENST00000315204.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396672.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000396673.1|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr2_+_10560147_10560201	0.176618	GLI3	ENST00000422133.1|HPCAL1|ENSG00000115756.8|hippocalcin-like 1
hg19_v2_chr11_-_8615687_8615711	0.175781	GLI3	ENST00000534493.1|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000422559.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr5_-_157002749_157002768	0.174752	GLI3	ENST00000517905.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000430702.2|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19 	ENST00000394020.1|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr15_+_27516674_27516709	0.173957	GLI3	ENST00000554696.1|GABRG3|ENSG00000182256.8|gamma-aminobutyric acid (GABA) A receptor, gamma 3
hg19_v2_chr5_-_157002775_157002790	0.173508	GLI3	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr19_+_39647271_39647347	0.173446	GLI3	ENST00000599657.1|PAK4|ENSG00000130669.13|p21 protein (Cdc42/Rac)-activated kinase 4
hg19_v2_chr2_+_201981527_201981560	0.173116	GLI3	ENST00000441224.1|CFLAR|ENSG00000003402.15|CASP8 and FADD-like apoptosis regulator
hg19_v2_chr9_-_114937543_114937559	0.173109	GLI3	ENST00000374264.2|SUSD1|ENSG00000106868.12|sushi domain containing 1 	ENST00000374263.3|SUSD1|ENSG00000106868.12|sushi domain containing 1
hg19_v2_chr16_-_57832004_57832027	0.172413	GLI3	ENST00000562503.1|KIFC3|ENSG00000140859.11|kinesin family member C3
hg19_v2_chr9_-_8857776_8857878	0.172402	GLI3	ENST00000481079.1|PTPRD|ENSG00000153707.11|protein tyrosine phosphatase, receptor type, D
hg19_v2_chr16_+_30034655_30034722	0.171789	GLI3	ENST00000300575.2|C16orf92|ENSG00000167194.3|chromosome 16 open reading frame 92
hg19_v2_chr21_-_47613673_47613673	0.170243	GLI3	ENST00000594486.1|AP001468.1|ENSG00000235878.4|Protein LOC101060037
hg19_v2_chr6_-_30685214_30685230	0.169997	GLI3	ENST00000425072.1|MDC1|ENSG00000137337.10|mediator of DNA-damage checkpoint 1
hg19_v2_chr16_+_2880254_2880278	0.169537	GLI3	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr11_+_45907177_45907233	0.169223	GLI3	ENST00000241014.2|MAPK8IP1|ENSG00000121653.7|mitogen-activated protein kinase 8 interacting protein 1
hg19_v2_chr12_+_6602517_6602559	0.169062	GLI3	ENST00000315579.5|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2 	ENST00000539714.1|NCAPD2|ENSG00000010292.8|non-SMC condensin I complex, subunit D2
hg19_v2_chr19_+_41281416_41281452	0.168662	GLI3	ENST00000597140.1|MIA|ENSG00000261857.2|melanoma inhibitory activity
hg19_v2_chr3_+_184081175_184081208	0.168606	GLI3	ENST00000452961.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H 	ENST00000296223.3|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr19_-_29218538_29218684	0.16852	GLI3	ENST00000592347.1|AC005307.3|ENSG00000267243.1|AC005307.3	ENST00000586528.1|AC005307.3|ENSG00000267243.1|AC005307.3
hg19_v2_chr3_-_150421728_150421746	0.168487	GLI3	ENST00000295910.6|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A 	ENST00000491361.1|FAM194A|ENSG00000163645.10|family with sequence similarity 194, member A
hg19_v2_chr19_+_29097595_29097640	0.168215	GLI3	ENST00000587961.1|AC079466.1|ENSG00000266976.1|AC079466.1
hg19_v2_chr20_+_43343886_43344020	0.167781	GLI3	ENST00000190983.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr3_+_101818088_101818088	0.16717	GLI3	ENST00000491959.1|ZPLD1|ENSG00000170044.4|zona pellucida-like domain containing 1
hg19_v2_chr12_-_48151938_48151973	0.167027	GLI3	ENST00000495953.2|RAPGEF3|ENSG00000079337.11|Rap guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr1_+_45205591_45205625	0.166466	GLI3	ENST00000455186.1|KIF2C|ENSG00000142945.8|kinesin family member 2C
hg19_v2_chr10_+_94451574_94451612	0.166254	GLI3	ENST00000492654.2|HHEX|ENSG00000152804.6|hematopoietically expressed homeobox
hg19_v2_chr14_-_21055874_21055890	0.166193	GLI3	ENST00000553849.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chr11_+_89867681_89867697	0.165704	GLI3	ENST00000534061.1|NAALAD2|ENSG00000077616.6|N-acetylated alpha-linked acidic dipeptidase 2
hg19_v2_chr19_+_1248547_1248562	0.1657	GLI3	ENST00000586757.1|MIDN|ENSG00000167470.8|midnolin 	ENST00000300952.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chr19_+_44556158_44556206	0.165546	GLI3	ENST00000434772.3|ZNF223|ENSG00000178386.8|zinc finger protein 223 	ENST00000585552.1|ZNF223|ENSG00000178386.8|zinc finger protein 223
hg19_v2_chr17_-_78120936_78120992	0.165529	GLI3	ENST00000576547.1|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3 	ENST00000269349.3|EIF4A3|ENSG00000141543.5|eukaryotic translation initiation factor 4A3
hg19_v2_chr20_+_31499459_31499459	0.165156	GLI3	ENST00000439060.1|EFCAB8|ENSG00000215529.8|EF-hand calcium binding domain 8
hg19_v2_chr20_+_39765581_39765646	0.164837	GLI3	ENST00000244007.3|PLCG1|ENSG00000124181.10|phospholipase C, gamma 1
hg19_v2_chr1_-_95783809_95783828	0.163666	GLI3	ENST00000423410.1|RP4-586O15.1|ENSG00000228504.1|RP4-586O15.1
hg19_v2_chr2_+_232573208_232573219	0.163301	GLI3	ENST00000409115.3|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr19_-_3869012_3869041	0.162578	GLI3	ENST00000592398.1|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000262961.4|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2 	ENST00000439086.2|ZFR2|ENSG00000105278.6|zinc finger RNA binding protein 2
hg19_v2_chr6_+_35436167_35436194	0.162451	GLI3	ENST00000322203.6|RPL10A|ENSG00000198755.6|ribosomal protein L10a
hg19_v2_chr15_-_64665911_64665980	0.162133	GLI3	ENST00000606793.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000561349.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein  	ENST00000560278.1|CTD-2116N17.1|ENSG00000259316.3|Uncharacterized protein
hg19_v2_chr6_-_85473073_85473114	0.162021	GLI3	ENST00000606621.1|TBX18|ENSG00000112837.12|T-box 18
hg19_v2_chr15_+_42867857_42867884	0.161902	GLI3	ENST00000290607.7|STARD9|ENSG00000159433.7|StAR-related lipid transfer (START) domain containing 9
hg19_v2_chr6_+_133135580_133135711	0.161729	GLI3	ENST00000230050.3|RPS12|ENSG00000112306.7|ribosomal protein S12
hg19_v2_chr14_+_93118813_93118870	0.161696	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.11|Ras and Rab interactor 3
hg19_v2_chr4_+_187812086_187812123	0.161568	GLI3	ENST00000507644.2|RP11-11N5.1|ENSG00000250829.2|RP11-11N5.1
hg19_v2_chr8_+_143761874_143761921	0.161518	GLI3	ENST00000301258.4|PSCA|ENSG00000167653.4|prostate stem cell antigen 	ENST00000513264.1|PSCA|ENSG00000167653.4|prostate stem cell antigen
hg19_v2_chr12_+_54943134_54943182	0.161389	GLI3	ENST00000243052.3|PDE1B|ENSG00000123360.7|phosphodiesterase 1B, calmodulin-dependent
hg19_v2_chr16_-_4817129_4817219	0.161294	GLI3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chrX_-_141293047_141293082	0.161179	GLI3	ENST00000247452.3|MAGEC2|ENSG00000046774.9|melanoma antigen family C, 2
hg19_v2_chr16_+_68573640_68573698	0.161147	GLI3	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr9_+_8858102_8858147	0.160891	GLI3	ENST00000447950.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1	ENST00000430766.1|RP11-75C9.1|ENSG00000225706.1|RP11-75C9.1
hg19_v2_chr17_+_8339189_8339285	0.160789	GLI3	ENST00000585098.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000380025.4|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000402554.3|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000584866.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1 	ENST00000582490.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr19_+_44220247_44220265	0.16044	GLI3	ENST00000596627.1|IRGC|ENSG00000124449.6|immunity-related GTPase family, cinema
hg19_v2_chr2_+_242498135_242498136	0.159926	GLI3	ENST00000318407.3|BOK|ENSG00000176720.3|BCL2-related ovarian killer
hg19_v2_chr19_+_45349630_45349783	0.159655	GLI3	ENST00000252483.5|PVRL2|ENSG00000130202.5|poliovirus receptor-related 2 (herpesvirus entry mediator B)
hg19_v2_chr19_+_23299777_23299844	0.158743	GLI3	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr14_-_25103472_25103483	0.158489	GLI3	ENST00000216341.4|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000382542.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 	ENST00000382540.1|GZMB|ENSG00000100453.8|granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)
hg19_v2_chr3_+_238427_238455	0.158438	GLI3	ENST00000397491.2|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr8_-_131028869_131028918	0.158159	GLI3	ENST00000518283.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B 	ENST00000519110.1|FAM49B|ENSG00000153310.14|family with sequence similarity 49, member B
hg19_v2_chrX_-_48693955_48694035	0.157835	GLI3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr2_+_241564655_241564668	0.157519	GLI3	ENST00000407714.1|GPR35|ENSG00000178623.7|G protein-coupled receptor 35
hg19_v2_chr12_+_41582103_41582250	0.157285	GLI3	ENST00000402685.2|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4
hg19_v2_chr11_-_65641044_65641083	0.157209	GLI3	ENST00000527378.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr22_-_21482352_21482352	0.157202	GLI3	ENST00000329949.3|POM121L7|ENSG00000239511.1|POM121 transmembrane nucleoporin-like 7
hg19_v2_chr6_-_163834852_163834992	0.157163	GLI3	ENST00000604200.1|CAHM|ENSG00000270419.1|colon adenocarcinoma hypermethylated (non-protein coding)
hg19_v2_chr17_+_7621045_7621079	0.156643	GLI3	ENST00000570791.1|DNAH2|ENSG00000183914.10|dynein, axonemal, heavy chain 2
hg19_v2_chr1_+_26605618_26605667	0.156003	GLI3	ENST00000270792.5|SH3BGRL3|ENSG00000142669.9|SH3 domain binding glutamic acid-rich protein like 3
hg19_v2_chr4_+_40194609_40194616	0.15598	GLI3	ENST00000508513.1|RHOH|ENSG00000168421.8|ras homolog family member H
hg19_v2_chr2_+_192110199_192110254	0.155443	GLI3	ENST00000304164.4|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr19_-_4717835_4717900	0.154945	GLI3	ENST00000599248.1|DPP9|ENSG00000142002.12|dipeptidyl-peptidase 9
hg19_v2_chr6_-_80657292_80657301	0.154911	GLI3	ENST00000369816.4|ELOVL4|ENSG00000118402.5|ELOVL fatty acid elongase 4
hg19_v2_chr17_-_61920280_61920425	0.154202	GLI3	ENST00000448276.2|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 	ENST00000577990.1|SMARCD2|ENSG00000108604.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg19_v2_chr6_-_29600832_29600982	0.153856	GLI3	ENST00000377016.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000376977.3|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1 	ENST00000377034.4|GABBR1|ENSG00000204681.6|gamma-aminobutyric acid (GABA) B receptor, 1
hg19_v2_chr17_-_39928106_39928152	0.15361	GLI3	ENST00000540235.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr5_+_175487692_175487692	0.153479	GLI3	ENST00000510151.1|FAM153B|ENSG00000182230.7|family with sequence similarity 153, member B
hg19_v2_chr19_-_20748541_20748568	0.153463	GLI3	ENST00000427401.4|ZNF737|ENSG00000237440.4|zinc finger protein 737 	ENST00000594419.1|ZNF737|ENSG00000237440.4|zinc finger protein 737
hg19_v2_chr9_-_98079154_98079192	0.153283	GLI3	ENST00000433829.1|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr17_+_7487146_7487211	0.153128	GLI3	ENST00000396501.4|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000584378.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000423172.2|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000579445.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000585217.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1 	ENST00000581380.1|MPDU1|ENSG00000129255.10|mannose-P-dolichol utilization defect 1
hg19_v2_chrX_-_152486108_152486123	0.152928	GLI3	ENST00000356661.5|MAGEA1|ENSG00000198681.5|melanoma antigen family A, 1 (directs expression of antigen MZ2-E)
hg19_v2_chr16_-_1031259_1031327	0.152681	GLI3	ENST00000563837.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000570014.1|LMF1|ENSG00000103227.14|lipase maturation factor 1 	ENST00000563863.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2	ENST00000565069.1|RP11-161M6.2|ENSG00000260807.2|RP11-161M6.2
hg19_v2_chr5_-_149792295_149792332	0.152403	GLI3	ENST00000518797.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000524315.1|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000009530.7|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain 	ENST00000377795.3|CD74|ENSG00000019582.10|CD74 molecule, major histocompatibility complex, class II invariant chain
hg19_v2_chr11_-_62066536_62066576	0.152233	GLI3	ENST00000358585.1|SCGB1D4|ENSG00000197745.1|secretoglobin, family 1D, member 4
hg19_v2_chr13_+_85937736_85937755	0.151938	GLI3	ENST00000424926.2|LINC00351|ENSG00000226317.2|long intergenic non-protein coding RNA 351
hg19_v2_chr4_+_74735102_74735121	0.151547	GLI3	ENST00000395761.3|CXCL1|ENSG00000163739.4|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)
hg19_v2_chr5_+_41925325_41925416	0.151317	GLI3	ENST00000296812.2|FBXO4|ENSG00000151876.8|F-box protein 4 	ENST00000281623.3|FBXO4|ENSG00000151876.8|F-box protein 4 	ENST00000509134.1|FBXO4|ENSG00000151876.8|F-box protein 4
hg19_v2_chr7_-_33842742_33842787	0.150922	GLI3	ENST00000420185.1|RP11-89N17.4|ENSG00000236494.1|RP11-89N17.4	ENST00000440034.1|RP11-89N17.4|ENSG00000236494.1|RP11-89N17.4
hg19_v2_chr12_+_65004292_65004306	0.150507	GLI3	ENST00000542104.1|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3 	ENST00000336061.2|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3
hg19_v2_chr8_+_124194752_124194835	0.150486	GLI3	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr2_+_47799601_47799601	0.150213	GLI3	ENST00000601243.1|AC138655.1|ENSG00000269563.1|CDNA: FLJ23120 fis, clone LNG07989; HCG1987724; Uncharacterized protein
hg19_v2_chr14_+_31046959_31046972	0.149993	GLI3	ENST00000547532.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase 	ENST00000555429.1|G2E3|ENSG00000092140.10|G2/M-phase specific E3 ubiquitin protein ligase
hg19_v2_chr14_+_94577074_94577161	0.14975	GLI3	ENST00000444961.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000448882.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557098.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000554800.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000556544.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000298902.5|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555819.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000557634.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27 	ENST00000555744.1|IFI27|ENSG00000165949.8|interferon, alpha-inducible protein 27
hg19_v2_chr4_-_40632881_40632913	0.149106	GLI3	ENST00000511598.1|RBM47|ENSG00000163694.10|RNA binding motif protein 47
