hg19_v2_chrX_-_15332665_15332693	4.33505	MSX2	ENST00000537676.1|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11 	ENST00000344384.4|ASB11|ENSG00000165192.9|ankyrin repeat and SOCS box containing 11
hg19_v2_chrX_-_21676442_21676453	3.60033	MSX2	ENST00000379499.2|KLHL34|ENSG00000185915.4|kelch-like family member 34
hg19_v2_chr8_+_1993152_1993168	3.4867	MSX2	ENST00000262113.4|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr6_-_139613269_139613280	3.23726	MSX2	ENST00000358430.3|TXLNB|ENSG00000164440.10|taxilin beta
hg19_v2_chr14_+_32798462_32798539	3.21079	MSX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr8_+_1993173_1993199	3.16444	MSX2	ENST00000523438.1|MYOM2|ENSG00000036448.5|myomesin 2
hg19_v2_chr14_+_32798547_32798606	3.14827	MSX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr6_+_53948221_53948259	2.91067	MSX2	ENST00000460844.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chrX_+_130192318_130192331	2.72599	MSX2	ENST00000370922.1|ARHGAP36|ENSG00000147256.6|Rho GTPase activating protein 36
hg19_v2_chr6_+_53948328_53948338	2.65706	MSX2	ENST00000370876.2|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr4_-_109684120_109684217	2.52918	MSX2	ENST00000512646.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000411864.2|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000296486.3|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase 	ENST00000510706.1|ETNPPL|ENSG00000164089.4|ethanolamine-phosphate phospho-lyase
hg19_v2_chr22_+_17956618_17956637	2.45207	MSX2	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr10_-_72142345_72142395	1.78917	MSX2	ENST00000373224.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000446961.1|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000358141.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20 	ENST00000357631.2|LRRC20|ENSG00000172731.9|leucine rich repeat containing 20
hg19_v2_chr11_-_13517565_13517728	1.57668	MSX2	ENST00000282091.1|PTH|ENSG00000152266.2|parathyroid hormone 	ENST00000529816.1|PTH|ENSG00000152266.2|parathyroid hormone
hg19_v2_chr1_+_152943122_152943142	1.40453	MSX2	ENST00000328051.2|SPRR4|ENSG00000184148.3|small proline-rich protein 4
hg19_v2_chr15_+_41245160_41245347	1.27674	MSX2	ENST00000444189.2|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli) 	ENST00000446533.3|CHAC1|ENSG00000128965.7|ChaC, cation transport regulator homolog 1 (E. coli)
hg19_v2_chr1_+_202317855_202317864	1.25779	MSX2	ENST00000356764.2|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr17_-_10372875_10372876	1.20244	MSX2	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr9_+_124329336_124329406	1.16415	MSX2	ENST00000394340.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000436835.1|DAB2IP|ENSG00000136848.12|DAB2 interacting protein 	ENST00000259371.2|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr7_-_88425025_88425046	1.15598	MSX2	ENST00000297203.2|C7orf62|ENSG00000164645.2|chromosome 7 open reading frame 62
hg19_v2_chr5_+_95998070_95998179	1.13687	MSX2	ENST00000421689.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000510756.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000512620.1|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr7_-_100183742_100183781	1.09277	MSX2	ENST00000310300.6|LRCH4|ENSG00000077454.11|leucine-rich repeats and calponin homology (CH) domain containing 4
hg19_v2_chr20_+_56964169_56964182	1.08883	MSX2	ENST00000475243.1|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr1_-_151762943_151763012	1.05539	MSX2	ENST00000368825.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368823.1|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000458431.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368827.6|TDRKH|ENSG00000182134.11|tudor and KH domain containing 	ENST00000368824.3|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr19_+_46236509_46236509	1.0147	MSX2	ENST00000457052.2|AC074212.3|ENSG00000237452.2|Uncharacterized protein
