hg19_v2_chr4_+_155484103_155484147	4.93592	LHX3	ENST00000302068.4|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr4_+_155484155_155484178	4.67774	LHX3	ENST00000509493.1|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr3_+_151591422_151591440	4.30467	LHX3	ENST00000362032.5|SUCNR1|ENSG00000198829.5|succinate receptor 1
hg19_v2_chr5_-_39274617_39274636	3.47374	LHX3	ENST00000510188.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr8_-_66750978_66750987	3.24586	LHX3	ENST00000523253.1|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr2_+_218994002_218994051	2.82288	LHX3	ENST00000428565.1|CXCR2|ENSG00000180871.3|chemokine (C-X-C motif) receptor 2
hg19_v2_chr12_-_10282681_10282741	2.65072	LHX3	ENST00000533022.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr7_-_36764062_36764124	2.60718	LHX3	ENST00000435386.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr19_+_14693888_14693955	2.59632	LHX3	ENST00000547437.1|CLEC17A|ENSG00000187912.7|C-type lectin domain family 17, member A 	ENST00000397439.2|CLEC17A|ENSG00000187912.7|C-type lectin domain family 17, member A 	ENST00000417570.1|CLEC17A|ENSG00000187912.7|C-type lectin domain family 17, member A
hg19_v2_chr2_+_135596180_135596193	2.59559	LHX3	ENST00000283054.4|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase 	ENST00000392928.1|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr12_-_10282742_10282817	2.55247	LHX3	ENST00000298523.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000396484.2|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000310002.4|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr7_-_36764142_36764157	2.53247	LHX3	ENST00000258749.5|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil) 	ENST00000535891.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr2_-_89160117_89160117	2.51207	LHX3	ENST00000390238.2|IGKJ5|ENSG00000211593.2|immunoglobulin kappa joining 5
hg19_v2_chr19_-_51920952_51921057	2.42536	LHX3	ENST00000356298.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000339313.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000529627.1|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000439889.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000353836.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000432469.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10
hg19_v2_chr12_-_10282836_10282863	2.29353	LHX3	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr3_+_186692745_186692824	2.21792	LHX3	ENST00000438590.1|ST6GAL1|ENSG00000073849.10|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
hg19_v2_chr20_-_7238861_7238933	2.13991	LHX3	ENST00000428954.1|RP11-19D2.1|ENSG00000238102.1|RP11-19D2.1
hg19_v2_chr2_+_135596106_135596137	2.09589	LHX3	ENST00000356140.5|ACMSD|ENSG00000153086.9|aminocarboxymuconate semialdehyde decarboxylase
hg19_v2_chr11_+_59824060_59824106	2.0823	LHX3	ENST00000395032.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 	ENST00000358152.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr3_+_63953415_63953430	2.07341	LHX3	ENST00000484332.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr1_-_92952433_92952489	1.97348	LHX3	ENST00000294702.5|GFI1|ENSG00000162676.7|growth factor independent 1 transcription repressor
hg19_v2_chr7_-_115799942_115799955	1.96565	LHX3	ENST00000484212.1|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr1_-_160549235_160549306	1.84719	LHX3	ENST00000368054.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368048.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000311224.4|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000368051.3|CD84|ENSG00000066294.10|CD84 molecule 	ENST00000534968.1|CD84|ENSG00000066294.10|CD84 molecule
