hg19_v2_chr3_+_39509070_39509101	10.9045	SOX3_SOX2	ENST00000354668.4|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000428261.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000420739.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000415443.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000447324.1|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000383754.3|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chrX_-_128788914_128788942	8.73609	SOX3_SOX2	ENST00000429967.1|APLN|ENSG00000171388.9|apelin 	ENST00000307484.6|APLN|ENSG00000171388.9|apelin
hg19_v2_chrX_+_103028638_103028650	8.72956	SOX3_SOX2	ENST00000434483.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr3_+_39509163_39509180	8.681	SOX3_SOX2	ENST00000436143.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000441980.2|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein 	ENST00000311042.6|MOBP|ENSG00000168314.13|myelin-associated oligodendrocyte basic protein
hg19_v2_chr6_-_127840336_127840452	8.52954	SOX3_SOX2	ENST00000525778.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr6_-_127840021_127840047	8.50772	SOX3_SOX2	ENST00000465909.2|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr18_-_74728998_74729051	7.71583	SOX3_SOX2	ENST00000359645.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397875.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397869.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578193.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578873.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397866.4|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000528160.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000527041.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000526111.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397865.5|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000382582.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr15_+_80696666_80696700	7.61686	SOX3_SOX2	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr2_-_158182410_158182446	7.37515	SOX3_SOX2	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr9_+_103235365_103235419	7.30924	SOX3_SOX2	ENST00000374879.4|TMEFF1|ENSG00000241697.3|transmembrane protein with EGF-like and two follistatin-like domains 1
hg19_v2_chr11_-_18813353_18813389	7.30085	SOX3_SOX2	ENST00000358540.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396171.4|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) 	ENST00000396167.2|PTPN5|ENSG00000110786.13|protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched)
hg19_v2_chr5_+_94727048_94727074	7.21853	SOX3_SOX2	ENST00000283357.5|FAM81B|ENSG00000153347.5|family with sequence similarity 81, member B
hg19_v2_chr2_-_158182322_158182358	7.17824	SOX3_SOX2	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr6_+_123317116_123317260	7.14365	SOX3_SOX2	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chrX_+_103029314_103029342	7.01286	SOX3_SOX2	ENST00000429977.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr4_-_176733377_176733424	6.69289	SOX3_SOX2	ENST00000505375.1|GPM6A|ENSG00000150625.12|glycoprotein M6A
hg19_v2_chr16_+_89989687_89989774	6.4128	SOX3_SOX2	ENST00000315491.7|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000555576.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000554336.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain  	ENST00000553967.1|TUBB3|ENSG00000258947.2|Tubulin beta-3 chain
hg19_v2_chr19_+_1452188_1452221	6.41241	SOX3_SOX2	ENST00000587149.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr10_-_75351088_75351113	6.10852	SOX3_SOX2	ENST00000451492.1|USP54|ENSG00000166348.13|ubiquitin specific peptidase 54 	ENST00000413442.1|USP54|ENSG00000166348.13|ubiquitin specific peptidase 54
hg19_v2_chr1_-_26233423_26233482	6.01252	SOX3_SOX2	ENST00000357865.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr1_-_26232951_26232959	5.98973	SOX3_SOX2	ENST00000426559.2|STMN1|ENSG00000117632.16|stathmin 1 	ENST00000455785.2|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr13_-_25745857_25745886	5.74903	SOX3_SOX2	ENST00000381853.3|AMER2|ENSG00000165566.11|APC membrane recruitment protein 2
hg19_v2_chr8_+_80523962_80523991	5.6928	SOX3_SOX2	ENST00000518491.1|STMN2|ENSG00000104435.9|stathmin-like 2
hg19_v2_chr4_+_95916947_95917006	5.66749	SOX3_SOX2	ENST00000506363.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr19_-_38720294_38720348	5.63324	SOX3_SOX2	ENST00000412732.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1 	ENST00000456296.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr8_+_61969714_61969724	5.62596	SOX3_SOX2	ENST00000522621.1|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr1_+_203096831_203096864	5.53599	SOX3_SOX2	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chr1_+_50571949_50571964	5.5218	SOX3_SOX2	ENST00000357083.4|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chrX_-_139866723_139866723	5.5104	SOX3_SOX2	ENST00000370532.2|CDR1|ENSG00000184258.5|cerebellar degeneration-related protein 1, 34kDa
hg19_v2_chr4_-_5890145_5890234	5.47452	SOX3_SOX2	ENST00000397890.2|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr20_-_52645231_52645242	5.47099	SOX3_SOX2	ENST00000448484.1|BCAS1|ENSG00000064787.8|breast carcinoma amplified sequence 1
hg19_v2_chr5_+_140593509_140593509	5.43224	SOX3_SOX2	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr10_-_128359074_128359083	5.37318	SOX3_SOX2	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr20_+_42875935_42876136	5.29497	SOX3_SOX2	ENST00000438466.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000372952.3|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000537864.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1 	ENST00000445952.1|GDAP1L1|ENSG00000124194.11|ganglioside induced differentiation associated protein 1-like 1
hg19_v2_chr5_-_16936340_16936418	5.29127	SOX3_SOX2	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chrX_-_24665353_24665382	5.18614	SOX3_SOX2	ENST00000379144.2|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr5_-_146435501_146435537	5.17967	SOX3_SOX2	ENST00000336640.6|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr18_+_21718924_21718963	5.12633	SOX3_SOX2	ENST00000399496.3|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr5_-_114515734_114515944	5.11766	SOX3_SOX2	ENST00000514154.1|TRIM36|ENSG00000152503.5|tripartite motif containing 36 	ENST00000282369.3|TRIM36|ENSG00000152503.5|tripartite motif containing 36
hg19_v2_chr18_-_31802282_31802282	5.11255	SOX3_SOX2	ENST00000535475.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chrX_+_84499081_84499115	5.0887	SOX3_SOX2	ENST00000276123.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr17_+_7608511_7608538	5.0621	SOX3_SOX2	ENST00000226091.2|EFNB3|ENSG00000108947.4|ephrin-B3
hg19_v2_chr19_+_18726786_18726884	4.93888	SOX3_SOX2	ENST00000594709.1|TMEM59L|ENSG00000105696.4|transmembrane protein 59-like
hg19_v2_chr1_+_156589198_156589234	4.83601	SOX3_SOX2	ENST00000456112.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr7_+_107110488_107110515	4.83218	SOX3_SOX2	ENST00000304402.4|GPR22|ENSG00000172209.4|G protein-coupled receptor 22
hg19_v2_chrX_+_84499038_84499078	4.78549	SOX3_SOX2	ENST00000373165.3|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr5_-_146435694_146435705	4.76973	SOX3_SOX2	ENST00000356826.3|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr1_-_26232522_26232644	4.74154	SOX3_SOX2	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr8_-_18871159_18871201	4.73783	SOX3_SOX2	ENST00000327040.8|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3 	ENST00000440756.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr21_+_41239243_41239371	4.73142	SOX3_SOX2	ENST00000328619.5|PCP4|ENSG00000183036.6|Purkinje cell protein 4
hg19_v2_chr15_+_84115868_84115980	4.72944	SOX3_SOX2	ENST00000427482.2|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr1_+_156589051_156589089	4.68192	SOX3_SOX2	ENST00000255039.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr17_-_37764128_37764258	4.6423	SOX3_SOX2	ENST00000302584.4|NEUROD2|ENSG00000171532.4|neuronal differentiation 2
hg19_v2_chr9_+_139874683_139874714	4.58833	SOX3_SOX2	ENST00000444903.1|PTGDS|ENSG00000107317.7|prostaglandin D2 synthase 21kDa (brain)
hg19_v2_chrX_-_24665208_24665275	4.58321	SOX3_SOX2	ENST00000356768.4|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr2_+_210444142_210444194	4.58084	SOX3_SOX2	ENST00000360351.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2 	ENST00000361559.4|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr7_+_20370300_20370359	4.55642	SOX3_SOX2	ENST00000537992.1|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr1_+_151682909_151682909	4.50445	SOX3_SOX2	ENST00000326413.3|RIIAD1|ENSG00000178796.8|regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 	ENST00000442233.2|AL589765.1|ENSG00000240510.2|Uncharacterized protein; cDNA FLJ36032 fis, clone TESTI2017069
hg19_v2_chr1_+_240255166_240255197	4.436	SOX3_SOX2	ENST00000319653.9|FMN2|ENSG00000155816.15|formin 2
hg19_v2_chr2_-_2334888_2335053	4.42545	SOX3_SOX2	ENST00000428368.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like 	ENST00000399161.2|MYT1L|ENSG00000186487.13|myelin transcription factor 1-like
hg19_v2_chrX_+_84498989_84499003	4.38959	SOX3_SOX2	ENST00000395402.1|ZNF711|ENSG00000147180.12|zinc finger protein 711
hg19_v2_chr9_-_73483958_73483985	4.37947	SOX3_SOX2	ENST00000377101.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377106.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000360823.2|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000377105.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr8_-_21988558_21988566	4.3669	SOX3_SOX2	ENST00000312841.8|HR|ENSG00000168453.10|hair growth associated
hg19_v2_chr11_+_60691924_60691966	4.3591	SOX3_SOX2	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr1_+_150229554_150229660	4.3465	SOX3_SOX2	ENST00000369111.4|CA14|ENSG00000118298.6|carbonic anhydrase XIV
hg19_v2_chr7_+_20370746_20370778	4.3056	SOX3_SOX2	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr8_-_22014339_22014345	4.28461	SOX3_SOX2	ENST00000306317.2|LGI3|ENSG00000168481.4|leucine-rich repeat LGI family, member 3
hg19_v2_chr19_-_38720354_38720369	4.27243	SOX3_SOX2	ENST00000416611.1|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chrX_-_13956497_13956536	4.23962	SOX3_SOX2	ENST00000398361.3|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr5_-_146833803_146833829	4.21983	SOX3_SOX2	ENST00000512722.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr15_-_94614049_94614115	4.17752	SOX3_SOX2	ENST00000556447.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1	ENST00000555772.1|CTD-3049M7.1|ENSG00000258754.3|CTD-3049M7.1
hg19_v2_chr15_+_101402041_101402067	4.14521	SOX3_SOX2	ENST00000558475.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000558641.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000559673.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1
hg19_v2_chr5_+_169931249_169931364	4.12922	SOX3_SOX2	ENST00000520740.1|KCNIP1|ENSG00000182132.8|Kv channel interacting protein 1
hg19_v2_chr5_-_146435572_146435590	4.11399	SOX3_SOX2	ENST00000394414.1|PPP2R2B|ENSG00000156475.14|protein phosphatase 2, regulatory subunit B, beta
hg19_v2_chr1_+_228337553_228337602	4.03557	SOX3_SOX2	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chrX_-_138724677_138724887	4.02665	SOX3_SOX2	ENST00000370573.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000338585.6|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence 	ENST00000370576.4|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr7_+_154002527_154002543	4.02583	SOX3_SOX2	ENST00000427557.1|DPP6|ENSG00000130226.12|dipeptidyl-peptidase 6
hg19_v2_chr2_+_27070964_27071027	4.01307	SOX3_SOX2	ENST00000288699.6|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr5_-_146833485_146833522	3.99278	SOX3_SOX2	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr5_+_140480083_140480234	3.98153	SOX3_SOX2	ENST00000231130.2|PCDHB3|ENSG00000113205.2|protocadherin beta 3
hg19_v2_chr19_+_12949251_12949370	3.97502	SOX3_SOX2	ENST00000251472.4|MAST1|ENSG00000105613.5|microtubule associated serine/threonine kinase 1
hg19_v2_chr12_-_50294033_50294044	3.97264	SOX3_SOX2	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr2_+_210517895_210518021	3.96819	SOX3_SOX2	ENST00000447185.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr1_+_159141397_159141549	3.96557	SOX3_SOX2	ENST00000368124.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000368125.4|CADM3|ENSG00000162706.8|cell adhesion molecule 3 	ENST00000416746.1|CADM3|ENSG00000162706.8|cell adhesion molecule 3