hg19_v2_chr17_+_49337881_49337947	0.148653	GLI3	ENST00000225298.7|UTP18|ENSG00000011260.9|UTP18 small subunit (SSU) processome component homolog (yeast)
hg19_v2_chr4_-_96470108_96470130	0.148593	GLI3	ENST00000513796.1|UNC5C|ENSG00000182168.10|unc-5 homolog C (C. elegans)
hg19_v2_chr7_+_89841024_89841094	0.148227	GLI3	ENST00000394626.1|STEAP2|ENSG00000157214.9|STEAP family member 2, metalloreductase
hg19_v2_chr6_-_150212029_150212170	0.147828	GLI3	ENST00000529948.1|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000357183.4|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E 	ENST00000367363.3|RAET1E|ENSG00000164520.7|retinoic acid early transcript 1E
hg19_v2_chr1_+_202183200_202183283	0.147703	GLI3	ENST00000439764.2|LGR6|ENSG00000133067.13|leucine-rich repeat containing G protein-coupled receptor 6
hg19_v2_chrX_+_48242863_48242939	0.147679	GLI3	ENST00000376886.2|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4 	ENST00000375517.3|SSX4|ENSG00000204645.4|synovial sarcoma, X breakpoint 4
hg19_v2_chr7_+_150688083_150688106	0.147364	GLI3	ENST00000297494.3|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr19_-_14992264_14992264	0.147203	GLI3	ENST00000327462.2|OR7A17|ENSG00000185385.2|olfactory receptor, family 7, subfamily A, member 17
hg19_v2_chrX_-_49460578_49460597	0.147053	GLI3	ENST00000376150.3|PAGE1|ENSG00000068985.4|P antigen family, member 1 (prostate associated)
hg19_v2_chr1_+_179561011_179561029	0.147012	GLI3	ENST00000294848.8|TDRD5|ENSG00000162782.11|tudor domain containing 5 	ENST00000444136.1|TDRD5|ENSG00000162782.11|tudor domain containing 5
hg19_v2_chr3_+_11313995_11314071	0.146899	GLI3	ENST00000451513.1|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000435760.1|ATG7|ENSG00000197548.8|autophagy related 7 	ENST00000451830.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr3_-_10052869_10052893	0.146847	GLI3	ENST00000454232.1|AC022007.5|ENSG00000206567.5|AC022007.5
hg19_v2_chr8_+_22857048_22857092	0.146712	GLI3	ENST00000251822.6|RHOBTB2|ENSG00000008853.12|Rho-related BTB domain containing 2
hg19_v2_chr7_-_97501432_97501451	0.146619	GLI3	ENST00000394309.3|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr11_+_111412271_111412283	0.146214	GLI3	ENST00000528102.1|LAYN|ENSG00000204381.7|layilin
hg19_v2_chrX_+_52511925_52511925	0.145764	GLI3	ENST00000375588.1|XAGE1C|ENSG00000183461.12|X antigen family, member 1C
hg19_v2_chr5_+_169931249_169931364	0.145103	GLI3	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr3_+_184081213_184081224	0.144813	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.5|polymerase (RNA) II (DNA directed) polypeptide H
hg19_v2_chr14_+_105452094_105452152	0.144557	GLI3	ENST00000551606.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79 	ENST00000547315.1|C14orf79|ENSG00000140104.9|chromosome 14 open reading frame 79
hg19_v2_chrX_+_1734051_1734068	0.143921	GLI3	ENST00000381229.4|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase 	ENST00000381233.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chr5_-_180236811_180236880	0.143439	GLI3	ENST00000446023.2|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr1_+_113263041_113263041	0.143241	GLI3	ENST00000369630.3|FAM19A3|ENSG00000184599.9|family with sequence similarity 19 (chemokine (C-C motif)-like), member A3
hg19_v2_chr17_+_15848231_15848231	0.143047	GLI3	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr1_+_1567531_1567544	0.142962	GLI3	ENST00000472264.1|MMP23B|ENSG00000189409.8|matrix metallopeptidase 23B
hg19_v2_chr1_+_32671236_32671280	0.14284	GLI3	ENST00000537469.1|IQCC|ENSG00000160051.7|IQ motif containing C 	ENST00000291358.6|IQCC|ENSG00000160051.7|IQ motif containing C
hg19_v2_chr10_+_30722866_30722969	0.142711	GLI3	ENST00000263056.1|MAP3K8|ENSG00000107968.5|mitogen-activated protein kinase kinase kinase 8
hg19_v2_chr7_-_97501411_97501431	0.142081	GLI3	ENST00000437628.1|ASNS|ENSG00000070669.12|asparagine synthetase (glutamine-hydrolyzing)
hg19_v2_chr7_-_2883928_2883993	0.141877	GLI3	ENST00000275364.3|GNA12|ENSG00000146535.9|guanine nucleotide binding protein (G protein) alpha 12
hg19_v2_chr12_+_117099342_117099387	0.141488	GLI3	ENST00000546835.1|RP11-497G19.1|ENSG00000257883.1|RP11-497G19.1
hg19_v2_chrX_+_55246771_55246793	0.14104	GLI3	ENST00000289619.5|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated) 	ENST00000374955.3|PAGE5|ENSG00000158639.7|P antigen family, member 5 (prostate associated)
hg19_v2_chr12_-_120687948_120687971	0.141039	GLI3	ENST00000458477.2|PXN|ENSG00000089159.11|paxillin
hg19_v2_chr19_-_46105411_46105481	0.14075	GLI3	ENST00000323040.4|GPR4|ENSG00000177464.4|G protein-coupled receptor 4 	ENST00000544371.1|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr19_-_42573650_42573726	0.140745	GLI3	ENST00000593562.1|GRIK5|ENSG00000105737.5|glutamate receptor, ionotropic, kainate 5
hg19_v2_chr8_-_144416965_144417066	0.140477	GLI3	ENST00000523676.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000519591.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000522043.1|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial 	ENST00000329245.4|TOP1MT|ENSG00000184428.8|topoisomerase (DNA) I, mitochondrial
hg19_v2_chr11_+_69061594_69061635	0.140277	GLI3	ENST00000441339.2|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000308946.3|MYEOV|ENSG00000172927.3|myeloma overexpressed 	ENST00000535407.1|MYEOV|ENSG00000172927.3|myeloma overexpressed
hg19_v2_chr17_+_38516907_38516907	0.14016	GLI3	ENST00000578774.1|CTD-2267D19.3|ENSG00000266208.1|Uncharacterized protein
hg19_v2_chr3_+_159481988_159482005	0.140115	GLI3	ENST00000472451.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr9_+_130860583_130860742	0.139854	GLI3	ENST00000373064.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr21_-_27945562_27945618	0.139006	GLI3	ENST00000299340.4|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1 	ENST00000435845.2|CYYR1|ENSG00000166265.7|cysteine/tyrosine-rich 1
hg19_v2_chr10_+_6130946_6130960	0.138986	GLI3	ENST00000379888.4|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr21_+_48055527_48055608	0.138871	GLI3	ENST00000397638.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000458387.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000451211.2|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000291705.6|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397637.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000334494.4|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000397628.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2 	ENST00000440086.1|PRMT2|ENSG00000160310.12|protein arginine methyltransferase 2
hg19_v2_chr17_+_16593539_16593639	0.138854	GLI3	ENST00000340621.5|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000399273.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000443444.2|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000360524.8|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A 	ENST00000456009.1|CCDC144A|ENSG00000170160.12|coiled-coil domain containing 144A
hg19_v2_chr16_-_71918033_71918107	0.138664	GLI3	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr12_-_57634475_57634532	0.138536	GLI3	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr17_-_4463856_4463896	0.138457	GLI3	ENST00000574584.1|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6 	ENST00000381550.3|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6 	ENST00000301395.3|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6
hg19_v2_chr1_-_47082495_47082563	0.138444	GLI3	ENST00000545730.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000531769.1|MKNK1|ENSG00000079277.15|MAP kinase interacting serine/threonine kinase 1 	ENST00000319928.3|MOB3C|ENSG00000142961.10|MOB kinase activator 3C
hg19_v2_chrX_+_135618258_135618354	0.138156	GLI3	ENST00000440515.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila) 	ENST00000456412.1|VGLL1|ENSG00000102243.8|vestigial like 1 (Drosophila)
hg19_v2_chr12_+_6308881_6309041	0.138111	GLI3	ENST00000382518.1|CD9|ENSG00000010278.7|CD9 molecule 	ENST00000536586.1|CD9|ENSG00000010278.7|CD9 molecule
hg19_v2_chr7_+_38217920_38218003	0.137783	GLI3	ENST00000396013.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000440144.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000453225.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like 	ENST00000429075.1|STARD3NL|ENSG00000010270.9|STARD3 N-terminal like
hg19_v2_chr1_+_22379120_22379177	0.137759	GLI3	ENST00000400259.1|CDC42|ENSG00000070831.11|cell division cycle 42 	ENST00000344548.3|CDC42|ENSG00000070831.11|cell division cycle 42
hg19_v2_chr1_+_155278625_155278745	0.137742	GLI3	ENST00000368356.4|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase 	ENST00000356657.6|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr3_-_135915146_135915194	0.137398	GLI3	ENST00000473093.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr17_-_47286579_47286624	0.13721	GLI3	ENST00000515635.1|GNGT2|ENSG00000167083.2|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
hg19_v2_chr8_-_29120580_29120596	0.136181	GLI3	ENST00000524189.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr3_+_108308513_108308558	0.135872	GLI3	ENST00000361582.3|DZIP3|ENSG00000198919.8|DAZ interacting zinc finger protein 3
hg19_v2_chr10_-_77161004_77161176	0.135751	GLI3	ENST00000418818.2|RP11-399K21.11|ENSG00000270087.1|RP11-399K21.11
hg19_v2_chr8_+_140943416_140943416	0.135416	GLI3	ENST00000507535.3|C8orf17|ENSG00000250733.3|chromosome 8 open reading frame 17
hg19_v2_chr11_+_64052692_64052747	0.135195	GLI3	ENST00000377702.4|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr10_+_49892904_49892925	0.134834	GLI3	ENST00000360890.2|WDFY4|ENSG00000128815.13|WDFY family member 4
hg19_v2_chr2_+_232573222_232573249	0.134608	GLI3	ENST00000341369.7|PTMA|ENSG00000187514.10|prothymosin, alpha 	ENST00000409683.1|PTMA|ENSG00000187514.10|prothymosin, alpha
hg19_v2_chr11_+_65029421_65029459	0.133619	GLI3	ENST00000541089.1|POLA2|ENSG00000014138.4|polymerase (DNA directed), alpha 2, accessory subunit
hg19_v2_chr1_+_25664408_25664408	0.133559	GLI3	ENST00000374358.4|TMEM50A|ENSG00000183726.6|transmembrane protein 50A
hg19_v2_chr12_+_123464607_123464873	0.133046	GLI3	ENST00000543566.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000315580.5|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000542099.1|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000392435.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000413381.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000426960.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4 	ENST00000453766.2|ARL6IP4|ENSG00000182196.9|ADP-ribosylation-like factor 6 interacting protein 4
hg19_v2_chr8_-_37411648_37411701	0.131672	GLI3	ENST00000519738.1|RP11-150O12.1|ENSG00000253161.1|RP11-150O12.1
hg19_v2_chr5_+_154238149_154238267	0.131548	GLI3	ENST00000519430.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000520671.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000521583.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518028.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519404.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000519394.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8 	ENST00000518775.1|CNOT8|ENSG00000155508.9|CCR4-NOT transcription complex, subunit 8
hg19_v2_chr10_+_43633914_43633935	0.131049	GLI3	ENST00000374466.3|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2 	ENST00000374464.1|CSGALNACT2|ENSG00000169826.6|chondroitin sulfate N-acetylgalactosaminyltransferase 2
hg19_v2_chr2_+_127656486_127656495	0.130498	GLI3	ENST00000568484.1|AC114783.1|ENSG00000237524.3|Protein LOC339760  	ENST00000450035.1|AC114783.1|ENSG00000237524.3|Protein LOC339760
hg19_v2_chr2_+_171673072_171673225	0.130085	GLI3	ENST00000358196.3|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa) 	ENST00000375272.1|GAD1|ENSG00000128683.9|glutamate decarboxylase 1 (brain, 67kDa)
hg19_v2_chr3_-_176914963_176914980	0.129229	GLI3	ENST00000450267.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000431674.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr2_-_233286046_233286171	0.128979	GLI3	ENST00000437095.1|AC068134.6|ENSG00000237087.1|AC068134.6
hg19_v2_chr18_-_31803435_31803515	0.128958	GLI3	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr1_-_243418621_243418648	0.128899	GLI3	ENST00000366544.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa 	ENST00000366543.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr9_+_139871948_139871968	0.128563	GLI3	ENST00000224167.2|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000457950.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371625.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain) 	ENST00000371623.3|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chr17_-_7137857_7137869	0.128108	GLI3	ENST00000005340.5|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr11_-_88070920_88070955	0.12801	GLI3	ENST00000524463.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000227266.5|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr12_+_129028500_129028500	0.127564	GLI3	ENST00000315208.8|TMEM132C|ENSG00000181234.8|transmembrane protein 132C
hg19_v2_chr5_-_149516966_149517000	0.127196	GLI3	ENST00000517957.1|PDGFRB|ENSG00000113721.9|platelet-derived growth factor receptor, beta polypeptide
hg19_v2_chr12_-_54778471_54778528	0.12661	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000394313.2|ZNF385A|ENSG00000161642.13|zinc finger protein 385A 	ENST00000547210.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr19_-_16653226_16653275	0.126344	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr5_-_79551858_79551907	0.126016	GLI3	ENST00000507668.2|SERINC5|ENSG00000164300.11|serine incorporator 5 	ENST00000512721.1|SERINC5|ENSG00000164300.11|serine incorporator 5
hg19_v2_chr9_+_131218698_131218750	0.125789	GLI3	ENST00000434106.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000546203.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000446274.1|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000421776.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2 	ENST00000432065.2|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chrX_-_78622805_78622877	0.125639	GLI3	ENST00000373298.2|ITM2A|ENSG00000078596.6|integral membrane protein 2A
hg19_v2_chr15_+_75487984_75488019	0.125588	GLI3	ENST00000563905.1|C15orf39|ENSG00000167173.14|chromosome 15 open reading frame 39
hg19_v2_chr21_+_37477164_37477179	0.125495	GLI3	ENST00000422473.1|AP000688.29|ENSG00000233393.1|AP000688.29