hg19_v2_chr17_-_39093672_39093738	1.84261	LHX3	ENST00000209718.3|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible) 	ENST00000436344.3|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible) 	ENST00000485751.1|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible)
hg19_v2_chr20_+_5987890_5987904	1.83865	LHX3	ENST00000378868.4|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr1_-_150944411_150944443	1.80838	LHX3	ENST00000368949.4|CERS2|ENSG00000143418.15|ceramide synthase 2
hg19_v2_chr7_-_87342564_87342617	1.79449	LHX3	ENST00000265724.3|ABCB1|ENSG00000085563.10|ATP-binding cassette, sub-family B (MDR/TAP), member 1 	ENST00000416177.1|ABCB1|ENSG00000085563.10|ATP-binding cassette, sub-family B (MDR/TAP), member 1
hg19_v2_chr11_+_59824127_59824161	1.79217	LHX3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chrX_+_107288280_107288317	1.77772	LHX3	ENST00000458383.1|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr5_-_88120083_88120096	1.73998	LHX3	ENST00000509373.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr6_-_159466136_159466184	1.68499	LHX3	ENST00000367066.3|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein 	ENST00000326965.6|TAGAP|ENSG00000164691.12|T-cell activation RhoGTPase activating protein
hg19_v2_chr16_-_28634874_28634907	1.66909	LHX3	ENST00000395609.1|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 	ENST00000350842.4|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
hg19_v2_chr6_-_66417107_66417125	1.50456	LHX3	ENST00000370621.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000370618.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000503581.1|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000393380.2|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila)
hg19_v2_chr1_+_244214577_244214593	1.46967	LHX3	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr5_-_88120151_88120177	1.46765	LHX3	ENST00000506716.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr14_+_22959438_22959479	1.45709	LHX3	ENST00000390489.1|TRAJ48|ENSG00000211841.1|T cell receptor alpha joining 48
hg19_v2_chr2_-_145278475_145278621	1.44925	LHX3	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr4_-_36245561_36245601	1.42893	LHX3	ENST00000506189.1|ARAP2|ENSG00000047365.7|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg19_v2_chr19_+_50016411_50016531	1.32248	LHX3	ENST00000426395.3|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha 	ENST00000600273.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha 	ENST00000599988.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr5_-_173217916_173217929	1.31209	LHX3	ENST00000523617.1|CTB-43E15.4|ENSG00000254211.1|CTB-43E15.4
hg19_v2_chrX_+_9431324_9431371	1.304	LHX3	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr14_+_22963806_22963822	1.28416	LHX3	ENST00000390493.1|TRAJ44|ENSG00000211845.1|T cell receptor alpha joining 44
hg19_v2_chr9_-_128246769_128246780	1.26055	LHX3	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr6_+_130339710_130339745	1.24014	LHX3	ENST00000526087.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000533560.1|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila) 	ENST00000361794.2|L3MBTL3|ENSG00000198945.3|l(3)mbt-like 3 (Drosophila)
hg19_v2_chr12_+_59989918_59989965	1.1853	LHX3	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr12_-_118628315_118628348	1.16597	LHX3	ENST00000540561.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr17_-_27418537_27418537	1.15893	LHX3	ENST00000408971.2|TIAF1|ENSG00000221995.4|TGFB1-induced anti-apoptotic factor 1
hg19_v2_chr14_-_52436247_52436247	1.14867	LHX3	ENST00000597846.1|AL358333.1|ENSG00000267802.1|HCG2013195; Uncharacterized protein