hg19_v2_chr1_+_66999268_66999313	3.94289	SOX3_SOX2	ENST00000371039.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1 	ENST00000424320.1|SGIP1|ENSG00000118473.17|SH3-domain GRB2-like (endophilin) interacting protein 1
hg19_v2_chr10_+_18429606_18429670	3.92178	SOX3_SOX2	ENST00000324631.7|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000352115.6|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit 	ENST00000377328.1|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr2_+_162272605_162272753	3.92095	SOX3_SOX2	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr2_+_210444298_210444343	3.91643	SOX3_SOX2	ENST00000445941.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr20_+_20348740_20348765	3.88334	SOX3_SOX2	ENST00000310227.1|INSM1|ENSG00000173404.3|insulinoma-associated 1
hg19_v2_chr8_+_105235572_105235610	3.84324	SOX3_SOX2	ENST00000523362.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr2_-_26205550_26205624	3.82377	SOX3_SOX2	ENST00000405914.1|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr17_-_56605341_56605363	3.81322	SOX3_SOX2	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr2_-_99485825_99485855	3.80524	SOX3_SOX2	ENST00000423771.1|KIAA1211L|ENSG00000196872.6|KIAA1211-like
hg19_v2_chr2_+_17721920_17721933	3.80398	SOX3_SOX2	ENST00000295156.4|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr2_+_27071045_27071157	3.80189	SOX3_SOX2	ENST00000401478.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr6_-_127840453_127840507	3.7974	SOX3_SOX2	ENST00000556132.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr9_-_91793675_91793698	3.79691	SOX3_SOX2	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr14_+_101293687_101293748	3.76438	SOX3_SOX2	ENST00000455286.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr8_+_85095013_85095031	3.72947	SOX3_SOX2	ENST00000522613.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr2_-_158182105_158182171	3.72199	SOX3_SOX2	ENST00000409925.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr19_-_821931_821981	3.72172	SOX3_SOX2	ENST00000359894.2|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000520876.3|LPPR3|ENSG00000129951.14|hsa-mir-3187 	ENST00000519502.1|LPPR3|ENSG00000129951.14|hsa-mir-3187
hg19_v2_chr3_+_178253993_178254025	3.71327	SOX3_SOX2	ENST00000420517.2|KCNMB2|ENSG00000197584.7|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENST00000452583.1|KCNMB2|ENSG00000197584.7|potassium large conductance calcium-activated channel, subfamily M, beta member 2
hg19_v2_chr14_-_70038032_70038032	3.69705	SOX3_SOX2	ENST00000543986.1|CCDC177|ENSG00000255994.1|coiled-coil domain containing 177
hg19_v2_chr2_+_210443993_210444094	3.67639	SOX3_SOX2	ENST00000392193.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chrX_+_69642881_69642991	3.6607	SOX3_SOX2	ENST00000453994.2|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000536730.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000538649.1|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2 	ENST00000374382.3|GDPD2|ENSG00000130055.9|glycerophosphodiester phosphodiesterase domain containing 2
hg19_v2_chr5_+_140235469_140235634	3.65317	SOX3_SOX2	ENST00000506939.2|PCDHA10|ENSG00000250120.2|protocadherin alpha 10 	ENST00000307360.5|PCDHA10|ENSG00000250120.2|protocadherin alpha 10
hg19_v2_chr18_-_24445729_24445782	3.65078	SOX3_SOX2	ENST00000383168.4|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr19_-_51472823_51472929	3.64647	SOX3_SOX2	ENST00000310157.2|KLK6|ENSG00000167755.9|kallikrein-related peptidase 6
hg19_v2_chr14_-_60097297_60097403	3.62486	SOX3_SOX2	ENST00000395090.1|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr2_+_17721937_17721990	3.61514	SOX3_SOX2	ENST00000451533.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr16_-_11375179_11375207	3.60947	SOX3_SOX2	ENST00000312511.3|PRM1|ENSG00000175646.3|protamine 1
hg19_v2_chr2_+_27071292_27071376	3.60569	SOX3_SOX2	ENST00000431402.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5 	ENST00000434719.1|DPYSL5|ENSG00000157851.12|dihydropyrimidinase-like 5
hg19_v2_chr1_+_212797789_212797818	3.59994	SOX3_SOX2	ENST00000294829.3|FAM71A|ENSG00000162771.6|family with sequence similarity 71, member A
hg19_v2_chr3_-_116164306_116164380	3.57426	SOX3_SOX2	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr11_+_1411503_1411521	3.55211	SOX3_SOX2	ENST00000526678.1|BRSK2|ENSG00000174672.11|BR serine/threonine kinase 2
hg19_v2_chr20_+_58203664_58203713	3.54062	SOX3_SOX2	ENST00000541461.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr14_-_58618896_58618939	3.53828	SOX3_SOX2	ENST00000267485.7|C14orf37|ENSG00000139971.11|chromosome 14 open reading frame 37
hg19_v2_chr16_+_30934376_30934392	3.52242	SOX3_SOX2	ENST00000562798.1|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19 	ENST00000471231.2|FBXL19|ENSG00000099364.12|F-box and leucine-rich repeat protein 19
hg19_v2_chr22_-_39052300_39052336	3.51517	SOX3_SOX2	ENST00000355830.6|FAM227A|ENSG00000184949.11|family with sequence similarity 227, member A
hg19_v2_chrX_-_132095419_132095426	3.51266	SOX3_SOX2	ENST00000370836.2|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2 	ENST00000521489.1|HS6ST2|ENSG00000171004.13|heparan sulfate 6-O-sulfotransferase 2
hg19_v2_chr1_-_173638976_173639007	3.50271	SOX3_SOX2	ENST00000333279.2|ANKRD45|ENSG00000183831.6|ankyrin repeat domain 45
hg19_v2_chr11_-_133715394_133715433	3.49075	SOX3_SOX2	ENST00000299140.3|SPATA19|ENSG00000166118.3|spermatogenesis associated 19 	ENST00000532889.1|SPATA19|ENSG00000166118.3|spermatogenesis associated 19
hg19_v2_chr7_+_70597109_70597155	3.46732	SOX3_SOX2	ENST00000333538.5|WBSCR17|ENSG00000185274.7|Williams-Beuren syndrome chromosome region 17
hg19_v2_chr3_+_181429704_181429722	3.42812	SOX3_SOX2	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr16_+_58497567_58497586	3.40555	SOX3_SOX2	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr2_-_175869936_175869954	3.39469	SOX3_SOX2	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr17_+_36584662_36584730	3.32979	SOX3_SOX2	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr18_+_21719018_21719061	3.31873	SOX3_SOX2	ENST00000585037.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000415309.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000399481.2|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000577705.1|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated 	ENST00000327201.6|CABYR|ENSG00000154040.16|calcium binding tyrosine-(Y)-phosphorylation regulated
hg19_v2_chr4_-_87281196_87281219	3.30214	SOX3_SOX2	ENST00000359221.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr17_-_9940058_9940074	3.29785	SOX3_SOX2	ENST00000585266.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chrX_+_86772707_86772752	3.23517	SOX3_SOX2	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr17_+_68101117_68101162	3.23416	SOX3_SOX2	ENST00000587698.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000587892.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr10_+_121578211_121578248	3.22943	SOX3_SOX2	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chrX_+_92929192_92929214	3.22702	SOX3_SOX2	ENST00000332647.4|FAM133A|ENSG00000179083.5|family with sequence similarity 133, member A
hg19_v2_chr8_-_20161466_20161481	3.22235	SOX3_SOX2	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr11_+_7273181_7273223	3.20009	SOX3_SOX2	ENST00000318881.6|SYT9|ENSG00000170743.12|synaptotagmin IX
hg19_v2_chrX_+_100333709_100333876	3.19915	SOX3_SOX2	ENST00000372930.4|TMEM35|ENSG00000126950.7|transmembrane protein 35
hg19_v2_chr2_+_17721230_17721255	3.19818	SOX3_SOX2	ENST00000457525.1|VSNL1|ENSG00000163032.7|visinin-like 1
hg19_v2_chr6_+_72596604_72596727	3.17802	SOX3_SOX2	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chrX_-_138287168_138287192	3.17646	SOX3_SOX2	ENST00000436198.1|FGF13|ENSG00000129682.9|fibroblast growth factor 13
hg19_v2_chr5_-_176900610_176900742	3.14376	SOX3_SOX2	ENST00000477391.2|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000393565.1|DBN1|ENSG00000113758.9|drebrin 1 	ENST00000309007.5|DBN1|ENSG00000113758.9|drebrin 1
hg19_v2_chr2_+_155555201_155555272	3.14263	SOX3_SOX2	ENST00000544049.1|KCNJ3|ENSG00000162989.3|potassium inwardly-rectifying channel, subfamily J, member 3
hg19_v2_chr10_-_128359008_128359022	3.10693	SOX3_SOX2	ENST00000488181.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chrX_-_43832711_43832750	3.10146	SOX3_SOX2	ENST00000378062.5|NDP|ENSG00000124479.8|Norrie disease (pseudoglioma)
hg19_v2_chr18_-_24445664_24445679	3.08885	SOX3_SOX2	ENST00000578776.1|AQP4|ENSG00000171885.9|aquaporin 4
hg19_v2_chr14_-_60097524_60097538	3.07718	SOX3_SOX2	ENST00000342503.4|RTN1|ENSG00000139970.12|reticulon 1
hg19_v2_chr16_+_6069586_6069602	3.0748	SOX3_SOX2	ENST00000547372.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr1_-_177133818_177133872	3.06966	SOX3_SOX2	ENST00000424564.2|ASTN1|ENSG00000152092.11|astrotactin 1 	ENST00000361833.2|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr2_-_26205340_26205381	3.06869	SOX3_SOX2	ENST00000264712.3|KIF3C|ENSG00000084731.9|kinesin family member 3C
hg19_v2_chr7_-_22233442_22233527	3.06454	SOX3_SOX2	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr13_+_30002741_30002776	3.06383	SOX3_SOX2	ENST00000380808.2|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr4_-_87281224_87281375	3.03934	SOX3_SOX2	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr5_+_140474181_140474227	3.03112	SOX3_SOX2	ENST00000194155.4|PCDHB2|ENSG00000112852.4|protocadherin beta 2
hg19_v2_chr15_-_80695917_80695917	3.02628	SOX3_SOX2	ENST00000559008.1|RP11-210M15.2|ENSG00000259495.1|Uncharacterized protein
hg19_v2_chr10_-_61122220_61122358	3.02597	SOX3_SOX2	ENST00000422313.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000435852.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000442566.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373868.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000277705.6|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000373867.3|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C 	ENST00000419214.2|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chrX_+_86772787_86772817	3.022	SOX3_SOX2	ENST00000373114.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr17_-_9939935_9939990	3.0126	SOX3_SOX2	ENST00000580043.1|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr1_-_75100539_75100563	3.00774	SOX3_SOX2	ENST00000420661.2|C1orf173|ENSG00000178965.9|chromosome 1 open reading frame 173
hg19_v2_chr18_+_55018044_55018044	3.00519	SOX3_SOX2	ENST00000324000.3|ST8SIA3|ENSG00000177511.5|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
hg19_v2_chr19_-_6501778_6501804	2.95542	SOX3_SOX2	ENST00000596291.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa
hg19_v2_chr5_-_176037105_176037165	2.95358	SOX3_SOX2	ENST00000303991.4|GPRIN1|ENSG00000169258.6|G protein regulated inducer of neurite outgrowth 1
hg19_v2_chr1_+_92632542_92632609	2.95185	SOX3_SOX2	ENST00000409154.4|KIAA1107|ENSG00000069712.9|KIAA1107 	ENST00000370378.4|KIAA1107|ENSG00000069712.9|KIAA1107
hg19_v2_chrX_+_9880412_9880550	2.94834	SOX3_SOX2	ENST00000418909.2|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr2_+_69240302_69240332	2.93999	SOX3_SOX2	ENST00000303714.4|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr19_-_42498369_42498390	2.92751	SOX3_SOX2	ENST00000302102.5|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENST00000545399.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr3_-_116163830_116163855	2.92741	SOX3_SOX2	ENST00000333617.4|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr16_+_58497587_58497668	2.91915	SOX3_SOX2	ENST00000569404.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000569539.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000564126.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000565304.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000567667.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr19_-_42498231_42498356	2.90339	SOX3_SOX2	ENST00000602133.1|ATP1A3|ENSG00000105409.11|ATPase, Na+/K+ transporting, alpha 3 polypeptide
hg19_v2_chr2_+_69240511_69240532	2.88738	SOX3_SOX2	ENST00000409349.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr8_+_30496078_30496130	2.88491	SOX3_SOX2	ENST00000517349.1|SMIM18|ENSG00000253457.1|small integral membrane protein 18
hg19_v2_chr6_+_69942915_69942931	2.86668	SOX3_SOX2	ENST00000604969.1|BAI3|ENSG00000135298.9|brain-specific angiogenesis inhibitor 3 	ENST00000603207.1|BAI3|ENSG00000135298.9|brain-specific angiogenesis inhibitor 3