hg19_v2_chr20_-_13619550_13619587	0.125234	GLI3	ENST00000455532.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000544472.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000539805.1|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1 	ENST00000337743.4|TASP1|ENSG00000089123.11|taspase, threonine aspartase, 1
hg19_v2_chr3_+_159481464_159481502	0.124991	GLI3	ENST00000467377.1|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr9_+_97021572_97021615	0.124915	GLI3	ENST00000395395.2|ZNF169|ENSG00000175787.12|zinc finger protein 169 	ENST00000340911.4|ZNF169|ENSG00000175787.12|zinc finger protein 169
hg19_v2_chr11_+_63273811_63273835	0.124665	GLI3	ENST00000340246.5|LGALS12|ENSG00000133317.10|lectin, galactoside-binding, soluble, 12
hg19_v2_chr2_-_24308051_24308085	0.1238	GLI3	ENST00000238721.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3 	ENST00000335934.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr3_-_176915036_176915047	0.123165	GLI3	ENST00000427349.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000352800.5|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr17_-_34808047_34808104	0.123131	GLI3	ENST00000592614.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000591542.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000400684.4|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000330458.7|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000341264.6|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G 	ENST00000592987.1|TBC1D3G|ENSG00000161583.12|TBC1 domain family, member 3G
hg19_v2_chr17_-_2207062_2207116	0.122941	GLI3	ENST00000263073.6|SMG6|ENSG00000070366.9|SMG6 nonsense mediated mRNA decay factor
hg19_v2_chr12_+_51632638_51632665	0.122914	GLI3	ENST00000549732.2|DAZAP2|ENSG00000183283.11|DAZ associated protein 2
hg19_v2_chr1_+_11866270_11866317	0.12273	GLI3	ENST00000376497.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376487.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000376496.3|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr7_+_66386204_66386249	0.12242	GLI3	ENST00000341567.4|TMEM248|ENSG00000106609.12|transmembrane protein 248 	ENST00000607045.1|TMEM248|ENSG00000106609.12|transmembrane protein 248
hg19_v2_chr7_+_2687173_2687337	0.122415	GLI3	ENST00000403167.1|TTYH3|ENSG00000136295.10|tweety family member 3
hg19_v2_chr7_+_150688166_150688192	0.122083	GLI3	ENST00000461406.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr21_-_33984456_33984726	0.122054	GLI3	ENST00000431216.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000553001.1|AP000275.65|ENSG00000265590.5|Uncharacterized protein  	ENST00000440966.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr5_-_132113063_132113082	0.121402	GLI3	ENST00000378719.2|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr12_-_54778444_54778457	0.121137	GLI3	ENST00000551771.1|ZNF385A|ENSG00000161642.13|zinc finger protein 385A
hg19_v2_chr2_+_111490161_111490216	0.12073	GLI3	ENST00000340561.4|ACOXL|ENSG00000153093.14|acyl-CoA oxidase-like
hg19_v2_chr9_+_131873227_131873243	0.120598	GLI3	ENST00000358994.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000455292.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr7_+_2636522_2636546	0.120582	GLI3	ENST00000423196.1|IQCE|ENSG00000106012.13|IQ motif containing E
hg19_v2_chr16_+_2564254_2564305	0.120466	GLI3	ENST00000565223.1|ATP6V0C|ENSG00000185883.6|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c
hg19_v2_chr2_-_171627269_171627285	0.120419	GLI3	ENST00000442456.1|AC007405.4|ENSG00000234350.1|AC007405.4
hg19_v2_chr3_-_15469045_15469056	0.120309	GLI3	ENST00000450816.2|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr22_-_50051151_50051190	0.120304	GLI3	ENST00000400023.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34 	ENST00000444628.1|C22orf34|ENSG00000188511.8|chromosome 22 open reading frame 34
hg19_v2_chr7_+_149411860_149411892	0.120258	GLI3	ENST00000486744.1|KRBA1|ENSG00000133619.13|KRAB-A domain containing 1
hg19_v2_chr5_-_180237445_180237462	0.119094	GLI3	ENST00000393340.3|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr11_+_13690200_13690244	0.118878	GLI3	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr1_+_243419306_243419422	0.118718	GLI3	ENST00000355875.4|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000391846.1|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000366541.3|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8 	ENST00000343783.6|SDCCAG8|ENSG00000054282.11|serologically defined colon cancer antigen 8
hg19_v2_chr19_-_49015050_49015111	0.117966	GLI3	ENST00000600059.1|LMTK3|ENSG00000142235.4|lemur tyrosine kinase 3
hg19_v2_chr11_+_68451943_68451986	0.117959	GLI3	ENST00000265643.3|GAL|ENSG00000069482.6|galanin/GMAP prepropeptide
hg19_v2_chr5_-_39270725_39270771	0.117023	GLI3	ENST00000512138.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000512982.1|FYB|ENSG00000082074.11|FYN binding protein 	ENST00000540520.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr13_-_52733980_52734002	0.116735	GLI3	ENST00000339406.3|NEK3|ENSG00000136098.12|NIMA-related kinase 3
hg19_v2_chr20_-_62199427_62199427	0.116721	GLI3	ENST00000427522.2|HELZ2|ENSG00000130589.12|helicase with zinc finger 2, transcriptional coactivator
hg19_v2_chr19_-_49121054_49121145	0.116556	GLI3	ENST00000546623.1|RPL18|ENSG00000063177.8|ribosomal protein L18 	ENST00000084795.5|RPL18|ENSG00000063177.8|ribosomal protein L18
hg19_v2_chr11_-_12030629_12030644	0.116243	GLI3	ENST00000396505.2|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr9_+_33264861_33264940	0.116039	GLI3	ENST00000223500.8|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr18_+_2655692_2655737	0.115862	GLI3	ENST00000320876.6|SMCHD1|ENSG00000101596.10|structural maintenance of chromosomes flexible hinge domain containing 1
hg19_v2_chr15_+_78632666_78632701	0.115804	GLI3	ENST00000299529.6|CRABP1|ENSG00000166426.7|cellular retinoic acid binding protein 1
hg19_v2_chr1_+_32479430_32479597	0.115571	GLI3	ENST00000327300.7|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1 	ENST00000492989.1|KHDRBS1|ENSG00000121774.13|KH domain containing, RNA binding, signal transduction associated 1
hg19_v2_chr11_-_414948_415017	0.115348	GLI3	ENST00000530494.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528209.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000431843.2|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain 	ENST00000528058.1|SIGIRR|ENSG00000185187.8|single immunoglobulin and toll-interleukin 1 receptor (TIR) domain
hg19_v2_chr7_+_100187196_100187252	0.115016	GLI3	ENST00000468962.1|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000427939.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr22_-_25170444_25170444	0.114888	GLI3	ENST00000533313.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3 	ENST00000527701.1|PIWIL3|ENSG00000184571.9|piwi-like RNA-mediated gene silencing 3
hg19_v2_chr9_-_98279241_98279339	0.114843	GLI3	ENST00000437951.1|PTCH1|ENSG00000185920.11|patched 1 	ENST00000375274.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000430669.2|PTCH1|ENSG00000185920.11|patched 1 	ENST00000468211.2|PTCH1|ENSG00000185920.11|patched 1
hg19_v2_chr8_-_37411585_37411639	0.114351	GLI3	ENST00000517363.1|RP11-150O12.1|ENSG00000253161.1|RP11-150O12.1
hg19_v2_chr5_-_169816638_169816681	0.114267	GLI3	ENST00000521859.1|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1 	ENST00000274629.4|KCNMB1|ENSG00000145936.4|potassium large conductance calcium-activated channel, subfamily M, beta member 1
hg19_v2_chr9_+_131218336_131218366	0.114245	GLI3	ENST00000372814.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr3_-_139199565_139199582	0.114011	GLI3	ENST00000511956.1|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr9_+_131219179_131219198	0.113998	GLI3	ENST00000372791.3|ODF2|ENSG00000136811.12|outer dense fiber of sperm tails 2
hg19_v2_chr8_-_1922789_1922822	0.113867	GLI3	ENST00000521498.1|RP11-439C15.4|ENSG00000253764.1|RP11-439C15.4
hg19_v2_chr12_-_51785083_51785093	0.113761	GLI3	ENST00000603563.1|GALNT6|ENSG00000139629.11|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
hg19_v2_chr7_+_44084262_44084332	0.113697	GLI3	ENST00000456905.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000440166.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000452943.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000468694.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000494774.1|DBNL|ENSG00000136279.14|drebrin-like 	ENST00000490734.2|DBNL|ENSG00000136279.14|drebrin-like
hg19_v2_chr17_-_4464081_4464113	0.113645	GLI3	ENST00000574154.1|GGT6|ENSG00000167741.6|gamma-glutamyltransferase 6
hg19_v2_chr17_+_40440094_40440190	0.113594	GLI3	ENST00000546010.2|STAT5A|ENSG00000126561.12|signal transducer and activator of transcription 5A
hg19_v2_chr20_+_43343517_43343580	0.113383	GLI3	ENST00000372865.4|WISP2|ENSG00000064205.6|WNT1 inducible signaling pathway protein 2
hg19_v2_chr17_-_36348610_36348666	0.113228	GLI3	ENST00000339023.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3 	ENST00000354664.4|TBC1D3|ENSG00000197681.8|TBC1 domain family, member 3
hg19_v2_chr10_+_27444268_27444301	0.113169	GLI3	ENST00000375940.4|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like 	ENST00000342386.6|MASTL|ENSG00000120539.10|microtubule associated serine/threonine kinase-like
hg19_v2_chr19_+_11350278_11350302	0.112959	GLI3	ENST00000252453.8|C19orf80|ENSG00000130173.9|chromosome 19 open reading frame 80
hg19_v2_chr16_-_2379688_2379725	0.112544	GLI3	ENST00000567910.1|ABCA3|ENSG00000167972.9|ATP-binding cassette, sub-family A (ABC1), member 3
hg19_v2_chr5_-_43412418_43412499	0.111727	GLI3	ENST00000537013.1|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28 	ENST00000361115.4|CCL28|ENSG00000151882.7|chemokine (C-C motif) ligand 28
hg19_v2_chr3_-_51909600_51909619	0.111724	GLI3	ENST00000446461.1|IQCF5|ENSG00000214681.3|IQ motif containing F5
hg19_v2_chr7_-_91808845_91808845	0.111691	GLI3	ENST00000343318.5|LRRD1|ENSG00000240720.3|leucine-rich repeats and death domain containing 1
hg19_v2_chr12_+_125549925_125549956	0.111379	GLI3	ENST00000316519.6|AACS|ENSG00000081760.12|acetoacetyl-CoA synthetase
hg19_v2_chr20_-_18477862_18477890	0.111145	GLI3	ENST00000337227.4|RBBP9|ENSG00000089050.10|retinoblastoma binding protein 9
hg19_v2_chr16_-_18801582_18801630	0.111141	GLI3	ENST00000565420.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr11_+_89764274_89764274	0.110954	GLI3	ENST00000448984.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C 	ENST00000432771.1|TRIM49C|ENSG00000204449.2|tripartite motif containing 49C
hg19_v2_chr20_+_34129770_34129879	0.110921	GLI3	ENST00000348547.2|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000357394.4|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000447986.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000279052.6|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000416206.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000411577.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3 	ENST00000413587.1|ERGIC3|ENSG00000125991.14|ERGIC and golgi 3
hg19_v2_chr1_+_155278539_155278559	0.110488	GLI3	ENST00000447866.1|FDPS|ENSG00000160752.10|farnesyl diphosphate synthase
hg19_v2_chr1_-_85358850_85358906	0.109804	GLI3	ENST00000370611.3|LPAR3|ENSG00000171517.5|lysophosphatidic acid receptor 3
hg19_v2_chr1_-_154458520_154458520	0.1097	GLI3	ENST00000486773.1|SHE|ENSG00000169291.5|Src homology 2 domain containing E
hg19_v2_chr3_-_44465475_44465500	0.109493	GLI3	ENST00000416124.1|LINC00694|ENSG00000225873.1|long intergenic non-protein coding RNA 694
hg19_v2_chr2_-_24307635_24307660	0.109252	GLI3	ENST00000313482.4|TP53I3|ENSG00000115129.9|tumor protein p53 inducible protein 3
hg19_v2_chr19_+_1908013_1908035	0.108639	GLI3	ENST00000454697.1|ADAT3|ENSG00000213638.4|adenosine deaminase, tRNA-specific 3
hg19_v2_chr10_+_79626633_79626633	0.108573	GLI3	ENST00000372387.1|AL391421.1|ENSG00000204049.1|Uncharacterized protein; cDNA FLJ43696 fis, clone TBAES2007964
hg19_v2_chr19_+_19779619_19779670	0.108321	GLI3	ENST00000444249.2|ZNF101|ENSG00000181896.7|zinc finger protein 101 	ENST00000592502.1|ZNF101|ENSG00000181896.7|zinc finger protein 101
hg19_v2_chr22_+_20905286_20905316	0.108215	GLI3	ENST00000428629.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr10_+_6130966_6131047	0.108074	GLI3	ENST00000437845.2|RBM17|ENSG00000134453.11|RNA binding motif protein 17 	ENST00000432931.1|RBM17|ENSG00000134453.11|RNA binding motif protein 17
hg19_v2_chr17_+_79981144_79981202	0.107959	GLI3	ENST00000306688.3|LRRC45|ENSG00000169683.3|leucine rich repeat containing 45
hg19_v2_chr8_+_98656336_98656535	0.10773	GLI3	ENST00000336273.3|MTDH|ENSG00000147649.5|metadherin
hg19_v2_chr11_-_65363259_65363279	0.107509	GLI3	ENST00000342202.4|KCNK7|ENSG00000173338.8|potassium channel, subfamily K, member 7
hg19_v2_chr10_-_135171510_135171544	0.107117	GLI3	ENST00000278025.4|FUOM|ENSG00000148803.7|fucose mutarotase 	ENST00000368552.3|FUOM|ENSG00000148803.7|fucose mutarotase
hg19_v2_chr19_+_5455421_5455447	0.106143	GLI3	ENST00000222033.4|ZNRF4|ENSG00000105428.4|zinc and ring finger 4
hg19_v2_chr17_+_8339340_8339412	0.106093	GLI3	ENST00000580012.1|NDEL1|ENSG00000166579.11|nudE neurodevelopment protein 1-like 1
hg19_v2_chr21_-_37432764_37432831	0.106059	GLI3	ENST00000399212.1|SETD4|ENSG00000185917.9|SET domain containing 4 	ENST00000446166.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr5_+_125967372_125967417	0.105966	GLI3	ENST00000357147.3|C5orf48|ENSG00000196900.4|chromosome 5 open reading frame 48
hg19_v2_chr11_+_5712234_5712264	0.105937	GLI3	ENST00000414641.1|TRIM22|ENSG00000132274.11|tripartite motif containing 22
hg19_v2_chr22_+_39410088_39410088	0.105677	GLI3	ENST00000361441.4|APOBEC3C|ENSG00000244509.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
hg19_v2_chr15_+_63569731_63569783	0.105133	GLI3	ENST00000261879.5|APH1B|ENSG00000138613.9|APH1B gamma secretase subunit
hg19_v2_chr18_-_31803169_31803169	0.104804	GLI3	ENST00000590712.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr2_-_62081254_62081278	0.104565	GLI3	ENST00000405894.3|FAM161A|ENSG00000170264.8|family with sequence similarity 161, member A
hg19_v2_chr8_+_29953163_29953190	0.104044	GLI3	ENST00000518192.1|LEPROTL1|ENSG00000104660.13|leptin receptor overlapping transcript-like 1
hg19_v2_chr19_-_17185848_17186010	0.103957	GLI3	ENST00000593360.1|HAUS8|ENSG00000131351.10|HAUS augmin-like complex, subunit 8
hg19_v2_chr1_-_204380919_204380953	0.102904	GLI3	ENST00000367188.4|PPP1R15B|ENSG00000158615.8|protein phosphatase 1, regulatory subunit 15B