hg19_v2_chr6_+_78400375_78400375	0.999122	MSX2	ENST00000602452.2|MEI4|ENSG00000269964.2|meiosis-specific 4 homolog (S. cerevisiae)
hg19_v2_chr13_-_103389159_103389159	0.967873	MSX2	ENST00000322527.2|CCDC168|ENSG00000175820.2|coiled-coil domain containing 168
hg19_v2_chr5_-_132200477_132200477	0.965677	MSX2	ENST00000296875.2|GDF9|ENSG00000164404.4|growth differentiation factor 9
hg19_v2_chr5_+_140557371_140557371	0.960587	MSX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr8_+_9413410_9413451	0.953612	MSX2	ENST00000520408.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000310430.6|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 	ENST00000522110.1|TNKS|ENSG00000173273.11|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
hg19_v2_chr6_+_34204642_34204664	0.952249	MSX2	ENST00000347617.6|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000401473.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000311487.5|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000447654.1|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1 	ENST00000395004.3|HMGA1|ENSG00000137309.15|high mobility group AT-hook 1
hg19_v2_chr1_-_151762900_151762910	0.935806	MSX2	ENST00000440583.2|TDRKH|ENSG00000182134.11|tudor and KH domain containing
hg19_v2_chr3_-_114866084_114866118	0.922689	MSX2	ENST00000357258.3|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr4_-_46996424_46996424	0.918091	MSX2	ENST00000264318.3|GABRA4|ENSG00000109158.6|gamma-aminobutyric acid (GABA) A receptor, alpha 4
hg19_v2_chr4_-_138453606_138453673	0.896358	MSX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr18_+_5748793_5748820	0.850509	MSX2	ENST00000566533.1|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1	ENST00000562452.2|RP11-945C19.1|ENSG00000261738.2|RP11-945C19.1
hg19_v2_chr6_-_167040731_167040745	0.850279	MSX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr4_-_88449771_88449925	0.838155	MSX2	ENST00000535835.1|SPARCL1|ENSG00000152583.8|SPARC-like 1 (hevin)
hg19_v2_chr17_+_12569306_12569344	0.803393	MSX2	ENST00000425538.1|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr4_-_69536346_69536371	0.802249	MSX2	ENST00000338206.5|UGT2B15|ENSG00000196620.4|UDP glucuronosyltransferase 2 family, polypeptide B15
hg19_v2_chr1_-_21377383_21377395	0.793745	MSX2	ENST00000374935.3|EIF4G3|ENSG00000075151.15|eukaryotic translation initiation factor 4 gamma, 3
hg19_v2_chr5_+_95997918_95998007	0.792467	MSX2	ENST00000395812.2|CAST|ENSG00000153113.19|calpastatin 	ENST00000395813.1|CAST|ENSG00000153113.19|calpastatin 	ENST00000359176.4|CAST|ENSG00000153113.19|calpastatin 	ENST00000325674.7|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr16_-_52061283_52061283	0.791875	MSX2	ENST00000566314.1|C16orf97|ENSG00000261190.1|chromosome 16 open reading frame 97
hg19_v2_chr7_+_100183927_100183957	0.778042	MSX2	ENST00000241071.6|FBXO24|ENSG00000106336.8|F-box protein 24 	ENST00000360609.2|FBXO24|ENSG00000106336.8|F-box protein 24
hg19_v2_chr1_-_232651312_232651312	0.771238	MSX2	ENST00000262861.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr1_-_36916066_36916092	0.766372	MSX2	ENST00000315643.9|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr5_+_95997885_95997914	0.751766	MSX2	ENST00000511097.2|CAST|ENSG00000153113.19|calpastatin
hg19_v2_chr18_-_48346298_48346391	0.750706	MSX2	ENST00000398439.3|MRO|ENSG00000134042.8|maestro
hg19_v2_chr1_-_94050668_94050724	0.749989	MSX2	ENST00000539242.1|BCAR3|ENSG00000137936.12|breast cancer anti-estrogen resistance 3
hg19_v2_chr20_+_31805131_31805166	0.727621	MSX2	ENST00000375454.3|BPIFA3|ENSG00000131059.7|BPI fold containing family A, member 3 	ENST00000375452.3|BPIFA3|ENSG00000131059.7|BPI fold containing family A, member 3