hg19_v2_chr8_+_79578282_79578334	2.86568	SOX3_SOX2	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chrX_-_80457385_80457441	2.86367	SOX3_SOX2	ENST00000451455.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000436386.1|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5 	ENST00000358130.2|HMGN5|ENSG00000198157.6|high mobility group nucleosome binding domain 5
hg19_v2_chrX_-_24690771_24690794	2.85859	SOX3_SOX2	ENST00000379145.1|PCYT1B|ENSG00000102230.9|phosphate cytidylyltransferase 1, choline, beta
hg19_v2_chr17_+_40119801_40119821	2.83993	SOX3_SOX2	ENST00000585452.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr20_-_30458019_30458083	2.82754	SOX3_SOX2	ENST00000486996.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15 	ENST00000398084.2|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr6_-_134639235_134639255	2.82004	SOX3_SOX2	ENST00000533224.1|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr16_+_6069072_6069132	2.81463	SOX3_SOX2	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr22_+_19701985_19702063	2.79976	SOX3_SOX2	ENST00000455784.2|SEPT5|ENSG00000184702.13|septin 5 	ENST00000406395.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr6_+_97372596_97372644	2.7903	SOX3_SOX2	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr1_-_31712401_31712401	2.78894	SOX3_SOX2	ENST00000373736.2|NKAIN1|ENSG00000084628.5|Na+/K+ transporting ATPase interacting 1
hg19_v2_chr1_+_50569575_50569586	2.77675	SOX3_SOX2	ENST00000371827.1|ELAVL4|ENSG00000162374.12|ELAV like neuron-specific RNA binding protein 4
hg19_v2_chr10_-_104179682_104179717	2.77235	SOX3_SOX2	ENST00000406432.1|PSD|ENSG00000059915.12|pleckstrin and Sec7 domain containing
hg19_v2_chr9_+_95947198_95947225	2.76679	SOX3_SOX2	ENST00000448039.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000297954.4|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395477.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000395475.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000349097.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000427277.2|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000356055.3|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2 	ENST00000432730.1|WNK2|ENSG00000165238.12|WNK lysine deficient protein kinase 2
hg19_v2_chr7_-_112727774_112727833	2.76674	SOX3_SOX2	ENST00000297146.3|GPR85|ENSG00000164604.8|G protein-coupled receptor 85 	ENST00000501255.2|GPR85|ENSG00000164604.8|G protein-coupled receptor 85
hg19_v2_chr3_-_149688971_149689010	2.76591	SOX3_SOX2	ENST00000498307.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000489155.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr7_-_107968921_107968937	2.7517	SOX3_SOX2	ENST00000442580.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr7_+_94537542_94537591	2.73744	SOX3_SOX2	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr2_-_152955537_152955593	2.73058	SOX3_SOX2	ENST00000201943.5|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit 	ENST00000539935.1|CACNB4|ENSG00000182389.14|calcium channel, voltage-dependent, beta 4 subunit
hg19_v2_chr7_-_19813192_19813256	2.72671	SOX3_SOX2	ENST00000422233.1|TMEM196|ENSG00000173452.9|transmembrane protein 196 	ENST00000433641.1|TMEM196|ENSG00000173452.9|transmembrane protein 196
hg19_v2_chr22_+_19702069_19702198	2.72645	SOX3_SOX2	ENST00000412544.1|SEPT5|ENSG00000184702.13|septin 5
hg19_v2_chr13_+_113656092_113656207	2.72291	SOX3_SOX2	ENST00000397024.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr12_-_81763184_81763202	2.71139	SOX3_SOX2	ENST00000548670.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000541570.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000553058.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr13_-_25754077_25754217	2.70386	SOX3_SOX2	ENST00000413501.1|AMER2-AS1|ENSG00000234056.1|AMER2 antisense RNA 1 (head to head)
hg19_v2_chr11_+_66045634_66045710	2.70297	SOX3_SOX2	ENST00000528852.1|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2 	ENST00000311445.6|CNIH2|ENSG00000174871.6|cornichon family AMPA receptor auxiliary protein 2
hg19_v2_chr10_+_73724123_73724206	2.70116	SOX3_SOX2	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr4_+_150999418_150999433	2.69584	SOX3_SOX2	ENST00000296550.7|DCLK2|ENSG00000170390.10|doublecortin-like kinase 2
hg19_v2_chr1_+_200708671_200708744	2.69218	SOX3_SOX2	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr16_-_75529273_75529293	2.68268	SOX3_SOX2	ENST00000390664.2|CHST6|ENSG00000183196.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
hg19_v2_chr15_+_84116106_84116283	2.68178	SOX3_SOX2	ENST00000535412.1|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3 	ENST00000324537.5|SH3GL3|ENSG00000140600.12|SH3-domain GRB2-like 3
hg19_v2_chr4_-_40859132_40859209	2.67862	SOX3_SOX2	ENST00000543538.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000502841.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000504305.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000513516.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENST00000510670.1|APBB2|ENSG00000163697.12|amyloid beta (A4) precursor protein-binding, family B, member 2
hg19_v2_chr9_+_139221880_139221932	2.67632	SOX3_SOX2	ENST00000392945.3|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1 	ENST00000440944.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr2_+_14772810_14772853	2.66924	SOX3_SOX2	ENST00000295092.2|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A 	ENST00000331243.4|FAM84A|ENSG00000162981.12|family with sequence similarity 84, member A
hg19_v2_chr6_-_127840048_127840074	2.65438	SOX3_SOX2	ENST00000467753.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr4_+_48485341_48485394	2.65281	SOX3_SOX2	ENST00000273861.4|SLC10A4|ENSG00000145248.6|solute carrier family 10, member 4
hg19_v2_chr10_-_118429461_118429484	2.64656	SOX3_SOX2	ENST00000588184.1|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82 	ENST00000369210.3|C10orf82|ENSG00000165863.12|chromosome 10 open reading frame 82
hg19_v2_chrX_+_103031758_103031779	2.64067	SOX3_SOX2	ENST00000303958.2|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000361621.2|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr19_+_3880581_3880692	2.63243	SOX3_SOX2	ENST00000450849.2|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000301260.6|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type 	ENST00000398448.3|ATCAY|ENSG00000167654.13|ataxia, cerebellar, Cayman type
hg19_v2_chr1_+_1361494_1361508	2.63239	SOX3_SOX2	ENST00000378821.3|TMEM88B|ENSG00000205116.3|transmembrane protein 88B
hg19_v2_chr5_-_83680192_83680209	2.61155	SOX3_SOX2	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr15_-_82338460_82338496	2.60642	SOX3_SOX2	ENST00000558133.1|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B 	ENST00000329713.4|MEX3B|ENSG00000183496.5|mex-3 RNA binding family member B
hg19_v2_chr3_-_52002194_52002250	2.60573	SOX3_SOX2	ENST00000466412.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr13_+_30002846_30002862	2.60403	SOX3_SOX2	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chrX_+_103031421_103031546	2.59621	SOX3_SOX2	ENST00000433491.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000418604.1|PLP1|ENSG00000123560.9|proteolipid protein 1 	ENST00000443502.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr7_-_71868354_71868431	2.59517	SOX3_SOX2	ENST00000412588.1|CALN1|ENSG00000183166.6|calneuron 1
hg19_v2_chr11_-_125550726_125550747	2.58636	SOX3_SOX2	ENST00000315608.3|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1 	ENST00000530048.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chr5_+_140749803_140749831	2.57344	SOX3_SOX2	ENST00000576222.1|PCDHGB3|ENSG00000262209.1|protocadherin gamma subfamily B, 3
hg19_v2_chr15_+_22382382_22382382	2.5646	SOX3_SOX2	ENST00000328795.4|OR4N4|ENSG00000183706.4|olfactory receptor, family 4, subfamily N, member 4
hg19_v2_chr9_+_140032842_140032842	2.56237	SOX3_SOX2	ENST00000371561.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1 	ENST00000315048.3|GRIN1|ENSG00000176884.10|glutamate receptor, ionotropic, N-methyl D-aspartate 1
hg19_v2_chr3_+_132757215_132757261	2.55437	SOX3_SOX2	ENST00000321871.6|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000393130.3|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000514894.1|TMEM108|ENSG00000144868.9|transmembrane protein 108 	ENST00000512662.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr4_-_186732048_186732225	2.55151	SOX3_SOX2	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr5_-_110062349_110062380	2.54751	SOX3_SOX2	ENST00000511883.2|TMEM232|ENSG00000186952.10|transmembrane protein 232 	ENST00000455884.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr11_-_57417405_57417423	2.54373	SOX3_SOX2	ENST00000524669.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila) 	ENST00000300022.3|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chr7_-_99869799_99869855	2.53644	SOX3_SOX2	ENST00000436886.2|GATS|ENSG00000160844.6|GATS, stromal antigen 3 opposite strand
hg19_v2_chr1_-_32801825_32801980	2.53381	SOX3_SOX2	ENST00000329421.7|MARCKSL1|ENSG00000175130.6|MARCKS-like 1
hg19_v2_chr12_-_99288986_99289078	2.52955	SOX3_SOX2	ENST00000552407.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000551613.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000548447.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546364.3|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000552748.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr10_+_60759378_60759409	2.52755	SOX3_SOX2	ENST00000432535.1|LINC00844|ENSG00000237949.1|long intergenic non-protein coding RNA 844
hg19_v2_chr1_-_177134024_177134052	2.52672	SOX3_SOX2	ENST00000367654.3|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr14_-_105071083_105071155	2.51967	SOX3_SOX2	ENST00000415614.2|TMEM179|ENSG00000258986.2|transmembrane protein 179
hg19_v2_chr2_-_9143786_9143942	2.51246	SOX3_SOX2	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr7_-_107968999_107969099	2.5082	SOX3_SOX2	ENST00000456431.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr9_-_23779367_23779378	2.50656	SOX3_SOX2	ENST00000440102.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr5_+_55033845_55033870	2.50368	SOX3_SOX2	ENST00000353507.5|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514278.2|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000505374.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506511.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr3_-_139258521_139258671	2.47863	SOX3_SOX2	ENST00000483943.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000232219.2|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular 	ENST00000492918.1|RBP1|ENSG00000114115.5|retinol binding protein 1, cellular
hg19_v2_chr17_+_68100989_68101026	2.47828	SOX3_SOX2	ENST00000585558.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392670.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr1_-_156217829_156217867	2.47522	SOX3_SOX2	ENST00000356983.2|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000335852.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000340183.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI 	ENST00000540423.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chrX_+_9880590_9880723	2.47184	SOX3_SOX2	ENST00000452575.1|SHROOM2|ENSG00000146950.8|shroom family member 2
hg19_v2_chr11_-_94965667_94965705	2.4678	SOX3_SOX2	ENST00000542176.1|SESN3|ENSG00000149212.6|sestrin 3 	ENST00000278499.2|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr14_+_32798547_32798606	2.46343	SOX3_SOX2	ENST00000557354.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557102.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6 	ENST00000557272.1|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr19_-_6502341_6502352	2.45887	SOX3_SOX2	ENST00000598006.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000601152.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa
hg19_v2_chr6_+_13925098_13925163	2.45817	SOX3_SOX2	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chrX_+_70443050_70443061	2.45148	SOX3_SOX2	ENST00000361726.6|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr3_-_19988462_19988501	2.45076	SOX3_SOX2	ENST00000344838.4|EFHB|ENSG00000163576.13|EF-hand domain family, member B
hg19_v2_chr1_-_205419053_205419068	2.44794	SOX3_SOX2	ENST00000367154.1|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chr15_-_44487408_44487476	2.44726	SOX3_SOX2	ENST00000402883.1|FRMD5|ENSG00000171877.15|FERM domain containing 5 	ENST00000417257.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr2_+_228736321_228736332	2.44266	SOX3_SOX2	ENST00000309931.2|DAW1|ENSG00000123977.5|dynein assembly factor with WDR repeat domains 1