hg19_v2_chr14_+_62164340_62164443	1.14825	LHX3	ENST00000557538.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) 	ENST00000539097.1|HIF1A|ENSG00000100644.12|hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)
hg19_v2_chr8_-_57123815_57123867	1.13729	LHX3	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr14_+_22465771_22465783	1.13231	LHX3	ENST00000390445.2|TRAV17|ENSG00000211797.2|T cell receptor alpha variable 17
hg19_v2_chr1_-_150208320_150208338	1.11836	LHX3	ENST00000534220.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr3_+_41236325_41236401	1.11706	LHX3	ENST00000426215.1|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa 	ENST00000405570.1|CTNNB1|ENSG00000168036.12|catenin (cadherin-associated protein), beta 1, 88kDa
hg19_v2_chr17_-_64225508_64225539	1.11454	LHX3	ENST00000205948.6|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr12_-_118628350_118628371	1.10598	LHX3	ENST00000537952.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000537822.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr10_+_104263743_104263836	1.07522	LHX3	ENST00000369902.3|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000369899.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila) 	ENST00000423559.2|SUFU|ENSG00000107882.7|suppressor of fused homolog (Drosophila)
hg19_v2_chr3_+_141106643_141106681	1.07441	LHX3	ENST00000514251.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr6_-_9933500_9933500	1.06265	LHX3	ENST00000492169.1|OFCC1|ENSG00000181355.16|orofacial cleft 1 candidate 1
hg19_v2_chr19_+_48949030_48949086	1.04278	LHX3	ENST00000253237.5|GRWD1|ENSG00000105447.8|glutamate-rich WD repeat containing 1
hg19_v2_chr1_-_150208412_150208467	1.02625	LHX3	ENST00000532744.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369114.5|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369115.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369116.4|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr1_+_66820058_66820083	1.02065	LHX3	ENST00000480109.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr5_-_173217931_173217955	1.00548	LHX3	ENST00000522731.1|CTB-43E15.4|ENSG00000254211.1|CTB-43E15.4
hg19_v2_chr12_-_78934441_78934474	0.994473	LHX3	ENST00000546865.1|RP11-171L9.1|ENSG00000257165.1|RP11-171L9.1	ENST00000547089.1|RP11-171L9.1|ENSG00000257165.1|RP11-171L9.1
hg19_v2_chr17_-_60142609_60142657	0.99035	LHX3	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chrX_+_107288197_107288212	0.990099	LHX3	ENST00000415430.3|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr5_-_88119580_88119605	0.977537	LHX3	ENST00000539796.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr1_-_150208363_150208386	0.958799	LHX3	ENST00000436748.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr4_-_41884620_41884663	0.912639	LHX3	ENST00000504870.1|LINC00682|ENSG00000245870.2|long intergenic non-protein coding RNA 682
hg19_v2_chr3_-_141747950_141748004	0.910346	LHX3	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr1_-_150208291_150208309	0.89563	LHX3	ENST00000533654.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr10_-_74283694_74283749	0.885647	LHX3	ENST00000398763.4|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000418483.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1 	ENST00000489666.2|MICU1|ENSG00000107745.12|mitochondrial calcium uptake 1
hg19_v2_chr19_+_50016610_50016658	0.866234	LHX3	ENST00000596975.1|FCGRT|ENSG00000104870.8|Fc fragment of IgG, receptor, transporter, alpha
hg19_v2_chr7_+_39017504_39017598	0.865797	LHX3	ENST00000403058.1|POU6F2|ENSG00000106536.15|POU class 6 homeobox 2
hg19_v2_chr19_+_48949087_48949116	0.863859	LHX3	ENST00000598711.1|GRWD1|ENSG00000105447.8|glutamate-rich WD repeat containing 1
hg19_v2_chrM_-_14670_14676	0.857037	LHX3	ENST00000361681.2|MT-ND6|ENSG00000198695.2|mitochondrially encoded NADH dehydrogenase 6