hg19_v2_chr1_-_36916011_36916057	0.723782	MSX2	ENST00000356637.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000354267.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1 	ENST00000235532.5|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr6_-_167040693_167040725	0.717117	MSX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr1_-_36915880_36916004	0.691227	MSX2	ENST00000445843.3|OSCP1|ENSG00000116885.14|organic solute carrier partner 1
hg19_v2_chr3_+_140396881_140396887	0.687541	MSX2	ENST00000286349.3|TRIM42|ENSG00000155890.3|tripartite motif containing 42
hg19_v2_chr1_-_8877692_8877732	0.682285	MSX2	ENST00000400908.2|RERE|ENSG00000142599.13|arginine-glutamic acid dipeptide (RE) repeats
hg19_v2_chr18_+_63273310_63273326	0.679799	MSX2	ENST00000579862.1|RP11-775G23.1|ENSG00000265217.1|RP11-775G23.1
hg19_v2_chrX_+_89176881_89176955	0.667643	MSX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr1_+_202317815_202317854	0.660774	MSX2	ENST00000608999.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000336894.4|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B 	ENST00000480184.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr20_+_56964253_56964369	0.657302	MSX2	ENST00000395802.3|VAPB|ENSG00000124164.11|VAMP (vesicle-associated membrane protein)-associated protein B and C
hg19_v2_chr12_-_10955226_10955226	0.65502	MSX2	ENST00000240687.2|TAS2R7|ENSG00000121377.2|taste receptor, type 2, member 7
hg19_v2_chr19_+_42817450_42817493	0.646459	MSX2	ENST00000301204.3|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr2_-_200335983_200335994	0.643584	MSX2	ENST00000457245.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr14_-_23504337_23504369	0.614354	MSX2	ENST00000361611.6|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chr3_-_164796269_164796290	0.612935	MSX2	ENST00000264382.3|SI|ENSG00000090402.3|sucrase-isomaltase (alpha-glucosidase)
hg19_v2_chr6_+_25652432_25652485	0.597947	MSX2	ENST00000377961.2|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chr7_+_130794846_130794873	0.596479	MSX2	ENST00000421797.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr8_+_92261516_92261555	0.59106	MSX2	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr20_-_50418947_50418964	0.586921	MSX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr8_-_117886563_117886605	0.58611	MSX2	ENST00000519837.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe) 	ENST00000522699.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr4_-_138453559_138453572	0.582815	MSX2	ENST00000511115.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr10_+_99205959_99205981	0.579021	MSX2	ENST00000352634.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000353979.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370842.2|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000345745.5|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr5_+_31532373_31532479	0.562111	MSX2	ENST00000325366.9|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000355907.3|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22 	ENST00000507818.2|C5orf22|ENSG00000082213.13|chromosome 5 open reading frame 22
hg19_v2_chr20_-_50419055_50419066	0.559103	MSX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr14_-_23504432_23504448	0.553922	MSX2	ENST00000425762.2|PSMB5|ENSG00000100804.14|proteasome (prosome, macropain) subunit, beta type, 5
hg19_v2_chrX_+_77154935_77155012	0.547462	MSX2	ENST00000481445.1|COX7B|ENSG00000131174.4|cytochrome c oxidase subunit VIIb
hg19_v2_chr11_-_123814580_123814580	0.545408	MSX2	ENST00000321252.2|OR6T1|ENSG00000181499.2|olfactory receptor, family 6, subfamily T, member 1
hg19_v2_chr16_+_69345243_69345312	0.538247	MSX2	ENST00000254950.11|VPS4A|ENSG00000132612.14|vacuolar protein sorting 4 homolog A (S. cerevisiae)
hg19_v2_chr19_-_47137942_47137942	0.512626	MSX2	ENST00000300873.4|GNG8|ENSG00000167414.4|guanine nucleotide binding protein (G protein), gamma 8
hg19_v2_chr7_+_130794878_130794899	0.501746	MSX2	ENST00000416992.2|MKLN1|ENSG00000128585.13|muskelin 1, intracellular mediator containing kelch motifs