hg19_v2_chr8_+_91803695_91803778	2.43977	SOX3_SOX2	ENST00000417640.2|NECAB1|ENSG00000123119.7|N-terminal EF-hand calcium binding protein 1
hg19_v2_chr7_-_99774945_99775026	2.42697	SOX3_SOX2	ENST00000292377.2|GPC2|ENSG00000213420.3|glypican 2
hg19_v2_chr17_+_27920486_27920525	2.42005	SOX3_SOX2	ENST00000394859.3|ANKRD13B|ENSG00000198720.8|ankyrin repeat domain 13B
hg19_v2_chr1_+_87012753_87012767	2.41489	SOX3_SOX2	ENST00000370563.3|CLCA4|ENSG00000016602.8|chloride channel accessory 4
hg19_v2_chr9_-_117420052_117420092	2.39846	SOX3_SOX2	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr4_-_139163491_139163510	2.39644	SOX3_SOX2	ENST00000280612.5|SLC7A11|ENSG00000151012.9|solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11
hg19_v2_chr3_+_127348005_127348063	2.38966	SOX3_SOX2	ENST00000342480.6|PODXL2|ENSG00000114631.10|podocalyxin-like 2
hg19_v2_chr17_+_51900239_51900312	2.37265	SOX3_SOX2	ENST00000268919.4|KIF2B|ENSG00000141200.6|kinesin family member 2B
hg19_v2_chr20_-_21378666_21378666	2.3699	SOX3_SOX2	ENST00000351817.4|NKX2-4|ENSG00000125816.4|NK2 homeobox 4
hg19_v2_chr7_+_154002189_154002198	2.3632	SOX3_SOX2	ENST00000332007.3|DPP6|ENSG00000130226.12|dipeptidyl-peptidase 6
hg19_v2_chr1_-_156217822_156217823	2.3433	SOX3_SOX2	ENST00000368270.1|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr10_-_49482907_49482941	2.33607	SOX3_SOX2	ENST00000374201.3|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2 	ENST00000407470.4|FRMPD2|ENSG00000170324.15|FERM and PDZ domain containing 2
hg19_v2_chr5_+_173930676_173930692	2.33312	SOX3_SOX2	ENST00000504512.1|RP11-267A15.1|ENSG00000249306.1|RP11-267A15.1
hg19_v2_chr5_+_86563636_86563712	2.33298	SOX3_SOX2	ENST00000274376.6|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr9_+_91003271_91003386	2.32968	SOX3_SOX2	ENST00000375859.3|SPIN1|ENSG00000106723.12|spindlin 1 	ENST00000541629.1|SPIN1|ENSG00000106723.12|spindlin 1
hg19_v2_chr18_+_72201664_72201703	2.32094	SOX3_SOX2	ENST00000358821.3|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chr10_-_128975273_128975273	2.31599	SOX3_SOX2	ENST00000424811.2|FAM196A|ENSG00000188916.4|family with sequence similarity 196, member A
hg19_v2_chr5_-_83680603_83680617	2.31462	SOX3_SOX2	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr12_+_70760056_70760085	2.30855	SOX3_SOX2	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr12_-_45270077_45270143	2.30644	SOX3_SOX2	ENST00000551601.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000549027.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000452445.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr19_+_3224700_3224759	2.2848	SOX3_SOX2	ENST00000292672.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5 	ENST00000541430.2|CELF5|ENSG00000161082.8|CUGBP, Elav-like family member 5
hg19_v2_chr5_-_160973649_160973713	2.28421	SOX3_SOX2	ENST00000393959.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2 	ENST00000517547.1|GABRB2|ENSG00000145864.8|gamma-aminobutyric acid (GABA) A receptor, beta 2
hg19_v2_chr4_+_128702969_128702984	2.27445	SOX3_SOX2	ENST00000508776.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000439123.2|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr12_-_45307711_45307922	2.26545	SOX3_SOX2	ENST00000333837.4|NELL2|ENSG00000184613.6|NEL-like 2 (chicken) 	ENST00000551949.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr12_-_105478339_105478361	2.26138	SOX3_SOX2	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr6_+_30848557_30848645	2.25799	SOX3_SOX2	ENST00000460944.2|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1 	ENST00000324771.8|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr1_-_156399184_156399225	2.25525	SOX3_SOX2	ENST00000368243.1|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000357975.4|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000310027.5|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61 	ENST00000400991.2|C1orf61|ENSG00000125462.12|chromosome 1 open reading frame 61
hg19_v2_chr15_-_65360450_65360574	2.25044	SOX3_SOX2	ENST00000220062.4|RASL12|ENSG00000103710.6|RAS-like, family 12
hg19_v2_chr12_-_82152420_82152441	2.24342	SOX3_SOX2	ENST00000552948.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000548586.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr5_+_148960931_148961073	2.24216	SOX3_SOX2	ENST00000333677.6|ARHGEF37|ENSG00000183111.7|Rho guanine nucleotide exchange factor (GEF) 37
hg19_v2_chr13_-_108518986_108519083	2.22253	SOX3_SOX2	ENST00000375915.2|FAM155A|ENSG00000204442.2|family with sequence similarity 155, member A
hg19_v2_chr15_-_74043816_74043816	2.21756	SOX3_SOX2	ENST00000379822.4|C15orf59|ENSG00000205363.4|chromosome 15 open reading frame 59
hg19_v2_chr1_+_201857798_201857836	2.20648	SOX3_SOX2	ENST00000362011.6|SHISA4|ENSG00000198892.6|shisa family member 4
hg19_v2_chr5_+_175288631_175288690	2.2059	SOX3_SOX2	ENST00000509837.1|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chrX_+_101470280_101470280	2.20455	SOX3_SOX2	ENST00000395088.2|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000330252.5|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000333110.5|TCP11X1|ENSG00000215046.4|t-complex 11 family, X-linked 1
hg19_v2_chr7_+_73703728_73703807	2.19253	SOX3_SOX2	ENST00000361545.5|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2 	ENST00000223398.6|CLIP2|ENSG00000106665.11|CAP-GLY domain containing linker protein 2
hg19_v2_chr12_+_106976678_106976708	2.18805	SOX3_SOX2	ENST00000392842.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr5_+_140625147_140625147	2.18365	SOX3_SOX2	ENST00000231173.3|PCDHB15|ENSG00000113248.3|protocadherin beta 15
hg19_v2_chr12_-_45270151_45270162	2.18055	SOX3_SOX2	ENST00000429094.2|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chrX_-_101726732_101726732	2.1635	SOX3_SOX2	ENST00000457521.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000412230.2|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000453326.2|TCP11X2|ENSG00000215029.4|t-complex 11 family, X-linked 2
hg19_v2_chr19_-_55691472_55691551	2.15638	SOX3_SOX2	ENST00000537500.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr6_-_3227877_3227969	2.14066	SOX3_SOX2	ENST00000259818.7|TUBB2B|ENSG00000137285.9|tubulin, beta 2B class IIb
hg19_v2_chr2_+_220492116_220492137	2.13785	SOX3_SOX2	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr18_-_31802056_31802056	2.13391	SOX3_SOX2	ENST00000538587.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr12_-_64784471_64784503	2.12296	SOX3_SOX2	ENST00000333722.5|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr1_-_184006829_184006911	2.11587	SOX3_SOX2	ENST00000361927.4|COLGALT2|ENSG00000198756.6|collagen beta(1-O)galactosyltransferase 2
hg19_v2_chr5_+_140213815_140213969	2.11133	SOX3_SOX2	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr3_-_79068138_79068214	2.10298	SOX3_SOX2	ENST00000495273.1|ROBO1|ENSG00000169855.15|roundabout, axon guidance receptor, homolog 1 (Drosophila)
hg19_v2_chr1_-_6546001_6546019	2.10012	SOX3_SOX2	ENST00000400913.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr1_-_156217875_156217885	2.09991	SOX3_SOX2	ENST00000292291.5|PAQR6|ENSG00000160781.11|progestin and adipoQ receptor family member VI
hg19_v2_chr12_+_8849773_8849912	2.09362	SOX3_SOX2	ENST00000541044.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B
hg19_v2_chr4_+_154074217_154074270	2.09329	SOX3_SOX2	ENST00000437508.2|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr7_+_23146271_23146285	2.07986	SOX3_SOX2	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr6_+_21666633_21666681	2.07329	SOX3_SOX2	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr3_-_58563094_58563126	2.0716	SOX3_SOX2	ENST00000464064.1|FAM107A|ENSG00000168309.12|family with sequence similarity 107, member A
hg19_v2_chr8_-_144241664_144241748	2.06964	SOX3_SOX2	ENST00000342752.4|LY6H|ENSG00000176956.8|lymphocyte antigen 6 complex, locus H
hg19_v2_chr4_+_154125565_154125626	2.06838	SOX3_SOX2	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr17_+_31255165_31255228	2.06136	SOX3_SOX2	ENST00000578289.1|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000439138.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr7_+_95401851_95401876	2.06057	SOX3_SOX2	ENST00000447467.2|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chr12_-_99548270_99548295	2.05918	SOX3_SOX2	ENST00000546568.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000332712.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000546960.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chrX_-_75005054_75005094	2.05514	SOX3_SOX2	ENST00000373359.2|MAGEE2|ENSG00000186675.5|melanoma antigen family E, 2
hg19_v2_chr17_+_72983674_72983768	2.05497	SOX3_SOX2	ENST00000337231.5|CDR2L|ENSG00000109089.7|cerebellar degeneration-related protein 2-like
hg19_v2_chr8_+_144295067_144295131	2.05344	SOX3_SOX2	ENST00000330824.2|GPIHBP1|ENSG00000182851.2|glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
hg19_v2_chr11_-_125365435_125365561	2.04785	SOX3_SOX2	ENST00000524435.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr6_+_123100620_123100763	2.0411	SOX3_SOX2	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr15_-_93632421_93632446	2.0394	SOX3_SOX2	ENST00000329082.7|RGMA|ENSG00000182175.9|repulsive guidance molecule family member a
hg19_v2_chr2_-_224903995_224904036	2.03683	SOX3_SOX2	ENST00000409304.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000454956.1|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 	ENST00000258405.4|SERPINE2|ENSG00000135919.8|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
hg19_v2_chr5_+_140797296_140797427	2.03207	SOX3_SOX2	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr1_+_197886461_197886558	2.00161	SOX3_SOX2	ENST00000367388.3|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000337020.2|LHX9|ENSG00000143355.11|LIM homeobox 9 	ENST00000367387.4|LHX9|ENSG00000143355.11|LIM homeobox 9
hg19_v2_chr3_+_164924716_164924750	1.99854	SOX3_SOX2	ENST00000470138.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2	ENST00000498616.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chr7_-_32110451_32110523	1.99478	SOX3_SOX2	ENST00000396191.1|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa 	ENST00000396182.2|PDE1C|ENSG00000154678.12|phosphodiesterase 1C, calmodulin-dependent 70kDa
hg19_v2_chr8_+_26435359_26435426	1.99356	SOX3_SOX2	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr9_-_23825956_23826063	1.99043	SOX3_SOX2	ENST00000397312.2|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr15_+_52043758_52043809	1.98485	SOX3_SOX2	ENST00000249700.4|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal) 	ENST00000539962.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr16_+_58498194_58498236	1.98366	SOX3_SOX2	ENST00000561779.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000565430.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000567063.1|NDRG4|ENSG00000103034.10|NDRG family member 4 	ENST00000566041.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr18_+_31185530_31185578	1.98021	SOX3_SOX2	ENST00000586327.1|ASXL3|ENSG00000141431.5|additional sex combs like 3 (Drosophila)
hg19_v2_chr4_+_41258786_41258962	1.98017	SOX3_SOX2	ENST00000503431.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000284440.4|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000508768.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 	ENST00000512788.1|UCHL1|ENSG00000154277.8|ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)
hg19_v2_chr12_+_48722763_48722763	1.97903	SOX3_SOX2	ENST00000335017.1|H1FNT|ENSG00000187166.1|H1 histone family, member N, testis-specific
hg19_v2_chr14_+_32798462_32798539	1.97786	SOX3_SOX2	ENST00000280979.4|AKAP6|ENSG00000151320.6|A kinase (PRKA) anchor protein 6
hg19_v2_chr1_+_169075554_169075571	1.97212	SOX3_SOX2	ENST00000367815.4|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr5_-_45696253_45696427	1.97085	SOX3_SOX2	ENST00000303230.4|HCN1|ENSG00000164588.4|hyperpolarization activated cyclic nucleotide-gated potassium channel 1
hg19_v2_chr7_+_30185406_30185417	1.96971	SOX3_SOX2	ENST00000324489.5|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr10_-_99393208_99393237	1.96777	SOX3_SOX2	ENST00000307450.6|MORN4|ENSG00000171160.13|MORN repeat containing 4
hg19_v2_chr20_+_44036620_44036658	1.96555	SOX3_SOX2	ENST00000372710.3|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr22_-_45404819_45404874	1.95743	SOX3_SOX2	ENST00000447824.3|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000404079.2|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000420689.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B 	ENST00000403565.1|PHF21B|ENSG00000056487.11|PHD finger protein 21B