hg19_v2_chr2_-_8715616_8715650	0.85079	LHX3	ENST00000418358.1|AC011747.3|ENSG00000231435.1|AC011747.3
hg19_v2_chr17_-_38956205_38956214	0.836759	LHX3	ENST00000306658.7|KRT28|ENSG00000173908.8|keratin 28
hg19_v2_chr12_-_7656357_7656489	0.8367	LHX3	ENST00000396620.3|CD163|ENSG00000177575.8|CD163 molecule 	ENST00000432237.2|CD163|ENSG00000177575.8|CD163 molecule 	ENST00000359156.4|CD163|ENSG00000177575.8|CD163 molecule
hg19_v2_chr10_-_115904361_115904375	0.831692	LHX3	ENST00000428953.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118 	ENST00000543782.1|C10orf118|ENSG00000165813.12|chromosome 10 open reading frame 118
hg19_v2_chr11_-_67981046_67981159	0.82804	LHX3	ENST00000402789.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000402185.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000458496.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chrX_-_110655306_110655330	0.81629	LHX3	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr15_+_64680003_64680063	0.803831	LHX3	ENST00000261884.3|TRIP4|ENSG00000103671.5|thyroid hormone receptor interactor 4
hg19_v2_chr3_+_121902511_121902539	0.793761	LHX3	ENST00000490131.1|CASR|ENSG00000036828.9|calcium-sensing receptor
hg19_v2_chr4_+_95128748_95128794	0.788539	LHX3	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr3_+_68055366_68055385	0.784394	LHX3	ENST00000496687.1|FAM19A1|ENSG00000183662.6|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1
hg19_v2_chr2_-_99279928_99279942	0.772058	LHX3	ENST00000414521.2|MGAT4A|ENSG00000071073.8|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
hg19_v2_chr12_-_42631529_42631602	0.763951	LHX3	ENST00000548917.1|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr5_+_67586465_67586534	0.752513	LHX3	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr6_+_114178512_114178586	0.741188	LHX3	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr7_-_105332084_105332111	0.737915	LHX3	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chr1_-_24126023_24126049	0.733302	LHX3	ENST00000429356.1|GALE|ENSG00000117308.10|UDP-galactose-4-epimerase
hg19_v2_chr4_-_120243545_120243562	0.729037	LHX3	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr6_+_26104104_26104169	0.725921	LHX3	ENST00000377803.2|HIST1H4C|ENSG00000197061.3|histone cluster 1, H4c
hg19_v2_chr7_+_107224364_107224391	0.721149	LHX3	ENST00000491150.1|BCAP29|ENSG00000075790.6|B-cell receptor-associated protein 29
hg19_v2_chr4_-_23891693_23891706	0.720542	LHX3	ENST00000264867.2|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chr12_+_49740700_49740821	0.719277	LHX3	ENST00000549441.2|DNAJC22|ENSG00000178401.10|DnaJ (Hsp40) homolog, subfamily C, member 22 	ENST00000395069.3|DNAJC22|ENSG00000178401.10|DnaJ (Hsp40) homolog, subfamily C, member 22
hg19_v2_chr4_-_23891658_23891690	0.706191	LHX3	ENST00000507380.1|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chrX_+_107288239_107288259	0.6928	LHX3	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr4_+_113568207_113568367	0.688554	LHX3	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr11_-_67980744_67980882	0.687932	LHX3	ENST00000401547.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000453170.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000304363.4|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chrX_-_39186610_39186621	0.664069	LHX3	ENST00000429281.1|RP11-265P11.2|ENSG00000235304.1|RP11-265P11.2	ENST00000448597.1|RP11-265P11.2|ENSG00000235304.1|RP11-265P11.2
hg19_v2_chr15_+_48483736_48483962	0.659494	LHX3	ENST00000417307.2|CTXN2|ENSG00000233932.3|cortexin 2 	ENST00000559641.1|SLC12A1|ENSG00000074803.13|solute carrier family 12 (sodium/potassium/chloride transporter), member 1