hg19_v2_chr15_-_78933567_78933604	0.102668	GLI3	ENST00000261751.3|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal) 	ENST00000412074.2|CHRNB4|ENSG00000117971.7|cholinergic receptor, nicotinic, beta 4 (neuronal)
hg19_v2_chr9_+_33265011_33265059	0.102641	GLI3	ENST00000419016.2|CHMP5|ENSG00000086065.9|charged multivesicular body protein 5
hg19_v2_chr4_-_89080003_89080075	0.102236	GLI3	ENST00000237612.3|ABCG2|ENSG00000118777.6|ATP-binding cassette, sub-family G (WHITE), member 2
hg19_v2_chr3_-_176914998_176915021	0.101656	GLI3	ENST00000431421.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000422066.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000413084.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
hg19_v2_chr15_-_33447055_33447241	0.101278	GLI3	ENST00000559047.1|FMN1|ENSG00000248905.4|formin 1 	ENST00000561249.1|FMN1|ENSG00000248905.4|formin 1
hg19_v2_chr15_-_77712477_77712499	0.100939	GLI3	ENST00000560626.2|PEAK1|ENSG00000173517.6|pseudopodium-enriched atypical kinase 1
hg19_v2_chr7_+_73624276_73624311	0.10086	GLI3	ENST00000475494.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2 	ENST00000398475.1|LAT2|ENSG00000086730.12|linker for activation of T cells family, member 2
hg19_v2_chr12_-_54813229_54813273	0.100683	GLI3	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr2_-_62081148_62081204	0.10034	GLI3	ENST00000404929.1|FAM161A|ENSG00000170264.8|family with sequence similarity 161, member A
hg19_v2_chr11_-_506739_506821	0.10012	GLI3	ENST00000529306.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000438658.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000527485.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397615.2|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1 	ENST00000397614.1|RNH1|ENSG00000023191.12|ribonuclease/angiogenin inhibitor 1
hg19_v2_chr9_+_124413873_124413969	0.100025	GLI3	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr9_-_98079965_98080008	0.0999392	GLI3	ENST00000289081.3|FANCC|ENSG00000158169.7|Fanconi anemia, complementation group C
hg19_v2_chr6_-_166582107_166582188	0.0996198	GLI3	ENST00000296946.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000461348.2|T|ENSG00000164458.5|T, brachyury homolog (mouse) 	ENST00000366871.3|T|ENSG00000164458.5|T, brachyury homolog (mouse)
hg19_v2_chr11_-_88070896_88070917	0.0995817	GLI3	ENST00000529974.1|CTSC|ENSG00000109861.11|cathepsin C 	ENST00000527018.1|CTSC|ENSG00000109861.11|cathepsin C
hg19_v2_chr11_+_118842417_118842477	0.0993646	GLI3	ENST00000317011.3|FOXR1|ENSG00000176302.8|forkhead box R1
hg19_v2_chr8_-_145980968_145980996	0.0991754	GLI3	ENST00000292562.7|ZNF251|ENSG00000198169.4|zinc finger protein 251
hg19_v2_chr17_-_46692287_46692317	0.0989803	GLI3	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr3_+_14166440_14166541	0.0988701	GLI3	ENST00000306077.4|TMEM43|ENSG00000170876.7|transmembrane protein 43
hg19_v2_chr1_-_11866034_11866115	0.0987857	GLI3	ENST00000376590.3|MTHFR|ENSG00000177000.6|methylenetetrahydrofolate reductase (NAD(P)H)
hg19_v2_chr17_+_4736627_4736720	0.0986297	GLI3	ENST00000355280.6|MINK1|ENSG00000141503.11|misshapen-like kinase 1 	ENST00000347992.7|MINK1|ENSG00000141503.11|misshapen-like kinase 1
hg19_v2_chr12_-_96429423_96429439	0.0985614	GLI3	ENST00000228740.2|LTA4H|ENSG00000111144.5|leukotriene A4 hydrolase
hg19_v2_chr12_-_57030096_57030106	0.0981356	GLI3	ENST00000549506.1|BAZ2A|ENSG00000076108.7|bromodomain adjacent to zinc finger domain, 2A
hg19_v2_chr7_-_100860851_100860954	0.0980985	GLI3	ENST00000223127.3|PLOD3|ENSG00000106397.7|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
hg19_v2_chr21_-_33984865_33984883	0.0970859	GLI3	ENST00000458138.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr17_+_36283971_36284016	0.0970761	GLI3	ENST00000327454.6|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F 	ENST00000378174.5|TBC1D3F|ENSG00000185128.11|TBC1 domain family, member 3F
hg19_v2_chr9_-_114937676_114937698	0.0969943	GLI3	ENST00000374270.3|SUSD1|ENSG00000106868.12|sushi domain containing 1
hg19_v2_chr2_+_131369054_131369054	0.0966478	GLI3	ENST00000409602.1|POTEJ|ENSG00000222038.3|POTE ankyrin domain family, member J
hg19_v2_chr11_+_32851487_32851496	0.0961196	GLI3	ENST00000257836.3|PRRG4|ENSG00000135378.3|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
hg19_v2_chr17_+_7210898_7210918	0.096056	GLI3	ENST00000572815.1|EIF5A|ENSG00000132507.13|eukaryotic translation initiation factor 5A
hg19_v2_chr11_-_64511575_64511650	0.095861	GLI3	ENST00000431822.1|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000377486.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated) 	ENST00000394432.3|RASGRP2|ENSG00000068831.14|RAS guanyl releasing protein 2 (calcium and DAG-regulated)
hg19_v2_chr14_+_101292445_101292485	0.0957458	GLI3	ENST00000429159.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000520714.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000522771.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000424076.3|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000423456.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000521404.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000556736.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000451743.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000398518.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000554639.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000452120.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000519709.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding) 	ENST00000412736.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr19_+_33622996_33623026	0.0954784	GLI3	ENST00000592765.1|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000361680.2|WDR88|ENSG00000166359.6|WD repeat domain 88 	ENST00000355868.3|WDR88|ENSG00000166359.6|WD repeat domain 88
hg19_v2_chr8_+_47834174_47834213	0.0953823	GLI3	ENST00000524012.1|RP11-350F16.1|ENSG00000253745.1|RP11-350F16.1
hg19_v2_chr17_-_42200996_42201070	0.0953638	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000225983.6|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000393622.2|HDAC5|ENSG00000108840.11|histone deacetylase 5 	ENST00000588703.1|HDAC5|ENSG00000108840.11|histone deacetylase 5
hg19_v2_chrX_-_138287168_138287192	0.0952523	GLI3	ENST00000436198.1|FGF13|ENSG00000129682.9|fibroblast growth factor 13
hg19_v2_chr13_+_20532900_20532923	0.0951724	GLI3	ENST00000382871.2|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr1_-_86861936_86862023	0.0951205	GLI3	ENST00000394733.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000359242.3|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000294678.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000479890.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000317336.7|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000370567.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000394731.1|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000478286.2|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like 	ENST00000370566.3|ODF2L|ENSG00000122417.11|outer dense fiber of sperm tails 2-like
hg19_v2_chr11_+_64052944_64052986	0.0942494	GLI3	ENST00000535675.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137 	ENST00000543383.1|GPR137|ENSG00000173264.9|G protein-coupled receptor 137
hg19_v2_chr8_-_119634141_119634234	0.0938718	GLI3	ENST00000409003.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526328.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000314727.4|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12 	ENST00000526765.1|SAMD12|ENSG00000177570.9|sterile alpha motif domain containing 12
hg19_v2_chr13_+_20532848_20532890	0.0925866	GLI3	ENST00000382874.2|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr17_-_39324424_39324474	0.0925201	GLI3	ENST00000391356.2|KRTAP4-3|ENSG00000196156.3|keratin associated protein 4-3
hg19_v2_chr7_+_106809406_106809460	0.0923683	GLI3	ENST00000468410.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000478930.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000464009.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000222574.4|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr6_+_116601265_116601288	0.0921098	GLI3	ENST00000452085.3|DSE|ENSG00000111817.12|dermatan sulfate epimerase
hg19_v2_chr7_-_92465868_92465922	0.0920781	GLI3	ENST00000424848.2|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr17_+_17942684_17942784	0.0920461	GLI3	ENST00000376345.3|GID4|ENSG00000141034.5|GID complex subunit 4
hg19_v2_chrY_-_25345070_25345241	0.0918056	GLI3	ENST00000382510.4|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000426000.2|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000540248.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1 	ENST00000405239.1|DAZ1|ENSG00000188120.10|deleted in azoospermia 1
hg19_v2_chr16_+_84209738_84209748	0.0916558	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.13|dynein, axonemal, assembly factor 1
hg19_v2_chr15_-_101817616_101817710	0.0908864	GLI3	ENST00000526049.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000398226.3|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000537379.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr12_-_9102224_9102331	0.0907407	GLI3	ENST00000543845.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent) 	ENST00000544245.1|M6PR|ENSG00000003056.3|mannose-6-phosphate receptor (cation dependent)
hg19_v2_chr3_-_179169330_179169384	0.0905989	GLI3	ENST00000232564.3|GNB4|ENSG00000114450.5|guanine nucleotide binding protein (G protein), beta polypeptide 4
hg19_v2_chr17_-_79633590_79633678	0.0900043	GLI3	ENST00000374741.3|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1 	ENST00000571503.1|OXLD1|ENSG00000204237.4|oxidoreductase-like domain containing 1
hg19_v2_chr8_+_144766669_144766683	0.0899616	GLI3	ENST00000526315.1|ZNF707|ENSG00000181135.11|zinc finger protein 707 	ENST00000532205.1|ZNF707|ENSG00000181135.11|zinc finger protein 707
hg19_v2_chr1_+_150122034_150122170	0.0899332	GLI3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr4_+_79567057_79567159	0.0897934	GLI3	ENST00000503259.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000507802.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr15_+_91478493_91478551	0.0896972	GLI3	ENST00000418476.2|UNC45A|ENSG00000140553.12|unc-45 homolog A (C. elegans)
hg19_v2_chr9_-_139637355_139637411	0.0895158	GLI3	ENST00000474369.1|LCN10|ENSG00000187922.9|lipocalin 10 	ENST00000497771.1|LCN10|ENSG00000187922.9|lipocalin 10 	ENST00000527229.1|LCN10|ENSG00000187922.9|lipocalin 10
hg19_v2_chr19_+_38893751_38893799	0.0892938	GLI3	ENST00000588262.1|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000252530.5|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C 	ENST00000343358.7|FAM98C|ENSG00000130244.8|family with sequence similarity 98, member C
hg19_v2_chr7_-_767249_767307	0.0892819	GLI3	ENST00000403562.1|PRKAR1B|ENSG00000188191.10|protein kinase, cAMP-dependent, regulatory, type I, beta
hg19_v2_chr8_+_120428546_120428642	0.088942	GLI3	ENST00000259526.3|NOV|ENSG00000136999.4|nephroblastoma overexpressed
hg19_v2_chr10_+_104404644_104404726	0.0885656	GLI3	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr20_+_33814457_33814506	0.088292	GLI3	ENST00000246186.6|MMP24|ENSG00000125966.8|matrix metallopeptidase 24 (membrane-inserted)
hg19_v2_chr6_-_26032288_26032337	0.0880065	GLI3	ENST00000244661.2|HIST1H3B|ENSG00000124693.2|histone cluster 1, H3b
hg19_v2_chr17_-_73179046_73179078	0.0879983	GLI3	ENST00000314523.7|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2 	ENST00000420826.2|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2
hg19_v2_chr4_-_6692246_6692274	0.087894	GLI3	ENST00000499502.2|RP11-539L10.2|ENSG00000246526.2|RP11-539L10.2
hg19_v2_chr3_+_9850199_9850239	0.0876779	GLI3	ENST00000452597.1|TTLL3|ENSG00000214021.11|tubulin tyrosine ligase-like family, member 3
hg19_v2_chr8_-_29120604_29120633	0.0876602	GLI3	ENST00000521515.1|KIF13B|ENSG00000197892.8|kinesin family member 13B
hg19_v2_chr7_-_105029812_105029860	0.0875996	GLI3	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr3_-_58196939_58196956	0.087581	GLI3	ENST00000394549.2|DNASE1L3|ENSG00000163687.9|deoxyribonuclease I-like 3 	ENST00000461914.3|DNASE1L3|ENSG00000163687.9|deoxyribonuclease I-like 3
hg19_v2_chr19_+_57901208_57901280	0.087502	GLI3	ENST00000366197.5|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596282.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000597400.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000598895.1|ZNF548|ENSG00000188785.7|zinc finger protein 548 	ENST00000596617.1|AC003002.6|ENSG00000269533.1|Uncharacterized protein  	ENST00000336128.7|ZNF548|ENSG00000188785.7|zinc finger protein 548
hg19_v2_chr12_-_122750957_122751001	0.0873621	GLI3	ENST00000451053.2|VPS33A|ENSG00000139719.5|vacuolar protein sorting 33 homolog A (S. cerevisiae)
hg19_v2_chr14_-_91976488_91976661	0.086228	GLI3	ENST00000554684.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000337238.4|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000428424.2|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENST00000554511.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr20_+_49348109_49348202	0.0861493	GLI3	ENST00000396039.1|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr2_-_160143242_160143310	0.0857095	GLI3	ENST00000359774.4|WDSUB1|ENSG00000196151.6|WD repeat, sterile alpha motif and U-box domain containing 1
hg19_v2_chr3_+_4535155_4535234	0.0854886	GLI3	ENST00000544951.1|ITPR1|ENSG00000150995.13|inositol 1,4,5-trisphosphate receptor, type 1
hg19_v2_chr1_+_25071848_25071944	0.0852846	GLI3	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr1_-_161600822_161600923	0.0852552	GLI3	ENST00000534776.1|FCGR3B|ENSG00000162747.5|Fc fragment of IgG, low affinity IIIb, receptor (CD16b) 	ENST00000540048.1|FCGR3A|ENSG00000203747.5|Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
hg19_v2_chr3_-_15469006_15469043	0.0852308	GLI3	ENST00000443029.1|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383790.3|METTL6|ENSG00000206562.7|methyltransferase like 6 	ENST00000383789.5|METTL6|ENSG00000206562.7|methyltransferase like 6
hg19_v2_chr17_-_7137582_7137637	0.0852177	GLI3	ENST00000575756.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2 	ENST00000575458.1|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr8_-_11853819_11853827	0.0850778	GLI3	ENST00000526438.1|DEFB134|ENSG00000205882.4|defensin, beta 134 	ENST00000382205.4|DEFB134|ENSG00000205882.4|defensin, beta 134