hg19_v2_chr9_-_95056010_95056038	0.496527	MSX2	ENST00000443024.2|IARS|ENSG00000196305.13|isoleucyl-tRNA synthetase
hg19_v2_chr4_-_46126093_46126106	0.493783	MSX2	ENST00000295452.4|GABRG1|ENSG00000163285.7|gamma-aminobutyric acid (GABA) A receptor, gamma 1
hg19_v2_chr17_-_12920907_12920987	0.493262	MSX2	ENST00000609757.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000581499.2|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2 	ENST00000580504.1|ELAC2|ENSG00000006744.14|elaC ribonuclease Z 2
hg19_v2_chr1_+_244515930_244515950	0.492894	MSX2	ENST00000366537.1|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100 	ENST00000308105.4|C1orf100|ENSG00000173728.6|chromosome 1 open reading frame 100
hg19_v2_chr6_+_25652501_25652632	0.489412	MSX2	ENST00000334979.6|SCGN|ENSG00000079689.9|secretagogin, EF-hand calcium binding protein
hg19_v2_chrX_-_139587225_139587234	0.487131	MSX2	ENST00000370536.2|SOX3|ENSG00000134595.6|SRY (sex determining region Y)-box 3
hg19_v2_chr19_-_19249255_19249322	0.482548	MSX2	ENST00000587583.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000450333.2|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587096.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000162044.9|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000592369.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A 	ENST00000587915.1|TMEM161A|ENSG00000064545.10|transmembrane protein 161A
hg19_v2_chr5_-_31532160_31532221	0.482251	MSX2	ENST00000511367.2|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III 	ENST00000513349.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr8_-_117886612_117886673	0.478266	MSX2	ENST00000520992.1|RAD21|ENSG00000164754.8|RAD21 homolog (S. pombe)
hg19_v2_chr6_-_111927449_111927482	0.477572	MSX2	ENST00000368761.5|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000392556.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2 	ENST00000340026.6|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr17_-_43045439_43045439	0.468642	MSX2	ENST00000253407.3|C1QL1|ENSG00000131094.3|complement component 1, q subcomponent-like 1
hg19_v2_chr12_+_64798826_64798936	0.467606	MSX2	ENST00000540203.1|XPOT|ENSG00000184575.7|exportin, tRNA
hg19_v2_chr3_+_147795932_147795948	0.457244	MSX2	ENST00000490465.1|RP11-639B1.1|ENSG00000241131.1|RP11-639B1.1
hg19_v2_chr12_-_95397442_95397546	0.449689	MSX2	ENST00000547157.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000547986.1|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENST00000327772.2|NDUFA12|ENSG00000184752.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
hg19_v2_chr1_+_151735431_151735446	0.435928	MSX2	ENST00000321531.5|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3 	ENST00000315067.8|OAZ3|ENSG00000143450.10|ornithine decarboxylase antizyme 3
hg19_v2_chr20_-_50418972_50419029	0.435192	MSX2	ENST00000395997.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr1_-_190446759_190446774	0.432291	MSX2	ENST00000367462.3|BRINP3|ENSG00000162670.8|bone morphogenetic protein/retinoic acid inducible neural-specific 3
hg19_v2_chr11_-_40315640_40315684	0.415032	MSX2	ENST00000278198.2|LRRC4C|ENSG00000148948.3|leucine rich repeat containing 4C
hg19_v2_chr19_-_46088068_46088100	0.395689	MSX2	ENST00000263275.4|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) 	ENST00000323060.3|OPA3|ENSG00000125741.4|optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)
hg19_v2_chr6_-_111927062_111927125	0.395144	MSX2	ENST00000359831.4|TRAF3IP2|ENSG00000056972.14|TRAF3 interacting protein 2
hg19_v2_chr5_+_140797296_140797427	0.392542	MSX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr2_-_73460334_73460405	0.391559	MSX2	ENST00000258083.2|PRADC1|ENSG00000135617.3|protease-associated domain containing 1
hg19_v2_chr18_+_39535239_39535383	0.385312	MSX2	ENST00000585528.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr14_-_36990061_36990154	0.383882	MSX2	ENST00000546983.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr7_+_91570165_91570197	0.361108	MSX2	ENST00000356239.3|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000359028.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9 	ENST00000358100.2|AKAP9|ENSG00000127914.12|A kinase (PRKA) anchor protein 9