hg19_v2_chr1_-_24126051_24126062	0.633047	LHX3	ENST00000445705.1|GALE|ENSG00000117308.10|UDP-galactose-4-epimerase
hg19_v2_chr9_-_215744_215893	0.626055	LHX3	ENST00000382387.2|C9orf66|ENSG00000183784.5|chromosome 9 open reading frame 66
hg19_v2_chr17_-_71223839_71223887	0.625086	LHX3	ENST00000579872.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A 	ENST00000580032.1|FAM104A|ENSG00000133193.8|family with sequence similarity 104, member A
hg19_v2_chr3_-_47517302_47517451	0.623614	LHX3	ENST00000441517.2|SCAP|ENSG00000114650.14|SREBF chaperone 	ENST00000545718.1|SCAP|ENSG00000114650.14|SREBF chaperone
hg19_v2_chr4_+_41937131_41937211	0.613815	LHX3	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr14_-_104408032_104408032	0.606806	LHX3	ENST00000455348.2|RD3L|ENSG00000227729.2|retinal degeneration 3-like
hg19_v2_chr19_-_43969796_43969813	0.587928	LHX3	ENST00000244333.3|LYPD3|ENSG00000124466.8|LY6/PLAUR domain containing 3
hg19_v2_chrX_+_108779004_108779015	0.583572	LHX3	ENST00000218004.1|NXT2|ENSG00000101888.7|nuclear transport factor 2-like export factor 2
hg19_v2_chr20_+_11008408_11008408	0.565798	LHX3	ENST00000378252.1|C20orf187|ENSG00000125899.6|chromosome 20 open reading frame 187
hg19_v2_chrX_-_106243294_106243313	0.564474	LHX3	ENST00000255495.7|MORC4|ENSG00000133131.10|MORC family CW-type zinc finger 4
hg19_v2_chr14_+_55494323_55494345	0.55849	LHX3	ENST00000339298.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr13_-_81801115_81801122	0.547574	LHX3	ENST00000567258.1|LINC00564|ENSG00000260094.1|long intergenic non-protein coding RNA 564
hg19_v2_chr1_+_115572415_115572451	0.535398	LHX3	ENST00000256592.1|TSHB|ENSG00000134200.2|thyroid stimulating hormone, beta
hg19_v2_chr10_-_90611566_90611608	0.524744	LHX3	ENST00000371930.4|ANKRD22|ENSG00000152766.5|ankyrin repeat domain 22
hg19_v2_chr17_+_35851570_35851667	0.517486	LHX3	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr1_+_168250194_168250278	0.497319	LHX3	ENST00000367821.3|TBX19|ENSG00000143178.8|T-box 19
hg19_v2_chr5_+_179135246_179135327	0.494622	LHX3	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chr16_-_1538765_1538982	0.490339	LHX3	ENST00000447419.2|PTX4|ENSG00000251692.3|pentraxin 4, long 	ENST00000440447.2|PTX4|ENSG00000251692.3|pentraxin 4, long
hg19_v2_chr3_+_69812877_69812962	0.488597	LHX3	ENST00000457080.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000328528.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr5_+_126984710_126984752	0.487913	LHX3	ENST00000379445.3|CTXN3|ENSG00000205279.4|cortexin 3
hg19_v2_chr19_-_11457162_11457194	0.48176	LHX3	ENST00000590482.1|TMEM205|ENSG00000105518.9|transmembrane protein 205
hg19_v2_chr11_-_559377_559393	0.475585	LHX3	ENST00000486629.1|C11orf35|ENSG00000185522.4|chromosome 11 open reading frame 35
hg19_v2_chr3_+_138340067_138340080	0.474983	LHX3	ENST00000479848.1|FAIM|ENSG00000158234.8|Fas apoptotic inhibitory molecule
hg19_v2_chr19_+_11457175_11457224	0.45991	LHX3	ENST00000458408.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000586451.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000588592.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chr18_+_72201664_72201703	0.458727	LHX3	ENST00000358821.3|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chr10_-_27529486_27529497	0.443872	LHX3	ENST00000375888.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr2_+_185463093_185463181	0.439878	LHX3	ENST00000302277.6|ZNF804A|ENSG00000170396.6|zinc finger protein 804A
hg19_v2_chr14_+_55493920_55494013	0.438673	LHX3	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr6_-_138833630_138833677	0.436298	LHX3	ENST00000533765.1|NHSL1|ENSG00000135540.7|NHS-like 1