hg19_v2_chr4_+_24661479_24661534	0.0847477	GLI3	ENST00000569621.1|RP11-496D24.2|ENSG00000261121.1|RP11-496D24.2
hg19_v2_chr1_+_13910194_13910339	0.0841954	GLI3	ENST00000376057.4|PDPN|ENSG00000162493.12|podoplanin 	ENST00000510906.1|PDPN|ENSG00000162493.12|podoplanin
hg19_v2_chr5_+_67088974_67089048	0.0837189	GLI3	ENST00000513234.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000504068.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1	ENST00000515227.1|RP11-434D9.1|ENSG00000249364.1|RP11-434D9.1
hg19_v2_chr14_-_101295407_101295537	0.0836701	GLI3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr19_-_17571722_17571763	0.0835021	GLI3	ENST00000301944.2|NXNL1|ENSG00000171773.2|nucleoredoxin-like 1
hg19_v2_chr22_-_20461786_20461786	0.0828574	GLI3	ENST00000426804.1|RIMBP3|ENSG00000196622.6|RIMS binding protein 3
hg19_v2_chr7_-_112726393_112726567	0.0819079	GLI3	ENST00000449591.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000449735.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000438062.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000424100.1|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr19_+_17186577_17186637	0.0818559	GLI3	ENST00000595618.1|MYO9B|ENSG00000099331.9|myosin IXB 	ENST00000594824.1|MYO9B|ENSG00000099331.9|myosin IXB
hg19_v2_chrX_-_53254358_53254406	0.0814552	GLI3	ENST00000404049.3|KDM5C|ENSG00000126012.7|lysine (K)-specific demethylase 5C
hg19_v2_chr6_-_28367510_28367537	0.081219	GLI3	ENST00000361028.1|ZSCAN12|ENSG00000158691.10|zinc finger and SCAN domain containing 12
hg19_v2_chrY_+_25365594_25365701	0.0809105	GLI3	ENST00000382449.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382440.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382306.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382434.3|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000449947.1|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382294.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382433.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382424.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000400493.2|DAZ2|ENSG00000205944.7|deleted in azoospermia 2 	ENST00000382431.4|DAZ2|ENSG00000205944.7|deleted in azoospermia 2
hg19_v2_chr13_+_46039037_46039126	0.0807868	GLI3	ENST00000349995.5|COG3|ENSG00000136152.10|component of oligomeric golgi complex 3
hg19_v2_chr17_-_39296739_39296798	0.0802829	GLI3	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg19_v2_chr1_-_110283138_110283138	0.0802502	GLI3	ENST00000256594.3|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr2_+_235860616_235860645	0.0799601	GLI3	ENST00000392011.2|SH3BP4|ENSG00000130147.11|SH3-domain binding protein 4
hg19_v2_chr10_-_50342053_50342053	0.0798807	GLI3	ENST00000311787.5|FAM170B|ENSG00000172538.6|family with sequence similarity 170, member B
hg19_v2_chr2_+_264913_264964	0.0797286	GLI3	ENST00000439645.2|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble 	ENST00000405233.1|ACP1|ENSG00000143727.11|acid phosphatase 1, soluble
hg19_v2_chr19_+_45165545_45165545	0.079505	GLI3	ENST00000592472.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000587729.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000585657.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000592789.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19 	ENST00000591979.1|CEACAM19|ENSG00000186567.8|carcinoembryonic antigen-related cell adhesion molecule 19
hg19_v2_chr8_+_90914073_90914087	0.0794317	GLI3	ENST00000297438.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr16_+_55689991_55690000	0.0791024	GLI3	ENST00000568529.2|SLC6A2|ENSG00000103546.14|solute carrier family 6 (neurotransmitter transporter), member 2
hg19_v2_chr19_-_13213954_13214021	0.0789952	GLI3	ENST00000590974.1|LYL1|ENSG00000104903.4|lymphoblastic leukemia derived sequence 1
hg19_v2_chr8_-_27468945_27468948	0.0789859	GLI3	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr1_+_220701740_220701899	0.0789541	GLI3	ENST00000366917.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr7_-_994302_994333	0.0786026	GLI3	ENST00000265846.5|ADAP1|ENSG00000105963.9|ArfGAP with dual PH domains 1
hg19_v2_chr11_-_111649074_111649123	0.0781503	GLI3	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr6_-_33663474_33663474	0.0777635	GLI3	ENST00000594414.1|SBP1|ENSG00000269490.1|SBP1; Uncharacterized protein
hg19_v2_chr17_-_17494972_17495037	0.0769368	GLI3	ENST00000435340.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000255389.5|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase 	ENST00000395781.2|PEMT|ENSG00000133027.13|phosphatidylethanolamine N-methyltransferase
hg19_v2_chr14_+_101295948_101296031	0.076702	GLI3	ENST00000452514.2|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr14_-_91976794_91976871	0.0763577	GLI3	ENST00000555462.1|SMEK1|ENSG00000100796.13|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
hg19_v2_chr12_-_132690337_132690347	0.0762755	GLI3	ENST00000541995.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000542942.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr16_-_21452040_21452040	0.0762701	GLI3	ENST00000521589.1|NPIPB3|ENSG00000169246.12|nuclear pore complex interacting protein family, member B3
hg19_v2_chr19_-_344786_344826	0.075856	GLI3	ENST00000264819.4|MIER2|ENSG00000105556.6|mesoderm induction early response 1, family member 2
hg19_v2_chr11_-_62341445_62341499	0.0756392	GLI3	ENST00000329251.4|EEF1G|ENSG00000254772.5|eukaryotic translation elongation factor 1 gamma
hg19_v2_chr22_+_25615489_25615544	0.0754174	GLI3	ENST00000398215.2|CRYBB2|ENSG00000244752.2|crystallin, beta B2
hg19_v2_chr3_+_63897605_63897797	0.075363	GLI3	ENST00000487717.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr19_-_2096478_2096672	0.0752112	GLI3	ENST00000591236.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A 	ENST00000589902.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr17_-_46178649_46178711	0.0744269	GLI3	ENST00000495350.1|CBX1|ENSG00000108468.10|chromobox homolog 1 	ENST00000402583.1|CBX1|ENSG00000108468.10|chromobox homolog 1
hg19_v2_chr8_-_28243590_28243660	0.0741254	GLI3	ENST00000523095.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000522795.1|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr1_-_1356628_1356678	0.0733603	GLI3	ENST00000442470.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65 	ENST00000537107.1|ANKRD65|ENSG00000235098.4|ankyrin repeat domain 65
hg19_v2_chr17_-_26989136_26989218	0.0727508	GLI3	ENST00000247020.4|SDF2|ENSG00000132581.5|stromal cell-derived factor 2
hg19_v2_chr3_+_170075436_170075522	0.0725944	GLI3	ENST00000476188.1|SKIL|ENSG00000136603.9|SKI-like oncogene 	ENST00000259119.4|SKIL|ENSG00000136603.9|SKI-like oncogene 	ENST00000426052.2|SKIL|ENSG00000136603.9|SKI-like oncogene
hg19_v2_chr12_-_122985494_122985543	0.0723156	GLI3	ENST00000336229.4|ZCCHC8|ENSG00000033030.9|zinc finger, CCHC domain containing 8
hg19_v2_chr2_+_192109911_192110170	0.0722468	GLI3	ENST00000418908.1|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000339514.4|MYO1B|ENSG00000128641.13|myosin IB 	ENST00000392318.3|MYO1B|ENSG00000128641.13|myosin IB
hg19_v2_chr14_+_103566481_103566481	0.0718257	GLI3	ENST00000380069.3|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr19_+_39989580_39989608	0.0713336	GLI3	ENST00000596614.1|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila) 	ENST00000205143.4|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr9_-_27529726_27529827	0.0709512	GLI3	ENST00000262244.5|MOB3B|ENSG00000120162.9|MOB kinase activator 3B
hg19_v2_chr16_+_56691911_56691929	0.0708346	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.5|metallothionein 1F
hg19_v2_chr3_-_9811595_9811666	0.0706383	GLI3	ENST00000256460.3|CAMK1|ENSG00000134072.6|calcium/calmodulin-dependent protein kinase I
hg19_v2_chr19_-_12476443_12476467	0.0705143	GLI3	ENST00000242804.4|ZNF442|ENSG00000198342.5|zinc finger protein 442 	ENST00000438182.1|ZNF442|ENSG00000198342.5|zinc finger protein 442
hg19_v2_chr11_-_65629497_65629528	0.0704619	GLI3	ENST00000532134.1|CFL1|ENSG00000172757.8|cofilin 1 (non-muscle)
hg19_v2_chr7_-_155437075_155437113	0.0701597	GLI3	ENST00000401694.1|AC009403.2|ENSG00000216895.4|Protein LOC100506302
hg19_v2_chr16_+_30675654_30675778	0.0701262	GLI3	ENST00000287468.5|FBRS|ENSG00000156860.11|fibrosin 	ENST00000395073.2|FBRS|ENSG00000156860.11|fibrosin
hg19_v2_chr3_-_169482840_169482855	0.0697855	GLI3	ENST00000602385.1|TERC|ENSG00000270141.2|telomerase RNA component
hg19_v2_chr8_-_94752946_94753008	0.0697112	GLI3	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr9_+_134000948_134001043	0.0697017	GLI3	ENST00000359428.5|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000411637.2|NUP214|ENSG00000126883.12|nucleoporin 214kDa 	ENST00000451030.1|NUP214|ENSG00000126883.12|nucleoporin 214kDa
hg19_v2_chr10_-_46970474_46970515	0.069623	GLI3	ENST00000503753.1|SYT15|ENSG00000204176.9|synaptotagmin XV 	ENST00000374321.4|SYT15|ENSG00000204176.9|synaptotagmin XV
hg19_v2_chr16_+_84682108_84682218	0.069567	GLI3	ENST00000564996.1|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000258157.5|KLHL36|ENSG00000135686.8|kelch-like family member 36 	ENST00000567410.1|KLHL36|ENSG00000135686.8|kelch-like family member 36
hg19_v2_chr16_-_18801643_18801705	0.0690866	GLI3	ENST00000322989.4|RPS15A|ENSG00000134419.11|ribosomal protein S15a 	ENST00000563390.1|RPS15A|ENSG00000134419.11|ribosomal protein S15a
hg19_v2_chr12_-_89919220_89919392	0.0688812	GLI3	ENST00000549035.1|POC1B|ENSG00000139323.9|POC1 centriolar protein B 	ENST00000393179.4|POC1B|ENSG00000139323.9|POC1 centriolar protein B
hg19_v2_chr3_+_11314072_11314098	0.0687578	GLI3	ENST00000444619.1|ATG7|ENSG00000197548.8|autophagy related 7
hg19_v2_chr2_+_131862900_131862926	0.0686612	GLI3	ENST00000438882.2|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000538982.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2 	ENST00000404460.1|PLEKHB2|ENSG00000115762.12|pleckstrin homology domain containing, family B (evectins) member 2
hg19_v2_chr2_+_220379052_220379131	0.0685836	GLI3	ENST00000347842.3|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4 	ENST00000358078.4|ASIC4|ENSG00000072182.8|acid-sensing (proton-gated) ion channel family member 4
hg19_v2_chr1_+_11866207_11866268	0.0684833	GLI3	ENST00000312413.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6 	ENST00000346436.6|CLCN6|ENSG00000011021.17|chloride channel, voltage-sensitive 6
hg19_v2_chr16_+_89894911_89894955	0.0684785	GLI3	ENST00000378247.3|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2 	ENST00000563972.1|SPIRE2|ENSG00000204991.6|spire-type actin nucleation factor 2
hg19_v2_chr14_+_22409308_22409322	0.0681888	GLI3	ENST00000390441.2|TRAV9-2|ENSG00000211793.2|T cell receptor alpha variable 9-2
hg19_v2_chr17_-_43502987_43503004	0.0679101	GLI3	ENST00000376922.2|ARHGAP27|ENSG00000159314.7|Rho GTPase activating protein 27
hg19_v2_chr19_-_16653325_16653358	0.0678913	GLI3	ENST00000546361.2|CHERP|ENSG00000085872.10|calcium homeostasis endoplasmic reticulum protein
hg19_v2_chr12_-_132690573_132690704	0.0677183	GLI3	ENST00000397325.2|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) 	ENST00000538356.1|GALNT9|ENSG00000182870.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
hg19_v2_chr5_-_37249397_37249530	0.0675489	GLI3	ENST00000425232.2|C5orf42|ENSG00000197603.9|chromosome 5 open reading frame 42 	ENST00000274258.7|C5orf42|ENSG00000197603.9|chromosome 5 open reading frame 42
hg19_v2_chr17_+_78193443_78193498	0.0675202	GLI3	ENST00000577155.1|SLC26A11|ENSG00000181045.10|solute carrier family 26 (anion exchanger), member 11
hg19_v2_chr10_-_97050777_97050806	0.0675021	GLI3	ENST00000329399.6|PDLIM1|ENSG00000107438.4|PDZ and LIM domain 1
hg19_v2_chr17_-_34757039_34757050	0.0672806	GLI3	ENST00000455054.2|TBC1D3H|ENSG00000242384.3|TBC1 domain family, member 3H 	ENST00000308078.7|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chrX_-_134156502_134156577	0.0672536	GLI3	ENST00000391440.1|FAM127C|ENSG00000212747.3|family with sequence similarity 127, member C
hg19_v2_chr11_+_1093318_1093345	0.0671806	GLI3	ENST00000333592.6|MUC2|ENSG00000198788.7|mucin 2, oligomeric mucus/gel-forming
hg19_v2_chr19_-_16284286_16284336	0.0670553	GLI3	ENST00000379859.3|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3 	ENST00000269878.4|CIB3|ENSG00000141977.5|calcium and integrin binding family member 3
hg19_v2_chr6_+_90272488_90272564	0.0670312	GLI3	ENST00000485637.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6 	ENST00000522705.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr5_-_176827631_176827637	0.0669782	GLI3	ENST00000358571.2|PFN3|ENSG00000196570.2|profilin 3
hg19_v2_chr14_-_92414294_92414355	0.0667943	GLI3	ENST00000554468.1|FBLN5|ENSG00000140092.10|fibulin 5
hg19_v2_chr10_-_72043432_72043432	0.066167	GLI3	ENST00000277942.6|NPFFR1|ENSG00000148734.7|neuropeptide FF receptor 1
hg19_v2_chr19_+_40476912_40476939	0.0661636	GLI3	ENST00000157812.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr11_+_118477144_118477156	0.065642	GLI3	ENST00000361417.2|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr14_-_51297360_51297426	0.0654298	GLI3	ENST00000496749.1|NIN|ENSG00000100503.19|ninein (GSK3B interacting protein)
hg19_v2_chr13_+_20532807_20532841	0.0653999	GLI3	ENST00000382869.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2 	ENST00000382881.3|ZMYM2|ENSG00000121741.12|zinc finger, MYM-type 2
hg19_v2_chr17_-_34592032_34592032	0.0642477	GLI3	ENST00000457979.3|TBC1D3C|ENSG00000234972.4|TBC1 domain family, member 3C
hg19_v2_chr6_-_36725157_36725188	0.0637161	GLI3	ENST00000393189.2|CPNE5|ENSG00000124772.7|copine V
hg19_v2_chr9_+_131873659_131873714	0.0636777	GLI3	ENST00000452489.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000347048.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000357197.4|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000445241.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000355007.3|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414331.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr11_+_121461097_121461128	0.0631936	GLI3	ENST00000527934.1|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr9_+_131873591_131873622	0.0628723	GLI3	ENST00000393370.2|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000337738.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000348141.5|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr4_+_15480828_15480868	0.0622615	GLI3	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr5_-_180237082_180237148	0.0621821	GLI3	ENST00000506889.1|MGAT1|ENSG00000131446.11|mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