hg19_v2_chr8_+_104831472_104831510	1.95207	SOX3_SOX2	ENST00000262231.10|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2 	ENST00000507740.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr1_-_177133998_177134018	1.9482	SOX3_SOX2	ENST00000367657.3|ASTN1|ENSG00000152092.11|astrotactin 1
hg19_v2_chr12_+_101188718_101188745	1.93787	SOX3_SOX2	ENST00000299222.9|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392977.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr12_+_101188547_101188585	1.91591	SOX3_SOX2	ENST00000546991.1|ANO4|ENSG00000151572.12|anoctamin 4 	ENST00000392979.3|ANO4|ENSG00000151572.12|anoctamin 4
hg19_v2_chr11_-_35287243_35287292	1.91462	SOX3_SOX2	ENST00000464522.2|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr19_+_55795493_55795534	1.91328	SOX3_SOX2	ENST00000309383.1|BRSK1|ENSG00000160469.12|BR serine/threonine kinase 1
hg19_v2_chr5_-_110062384_110062450	1.91275	SOX3_SOX2	ENST00000429839.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr16_+_3254247_3254247	1.90747	SOX3_SOX2	ENST00000304646.2|OR1F1|ENSG00000168124.2|olfactory receptor, family 1, subfamily F, member 1
hg19_v2_chr12_-_100378006_100378049	1.90285	SOX3_SOX2	ENST00000547776.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000329257.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000547010.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr17_+_57297807_57297923	1.90046	SOX3_SOX2	ENST00000284116.4|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581140.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1 	ENST00000581276.1|GDPD1|ENSG00000153982.6|glycerophosphodiester phosphodiesterase domain containing 1
hg19_v2_chr3_+_173116225_173116242	1.90007	SOX3_SOX2	ENST00000457714.1|NLGN1|ENSG00000169760.13|neuroligin 1
hg19_v2_chr2_-_47572105_47572151	1.8991	SOX3_SOX2	ENST00000419035.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000448713.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000450550.1|AC073283.4|ENSG00000234690.2|AC073283.4	ENST00000413185.2|AC073283.4|ENSG00000234690.2|AC073283.4
hg19_v2_chr3_+_35685113_35685152	1.89752	SOX3_SOX2	ENST00000419330.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr3_-_48470838_48470872	1.89684	SOX3_SOX2	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr6_-_28304152_28304282	1.89089	SOX3_SOX2	ENST00000435857.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr17_+_64961026_64961026	1.88746	SOX3_SOX2	ENST00000262138.3|CACNG4|ENSG00000075461.5|calcium channel, voltage-dependent, gamma subunit 4
hg19_v2_chr22_-_32651326_32651340	1.87854	SOX3_SOX2	ENST00000266086.4|SLC5A4|ENSG00000100191.4|solute carrier family 5 (glucose activated ion channel), member 4
hg19_v2_chr10_-_98116912_98116917	1.87826	SOX3_SOX2	ENST00000536387.1|OPALIN|ENSG00000197430.6|oligodendrocytic myelin paranodal and inner loop protein
hg19_v2_chr19_-_6502304_6502328	1.8757	SOX3_SOX2	ENST00000540257.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594276.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000594075.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000600216.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa 	ENST00000596926.1|TUBB4A|ENSG00000104833.6|tubulin, beta 4A class IVa
hg19_v2_chr6_+_97372734_97372760	1.87515	SOX3_SOX2	ENST00000539200.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr7_+_86274145_86274166	1.86824	SOX3_SOX2	ENST00000439827.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000394720.2|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3 	ENST00000421579.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr4_+_62067860_62067900	1.86265	SOX3_SOX2	ENST00000514591.1|LPHN3|ENSG00000150471.11|latrophilin 3
hg19_v2_chr1_-_95391315_95391357	1.86143	SOX3_SOX2	ENST00000545882.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000415017.1|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr2_+_105050794_105050854	1.86038	SOX3_SOX2	ENST00000429464.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000414442.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102 	ENST00000447380.1|AC013402.2|ENSG00000235597.1|long intergenic non-protein coding RNA 1102
hg19_v2_chr10_+_102106829_102106881	1.85733	SOX3_SOX2	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr10_-_124459284_124459345	1.85502	SOX3_SOX2	ENST00000432000.1|C10orf120|ENSG00000183559.7|chromosome 10 open reading frame 120 	ENST00000329446.4|C10orf120|ENSG00000183559.7|chromosome 10 open reading frame 120
hg19_v2_chr8_-_53322347_53322378	1.85154	SOX3_SOX2	ENST00000517580.1|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chrX_+_150869023_150869023	1.85136	SOX3_SOX2	ENST00000448324.1|PRRG3|ENSG00000130032.11|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
hg19_v2_chr2_-_86564776_86564813	1.85123	SOX3_SOX2	ENST00000165698.5|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000541910.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000535845.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr8_+_77316233_77316359	1.84873	SOX3_SOX2	ENST00000603284.1|RP11-706J10.2|ENSG00000270866.1|RP11-706J10.2	ENST00000603837.1|RP11-706J10.3|ENSG00000271167.1|long intergenic non-protein coding RNA 1109
hg19_v2_chr12_-_120805872_120805897	1.83991	SOX3_SOX2	ENST00000546985.1|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr22_+_42372764_42372868	1.83926	SOX3_SOX2	ENST00000396426.3|SEPT3|ENSG00000100167.15|septin 3 	ENST00000406029.1|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr14_+_100070869_100070893	1.83862	SOX3_SOX2	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr10_+_18429671_18429887	1.83749	SOX3_SOX2	ENST00000282343.8|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr2_+_19911450_19911476	1.83507	SOX3_SOX2	ENST00000432822.1|AC019055.1|ENSG00000235911.1|AC019055.1
hg19_v2_chr7_+_23145884_23145917	1.83073	SOX3_SOX2	ENST00000409689.1|KLHL7|ENSG00000122550.13|kelch-like family member 7 	ENST00000410047.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chrX_-_73072534_73072588	1.82886	SOX3_SOX2	ENST00000429829.1|XIST|ENSG00000229807.5|X inactive specific transcript (non-protein coding)
hg19_v2_chr2_-_224467093_224467221	1.82769	SOX3_SOX2	ENST00000305409.2|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr14_-_85996332_85996403	1.82643	SOX3_SOX2	ENST00000380722.1|RP11-497E19.1|ENSG00000205562.1|RP11-497E19.1
hg19_v2_chr8_-_120685608_120685693	1.82593	SOX3_SOX2	ENST00000427067.2|ENPP2|ENSG00000136960.8|ectonucleotide pyrophosphatase/phosphodiesterase 2
hg19_v2_chr14_+_85996507_85996572	1.8183	SOX3_SOX2	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr19_+_30719410_30719461	1.81675	SOX3_SOX2	ENST00000585628.1|ZNF536|ENSG00000198597.4|zinc finger protein 536 	ENST00000591488.1|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr19_-_51141196_51141302	1.81292	SOX3_SOX2	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chrX_-_138724994_138725023	1.80746	SOX3_SOX2	ENST00000536274.1|MCF2|ENSG00000101977.15|MCF.2 cell line derived transforming sequence
hg19_v2_chr17_+_75542997_75543029	1.806	SOX3_SOX2	ENST00000592651.1|RP11-13K12.1|ENSG00000267506.1|RP11-13K12.1	ENST00000590398.1|RP11-13K12.1|ENSG00000267506.1|RP11-13K12.1
hg19_v2_chr11_-_125351481_125351529	1.8037	SOX3_SOX2	ENST00000577924.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr2_-_183387283_183387304	1.79816	SOX3_SOX2	ENST00000435564.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr2_+_210444748_210444770	1.79002	SOX3_SOX2	ENST00000392194.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr2_+_166428839_166428859	1.78968	SOX3_SOX2	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr1_-_230513367_230513391	1.78922	SOX3_SOX2	ENST00000321327.2|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5 	ENST00000525115.1|PGBD5|ENSG00000177614.5|piggyBac transposable element derived 5
hg19_v2_chr4_+_71588372_71588404	1.78522	SOX3_SOX2	ENST00000536664.1|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr11_-_111794446_111794471	1.78067	SOX3_SOX2	ENST00000527950.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr4_+_41614909_41614926	1.779	SOX3_SOX2	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr9_-_27297126_27297140	1.77663	SOX3_SOX2	ENST00000380031.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000537675.1|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated 	ENST00000380032.3|EQTN|ENSG00000120160.6|equatorin, sperm acrosome associated
hg19_v2_chr7_-_137028498_137028520	1.77584	SOX3_SOX2	ENST00000393083.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr6_+_97372645_97372665	1.77111	SOX3_SOX2	ENST00000536676.1|KLHL32|ENSG00000186231.12|kelch-like family member 32 	ENST00000544166.1|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chrX_-_13956737_13956808	1.76907	SOX3_SOX2	ENST00000454189.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr7_-_137028534_137028611	1.76824	SOX3_SOX2	ENST00000348225.2|PTN|ENSG00000105894.7|pleiotrophin
hg19_v2_chr7_+_87563458_87563489	1.76453	SOX3_SOX2	ENST00000398204.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr16_-_71918033_71918107	1.76354	SOX3_SOX2	ENST00000425432.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000313565.6|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000568666.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000562797.1|ZNF821|ENSG00000102984.10|zinc finger protein 821 	ENST00000564134.1|ZNF821|ENSG00000102984.10|zinc finger protein 821
hg19_v2_chr4_+_41540160_41540196	1.75967	SOX3_SOX2	ENST00000503057.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000511496.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr7_+_140774032_140774032	1.75838	SOX3_SOX2	ENST00000565468.1|TMEM178B|ENSG00000261115.1|transmembrane protein 178B
hg19_v2_chr11_-_125550764_125550773	1.75158	SOX3_SOX2	ENST00000527795.1|ACRV1|ENSG00000134940.9|acrosomal vesicle protein 1
hg19_v2_chr16_-_29910365_29910430	1.74977	SOX3_SOX2	ENST00000346932.5|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000350527.3|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000537485.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2 	ENST00000568380.1|SEZ6L2|ENSG00000174938.10|seizure related 6 homolog (mouse)-like 2
hg19_v2_chr8_-_144242020_144242128	1.7447	SOX3_SOX2	ENST00000414417.2|LY6H|ENSG00000176956.8|lymphocyte antigen 6 complex, locus H
hg19_v2_chr12_-_16759711_16759734	1.74461	SOX3_SOX2	ENST00000447609.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr14_+_85996471_85996497	1.74336	SOX3_SOX2	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr18_-_3874752_3874767	1.73664	SOX3_SOX2	ENST00000534970.1|DLGAP1|ENSG00000170579.10|discs, large (Drosophila) homolog-associated protein 1
hg19_v2_chr1_-_205391178_205391214	1.73556	SOX3_SOX2	ENST00000367153.4|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367151.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000391936.2|LEMD1|ENSG00000186007.5|LEM domain containing 1 	ENST00000367149.3|LEMD1|ENSG00000186007.5|LEM domain containing 1
hg19_v2_chrX_-_72097698_72097698	1.73392	SOX3_SOX2	ENST00000373530.1|DMRTC1|ENSG00000159123.10|DMRT-like family C1
hg19_v2_chr12_-_16760021_16760099	1.72782	SOX3_SOX2	ENST00000540445.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr8_-_18541603_18541650	1.7249	SOX3_SOX2	ENST00000428502.2|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr10_-_25241499_25241541	1.72413	SOX3_SOX2	ENST00000376378.1|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000376376.3|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1 	ENST00000320152.6|PRTFDC1|ENSG00000099256.14|phosphoribosyl transferase domain containing 1
hg19_v2_chr7_+_87563557_87563735	1.71886	SOX3_SOX2	ENST00000439864.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000412441.1|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398201.4|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000265727.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000315984.7|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22 	ENST00000398209.3|ADAM22|ENSG00000008277.10|ADAM metallopeptidase domain 22
hg19_v2_chr1_-_26231589_26231635	1.71811	SOX3_SOX2	ENST00000374291.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chr20_+_33292068_33292164	1.71106	SOX3_SOX2	ENST00000374810.3|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000374809.2|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2 	ENST00000451665.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chr19_-_17375541_17375605	1.70967	SOX3_SOX2	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr12_-_6233828_6233843	1.70945	SOX3_SOX2	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chrX_+_153030941_153030984	1.70914	SOX3_SOX2	ENST00000538282.1|PLXNB3|ENSG00000198753.7|plexin B3