hg19_v2_chr6_-_47445214_47445308	0.427324	LHX3	ENST00000604014.1|RP11-385F7.1|ENSG00000270761.1|RP11-385F7.1
hg19_v2_chr8_-_25281747_25281779	0.424367	LHX3	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chrX_-_106243451_106243490	0.420179	LHX3	ENST00000355610.4|MORC4|ENSG00000133131.10|MORC family CW-type zinc finger 4 	ENST00000535534.1|MORC4|ENSG00000133131.10|MORC family CW-type zinc finger 4
hg19_v2_chr17_-_10372875_10372876	0.39916	LHX3	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr8_+_119294456_119294486	0.39108	LHX3	ENST00000366457.2|AC023590.1|ENSG00000225885.2|Uncharacterized protein
hg19_v2_chr2_+_234826016_234826050	0.38404	LHX3	ENST00000324695.4|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8 	ENST00000433712.2|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8
hg19_v2_chr14_-_107049312_107049341	0.376689	LHX3	ENST00000390627.2|IGHV3-53|ENSG00000211967.2|immunoglobulin heavy variable 3-53
hg19_v2_chr10_+_106937525_106937525	0.373073	LHX3	ENST00000369699.4|SORCS3|ENSG00000156395.8|sortilin-related VPS10 domain containing receptor 3
hg19_v2_chr14_+_39583427_39583542	0.356467	LHX3	ENST00000308317.6|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000396249.2|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000250379.8|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000534684.2|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2 	ENST00000527381.1|GEMIN2|ENSG00000092208.12|gem (nuclear organelle) associated protein 2
hg19_v2_chr12_+_40787194_40787197	0.354054	LHX3	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr5_-_78809950_78810040	0.351227	LHX3	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr4_+_158141899_158141980	0.341438	LHX3	ENST00000264426.9|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000506284.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr3_+_138340049_138340056	0.336832	LHX3	ENST00000464668.1|FAIM|ENSG00000158234.8|Fas apoptotic inhibitory molecule
hg19_v2_chrM_+_10464_10480	0.334577	LHX3	ENST00000361335.1|MT-ND4L|ENSG00000212907.2|mitochondrially encoded NADH dehydrogenase 4L
hg19_v2_chr19_+_11457232_11457257	0.327915	LHX3	ENST00000587531.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chrX_+_84258832_84258915	0.30625	LHX3	ENST00000373173.2|APOOL|ENSG00000155008.9|apolipoprotein O-like
hg19_v2_chr18_+_28956740_28956846	0.302187	LHX3	ENST00000308128.4|DSG4|ENSG00000175065.7|desmoglein 4 	ENST00000359747.4|DSG4|ENSG00000175065.7|desmoglein 4
hg19_v2_chr14_-_106668095_106668116	0.297272	LHX3	ENST00000390606.2|IGHV3-20|ENSG00000211946.2|immunoglobulin heavy variable 3-20
hg19_v2_chr15_-_20193370_20193370	0.289888	LHX3	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg19_v2_chr15_-_75748115_75748126	0.289816	LHX3	ENST00000360439.4|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr19_+_9296279_9296279	0.283123	LHX3	ENST00000344248.2|OR7D2|ENSG00000188000.2|olfactory receptor, family 7, subfamily D, member 2
hg19_v2_chr7_-_122840015_122840040	0.281885	LHX3	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr16_+_28565230_28565257	0.281579	LHX3	ENST00000317058.3|CCDC101|ENSG00000176476.4|coiled-coil domain containing 101
hg19_v2_chr8_+_91233750_91233766	0.272527	LHX3	ENST00000523406.1|LINC00534|ENSG00000253394.1|long intergenic non-protein coding RNA 534
hg19_v2_chr12_+_4385230_4385295	0.272503	LHX3	ENST00000536537.1|CCND2|ENSG00000118971.3|cyclin D2
hg19_v2_chr13_+_113301358_113301358	0.27041	LHX3	ENST00000356049.1|C13orf35|ENSG00000197595.1|chromosome 13 open reading frame 35
hg19_v2_chr1_-_45988542_45988719	0.263397	LHX3	ENST00000424390.1|PRDX1|ENSG00000117450.9|peroxiredoxin 1
hg19_v2_chr7_-_15014398_15014409	0.25954	LHX3	ENST00000437998.1|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr16_+_15489629_15489644	0.258209	LHX3	ENST00000396385.3|MPV17L|ENSG00000156968.8|MPV17 mitochondrial membrane protein-like