hg19_v2_chr2_+_74418517_74418517	0.0619745	GLI3	ENST00000597714.1|CATX-2|ENSG00000267958.1|HCG1989573; Uncharacterized protein
hg19_v2_chrX_+_107334895_107334934	0.0618481	GLI3	ENST00000372232.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000345734.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000372254.3|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase
hg19_v2_chr1_-_243418344_243418356	0.0617477	GLI3	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr11_+_60197040_60197062	0.0617435	GLI3	ENST00000300190.2|MS4A5|ENSG00000166930.2|membrane-spanning 4-domains, subfamily A, member 5
hg19_v2_chr1_+_55464600_55464608	0.0616057	GLI3	ENST00000371265.4|BSND|ENSG00000162399.6|Bartter syndrome, infantile, with sensorineural deafness (Barttin)
hg19_v2_chr17_+_7761013_7761074	0.0611752	GLI3	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr8_+_124194875_124194921	0.0611122	GLI3	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr19_+_3708338_3708374	0.0607942	GLI3	ENST00000590545.1|TJP3|ENSG00000105289.10|tight junction protein 3
hg19_v2_chr12_+_52695617_52695649	0.0607205	GLI3	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr1_+_24117693_24117717	0.060368	GLI3	ENST00000374503.3|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374502.3|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr17_-_80009209_80009449	0.0601612	GLI3	ENST00000429557.3|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 	ENST00000578356.1|RFNG|ENSG00000169733.7|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
hg19_v2_chr8_+_90914757_90914856	0.0600855	GLI3	ENST00000451899.2|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr15_-_102192567_102192597	0.060073	GLI3	ENST00000333202.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000428002.2|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000559107.1|TM2D3|ENSG00000184277.8|TM2 domain containing 3 	ENST00000347970.3|TM2D3|ENSG00000184277.8|TM2 domain containing 3
hg19_v2_chr2_+_20068628_20068661	0.059582	GLI3	ENST00000449086.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000456119.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954 	ENST00000433669.1|LINC00954|ENSG00000228784.3|long intergenic non-protein coding RNA 954
hg19_v2_chr19_+_54619125_54619189	0.0594946	GLI3	ENST00000445811.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000419967.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000445124.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31 	ENST00000447810.1|PRPF31|ENSG00000105618.9|pre-mRNA processing factor 31
hg19_v2_chr16_+_9185450_9185516	0.0594292	GLI3	ENST00000327827.7|C16orf72|ENSG00000182831.7|chromosome 16 open reading frame 72
hg19_v2_chr11_-_68780701_68780736	0.0592592	GLI3	ENST00000320913.6|MRGPRF|ENSG00000172935.8|MAS-related GPR, member F
hg19_v2_chr11_-_1912084_1912084	0.0590837	GLI3	ENST00000391480.1|C11orf89|ENSG00000184682.5|chromosome 11 open reading frame 89
hg19_v2_chr18_-_19180681_19180711	0.0587607	GLI3	ENST00000269214.5|ESCO1|ENSG00000141446.6|establishment of sister chromatid cohesion N-acetyltransferase 1
hg19_v2_chr3_+_41240986_41241005	0.0587553	GLI3	ENST00000396185.3|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa
hg19_v2_chr1_-_866445_866445	0.0587195	GLI3	ENST00000598827.1|AL645608.1|ENSG00000268179.1|Uncharacterized protein
hg19_v2_chr19_-_49552006_49552006	0.0581272	GLI3	ENST00000391869.3|CGB1|ENSG00000267631.3|chorionic gonadotropin, beta polypeptide 1
hg19_v2_chr7_-_142169013_142169065	0.058063	GLI3	ENST00000454561.2|TRBV5-4|ENSG00000230099.2|T cell receptor beta variable 5-4
hg19_v2_chr3_+_238456_238502	0.057904	GLI3	ENST00000427688.1|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chr3_-_107809816_107809885	0.0578777	GLI3	ENST00000361309.5|CD47|ENSG00000196776.10|CD47 molecule 	ENST00000355354.7|CD47|ENSG00000196776.10|CD47 molecule
hg19_v2_chr5_-_141060389_141060439	0.0576425	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.11|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg19_v2_chr18_+_3451646_3451722	0.0571385	GLI3	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr20_+_3190006_3190178	0.0565401	GLI3	ENST00000380113.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000455664.2|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 	ENST00000399838.3|ITPA|ENSG00000125877.8|inosine triphosphatase (nucleoside triphosphate pyrophosphatase)
hg19_v2_chr14_-_94856951_94856979	0.0565192	GLI3	ENST00000553327.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000556955.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000557118.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 	ENST00000440909.1|SERPINA1|ENSG00000197249.8|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
hg19_v2_chr17_-_42031300_42031313	0.0564864	GLI3	ENST00000592796.1|PYY|ENSG00000131096.6|peptide YY
hg19_v2_chr13_+_113698946_113698993	0.0563757	GLI3	ENST00000397021.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr11_+_14665263_14665274	0.0563735	GLI3	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr17_+_61473104_61473104	0.0562011	GLI3	ENST00000583016.1|TANC2|ENSG00000170921.10|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
hg19_v2_chr1_-_95285764_95285837	0.0558263	GLI3	ENST00000414374.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000421997.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000418366.2|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057 	ENST00000452922.1|LINC01057|ENSG00000224081.3|long intergenic non-protein coding RNA 1057
hg19_v2_chr5_-_146833222_146833261	0.0557308	GLI3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr16_-_2318055_2318104	0.0556739	GLI3	ENST00000561518.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000561718.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000567147.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000562690.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000569598.2|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr17_+_75450075_75450094	0.0553663	GLI3	ENST00000592951.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr17_-_73149921_73149971	0.0553659	GLI3	ENST00000481647.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1 	ENST00000470924.1|HN1|ENSG00000189159.11|hematological and neurological expressed 1
hg19_v2_chr15_-_74659978_74660081	0.0553659	GLI3	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr7_+_63774321_63774408	0.0551291	GLI3	ENST00000423484.2|ZNF736|ENSG00000234444.5|zinc finger protein 736
hg19_v2_chr8_-_22526597_22526661	0.0547873	GLI3	ENST00000519513.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000276416.6|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000520292.1|BIN3|ENSG00000147439.7|bridging integrator 3 	ENST00000522268.1|BIN3|ENSG00000147439.7|bridging integrator 3
hg19_v2_chr7_+_47694842_47694842	0.0547403	GLI3	ENST00000408988.2|C7orf65|ENSG00000221845.2|chromosome 7 open reading frame 65
hg19_v2_chr11_+_44087729_44087827	0.0545089	GLI3	ENST00000524990.1|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 	ENST00000263776.8|ACCS|ENSG00000110455.9|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
hg19_v2_chr22_+_20193905_20193930	0.0540793	GLI3	ENST00000609602.1|LINC00896|ENSG00000236499.2|long intergenic non-protein coding RNA 896
hg19_v2_chr10_-_112064665_112064737	0.0537684	GLI3	ENST00000369603.5|SMNDC1|ENSG00000119953.8|survival motor neuron domain containing 1
hg19_v2_chr11_+_64009072_64009220	0.0535634	GLI3	ENST00000535135.1|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa 	ENST00000394540.3|FKBP2|ENSG00000173486.8|FK506 binding protein 2, 13kDa
hg19_v2_chr12_+_57853918_57853934	0.0534461	GLI3	ENST00000532291.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000543426.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000228682.2|GLI1|ENSG00000111087.5|GLI family zinc finger 1 	ENST00000546141.1|GLI1|ENSG00000111087.5|GLI family zinc finger 1
hg19_v2_chr17_+_73084038_73084081	0.0533107	GLI3	ENST00000578376.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000329783.4|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr11_+_76778033_76778047	0.0529334	GLI3	ENST00000456580.2|CAPN5|ENSG00000149260.10|calpain 5
hg19_v2_chr1_+_35220613_35220718	0.0526168	GLI3	ENST00000338513.1|GJB5|ENSG00000189280.3|gap junction protein, beta 5, 31.1kDa
hg19_v2_chr1_+_15764931_15764945	0.0522305	GLI3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr1_+_24117662_24117682	0.051837	GLI3	ENST00000420982.1|LYPLA2|ENSG00000011009.6|lysophospholipase II 	ENST00000374505.2|LYPLA2|ENSG00000011009.6|lysophospholipase II
hg19_v2_chr11_+_18194384_18194384	0.0515925	GLI3	ENST00000314254.3|MRGPRX4|ENSG00000179817.3|MAS-related GPR, member X4
hg19_v2_chr21_-_35831880_35831902	0.0506981	GLI3	ENST00000399289.3|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1 	ENST00000432085.1|KCNE1|ENSG00000180509.7|potassium voltage-gated channel, Isk-related family, member 1
hg19_v2_chr19_-_54746600_54746649	0.0506343	GLI3	ENST00000245621.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000407860.2|LILRB3|ENSG00000204577.7|leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 	ENST00000270464.5|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000419410.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000391735.3|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000396365.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 	ENST00000440558.2|LILRA6|ENSG00000244482.5|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
hg19_v2_chr4_+_113152978_113152989	0.0503985	GLI3	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr11_+_117070904_117070971	0.0503522	GLI3	ENST00000529792.1|TAGLN|ENSG00000149591.12|transgelin
hg19_v2_chr11_-_113346111_113346125	0.0503463	GLI3	ENST00000362072.3|DRD2|ENSG00000149295.9|dopamine receptor D2
hg19_v2_chr1_+_108918421_108918421	0.0502634	GLI3	ENST00000444143.2|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6 	ENST00000294652.8|NBPF6|ENSG00000186086.12|neuroblastoma breakpoint family, member 6
hg19_v2_chr22_-_45021265_45021299	0.0501569	GLI3	ENST00000443783.1|LINC00229|ENSG00000234300.1|long intergenic non-protein coding RNA 229
hg19_v2_chr7_+_916183_916204	0.0497265	GLI3	ENST00000265857.3|GET4|ENSG00000239857.2|golgi to ER traffic protein 4 homolog (S. cerevisiae)
hg19_v2_chr22_+_50925213_50925305	0.0496736	GLI3	ENST00000395733.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000216075.6|MIOX|ENSG00000100253.8|myo-inositol oxygenase 	ENST00000395732.3|MIOX|ENSG00000100253.8|myo-inositol oxygenase
hg19_v2_chr15_-_41047421_41047534	0.0494364	GLI3	ENST00000560460.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000338376.3|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3 	ENST00000560905.1|RMDN3|ENSG00000137824.11|regulator of microtubule dynamics 3
hg19_v2_chr3_+_140660634_140660729	0.0490231	GLI3	ENST00000446041.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000507429.1|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 	ENST00000324194.6|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr22_+_46481861_46481895	0.0487618	GLI3	ENST00000360737.3|FLJ27365|ENSG00000197182.8|hsa-mir-4763
hg19_v2_chr6_+_29427548_29427548	0.0482477	GLI3	ENST00000377132.1|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr13_+_32313658_32313679	0.0480555	GLI3	ENST00000380314.1|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2 	ENST00000298386.2|RXFP2|ENSG00000133105.3|relaxin/insulin-like family peptide receptor 2
hg19_v2_chr12_+_10034085_10034109	0.0475948	GLI3	ENST00000535540.1|KLRF2|ENSG00000256797.1|killer cell lectin-like receptor subfamily F, member 2
hg19_v2_chr1_+_228337553_228337602	0.0475529	GLI3	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr22_+_45064593_45064656	0.0472952	GLI3	ENST00000432186.1|PRR5|ENSG00000186654.16|proline rich 5 (renal)
hg19_v2_chr18_-_60987220_60987386	0.0470502	GLI3	ENST00000398117.1|BCL2|ENSG00000171791.10|B-cell CLL/lymphoma 2
hg19_v2_chr13_+_32889605_32889653	0.0467391	GLI3	ENST00000380152.3|BRCA2|ENSG00000139618.10|breast cancer 2, early onset 	ENST00000544455.1|BRCA2|ENSG00000139618.10|breast cancer 2, early onset 	ENST00000530893.2|BRCA2|ENSG00000139618.10|breast cancer 2, early onset
hg19_v2_chr8_-_142011244_142011288	0.0461045	GLI3	ENST00000340930.3|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000520828.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000524257.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2 	ENST00000523679.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr11_-_61124776_61124819	0.0460852	GLI3	ENST00000542361.1|CYB561A3|ENSG00000162144.5|cytochrome b561 family, member A3
hg19_v2_chr12_-_6798616_6798684	0.0460507	GLI3	ENST00000355772.4|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000417772.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396801.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000396799.2|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr19_+_12305895_12305911	0.0450967	GLI3	ENST00000451691.2|CTD-2666L21.1|ENSG00000234773.2|CTD-2666L21.1
hg19_v2_chr17_-_7760779_7760896	0.0448044	GLI3	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr10_+_38717074_38717074	0.0447857	GLI3	ENST00000423687.1|LINC00999|ENSG00000225119.3|long intergenic non-protein coding RNA 999
hg19_v2_chr1_-_209792111_209792143	0.0446664	GLI3	ENST00000455193.1|LAMB3|ENSG00000196878.8|laminin, beta 3
hg19_v2_chr1_-_176176629_176176659	0.0445869	GLI3	ENST00000367669.3|RFWD2|ENSG00000143207.15|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase
hg19_v2_chr1_+_162531294_162531332	0.0445424	GLI3	ENST00000367926.4|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1 	ENST00000271469.3|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1
hg19_v2_chr11_+_576494_576521	0.044077	GLI3	ENST00000533464.1|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000413872.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1 	ENST00000416188.2|PHRF1|ENSG00000070047.7|PHD and ring finger domains 1
hg19_v2_chr1_-_34630820_34630875	0.0439817	GLI3	ENST00000373381.4|CSMD2|ENSG00000121904.13|CUB and Sushi multiple domains 2
hg19_v2_chr6_-_33548006_33548069	0.0433511	GLI3	ENST00000374467.3|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr16_-_89043488_89043528	0.0431033	GLI3	ENST00000563640.1|CBFA2T3|ENSG00000129993.10|core-binding factor, runt domain, alpha subunit 2; translocated to, 3