hg19_v2_chr8_-_12612962_12613049	0.35533	MSX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr11_-_124190184_124190184	0.354995	MSX2	ENST00000357438.2|OR8D2|ENSG00000197263.2|olfactory receptor, family 8, subfamily D, member 2
hg19_v2_chr9_-_107299137_107299137	0.354187	MSX2	ENST00000374781.2|OR13C3|ENSG00000204246.2|olfactory receptor, family 13, subfamily C, member 3
hg19_v2_chr2_+_172864490_172864490	0.35269	MSX2	ENST00000315796.4|METAP1D|ENSG00000172878.9|methionyl aminopeptidase type 1D (mitochondrial)
hg19_v2_chr20_-_54967187_54967393	0.348927	MSX2	ENST00000422322.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000371356.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000451915.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000347343.2|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395911.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395907.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000441357.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000456249.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000420474.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395909.4|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395914.1|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000312783.6|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395915.3|AURKA|ENSG00000087586.13|aurora kinase A 	ENST00000395913.3|AURKA|ENSG00000087586.13|aurora kinase A
hg19_v2_chr12_-_57039739_57039798	0.324125	MSX2	ENST00000552959.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000551020.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000553007.2|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552919.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000552104.1|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide 	ENST00000262030.3|ATP5B|ENSG00000110955.4|ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
hg19_v2_chr1_-_197115818_197115829	0.321188	MSX2	ENST00000367409.4|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila) 	ENST00000294732.7|ASPM|ENSG00000066279.12|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)
hg19_v2_chr2_+_187371440_187371567	0.320758	MSX2	ENST00000445547.1|ZC3H15|ENSG00000065548.13|zinc finger CCCH-type containing 15
hg19_v2_chr11_-_71823796_71823826	0.314476	MSX2	ENST00000545680.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000543587.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000538393.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535234.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000227618.4|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000535503.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr12_+_28410128_28410133	0.305003	MSX2	ENST00000381259.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91 	ENST00000381256.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr1_-_228613026_228613065	0.300093	MSX2	ENST00000366696.1|HIST3H3|ENSG00000168148.3|histone cluster 3, H3
hg19_v2_chr17_+_44679808_44679808	0.299147	MSX2	ENST00000571172.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr5_-_31532238_31532303	0.295391	MSX2	ENST00000507438.1|DROSHA|ENSG00000113360.12|drosha, ribonuclease type III
hg19_v2_chr11_-_71823715_71823792	0.294821	MSX2	ENST00000545944.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000502597.2|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr7_-_99716940_99716943	0.289832	MSX2	ENST00000440225.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr19_+_17378278_17378311	0.284639	MSX2	ENST00000596335.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601436.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000595632.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr10_+_99205894_99205954	0.280833	MSX2	ENST00000370854.3|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000393760.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000414567.1|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16 	ENST00000370846.4|ZDHHC16|ENSG00000171307.14|zinc finger, DHHC-type containing 16