hg19_v2_chr10_+_23216944_23217002	1.70883	SOX3_SOX2	ENST00000298032.5|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409983.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000409049.3|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr10_-_62060232_62060246	1.70863	SOX3_SOX2	ENST00000503925.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr14_+_62584197_62584208	1.70502	SOX3_SOX2	ENST00000334389.4|LINC00643|ENSG00000186369.5|long intergenic non-protein coding RNA 643
hg19_v2_chr1_-_85930246_85930289	1.70284	SOX3_SOX2	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr6_+_13925318_13925424	1.70138	SOX3_SOX2	ENST00000423553.2|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000537388.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr2_+_210518057_210518117	1.70085	SOX3_SOX2	ENST00000452717.1|MAP2|ENSG00000078018.15|microtubule-associated protein 2
hg19_v2_chr6_+_155538093_155538109	1.69986	SOX3_SOX2	ENST00000462408.2|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr15_-_44486632_44486664	1.69957	SOX3_SOX2	ENST00000484674.1|FRMD5|ENSG00000171877.15|FERM domain containing 5
hg19_v2_chr2_+_131513864_131513922	1.69866	SOX3_SOX2	ENST00000458606.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3 	ENST00000423981.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr3_-_148939598_148939622	1.69461	SOX3_SOX2	ENST00000455472.3|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr3_-_195310802_195310818	1.69284	SOX3_SOX2	ENST00000421243.1|APOD|ENSG00000189058.4|apolipoprotein D 	ENST00000453131.1|APOD|ENSG00000189058.4|apolipoprotein D
hg19_v2_chr3_+_164924769_164924801	1.689	SOX3_SOX2	ENST00000494915.1|RP11-85M11.2|ENSG00000244128.1|RP11-85M11.2
hg19_v2_chrX_+_135579238_135579416	1.68735	SOX3_SOX2	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr7_+_95401877_95401948	1.68546	SOX3_SOX2	ENST00000524053.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000324972.6|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000537881.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000437599.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000359388.4|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1 	ENST00000413338.1|DYNC1I1|ENSG00000158560.10|dynein, cytoplasmic 1, intermediate chain 1
hg19_v2_chrX_-_73834449_73834481	1.6798	SOX3_SOX2	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr5_-_146833222_146833261	1.67868	SOX3_SOX2	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr4_-_90757364_90757396	1.67696	SOX3_SOX2	ENST00000508895.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chr9_-_23826298_23826344	1.6761	SOX3_SOX2	ENST00000380117.1|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr2_+_220492287_220492338	1.67356	SOX3_SOX2	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr17_+_30813576_30813637	1.67324	SOX3_SOX2	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr1_-_153066998_153067008	1.67308	SOX3_SOX2	ENST00000368750.3|SPRR2E|ENSG00000203785.4|small proline-rich protein 2E
hg19_v2_chr19_-_5340730_5340859	1.67263	SOX3_SOX2	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr19_-_38746979_38747050	1.66801	SOX3_SOX2	ENST00000591291.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr12_-_11036844_11036861	1.66782	SOX3_SOX2	ENST00000428168.2|PRH1|ENSG00000231887.2|proline-rich protein HaeIII subfamily 1
hg19_v2_chr11_+_196738_196779	1.66493	SOX3_SOX2	ENST00000325113.4|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3 	ENST00000342593.5|ODF3|ENSG00000177947.9|outer dense fiber of sperm tails 3
hg19_v2_chr2_+_153191706_153191751	1.66362	SOX3_SOX2	ENST00000288670.9|FMNL2|ENSG00000157827.15|formin-like 2
hg19_v2_chr17_-_42441204_42441243	1.66325	SOX3_SOX2	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr1_-_182642017_182642049	1.66274	SOX3_SOX2	ENST00000367557.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8 	ENST00000258302.4|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr13_-_103053946_103054124	1.66118	SOX3_SOX2	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr17_+_70036164_70036164	1.66106	SOX3_SOX2	ENST00000602013.1|AC007461.1|ENSG00000267893.1|Uncharacterized protein
hg19_v2_chr2_-_183387430_183387465	1.65998	SOX3_SOX2	ENST00000410103.1|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr14_-_25519095_25519280	1.65844	SOX3_SOX2	ENST00000419632.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000358326.2|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000396700.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn) 	ENST00000548724.1|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr10_-_21806759_21806848	1.65493	SOX3_SOX2	ENST00000444772.3|SKIDA1|ENSG00000180592.12|SKI/DACH domain containing 1
hg19_v2_chr18_+_32455201_32455314	1.65451	SOX3_SOX2	ENST00000590831.2|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr22_+_42372970_42372994	1.65373	SOX3_SOX2	ENST00000291236.11|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr6_+_12749657_12749699	1.65299	SOX3_SOX2	ENST00000406205.2|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr15_+_52043813_52043864	1.65166	SOX3_SOX2	ENST00000435126.2|TMOD2|ENSG00000128872.5|tropomodulin 2 (neuronal)
hg19_v2_chr12_+_41831485_41831555	1.65103	SOX3_SOX2	ENST00000539469.2|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4 	ENST00000298919.7|PDZRN4|ENSG00000165966.10|PDZ domain containing ring finger 4
hg19_v2_chr17_+_43972010_43972040	1.6505	SOX3_SOX2	ENST00000334239.8|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000446361.3|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr14_-_57272366_57272391	1.65006	SOX3_SOX2	ENST00000554788.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554845.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000408990.3|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr12_+_31079652_31079892	1.6488	SOX3_SOX2	ENST00000546076.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000535215.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000544427.1|TSPAN11|ENSG00000110900.10|tetraspanin 11 	ENST00000261177.9|TSPAN11|ENSG00000110900.10|tetraspanin 11
hg19_v2_chr1_-_234667504_234667525	1.64765	SOX3_SOX2	ENST00000421207.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1	ENST00000435574.1|RP5-855F14.1|ENSG00000231768.1|RP5-855F14.1
hg19_v2_chr2_-_170219037_170219050	1.64738	SOX3_SOX2	ENST00000443831.1|LRP2|ENSG00000081479.8|low density lipoprotein receptor-related protein 2
hg19_v2_chr4_-_90756769_90756846	1.64524	SOX3_SOX2	ENST00000345009.4|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000505199.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor) 	ENST00000502987.1|SNCA|ENSG00000145335.11|synuclein, alpha (non A4 component of amyloid precursor)
hg19_v2_chrX_-_72434628_72434722	1.64303	SOX3_SOX2	ENST00000536638.1|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2 	ENST00000373517.3|NAP1L2|ENSG00000186462.7|nucleosome assembly protein 1-like 2
hg19_v2_chr1_-_112032284_112032358	1.63989	SOX3_SOX2	ENST00000414219.1|ADORA3|ENSG00000121933.13|adenosine A3 receptor
hg19_v2_chr14_-_25519317_25519503	1.63958	SOX3_SOX2	ENST00000323944.5|STXBP6|ENSG00000168952.11|syntaxin binding protein 6 (amisyn)
hg19_v2_chr19_+_56989609_56989625	1.63882	SOX3_SOX2	ENST00000601875.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr2_+_168725458_168725458	1.63836	SOX3_SOX2	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr4_+_114214125_114214151	1.63654	SOX3_SOX2	ENST00000509550.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr12_+_49297899_49297955	1.63625	SOX3_SOX2	ENST00000552942.1|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65 	ENST00000320516.4|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr6_+_159290917_159290971	1.63589	SOX3_SOX2	ENST00000367072.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr19_-_7990991_7991059	1.63341	SOX3_SOX2	ENST00000318978.4|CTXN1|ENSG00000178531.4|cortexin 1
hg19_v2_chr20_+_36149602_36149665	1.63211	SOX3_SOX2	ENST00000062104.2|NNAT|ENSG00000053438.7|neuronatin 	ENST00000346199.2|NNAT|ENSG00000053438.7|neuronatin
hg19_v2_chrX_+_70435044_70435109	1.63147	SOX3_SOX2	ENST00000374029.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000374022.3|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa 	ENST00000447581.1|GJB1|ENSG00000169562.9|gap junction protein, beta 1, 32kDa
hg19_v2_chr17_+_74864476_74864592	1.63083	SOX3_SOX2	ENST00000301618.4|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 	ENST00000569840.2|MGAT5B|ENSG00000167889.8|mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
hg19_v2_chr3_-_178103144_178103205	1.62744	SOX3_SOX2	ENST00000417383.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000418585.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000411727.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1	ENST00000439810.1|RP11-33A14.1|ENSG00000223930.1|RP11-33A14.1
hg19_v2_chr10_+_48359344_48359376	1.62198	SOX3_SOX2	ENST00000412534.1|ZNF488|ENSG00000165388.8|zinc finger protein 488 	ENST00000444585.1|ZNF488|ENSG00000165388.8|zinc finger protein 488
hg19_v2_chr3_-_149688655_149688737	1.62183	SOX3_SOX2	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr13_-_84456527_84456541	1.61903	SOX3_SOX2	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr17_+_18128896_18128983	1.61794	SOX3_SOX2	ENST00000316843.4|LLGL1|ENSG00000131899.6|lethal giant larvae homolog 1 (Drosophila)
hg19_v2_chr17_+_43971643_43971748	1.61616	SOX3_SOX2	ENST00000344290.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000262410.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000351559.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000340799.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000535772.1|MAPT|ENSG00000186868.11|microtubule-associated protein tau 	ENST00000347967.5|MAPT|ENSG00000186868.11|microtubule-associated protein tau
hg19_v2_chr5_-_27038683_27038700	1.61419	SOX3_SOX2	ENST00000511822.1|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin) 	ENST00000231021.4|CDH9|ENSG00000113100.5|cadherin 9, type 2 (T1-cadherin)
hg19_v2_chr8_-_17579726_17579759	1.61127	SOX3_SOX2	ENST00000381861.3|MTUS1|ENSG00000129422.9|microtubule associated tumor suppressor 1
hg19_v2_chr10_+_18689637_18689742	1.60912	SOX3_SOX2	ENST00000377315.4|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr11_-_57417367_57417401	1.60851	SOX3_SOX2	ENST00000534810.1|YPEL4|ENSG00000166793.6|yippee-like 4 (Drosophila)
hg19_v2_chrX_-_13835398_13835442	1.60445	SOX3_SOX2	ENST00000475307.1|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr20_+_61448376_61448418	1.60183	SOX3_SOX2	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr3_-_69590486_69590496	1.6007	SOX3_SOX2	ENST00000497880.1|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr3_+_123813509_123813528	1.59974	SOX3_SOX2	ENST00000460856.1|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase 	ENST00000240874.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chr8_-_22550815_22550844	1.59971	SOX3_SOX2	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr18_+_72201829_72201845	1.59516	SOX3_SOX2	ENST00000582365.1|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
hg19_v2_chrX_+_72062802_72062802	1.59432	SOX3_SOX2	ENST00000373533.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chr14_+_101299520_101299615	1.5941	SOX3_SOX2	ENST00000455531.1|MEG3|ENSG00000214548.10|maternally expressed 3 (non-protein coding)
hg19_v2_chr19_-_57967854_57967854	1.58706	SOX3_SOX2	ENST00000321039.3|VN1R1|ENSG00000178201.3|vomeronasal 1 receptor 1
hg19_v2_chr12_+_64238539_64238600	1.58298	SOX3_SOX2	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chrX_+_37850026_37850070	1.57862	SOX3_SOX2	ENST00000341016.3|CXorf27|ENSG00000187516.5|chromosome X open reading frame 27
hg19_v2_chr6_-_55443831_55443908	1.57719	SOX3_SOX2	ENST00000428842.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000358072.5|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 	ENST00000508459.1|HMGCLL1|ENSG00000146151.8|3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1
hg19_v2_chr14_+_53019993_53020137	1.57587	SOX3_SOX2	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr7_-_22234381_22234430	1.57578	SOX3_SOX2	ENST00000458533.1|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr19_-_48495427_48495427	1.57029	SOX3_SOX2	ENST00000344839.3|BSPH1|ENSG00000188334.3|binder of sperm protein homolog 1
hg19_v2_chr22_-_23484246_23484283	1.56896	SOX3_SOX2	ENST00000216036.4|RTDR1|ENSG00000100218.7|rhabdoid tumor deletion region gene 1