hg19_v2_chr17_-_7761172_7761209	0.0430683	GLI3	ENST00000333775.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575771.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr9_-_95896550_95896570	0.0429184	GLI3	ENST00000375446.4|NINJ1|ENSG00000131669.5|ninjurin 1
hg19_v2_chr17_+_36873677_36873800	0.0428223	GLI3	ENST00000471200.1|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr1_+_67673297_67673349	0.042144	GLI3	ENST00000425614.1|IL23R|ENSG00000162594.10|interleukin 23 receptor 	ENST00000395227.1|IL23R|ENSG00000162594.10|interleukin 23 receptor
hg19_v2_chr16_+_29984962_29984962	0.0420345	GLI3	ENST00000308893.4|TAOK2|ENSG00000149930.13|TAO kinase 2
hg19_v2_chr3_+_140660743_140660758	0.0418562	GLI3	ENST00000453248.2|SLC25A36|ENSG00000114120.7|solute carrier family 25 (pyrimidine nucleotide carrier ), member 36
hg19_v2_chr12_+_14927270_14927347	0.0415412	GLI3	ENST00000544848.1|H2AFJ|ENSG00000246705.3|H2A histone family, member J
hg19_v2_chr8_-_142011291_142011307	0.0408097	GLI3	ENST00000521059.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr21_+_45079409_45079452	0.0404399	GLI3	ENST00000340648.4|RRP1B|ENSG00000160208.11|ribosomal RNA processing 1B
hg19_v2_chrX_+_23685653_23685681	0.0399103	GLI3	ENST00000379331.3|PRDX4|ENSG00000123131.8|peroxiredoxin 4
hg19_v2_chr7_-_99680171_99680204	0.0396281	GLI3	ENST00000428683.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr17_-_1029866_1029912	0.0396025	GLI3	ENST00000570525.1|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr3_+_15468862_15468909	0.038672	GLI3	ENST00000396842.2|EAF1|ENSG00000144597.9|ELL associated factor 1
hg19_v2_chr17_-_42019836_42019844	0.0385299	GLI3	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr9_+_15553055_15553101	0.038075	GLI3	ENST00000380701.3|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr16_-_2059748_2059777	0.037641	GLI3	ENST00000562103.1|ZNF598|ENSG00000167962.8|zinc finger protein 598 	ENST00000431526.1|ZNF598|ENSG00000167962.8|zinc finger protein 598
hg19_v2_chrX_+_55744166_55744222	0.0363124	GLI3	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr12_-_76377795_76377810	0.0361537	GLI3	ENST00000552856.1|RP11-114H23.1|ENSG00000258077.2|RP11-114H23.1
hg19_v2_chr17_-_76899275_76899302	0.0360288	GLI3	ENST00000322630.2|DDC8|ENSG00000178404.5|Protein DDC8 homolog  	ENST00000586713.1|DDC8|ENSG00000178404.5|Protein DDC8 homolog
hg19_v2_chr12_-_30907749_30907794	0.0355837	GLI3	ENST00000542550.1|CAPRIN2|ENSG00000110888.13|caprin family member 2 	ENST00000540584.1|CAPRIN2|ENSG00000110888.13|caprin family member 2
hg19_v2_chr10_+_18948311_18948417	0.0353926	GLI3	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr1_+_150521876_150521901	0.0348317	GLI3	ENST00000369041.5|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4 	ENST00000538795.1|AL356356.1|ENSG00000225996.2|Protein LOC100996516  	ENST00000271643.4|ADAMTSL4|ENSG00000143382.9|ADAMTS-like 4
hg19_v2_chr9_+_132962843_132962872	0.0346085	GLI3	ENST00000458469.1|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr13_+_49822041_49822184	0.0345626	GLI3	ENST00000538056.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000251108.6|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000444959.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1 	ENST00000429346.1|CDADC1|ENSG00000102543.10|cytidine and dCMP deaminase domain containing 1
hg19_v2_chr17_+_33448593_33448602	0.0344828	GLI3	ENST00000158009.5|FNDC8|ENSG00000073598.5|fibronectin type III domain containing 8
hg19_v2_chr1_+_201708992_201709011	0.0344819	GLI3	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr19_+_39989535_39989562	0.0343323	GLI3	ENST00000356433.5|DLL3|ENSG00000090932.6|delta-like 3 (Drosophila)
hg19_v2_chr17_+_41158742_41158822	0.0340738	GLI3	ENST00000415816.2|IFI35|ENSG00000068079.3|interferon-induced protein 35 	ENST00000438323.2|IFI35|ENSG00000068079.3|interferon-induced protein 35
hg19_v2_chr1_-_151826173_151826192	0.0340698	GLI3	ENST00000368817.5|THEM5|ENSG00000196407.7|thioesterase superfamily member 5
hg19_v2_chr1_+_165864821_165864850	0.0339311	GLI3	ENST00000470820.1|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr9_-_139345270_139345270	0.0336487	GLI3	ENST00000398335.1|SEC16A|ENSG00000148396.14|SEC16 homolog A (S. cerevisiae)
hg19_v2_chr19_+_39833036_39833108	0.033313	GLI3	ENST00000602243.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000598913.1|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B 	ENST00000314471.6|SAMD4B|ENSG00000179134.10|sterile alpha motif domain containing 4B
hg19_v2_chr17_+_73089382_73089451	0.0331124	GLI3	ENST00000538213.2|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5 	ENST00000584118.1|SLC16A5|ENSG00000170190.11|solute carrier family 16 (monocarboxylate transporter), member 5
hg19_v2_chr22_+_41487711_41487798	0.0328088	GLI3	ENST00000263253.7|EP300|ENSG00000100393.9|E1A binding protein p300
hg19_v2_chr19_+_34663397_34663473	0.0327586	GLI3	ENST00000540746.2|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000544216.3|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae) 	ENST00000433627.5|LSM14A|ENSG00000257103.4|LSM14A, SCD6 homolog A (S. cerevisiae)
hg19_v2_chr2_+_217363793_217363823	0.0326337	GLI3	ENST00000456586.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000598925.1|RPL37A|ENSG00000197756.5|ribosomal protein L37a 	ENST00000427280.2|RPL37A|ENSG00000197756.5|ribosomal protein L37a
hg19_v2_chr8_-_67525473_67525518	0.032118	GLI3	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr6_-_28367481_28367508	0.0321045	GLI3	ENST00000396827.3|ZSCAN12|ENSG00000158691.10|zinc finger and SCAN domain containing 12
hg19_v2_chr5_-_43483929_43484002	0.031881	GLI3	ENST00000500337.2|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000506860.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000510130.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000397080.3|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28 	ENST00000512085.1|C5orf28|ENSG00000151881.10|chromosome 5 open reading frame 28
hg19_v2_chr20_+_58203664_58203713	0.0317797	GLI3	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chrX_+_107334983_107335024	0.0316734	GLI3	ENST00000457035.1|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase 	ENST00000545696.1|ATG4A|ENSG00000101844.13|autophagy related 4A, cysteine peptidase
hg19_v2_chr15_+_40531621_40531719	0.0316212	GLI3	ENST00000560346.1|PAK6|ENSG00000137843.7|p21 protein (Cdc42/Rac)-activated kinase 6
hg19_v2_chr3_-_108308241_108308316	0.0315495	GLI3	ENST00000295746.8|KIAA1524|ENSG00000163507.9|KIAA1524
hg19_v2_chr2_-_145275109_145275128	0.0314422	GLI3	ENST00000431672.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr6_-_136610911_136610990	0.0313144	GLI3	ENST00000530767.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527759.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000527536.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000529826.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000531224.1|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1 	ENST00000353331.4|BCLAF1|ENSG00000029363.11|BCL2-associated transcription factor 1
hg19_v2_chr19_-_51340469_51340469	0.0312616	GLI3	ENST00000326856.4|KLK15|ENSG00000174562.9|kallikrein-related peptidase 15
hg19_v2_chr10_-_43903217_43903267	0.0309025	GLI3	ENST00000357065.4|HNRNPF|ENSG00000169813.12|heterogeneous nuclear ribonucleoprotein F
hg19_v2_chr2_+_47452905_47452933	0.0305955	GLI3	ENST00000444361.1|AC106869.2|ENSG00000226087.1|AC106869.2
hg19_v2_chr1_+_152178320_152178334	0.0304508	GLI3	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr12_-_5849134_5849134	0.0303354	GLI3	ENST00000545860.1|ANO2|ENSG00000047617.10|anoctamin 2
hg19_v2_chr17_-_79358929_79358954	0.0297128	GLI3	ENST00000570301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr12_-_56122761_56123004	0.0294362	GLI3	ENST00000552164.1|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000420846.3|CD63|ENSG00000135404.7|CD63 molecule 	ENST00000257857.4|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr1_+_36690011_36690092	0.0291608	GLI3	ENST00000354618.5|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000469141.2|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3 	ENST00000478853.1|THRAP3|ENSG00000054118.9|thyroid hormone receptor associated protein 3
hg19_v2_chr7_+_99971068_99971128	0.0283452	GLI3	ENST00000198536.2|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha 	ENST00000453419.1|PILRA|ENSG00000085514.11|paired immunoglobin-like type 2 receptor alpha
hg19_v2_chr15_-_77363441_77363506	0.0281506	GLI3	ENST00000346495.2|TSPAN3|ENSG00000140391.10|tetraspanin 3 	ENST00000424443.3|TSPAN3|ENSG00000140391.10|tetraspanin 3 	ENST00000561277.1|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr17_-_73178599_73178714	0.0272155	GLI3	ENST00000578238.1|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2
hg19_v2_chr6_-_167040731_167040745	0.0271657	GLI3	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr19_+_40477062_40477112	0.0267902	GLI3	ENST00000455878.2|PSMC4|ENSG00000013275.3|proteasome (prosome, macropain) 26S subunit, ATPase, 4
hg19_v2_chr9_-_123476612_123476698	0.0267626	GLI3	ENST00000426959.1|MEGF9|ENSG00000106780.7|multiple EGF-like-domains 9
hg19_v2_chr9_+_131873842_131873967	0.0267433	GLI3	ENST00000417728.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr2_-_68052694_68052757	0.026071	GLI3	ENST00000457448.1|AC010987.6|ENSG00000237013.1|AC010987.6
hg19_v2_chr12_+_31226779_31226834	0.0259168	GLI3	ENST00000542838.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000407793.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000251758.5|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000228264.6|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000438391.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000415475.2|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000545668.1|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 	ENST00000350437.4|DDX11|ENSG00000013573.12|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11
hg19_v2_chr17_+_75123947_75123964	0.0259093	GLI3	ENST00000586429.1|SEC14L1|ENSG00000129657.10|SEC14-like 1 (S. cerevisiae)
hg19_v2_chr8_+_90914859_90914989	0.0256346	GLI3	ENST00000520659.1|OSGIN2|ENSG00000164823.5|oxidative stress induced growth inhibitor family member 2
hg19_v2_chr2_-_43266680_43266701	0.0255774	GLI3	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr8_+_37594103_37594125	0.0254947	GLI3	ENST00000397228.2|ERLIN2|ENSG00000147475.10|ER lipid raft associated 2
hg19_v2_chrX_-_47518527_47518587	0.0250873	GLI3	ENST00000333119.3|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr5_+_150157860_150157883	0.0250653	GLI3	ENST00000600109.1|AC010441.1|ENSG00000269636.1|AC010441.1
hg19_v2_chr3_-_42623428_42623520	0.0250195	GLI3	ENST00000423701.2|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000420163.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000416880.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000536332.1|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000264454.3|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae) 	ENST00000273156.7|SEC22C|ENSG00000093183.9|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)
hg19_v2_chr2_-_71047727_71047733	0.0246824	GLI3	ENST00000272367.2|CLEC4F|ENSG00000152672.3|C-type lectin domain family 4, member F
hg19_v2_chr15_-_101817492_101817519	0.0245116	GLI3	ENST00000528346.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein 	ENST00000531964.1|VIMP|ENSG00000131871.10|VCP-interacting membrane protein
hg19_v2_chr19_-_2085323_2085391	0.0244326	GLI3	ENST00000591638.1|MOB3A|ENSG00000172081.9|MOB kinase activator 3A
hg19_v2_chr3_-_49066811_49066851	0.0242645	GLI3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chrX_+_1733876_1733894	0.0242474	GLI3	ENST00000381241.3|ASMT|ENSG00000196433.7|acetylserotonin O-methyltransferase
hg19_v2_chrX_-_71497148_71497163	0.024062	GLI3	ENST00000316084.6|RPS4X|ENSG00000198034.6|ribosomal protein S4, X-linked
hg19_v2_chr6_+_111303218_111303301	0.0237768	GLI3	ENST00000441448.2|RPF2|ENSG00000197498.8|ribosome production factor 2 homolog (S. cerevisiae)
hg19_v2_chr11_+_123301012_123301058	0.023098	GLI3	ENST00000533341.1|AP000783.1|ENSG00000254667.1|Uncharacterized protein
hg19_v2_chr3_+_239652_239708	0.0230223	GLI3	ENST00000435603.1|CHL1|ENSG00000134121.5|cell adhesion molecule L1-like
hg19_v2_chrX_+_55744228_55744318	0.0225901	GLI3	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr19_+_51628165_51628165	0.0225455	GLI3	ENST00000250360.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9 	ENST00000440804.3|SIGLEC9|ENSG00000129450.4|sialic acid binding Ig-like lectin 9
hg19_v2_chr20_+_22201070_22201192	0.0225185	GLI3	ENST00000439450.1|RP5-1097P24.1|ENSG00000234862.1|RP5-1097P24.1
hg19_v2_chr12_-_108714412_108714446	0.0224124	GLI3	ENST00000412676.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1 	ENST00000550573.1|CMKLR1|ENSG00000174600.9|chemokine-like receptor 1
hg19_v2_chr20_-_6104191_6104228	0.0222151	GLI3	ENST00000217289.4|FERMT1|ENSG00000101311.11|fermitin family member 1
hg19_v2_chr1_-_55266865_55266876	0.0221955	GLI3	ENST00000371274.4|TTC22|ENSG00000006555.6|tetratricopeptide repeat domain 22
hg19_v2_chr7_+_106810165_106810374	0.0221702	GLI3	ENST00000468401.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000497535.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1 	ENST00000485846.1|HBP1|ENSG00000105856.9|HMG-box transcription factor 1
hg19_v2_chr12_+_64846129_64846255	0.0221372	GLI3	ENST00000540417.1|TBK1|ENSG00000183735.5|TANK-binding kinase 1 	ENST00000539810.1|TBK1|ENSG00000183735.5|TANK-binding kinase 1
hg19_v2_chr19_+_35396219_35396233	0.0216952	GLI3	ENST00000595783.1|CTC-523E23.6|ENSG00000269037.1|CTC-523E23.6
hg19_v2_chr3_+_141496990_141496990	0.0216273	GLI3	ENST00000264952.2|GRK7|ENSG00000114124.2|G protein-coupled receptor kinase 7
hg19_v2_chrX_-_148669116_148669116	0.0215485	GLI3	ENST00000243314.5|MAGEA9B|ENSG00000123584.7|melanoma antigen family A, 9B
hg19_v2_chr12_-_88535747_88535841	0.0212783	GLI3	ENST00000309041.7|CEP290|ENSG00000198707.10|centrosomal protein 290kDa
hg19_v2_chr1_-_19811132_19811158	0.021	GLI3	ENST00000433834.1|CAPZB|ENSG00000077549.13|capping protein (actin filament) muscle Z-line, beta
hg19_v2_chr20_+_48552908_48552949	0.0200334	GLI3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr20_-_62587735_62587777	0.0196826	GLI3	ENST00000354216.6|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000369892.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1 	ENST00000358711.3|UCKL1|ENSG00000198276.9|uridine-cytidine kinase 1-like 1