hg19_v2_chr10_-_99205607_99205779	0.27497	MSX2	ENST00000477692.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000485122.2|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370886.5|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370885.4|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370902.3|EXOSC1|ENSG00000171311.8|exosome component 1 	ENST00000370884.5|EXOSC1|ENSG00000171311.8|exosome component 1
hg19_v2_chr19_+_17378159_17378275	0.268424	MSX2	ENST00000598188.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000359435.4|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599474.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000599057.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000601043.1|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1 	ENST00000447614.2|BABAM1|ENSG00000105393.11|BRISC and BRCA1 A complex member 1
hg19_v2_chr11_+_17298342_17298378	0.267061	MSX2	ENST00000530964.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr10_-_15762124_15762149	0.254666	MSX2	ENST00000378076.3|ITGA8|ENSG00000077943.7|integrin, alpha 8
hg19_v2_chr1_-_23694794_23694879	0.254322	MSX2	ENST00000374608.3|ZNF436|ENSG00000125945.10|zinc finger protein 436
hg19_v2_chr3_-_147997869_147997885	0.253265	MSX2	ENST00000460324.1|RP11-501O2.4|ENSG00000243347.1|RP11-501O2.4
hg19_v2_chr10_-_105110831_105110885	0.248046	MSX2	ENST00000337211.4|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr7_-_99716952_99717021	0.238489	MSX2	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr4_+_71587669_71587752	0.231658	MSX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr3_-_141747950_141748004	0.215973	MSX2	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr10_-_105110890_105110914	0.210454	MSX2	ENST00000369847.3|PCGF6|ENSG00000156374.10|polycomb group ring finger 6
hg19_v2_chr17_-_80250663_80250695	0.203159	MSX2	ENST00000581489.1|RP13-516M14.4|ENSG00000265692.1|RP13-516M14.4
hg19_v2_chr7_-_99717463_99717483	0.189787	MSX2	ENST00000437822.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr17_-_46716647_46716665	0.178283	MSX2	ENST00000608940.1|RP11-357H14.17|ENSG00000272763.1|RP11-357H14.17
hg19_v2_chrX_-_69269788_69269788	0.177307	MSX2	ENST00000276101.3|AWAT2|ENSG00000147160.5|acyl-CoA wax alcohol acyltransferase 2
hg19_v2_chr15_+_80351910_80351955	0.175479	MSX2	ENST00000261749.6|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6 	ENST00000561060.1|ZFAND6|ENSG00000086666.14|zinc finger, AN1-type domain 6
hg19_v2_chr19_+_42817527_42817546	0.170968	MSX2	ENST00000598766.1|TMEM145|ENSG00000167619.7|transmembrane protein 145
hg19_v2_chr1_+_198985262_198985295	0.17018	MSX2	ENST00000432488.1|RP11-16L9.4|ENSG00000235492.1|RP11-16L9.4
hg19_v2_chr17_+_67759813_67759832	0.160272	MSX2	ENST00000587241.1|AC003051.1|ENSG00000227517.2|AC003051.1
hg19_v2_chr18_+_39535152_39535232	0.158854	MSX2	ENST00000262039.4|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000398870.3|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3 	ENST00000586545.1|PIK3C3|ENSG00000078142.7|phosphatidylinositol 3-kinase, catalytic subunit type 3
hg19_v2_chr11_+_17298543_17298588	0.158068	MSX2	ENST00000533926.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr5_+_162864575_162864620	0.152924	MSX2	ENST00000512163.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000393929.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000340828.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511683.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510097.1|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000511490.2|CCNG1|ENSG00000113328.14|cyclin G1 	ENST00000510664.1|CCNG1|ENSG00000113328.14|cyclin G1