hg19_v2_chr16_+_27078219_27078229	1.56676	SOX3_SOX2	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr2_-_97534312_97534345	1.56499	SOX3_SOX2	ENST00000442264.1|SEMA4C|ENSG00000168758.6|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
hg19_v2_chr19_-_17375527_17375538	1.56468	SOX3_SOX2	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr20_-_35329063_35329078	1.5642	SOX3_SOX2	ENST00000422536.1|NDRG3|ENSG00000101079.16|NDRG family member 3
hg19_v2_chr15_+_77224045_77224121	1.55832	SOX3_SOX2	ENST00000320963.5|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain 	ENST00000394883.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr5_-_111091948_111091994	1.5567	SOX3_SOX2	ENST00000447165.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr18_+_9885760_9885780	1.55614	SOX3_SOX2	ENST00000536353.2|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa) 	ENST00000584255.1|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr1_+_215256467_215256622	1.55612	SOX3_SOX2	ENST00000391894.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2 	ENST00000444842.2|KCNK2|ENSG00000082482.9|potassium channel, subfamily K, member 2
hg19_v2_chr1_-_111174054_111174096	1.5551	SOX3_SOX2	ENST00000369770.3|KCNA2|ENSG00000177301.9|potassium voltage-gated channel, shaker-related subfamily, member 2
hg19_v2_chr2_+_217732661_217732735	1.55197	SOX3_SOX2	ENST00000451711.1|AC007557.3|ENSG00000227021.1|AC007557.3
hg19_v2_chr12_+_49212514_49212692	1.55035	SOX3_SOX2	ENST00000301050.2|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000548279.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547230.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr11_-_117667806_117667976	1.54587	SOX3_SOX2	ENST00000527706.1|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1 	ENST00000321322.6|DSCAML1|ENSG00000177103.9|Down syndrome cell adhesion molecule like 1
hg19_v2_chr19_-_44143939_44144010	1.54408	SOX3_SOX2	ENST00000222374.2|CADM4|ENSG00000105767.2|cell adhesion molecule 4
hg19_v2_chr16_-_11367452_11367491	1.54406	SOX3_SOX2	ENST00000327157.2|PRM3|ENSG00000178257.2|protamine 3
hg19_v2_chr22_-_38480100_38480159	1.54317	SOX3_SOX2	ENST00000427592.1|SLC16A8|ENSG00000100156.6|solute carrier family 16 (monocarboxylate transporter), member 8
hg19_v2_chr9_-_95298314_95298340	1.54278	SOX3_SOX2	ENST00000344604.5|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific 	ENST00000375540.1|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr19_-_44124019_44124030	1.54124	SOX3_SOX2	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr15_+_34310428_34310428	1.5386	SOX3_SOX2	ENST00000557872.1|CHRM5|ENSG00000184984.8|cholinergic receptor, muscarinic 5
hg19_v2_chr15_-_41166414_41166487	1.53316	SOX3_SOX2	ENST00000220507.4|RHOV|ENSG00000104140.6|ras homolog family member V
hg19_v2_chr9_-_127269661_127269719	1.52883	SOX3_SOX2	ENST00000373588.4|NR5A1|ENSG00000136931.5|nuclear receptor subfamily 5, group A, member 1
hg19_v2_chr22_+_42372931_42372947	1.5261	SOX3_SOX2	ENST00000328414.8|SEPT3|ENSG00000100167.15|septin 3 	ENST00000396425.3|SEPT3|ENSG00000100167.15|septin 3
hg19_v2_chr15_-_65360276_65360338	1.52475	SOX3_SOX2	ENST00000421977.3|RASL12|ENSG00000103710.6|RAS-like, family 12
hg19_v2_chr4_+_95679072_95679125	1.52424	SOX3_SOX2	ENST00000515059.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr9_+_133971909_133971943	1.52246	SOX3_SOX2	ENST00000247291.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372302.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372300.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like 	ENST00000372298.1|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr6_-_128841503_128841870	1.52157	SOX3_SOX2	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr22_-_27014043_27014073	1.51795	SOX3_SOX2	ENST00000215939.2|CRYBB1|ENSG00000100122.5|crystallin, beta B1
hg19_v2_chr5_-_96478466_96478576	1.51778	SOX3_SOX2	ENST00000274382.4|LIX1|ENSG00000145721.7|Lix1 homolog (chicken)
hg19_v2_chr6_+_30848740_30848768	1.51631	SOX3_SOX2	ENST00000505534.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr3_-_167813672_167813763	1.51495	SOX3_SOX2	ENST00000470487.1|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr14_+_96505659_96505664	1.51009	SOX3_SOX2	ENST00000555004.1|C14orf132|ENSG00000227051.4|chromosome 14 open reading frame 132
hg19_v2_chr8_+_67405794_67405862	1.50997	SOX3_SOX2	ENST00000522977.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46 	ENST00000480005.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr6_+_155537771_155537868	1.50813	SOX3_SOX2	ENST00000275246.7|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr5_+_139175380_139175431	1.50627	SOX3_SOX2	ENST00000274710.3|PSD2|ENSG00000146005.3|pleckstrin and Sec7 domain containing 2
hg19_v2_chr9_-_95298254_95298282	1.50515	SOX3_SOX2	ENST00000444490.2|ECM2|ENSG00000106823.8|extracellular matrix protein 2, female organ and adipocyte specific
hg19_v2_chr8_+_67405755_67405789	1.50515	SOX3_SOX2	ENST00000521495.1|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr7_-_16921601_16921614	1.50317	SOX3_SOX2	ENST00000402239.3|AGR3|ENSG00000173467.4|anterior gradient 3 	ENST00000310398.2|AGR3|ENSG00000173467.4|anterior gradient 3 	ENST00000414935.1|AGR3|ENSG00000173467.4|anterior gradient 3
hg19_v2_chr4_-_20985632_20985664	1.50207	SOX3_SOX2	ENST00000359001.5|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr7_+_86273952_86274090	1.50123	SOX3_SOX2	ENST00000536043.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr11_+_22359562_22359643	1.49694	SOX3_SOX2	ENST00000263160.3|SLC17A6|ENSG00000091664.7|solute carrier family 17 (vesicular glutamate transporter), member 6
hg19_v2_chr19_+_50194360_50194410	1.49198	SOX3_SOX2	ENST00000323446.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000392518.4|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598396.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000598293.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000354199.5|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000405931.2|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C 	ENST00000602019.1|CPT1C|ENSG00000169169.10|carnitine palmitoyltransferase 1C
hg19_v2_chr13_+_25946201_25946215	1.49167	SOX3_SOX2	ENST00000381655.2|ATP8A2|ENSG00000132932.12|ATPase, aminophospholipid transporter, class I, type 8A, member 2
hg19_v2_chr11_-_31832207_31832226	1.49061	SOX3_SOX2	ENST00000379109.2|PAX6|ENSG00000007372.16|paired box 6
hg19_v2_chr9_-_102582155_102582189	1.49005	SOX3_SOX2	ENST00000427039.1|RP11-554F20.1|ENSG00000237461.1|RP11-554F20.1
hg19_v2_chrX_-_13835147_13835224	1.4868	SOX3_SOX2	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chrX_+_51927919_51927991	1.48572	SOX3_SOX2	ENST00000416960.1|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr1_+_2066252_2066369	1.48268	SOX3_SOX2	ENST00000466352.1|PRKCZ|ENSG00000067606.11|protein kinase C, zeta
hg19_v2_chr3_-_93747425_93747454	1.48116	SOX3_SOX2	ENST00000315099.2|STX19|ENSG00000178750.2|syntaxin 19
hg19_v2_chr11_-_84028180_84028202	1.47992	SOX3_SOX2	ENST00000280241.8|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chrX_-_151619746_151619830	1.47373	SOX3_SOX2	ENST00000370314.4|GABRA3|ENSG00000011677.8|gamma-aminobutyric acid (GABA) A receptor, alpha 3
hg19_v2_chr4_+_2061119_2061239	1.47264	SOX3_SOX2	ENST00000423729.2|NAT8L|ENSG00000185818.7|N-acetyltransferase 8-like (GCN5-related, putative)
hg19_v2_chr3_+_26664291_26664329	1.47129	SOX3_SOX2	ENST00000396641.2|LRRC3B|ENSG00000179796.7|leucine rich repeat containing 3B
hg19_v2_chr15_-_89764929_89764982	1.47015	SOX3_SOX2	ENST00000268125.5|RLBP1|ENSG00000140522.7|retinaldehyde binding protein 1
hg19_v2_chr15_+_71184931_71184974	1.46902	SOX3_SOX2	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr16_-_67217844_67217943	1.4658	SOX3_SOX2	ENST00000563902.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000561621.1|KIAA0895L|ENSG00000196123.8|KIAA0895-like 	ENST00000290881.7|KIAA0895L|ENSG00000196123.8|KIAA0895-like
hg19_v2_chr1_+_164528866_164528877	1.46378	SOX3_SOX2	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr1_-_235813290_235813323	1.46162	SOX3_SOX2	ENST00000391854.2|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chrX_+_72062617_72062617	1.46085	SOX3_SOX2	ENST00000440247.1|DMRTC1B|ENSG00000184911.10|DMRT-like family C1B
hg19_v2_chrX_-_51812268_51812368	1.44993	SOX3_SOX2	ENST00000486010.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000497164.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000360134.6|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000485287.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000335504.5|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B 	ENST00000431659.1|MAGED4B|ENSG00000187243.12|melanoma antigen family D, 4B
hg19_v2_chr7_-_78400364_78400403	1.44227	SOX3_SOX2	ENST00000535697.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr5_+_140729649_140729828	1.4422	SOX3_SOX2	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr22_-_20138302_20138399	1.44188	SOX3_SOX2	ENST00000540078.1|AC006547.14|ENSG00000234409.4|uncharacterized protein LOC388849  	ENST00000439765.2|AC006547.14|ENSG00000234409.4|uncharacterized protein LOC388849
hg19_v2_chr12_-_62653903_62653959	1.4414	SOX3_SOX2	ENST00000552075.1|FAM19A2|ENSG00000198673.6|family with sequence similarity 19 (chemokine (C-C motif)-like), member A2
hg19_v2_chr4_-_99578776_99578786	1.44093	SOX3_SOX2	ENST00000515287.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr11_+_369804_369804	1.43905	SOX3_SOX2	ENST00000329962.6|B4GALNT4|ENSG00000182272.7|beta-1,4-N-acetyl-galactosaminyl transferase 4
hg19_v2_chr10_+_115999089_115999141	1.43503	SOX3_SOX2	ENST00000392982.3|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr1_-_182360498_182360541	1.43458	SOX3_SOX2	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr17_+_31255023_31255089	1.4294	SOX3_SOX2	ENST00000395149.2|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000261713.4|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chr6_+_90192974_90193122	1.42913	SOX3_SOX2	ENST00000520458.1|ANKRD6|ENSG00000135299.12|ankyrin repeat domain 6
hg19_v2_chr9_+_132934835_132934857	1.42834	SOX3_SOX2	ENST00000372398.3|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr4_-_54424366_54424394	1.42762	SOX3_SOX2	ENST00000306888.2|LNX1|ENSG00000072201.9|ligand of numb-protein X 1, E3 ubiquitin protein ligase
hg19_v2_chr8_+_87878640_87878673	1.42715	SOX3_SOX2	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chr4_-_186732892_186732916	1.42401	SOX3_SOX2	ENST00000451958.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439914.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000428330.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000429056.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chrX_-_107975917_107975917	1.42296	SOX3_SOX2	ENST00000563887.1|RP6-24A23.6|ENSG00000260548.1|Uncharacterized protein
hg19_v2_chr1_-_153029980_153030013	1.42188	SOX3_SOX2	ENST00000392653.2|SPRR2A|ENSG00000241794.1|small proline-rich protein 2A
hg19_v2_chr14_-_22005018_22005040	1.41823	SOX3_SOX2	ENST00000546363.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr7_+_86273700_86273716	1.41343	SOX3_SOX2	ENST00000546348.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr17_-_9939854_9939889	1.41301	SOX3_SOX2	ENST00000584146.2|GAS7|ENSG00000007237.14|growth arrest-specific 7
hg19_v2_chr12_-_67072714_67072925	1.41147	SOX3_SOX2	ENST00000545666.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000398016.3|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000359742.4|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000286445.7|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1 	ENST00000538211.1|GRIP1|ENSG00000155974.7|glutamate receptor interacting protein 1
hg19_v2_chr1_+_47137445_47137533	1.40992	SOX3_SOX2	ENST00000569393.1|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000334122.4|TEX38|ENSG00000186118.7|testis expressed 38 	ENST00000415500.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr18_-_74844727_74844800	1.40777	SOX3_SOX2	ENST00000355994.2|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000579129.1|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr3_-_193272874_193272911	1.40643	SOX3_SOX2	ENST00000342695.4|ATP13A4|ENSG00000127249.10|ATPase type 13A4
hg19_v2_chr8_+_24151620_24151647	1.40633	SOX3_SOX2	ENST00000437154.2|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr4_+_4388805_4388855	1.39429	SOX3_SOX2	ENST00000504171.1|NSG1|ENSG00000168824.10|Homo sapiens neuron specific gene family member 1 (NSG1), transcript variant 3, mRNA.