hg19_v2_chr12_+_106994905_106994954	0.0194159	GLI3	ENST00000357881.4|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chrX_-_47518498_47518521	0.0192361	GLI3	ENST00000335890.2|UXT|ENSG00000126756.7|ubiquitously-expressed, prefoldin-like chaperone
hg19_v2_chr17_+_7905912_7905945	0.018994	GLI3	ENST00000254854.4|GUCY2D|ENSG00000132518.6|guanylate cyclase 2D, membrane (retina-specific)
hg19_v2_chr11_+_69931519_69931528	0.0189614	GLI3	ENST00000316296.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel 	ENST00000530676.1|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr20_-_23402028_23402157	0.018925	GLI3	ENST00000398425.3|NAPB|ENSG00000125814.13|N-ethylmaleimide-sensitive factor attachment protein, beta 	ENST00000432543.2|NAPB|ENSG00000125814.13|N-ethylmaleimide-sensitive factor attachment protein, beta 	ENST00000377026.4|NAPB|ENSG00000125814.13|N-ethylmaleimide-sensitive factor attachment protein, beta
hg19_v2_chr6_-_30815936_30816035	0.018598	GLI3	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr15_-_74421477_74421619	0.0180932	GLI3	ENST00000514871.1|RP11-247C2.2|ENSG00000248540.2|HCG2004779; Uncharacterized protein
hg19_v2_chr12_-_6798410_6798503	0.0176529	GLI3	ENST00000361959.3|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000436774.2|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000544482.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr17_-_79359021_79359029	0.0174014	GLI3	ENST00000572301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr3_-_72150005_72150035	0.0170792	GLI3	ENST00000462492.1|LINC00877|ENSG00000241163.3|long intergenic non-protein coding RNA 877
hg19_v2_chr5_-_132113036_132113061	0.0165762	GLI3	ENST00000378706.1|SEPT8|ENSG00000164402.9|septin 8
hg19_v2_chr15_+_75315896_75315956	0.0165605	GLI3	ENST00000342932.3|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000564923.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000569562.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase 	ENST00000568649.1|PPCDC|ENSG00000138621.7|phosphopantothenoylcysteine decarboxylase
hg19_v2_chr2_+_127656452_127656483	0.0164641	GLI3	ENST00000454927.2|AC114783.1|ENSG00000237524.3|Protein LOC339760
hg19_v2_chr9_+_126118449_126118539	0.0163558	GLI3	ENST00000359999.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila) 	ENST00000373631.3|CRB2|ENSG00000148204.7|crumbs homolog 2 (Drosophila)
hg19_v2_chr19_-_18197714_18197750	0.0162969	GLI3	ENST00000322153.7|IL12RB1|ENSG00000096996.11|interleukin 12 receptor, beta 1
hg19_v2_chr8_+_10383039_10383057	0.0155435	GLI3	ENST00000328655.3|PRSS55|ENSG00000184647.6|protease, serine, 55 	ENST00000522210.1|PRSS55|ENSG00000184647.6|protease, serine, 55
hg19_v2_chr9_+_15552867_15552907	0.0155394	GLI3	ENST00000535968.1|CCDC171|ENSG00000164989.11|coiled-coil domain containing 171
hg19_v2_chr11_-_8615720_8615836	0.015333	GLI3	ENST00000358872.3|STK33|ENSG00000130413.11|serine/threonine kinase 33 	ENST00000454443.2|STK33|ENSG00000130413.11|serine/threonine kinase 33
hg19_v2_chr5_+_150226085_150226085	0.015314	GLI3	ENST00000522154.1|IRGM|ENSG00000237693.4|immunity-related GTPase family, M
hg19_v2_chr20_-_52687059_52687143	0.0152738	GLI3	ENST00000371435.2|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1 	ENST00000395961.3|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chr1_+_17248418_17248445	0.0152538	GLI3	ENST00000375541.5|CROCC|ENSG00000058453.12|ciliary rootlet coiled-coil, rootletin
hg19_v2_chrX_-_34675391_34675411	0.0150144	GLI3	ENST00000275954.3|TMEM47|ENSG00000147027.3|transmembrane protein 47
hg19_v2_chr3_-_53925863_53926015	0.0149523	GLI3	ENST00000541726.1|SELK|ENSG00000113811.6|Selenoprotein K  	ENST00000495461.1|SELK|ENSG00000113811.6|Selenoprotein K
hg19_v2_chr2_-_204399976_204400011	0.0147674	GLI3	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr12_+_57984965_57985059	0.0145668	GLI3	ENST00000540759.2|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000551772.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000550465.1|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 	ENST00000354947.5|PIP4K2C|ENSG00000166908.13|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
hg19_v2_chr1_-_146040968_146040968	0.0141762	GLI3	ENST00000401010.3|NBPF11|ENSG00000152042.13|neuroblastoma breakpoint family, member 11
hg19_v2_chr6_+_28109703_28109716	0.0133401	GLI3	ENST00000457389.2|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8 	ENST00000330236.6|ZKSCAN8|ENSG00000198315.6|zinc finger with KRAB and SCAN domains 8
hg19_v2_chr14_+_103566665_103566665	0.0129394	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.3|exocyst complex component 3-like 4
hg19_v2_chr3_+_159733811_159733811	0.0127651	GLI3	ENST00000473137.1|CTD-2049J23.3|ENSG00000242107.1|long intergenic non-protein coding RNA 1100
hg19_v2_chr8_-_27468717_27468788	0.0119791	GLI3	ENST00000520796.1|CLU|ENSG00000120885.15|clusterin 	ENST00000520491.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chrX_-_64196307_64196338	0.0115907	GLI3	ENST00000545618.1|ZC4H2|ENSG00000126970.11|zinc finger, C4H2 domain containing
hg19_v2_chrX_-_9001351_9001351	0.0107288	GLI3	ENST00000362066.3|FAM9B|ENSG00000177138.11|family with sequence similarity 9, member B
hg19_v2_chr19_-_3480540_3480555	0.0106842	GLI3	ENST00000215531.4|C19orf77|ENSG00000095932.5|chromosome 19 open reading frame 77
hg19_v2_chr19_-_376011_376031	0.0103713	GLI3	ENST00000342640.4|THEG|ENSG00000105549.6|theg spermatid protein
hg19_v2_chr16_-_89556942_89557020	0.0101305	GLI3	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chrX_+_51636629_51636759	0.00997531	GLI3	ENST00000375722.1|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1 	ENST00000326587.7|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1 	ENST00000375695.2|MAGED1|ENSG00000179222.13|melanoma antigen family D, 1
hg19_v2_chrX_+_151883090_151883174	0.00995901	GLI3	ENST00000370293.2|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000423993.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000447530.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000458057.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000331220.2|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000422085.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000453150.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B 	ENST00000409560.1|MAGEA2B|ENSG00000183305.9|melanoma antigen family A, 2B
hg19_v2_chr17_-_80231557_80231607	0.00992174	GLI3	ENST00000392334.2|CSNK1D|ENSG00000141551.10|casein kinase 1, delta 	ENST00000314028.6|CSNK1D|ENSG00000141551.10|casein kinase 1, delta
hg19_v2_chr19_+_49496782_49496873	0.00977673	GLI3	ENST00000601968.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2 	ENST00000596837.1|RUVBL2|ENSG00000183207.8|RuvB-like AAA ATPase 2
hg19_v2_chr12_+_1800179_1800250	0.00882148	GLI3	ENST00000357103.4|ADIPOR2|ENSG00000006831.9|adiponectin receptor 2
hg19_v2_chr8_+_145218673_145218673	0.00874348	GLI3	ENST00000326134.5|MROH1|ENSG00000179832.13|maestro heat-like repeat family member 1
hg19_v2_chr17_-_79359046_79359058	0.00870172	GLI3	ENST00000574041.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr3_-_149293990_149294039	0.00826597	GLI3	ENST00000472417.1|WWTR1|ENSG00000018408.10|WW domain containing transcription regulator 1
hg19_v2_chr14_+_27342334_27342369	0.00819228	GLI3	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr10_-_6104253_6104288	0.00792421	GLI3	ENST00000256876.6|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha 	ENST00000379954.1|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha 	ENST00000379959.3|IL2RA|ENSG00000134460.11|interleukin 2 receptor, alpha
hg19_v2_chr4_-_46391567_46391580	0.00753725	GLI3	ENST00000507460.1|GABRA2|ENSG00000151834.11|gamma-aminobutyric acid (GABA) A receptor, alpha 2
hg19_v2_chr11_+_76777979_76778027	0.00747114	GLI3	ENST00000531028.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000278559.3|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000527066.1|CAPN5|ENSG00000149260.10|calpain 5 	ENST00000529629.1|CAPN5|ENSG00000149260.10|calpain 5
hg19_v2_chr8_-_144691718_144691784	0.00739837	GLI3	ENST00000377579.3|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000433751.1|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like 	ENST00000220966.6|PYCRL|ENSG00000104524.9|pyrroline-5-carboxylate reductase-like
hg19_v2_chr5_-_179636153_179636220	0.00727196	GLI3	ENST00000361132.4|RASGEF1C|ENSG00000146090.11|RasGEF domain family, member 1C
hg19_v2_chr3_-_135915401_135915439	0.00718378	GLI3	ENST00000491050.1|MSL2|ENSG00000174579.3|male-specific lethal 2 homolog (Drosophila)
hg19_v2_chr6_-_33547975_33547999	0.00706679	GLI3	ENST00000442998.2|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1 	ENST00000360661.5|BAK1|ENSG00000030110.8|BCL2-antagonist/killer 1
hg19_v2_chr12_-_56122426_56122458	0.00702137	GLI3	ENST00000551173.1|CD63|ENSG00000135404.7|CD63 molecule
hg19_v2_chr15_-_44092295_44092423	0.00697426	GLI3	ENST00000249714.3|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000299969.6|SERINC4|ENSG00000184716.9|serine incorporator 4 	ENST00000319327.6|SERINC4|ENSG00000184716.9|serine incorporator 4
hg19_v2_chr11_+_832804_832887	0.00689001	GLI3	ENST00000397420.3|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group) 	ENST00000525718.1|CD151|ENSG00000177697.13|CD151 molecule (Raph blood group)
hg19_v2_chr1_-_85040090_85040168	0.00659841	GLI3	ENST00000370630.5|CTBS|ENSG00000117151.8|chitobiase, di-N-acetyl-
hg19_v2_chr16_-_2260834_2260906	0.00557196	GLI3	ENST00000562360.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5 	ENST00000566018.1|BRICD5|ENSG00000182685.3|BRICHOS domain containing 5
hg19_v2_chr12_-_6798523_6798548	0.00496317	GLI3	ENST00000319770.3|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chrX_-_48056199_48056233	0.00427578	GLI3	ENST00000311798.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5 	ENST00000347757.1|SSX5|ENSG00000165583.9|synovial sarcoma, X breakpoint 5
hg19_v2_chr1_-_230991747_230991782	0.00385063	GLI3	ENST00000523410.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr19_-_53324884_53324922	0.00380827	GLI3	ENST00000457749.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000414252.2|ZNF28|ENSG00000198538.6|zinc finger protein 28 	ENST00000391783.2|ZNF28|ENSG00000198538.6|zinc finger protein 28
hg19_v2_chr17_-_7760457_7760587	0.0037433	GLI3	ENST00000576384.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr19_-_35626104_35626161	0.00350363	GLI3	ENST00000310123.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4 	ENST00000392225.3|LGI4|ENSG00000153902.9|leucine-rich repeat LGI family, member 4
hg19_v2_chr6_+_34204642_34204664	0.00342858	GLI3	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr5_-_162887071_162887166	0.00327623	GLI3	ENST00000302764.4|NUDCD2|ENSG00000170584.6|NudC domain containing 2
hg19_v2_chr6_-_56112235_56112267	0.00304756	GLI3	ENST00000370817.3|COL21A1|ENSG00000124749.12|collagen, type XXI, alpha 1
hg19_v2_chr12_-_6798025_6798102	0.00270659	GLI3	ENST00000542351.1|ZNF384|ENSG00000126746.13|zinc finger protein 384 	ENST00000538829.1|ZNF384|ENSG00000126746.13|zinc finger protein 384
hg19_v2_chr16_+_3508063_3508086	0.00260806	GLI3	ENST00000576787.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572942.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000576916.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000575076.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit 	ENST00000572131.1|NAA60|ENSG00000122390.13|N(alpha)-acetyltransferase 60, NatF catalytic subunit
hg19_v2_chr10_+_106028923_106028956	0.0024869	GLI3	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr5_-_154230130_154230210	0.00242662	GLI3	ENST00000519501.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000518651.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000517938.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2 	ENST00000520461.1|FAXDC2|ENSG00000170271.6|fatty acid hydroxylase domain containing 2
hg19_v2_chr11_+_76493294_76493332	0.00235797	GLI3	ENST00000533752.1|TSKU|ENSG00000182704.6|tsukushi, small leucine rich proteoglycan
hg19_v2_chr11_-_12030130_12030183	0.00232936	GLI3	ENST00000450094.2|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3 	ENST00000534511.1|DKK3|ENSG00000050165.13|dickkopf WNT signaling pathway inhibitor 3
hg19_v2_chr16_-_2318111_2318147	0.00232488	GLI3	ENST00000301730.8|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain 	ENST00000564822.1|RNPS1|ENSG00000205937.7|RNA binding protein S1, serine-rich domain
hg19_v2_chr3_-_128902759_128902770	0.00206601	GLI3	ENST00000422453.2|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000504813.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein 	ENST00000512338.1|CNBP|ENSG00000169714.12|CCHC-type zinc finger, nucleic acid binding protein
hg19_v2_chr16_-_52640834_52640847	0.00193961	GLI3	ENST00000510238.3|CASC16|ENSG00000249231.3|cancer susceptibility candidate 16 (non-protein coding)
hg19_v2_chr17_+_75450146_75450170	0.00186967	GLI3	ENST00000585929.1|SEPT9|ENSG00000184640.13|septin 9 	ENST00000590917.1|SEPT9|ENSG00000184640.13|septin 9
hg19_v2_chr8_-_38386175_38386180	0.00157827	GLI3	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr3_+_133118839_133118925	0.00147535	GLI3	ENST00000302334.2|BFSP2|ENSG00000170819.4|beaded filament structural protein 2, phakinin
hg19_v2_chr9_-_132404374_132404450	0.00139515	GLI3	ENST00000277459.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000450050.2|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6 	ENST00000277458.4|ASB6|ENSG00000148331.7|ankyrin repeat and SOCS box containing 6
hg19_v2_chr8_-_142011036_142011127	0.00131608	GLI3	ENST00000520892.1|PTK2|ENSG00000169398.15|protein tyrosine kinase 2
hg19_v2_chr15_-_31453359_31453476	0.0010462	GLI3	ENST00000542188.1|TRPM1|ENSG00000134160.9|transient receptor potential cation channel, subfamily M, member 1
hg19_v2_chr11_+_41736067_41736118	0.000828925	GLI3	ENST00000528720.1|RP11-375D13.2|ENSG00000255171.1|RP11-375D13.2
hg19_v2_chr2_-_68694390_68694434	0.000786989	GLI3	ENST00000377957.3|FBXO48|ENSG00000204923.3|F-box protein 48
hg19_v2_chr3_-_108476231_108476257	0.00058982	GLI3	ENST00000295755.6|RETNLB|ENSG00000163515.6|resistin like beta
hg19_v2_chr1_+_201951741_201951794	0.000347092	GLI3	ENST00000295640.4|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B) 	ENST00000367286.3|RNPEP|ENSG00000176393.6|arginyl aminopeptidase (aminopeptidase B)
hg19_v2_chrY_-_9323893_9323893	6.26992e-05	GLI3	ENST00000450145.1|AC006156.1|ENSG00000225516.2|Uncharacterized protein  	ENST00000423213.1|AC006156.1|ENSG00000225516.2|Uncharacterized protein