hg19_v2_chr16_+_72459838_72459857	0.256179	LHX3	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr16_+_89334512_89334512	0.251793	LHX3	ENST00000602042.1|AC137932.1|ENSG00000268218.1|AC137932.1
hg19_v2_chr4_+_74301880_74301964	0.248061	LHX3	ENST00000395792.2|AFP|ENSG00000081051.3|alpha-fetoprotein 	ENST00000226359.2|AFP|ENSG00000081051.3|alpha-fetoprotein
hg19_v2_chr20_-_656823_656902	0.247383	LHX3	ENST00000246104.6|SCRT2|ENSG00000215397.3|scratch family zinc finger 2
hg19_v2_chr11_-_5799897_5799897	0.242996	LHX3	ENST00000317093.2|OR52N5|ENSG00000181009.4|olfactory receptor, family 52, subfamily N, member 5
hg19_v2_chr19_-_6279932_6280000	0.23562	LHX3	ENST00000252674.7|MLLT1|ENSG00000130382.7|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
hg19_v2_chr4_+_158142750_158142836	0.230107	LHX3	ENST00000505888.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000449365.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr6_+_23337918_23337939	0.227612	LHX3	ENST00000431001.1|RP11-439H9.1|ENSG00000235743.1|RP11-439H9.1
hg19_v2_chr1_-_182640988_182641033	0.222843	LHX3	ENST00000367556.1|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr11_-_327537_327537	0.21686	LHX3	ENST00000602735.1|IFITM3|ENSG00000142089.11|interferon induced transmembrane protein 3
hg19_v2_chr6_-_49712091_49712107	0.21032	LHX3	ENST00000371159.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr18_+_72201829_72201845	0.208481	LHX3	ENST00000582365.1|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chr12_-_53994805_53994817	0.20628	LHX3	ENST00000328463.7|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chrX_+_24167746_24167811	0.199216	LHX3	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr18_+_6774000_6774019	0.197981	LHX3	ENST00000532723.1|ARHGAP28|ENSG00000088756.8|Rho GTPase activating protein 28
hg19_v2_chr5_+_55149150_55149200	0.196438	LHX3	ENST00000297015.3|IL31RA|ENSG00000164509.9|interleukin 31 receptor A
hg19_v2_chr5_-_59783882_59783910	0.195815	LHX3	ENST00000505507.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000502484.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr12_-_11287243_11287243	0.194225	LHX3	ENST00000539585.1|TAS2R30|ENSG00000256188.1|taste receptor, type 2, member 30
hg19_v2_chr14_-_57197224_57197273	0.154166	LHX3	ENST00000554597.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein  	ENST00000556696.1|RP11-1085N6.3|ENSG00000259133.1|Uncharacterized protein
hg19_v2_chr2_-_14541060_14541087	0.150005	LHX3	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr2_-_231860596_231860757	0.147598	LHX3	ENST00000441063.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000434094.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000418330.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000457803.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000414876.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000446741.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000426904.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head)
hg19_v2_chr4_+_71384257_71384295	0.131088	LHX3	ENST00000339336.4|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr5_+_59783941_59784066	0.12354	LHX3	ENST00000506884.1|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding) 	ENST00000504876.2|PART1|ENSG00000152931.7|prostate androgen-regulated transcript 1 (non-protein coding)
hg19_v2_chr4_+_71384300_71384314	0.121899	LHX3	ENST00000504451.1|AMTN|ENSG00000187689.5|amelotin
hg19_v2_chr12_-_52761262_52761267	0.111114	LHX3	ENST00000257901.3|KRT85|ENSG00000135443.4|keratin 85