hg19_v2_chr12_+_9102632_9102708	0.144866	MSX2	ENST00000539240.1|KLRG1|ENSG00000139187.5|killer cell lectin-like receptor subfamily G, member 1
hg19_v2_chr3_+_186353756_186353761	0.140067	MSX2	ENST00000431018.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000450521.1|FETUB|ENSG00000090512.7|fetuin B 	ENST00000539949.1|FETUB|ENSG00000090512.7|fetuin B
hg19_v2_chr19_-_10121144_10121155	0.126352	MSX2	ENST00000264828.3|COL5A3|ENSG00000080573.6|collagen, type V, alpha 3
hg19_v2_chr12_+_52695617_52695649	0.116071	MSX2	ENST00000293525.5|KRT86|ENSG00000170442.7|keratin 86
hg19_v2_chr1_-_151431909_151431987	0.0959761	MSX2	ENST00000361398.3|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000271715.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr11_-_121986923_121986923	0.0938038	MSX2	ENST00000560104.1|BLID|ENSG00000259571.1|BH3-like motif containing, cell death inducer
hg19_v2_chr1_-_151431674_151431691	0.0880888	MSX2	ENST00000531094.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr9_-_5339873_5339881	0.0836244	MSX2	ENST00000223862.1|RLN1|ENSG00000107018.6|relaxin 1 	ENST00000223858.4|RLN1|ENSG00000107018.6|relaxin 1
hg19_v2_chrX_+_113818545_113818566	0.0766668	MSX2	ENST00000371951.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000276198.1|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled 	ENST00000371950.3|HTR2C|ENSG00000147246.5|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled
hg19_v2_chr17_-_38956205_38956214	0.0726102	MSX2	ENST00000306658.7|KRT28|ENSG00000173908.8|keratin 28
hg19_v2_chr1_+_211813019_211813150	0.0681958	MSX2	ENST00000430123.1|RP11-354K1.1|ENSG00000227764.1|RP11-354K1.1
hg19_v2_chr1_-_151431647_151431669	0.0675747	MSX2	ENST00000368863.2|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000409503.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000491586.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000533351.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain 	ENST00000540984.1|POGZ|ENSG00000143442.17|pogo transposable element with ZNF domain
hg19_v2_chr12_-_120315074_120315097	0.0665862	MSX2	ENST00000261833.7|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21) 	ENST00000392521.2|CIT|ENSG00000122966.9|citron (rho-interacting, serine/threonine kinase 21)
hg19_v2_chr11_-_58207646_58207646	0.065258	MSX2	ENST00000302572.2|OR5B12|ENSG00000172362.2|olfactory receptor, family 5, subfamily B, member 12
hg19_v2_chr11_-_71823266_71823325	0.0520314	MSX2	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chr12_+_117099342_117099387	0.038093	MSX2	ENST00000546835.1|RP11-497G19.1|ENSG00000257883.1|RP11-497G19.1
hg19_v2_chr7_-_56174161_56174269	0.0364591	MSX2	ENST00000395422.3|CHCHD2|ENSG00000106153.12|coiled-coil-helix-coiled-coil-helix domain containing 2
hg19_v2_chr11_+_17298522_17298531	0.0342571	MSX2	ENST00000529313.1|NUCB2|ENSG00000070081.11|nucleobindin 2
hg19_v2_chr15_-_98417780_98417780	0.0165033	MSX2	ENST00000503874.3|LINC00923|ENSG00000251209.3|long intergenic non-protein coding RNA 923
hg19_v2_chr3_-_11685345_11685432	0.00675368	MSX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr21_-_32253874_32253899	0.00670335	MSX2	ENST00000332378.4|KRTAP11-1|ENSG00000182591.4|keratin associated protein 11-1
hg19_v2_chr20_+_54967409_54967501	0.00327928	MSX2	ENST00000415828.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000217109.4|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 	ENST00000428552.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
hg19_v2_chr4_-_19458597_19458623	0.00320048	MSX2	ENST00000505347.1|RP11-3J1.1|ENSG00000248238.1|RP11-3J1.1
hg19_v2_chr3_-_112127981_112128034	0.00261695	MSX2	ENST00000486726.2|RP11-231E6.1|ENSG00000243081.2|RP11-231E6.1
hg19_v2_chr20_+_54967663_54967740	0.000627547	MSX2	ENST00000452950.1|CSTF1|ENSG00000101138.7|cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