hg19_v2_chr1_-_182641037_182641068	0.093816	LHX3	ENST00000483095.2|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr1_-_57285038_57285048	0.0855024	LHX3	ENST00000343433.6|C1orf168|ENSG00000187889.8|chromosome 1 open reading frame 168
hg19_v2_chr4_-_68829226_68829237	0.0852585	LHX3	ENST00000396188.2|TMPRSS11A|ENSG00000187054.10|transmembrane protease, serine 11A
hg19_v2_chr15_-_75748143_75748183	0.0832689	LHX3	ENST00000568431.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568309.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000568190.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000570115.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A 	ENST00000564778.1|SIN3A|ENSG00000169375.11|SIN3 transcription regulator family member A
hg19_v2_chr15_+_86686953_86686953	0.0811712	LHX3	ENST00000421325.2|AGBL1|ENSG00000166748.8|ATP/GTP binding protein-like 1
hg19_v2_chr2_+_78143006_78143060	0.0746084	LHX3	ENST00000443419.1|AC073628.1|ENSG00000233605.1|AC073628.1
hg19_v2_chr16_-_52061283_52061283	0.0679629	LHX3	ENST00000566314.1|C16orf97|ENSG00000261190.1|chromosome 16 open reading frame 97
hg19_v2_chr4_-_41749724_41749795	0.0595123	LHX3	ENST00000510424.1|PHOX2B|ENSG00000109132.5|paired-like homeobox 2b
hg19_v2_chr4_-_103940791_103940896	0.0569608	LHX3	ENST00000510559.1|SLC9B1|ENSG00000164037.12|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 	ENST00000394789.3|SLC9B1|ENSG00000164037.12|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 	ENST00000296422.7|SLC9B1|ENSG00000164037.12|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
hg19_v2_chr11_+_5009424_5009424	0.0562674	LHX3	ENST00000300762.1|MMP26|ENSG00000167346.3|matrix metallopeptidase 26
hg19_v2_chr18_-_5197501_5197504	0.0469397	LHX3	ENST00000580650.1|C18orf42|ENSG00000231824.3|chromosome 18 open reading frame 42
hg19_v2_chr6_-_49712147_49712158	0.0459105	LHX3	ENST00000433368.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3 	ENST00000354620.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr4_-_68829144_68829224	0.0421342	LHX3	ENST00000508048.1|TMPRSS11A|ENSG00000187054.10|transmembrane protease, serine 11A
hg19_v2_chr15_-_99057551_99057611	0.0407777	LHX3	ENST00000558256.1|FAM169B|ENSG00000185087.7|family with sequence similarity 169, member B
hg19_v2_chrM_+_14741_14767	0.0400609	LHX3	ENST00000361789.2|MT-CYB|ENSG00000198727.2|mitochondrially encoded cytochrome b
hg19_v2_chr10_+_696000_696035	0.0391657	LHX3	ENST00000381489.5|PRR26|ENSG00000180525.9|proline rich 26
hg19_v2_chr11_+_327171_327415	0.0344964	LHX3	ENST00000534483.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000524824.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12	ENST00000531076.1|RP11-326C3.12|ENSG00000255328.1|RP11-326C3.12
hg19_v2_chr7_-_22862406_22862445	0.0326426	LHX3	ENST00000372879.4|TOMM7|ENSG00000196683.6|translocase of outer mitochondrial membrane 7 homolog (yeast)
hg19_v2_chr6_-_49712072_49712088	0.0280922	LHX3	ENST00000423399.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr3_+_157827841_157827916	0.0218012	LHX3	ENST00000295930.3|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000471994.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000464171.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000312179.6|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000475278.2|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1
hg19_v2_chr3_-_141719195_141719215	0.0215209	LHX3	ENST00000397991.4|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr11_-_74800799_74800799	0.0144846	LHX3	ENST00000305159.3|OR2AT4|ENSG00000171561.3|olfactory receptor, family 2, subfamily AT, member 4
hg19_v2_chrX_-_19504642_19504642	0.00080872	LHX3	ENST00000469203.2|MAP3K15|ENSG00000180815.10|mitogen-activated protein kinase kinase kinase 15