hg19_v2_chr6_-_161695042_161695064	1.3928	SOX3_SOX2	ENST00000366908.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366911.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366905.3|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr8_-_53322303_53322340	1.39138	SOX3_SOX2	ENST00000276480.7|ST18|ENSG00000147488.7|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)
hg19_v2_chr6_+_101847105_101847154	1.38553	SOX3_SOX2	ENST00000369137.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000318991.6|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr3_+_1134260_1134350	1.38101	SOX3_SOX2	ENST00000446702.2|CNTN6|ENSG00000134115.8|contactin 6 	ENST00000539053.1|CNTN6|ENSG00000134115.8|contactin 6 	ENST00000350110.2|CNTN6|ENSG00000134115.8|contactin 6
hg19_v2_chr12_-_82152444_82152475	1.38071	SOX3_SOX2	ENST00000549325.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000550584.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr2_+_69240415_69240438	1.37938	SOX3_SOX2	ENST00000409829.3|ANTXR1|ENSG00000169604.15|anthrax toxin receptor 1
hg19_v2_chr3_-_181160240_181160289	1.37919	SOX3_SOX2	ENST00000460993.1|RP11-275H4.1|ENSG00000241231.1|RP11-275H4.1
hg19_v2_chr1_+_87012922_87012932	1.37674	SOX3_SOX2	ENST00000263723.5|CLCA4|ENSG00000016602.8|chloride channel accessory 4
hg19_v2_chr22_-_30970560_30970577	1.37583	SOX3_SOX2	ENST00000402369.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1 	ENST00000406361.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr14_+_23846328_23846461	1.37486	SOX3_SOX2	ENST00000382809.2|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chr8_-_18744528_18744585	1.37158	SOX3_SOX2	ENST00000523619.1|PSD3|ENSG00000156011.12|pleckstrin and Sec7 domain containing 3
hg19_v2_chr5_-_115910091_115910141	1.37074	SOX3_SOX2	ENST00000257414.8|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr20_+_58179582_58179603	1.36852	SOX3_SOX2	ENST00000371015.1|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3 	ENST00000395639.4|PHACTR3|ENSG00000087495.12|phosphatase and actin regulator 3
hg19_v2_chr12_-_88974236_88974256	1.36765	SOX3_SOX2	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr8_+_63161491_63161522	1.36615	SOX3_SOX2	ENST00000523211.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3 	ENST00000524201.1|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr3_+_49977440_49977482	1.35985	SOX3_SOX2	ENST00000442092.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000266022.4|RBM6|ENSG00000004534.10|RNA binding motif protein 6 	ENST00000443081.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr12_-_99288536_99288677	1.35693	SOX3_SOX2	ENST00000549797.1|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000333732.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000341752.7|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr4_-_174320687_174320687	1.35444	SOX3_SOX2	ENST00000296506.3|SCRG1|ENSG00000164106.3|stimulator of chondrogenesis 1
hg19_v2_chr6_-_28303901_28303975	1.35136	SOX3_SOX2	ENST00000439158.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000446474.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000414431.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000344279.6|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31 	ENST00000453745.1|ZSCAN31|ENSG00000235109.3|zinc finger and SCAN domain containing 31
hg19_v2_chr9_+_12685439_12685491	1.35088	SOX3_SOX2	ENST00000473763.1|TYRP1|ENSG00000107165.8|tyrosinase-related protein 1
hg19_v2_chr15_+_77223960_77223994	1.35049	SOX3_SOX2	ENST00000394885.3|RCN2|ENSG00000117906.9|reticulocalbin 2, EF-hand calcium binding domain
hg19_v2_chr16_+_15528332_15528385	1.34672	SOX3_SOX2	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr9_+_133971863_133971897	1.344	SOX3_SOX2	ENST00000372309.3|AIF1L|ENSG00000126878.8|allograft inflammatory factor 1-like
hg19_v2_chr6_-_165989936_165989936	1.34366	SOX3_SOX2	ENST00000354448.4|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr4_+_41614720_41614734	1.34069	SOX3_SOX2	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr17_-_43138463_43138505	1.34005	SOX3_SOX2	ENST00000310604.4|DCAKD|ENSG00000172992.7|dephospho-CoA kinase domain containing
hg19_v2_chr11_-_123525289_123525341	1.33896	SOX3_SOX2	ENST00000392770.2|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000299333.3|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit 	ENST00000530277.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr5_+_15500280_15500312	1.3384	SOX3_SOX2	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr17_-_79359154_79359164	1.33565	SOX3_SOX2	ENST00000572077.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr3_+_35680339_35680437	1.33127	SOX3_SOX2	ENST00000450234.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr6_-_43478239_43478424	1.32986	SOX3_SOX2	ENST00000372441.1|LRRC73|ENSG00000204052.4|leucine rich repeat containing 73
hg19_v2_chr5_+_121465234_121465263	1.32942	SOX3_SOX2	ENST00000504912.1|ZNF474|ENSG00000164185.4|zinc finger protein 474 	ENST00000505843.1|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr12_+_53443963_53443970	1.32577	SOX3_SOX2	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chrX_-_140336629_140336655	1.32463	SOX3_SOX2	ENST00000358993.2|SPANXC|ENSG00000198573.6|SPANX family, member C
hg19_v2_chr9_+_67968793_67968793	1.32303	SOX3_SOX2	ENST00000417488.1|RP11-195B21.3|ENSG00000155282.7|Protein LOC644249
hg19_v2_chr11_-_76155700_76155736	1.32076	SOX3_SOX2	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr20_-_30458491_30458550	1.32029	SOX3_SOX2	ENST00000339738.5|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr3_+_140947563_140947577	1.31771	SOX3_SOX2	ENST00000505013.1|ACPL2|ENSG00000155893.7|acid phosphatase-like 2
hg19_v2_chr6_+_159291090_159291223	1.31736	SOX3_SOX2	ENST00000367073.4|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99 	ENST00000608817.1|C6orf99|ENSG00000203711.7|chromosome 6 open reading frame 99
hg19_v2_chr19_-_47164386_47164456	1.31592	SOX3_SOX2	ENST00000391916.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3 	ENST00000410105.2|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr3_+_54157480_54157547	1.31398	SOX3_SOX2	ENST00000490478.1|CACNA2D3|ENSG00000157445.10|calcium channel, voltage-dependent, alpha 2/delta subunit 3
hg19_v2_chr22_-_30970498_30970541	1.31327	SOX3_SOX2	ENST00000431313.1|GAL3ST1|ENSG00000128242.8|galactose-3-O-sulfotransferase 1
hg19_v2_chr4_+_113970772_113970885	1.31171	SOX3_SOX2	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr3_-_149688502_149688526	1.30878	SOX3_SOX2	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr7_-_100061869_100061900	1.30632	SOX3_SOX2	ENST00000332375.3|C7orf61|ENSG00000185955.4|chromosome 7 open reading frame 61
hg19_v2_chr4_+_89206076_89206103	1.30229	SOX3_SOX2	ENST00000500009.2|RP11-10L7.1|ENSG00000246375.2|RP11-10L7.1
hg19_v2_chr1_-_173020056_173020103	1.29899	SOX3_SOX2	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr7_-_30009542_30009562	1.29579	SOX3_SOX2	ENST00000438497.1|SCRN1|ENSG00000136193.12|secernin 1
hg19_v2_chr5_+_36606992_36607061	1.29403	SOX3_SOX2	ENST00000505202.1|SLC1A3|ENSG00000079215.9|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v2_chr12_-_16759440_16759465	1.29383	SOX3_SOX2	ENST00000537304.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr8_-_17270809_17270848	1.29283	SOX3_SOX2	ENST00000180173.5|MTMR7|ENSG00000003987.9|myotubularin related protein 7 	ENST00000521857.1|MTMR7|ENSG00000003987.9|myotubularin related protein 7
hg19_v2_chr20_-_5485166_5485259	1.29183	SOX3_SOX2	ENST00000589201.1|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654 	ENST00000379053.4|LINC00654|ENSG00000205181.5|long intergenic non-protein coding RNA 654
hg19_v2_chr10_+_23217006_23217018	1.29068	SOX3_SOX2	ENST00000376528.4|ARMC3|ENSG00000165309.9|armadillo repeat containing 3 	ENST00000447081.1|ARMC3|ENSG00000165309.9|armadillo repeat containing 3
hg19_v2_chr8_+_67405438_67405450	1.29027	SOX3_SOX2	ENST00000305454.3|C8orf46|ENSG00000169085.7|chromosome 8 open reading frame 46
hg19_v2_chr19_-_55691377_55691406	1.28975	SOX3_SOX2	ENST00000589172.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr2_-_208989225_208989255	1.28956	SOX3_SOX2	ENST00000264376.4|CRYGD|ENSG00000118231.4|crystallin, gamma D
hg19_v2_chr4_-_99578789_99578843	1.28946	SOX3_SOX2	ENST00000511651.1|TSPAN5|ENSG00000168785.3|tetraspanin 5 	ENST00000505184.1|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr19_-_44123734_44123796	1.28871	SOX3_SOX2	ENST00000598676.1|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr16_+_58497274_58497330	1.28671	SOX3_SOX2	ENST00000564207.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr12_+_126107042_126107042	1.28637	SOX3_SOX2	ENST00000535886.1|TMEM132B|ENSG00000139364.6|transmembrane protein 132B
hg19_v2_chr4_-_83483395_83483510	1.28608	SOX3_SOX2	ENST00000515780.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr10_-_123274693_123274769	1.28344	SOX3_SOX2	ENST00000429361.1|FGFR2|ENSG00000066468.16|fibroblast growth factor receptor 2
hg19_v2_chr11_-_111781454_111781513	1.282	SOX3_SOX2	ENST00000533280.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr12_-_11548496_11548505	1.27921	SOX3_SOX2	ENST00000389362.4|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000565533.1|PRB2|ENSG00000121335.10|proline-rich protein BstNI subfamily 2 	ENST00000546254.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr12_-_57634475_57634532	1.27881	SOX3_SOX2	ENST00000393825.1|NDUFA4L2|ENSG00000185633.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2
hg19_v2_chr12_+_80750652_80750652	1.27548	SOX3_SOX2	ENST00000550182.1|OTOGL|ENSG00000165899.6|otogelin-like
hg19_v2_chr11_-_84634447_84634470	1.27548	SOX3_SOX2	ENST00000532653.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr8_+_85618155_85618173	1.27227	SOX3_SOX2	ENST00000523850.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like 	ENST00000521376.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr3_-_142682178_142682178	1.27117	SOX3_SOX2	ENST00000340634.3|PAQR9|ENSG00000188582.4|progestin and adipoQ receptor family member IX
hg19_v2_chr6_+_80714332_80714551	1.27051	SOX3_SOX2	ENST00000502580.1|TTK|ENSG00000112742.5|TTK protein kinase 	ENST00000511260.1|TTK|ENSG00000112742.5|TTK protein kinase
hg19_v2_chr15_-_74659978_74660081	1.26961	SOX3_SOX2	ENST00000541301.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000416978.1|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1 	ENST00000268053.6|CYP11A1|ENSG00000140459.13|cytochrome P450, family 11, subfamily A, polypeptide 1
hg19_v2_chr3_+_113616317_113616364	1.26811	SOX3_SOX2	ENST00000440446.2|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C 	ENST00000488680.1|GRAMD1C|ENSG00000178075.15|GRAM domain containing 1C
hg19_v2_chr21_+_47268058_47268079	1.26554	SOX3_SOX2	ENST00000400310.1|PCBP3|ENSG00000183570.12|poly(rC) binding protein 3
hg19_v2_chr14_+_58862630_58862662	1.26412	SOX3_SOX2	ENST00000360945.2|TOMM20L|ENSG00000196860.3|translocase of outer mitochondrial membrane 20 homolog (yeast)-like
hg19_v2_chr5_+_170288856_170288920	1.25959	SOX3_SOX2	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr12_+_15475462_15475487	1.25927	SOX3_SOX2	ENST00000543886.1|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O 	ENST00000348962.2|PTPRO|ENSG00000151490.9|protein tyrosine phosphatase, receptor type, O
hg19_v2_chr11_-_62689046_62689279	1.25873	SOX3_SOX2	ENST00000306960.3|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1 	ENST00000543973.1|CHRM1|ENSG00000168539.3|cholinergic receptor, muscarinic 1
hg19_v2_chrX_-_67653291_67653369	1.2577	SOX3_SOX2	ENST00000540071.1|OPHN1|ENSG00000079482.11|oligophrenin 1
hg19_v2_chr3_+_19189946_19190079	1.25406	SOX3_SOX2	ENST00000328405.2|KCNH8|ENSG00000183960.4|potassium voltage-gated channel, subfamily H (eag-related), member 8
hg19_v2_chr1_+_11539204_11539295	1.25381	SOX3_SOX2	ENST00000294484.6|PTCHD2|ENSG00000204624.6|patched domain containing 2 	ENST00000389575.3|PTCHD2|ENSG00000204624.6|patched domain containing 2
hg19_v2_chr3_+_49977523_49977540	1.25212	SOX3_SOX2	ENST00000422955.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr11_-_111781610_111781617	1.25134	SOX3_SOX2	ENST00000525823.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr13_-_38443860_38443939	1.25099	SOX3_SOX2	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chr14_-_103989033_103989176	1.25066	SOX3_SOX2	ENST00000553878.1|CKB|ENSG00000166165.8|creatine kinase, brain 	ENST00000557530.1|CKB|ENSG00000166165.8|creatine kinase, brain
hg19_v2_chr1_-_168106536_168106821	1.25009	SOX3_SOX2	ENST00000537209.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000361697.2|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000546300.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161 	ENST00000367835.1|GPR161|ENSG00000143147.10|G protein-coupled receptor 161
hg19_v2_chr12_+_53443680_53443858	1.2492	SOX3_SOX2	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr4_+_95972822_95972844	1.24865	SOX3_SOX2	ENST00000509540.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB 	ENST00000440890.2|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr22_+_30792846_30792978	1.2485	SOX3_SOX2	ENST00000312932.9|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000428195.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr4_+_128703295_128703496	1.24849	SOX3_SOX2	ENST00000296464.4|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like 	ENST00000508549.1|HSPA4L|ENSG00000164070.7|heat shock 70kDa protein 4-like
hg19_v2_chr3_+_35721106_35721127	1.24792	SOX3_SOX2	ENST00000474696.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000412048.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000396482.2|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000432682.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr15_-_56035177_56035355	1.2478	SOX3_SOX2	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr1_+_169079823_169079836	1.24574	SOX3_SOX2	ENST00000367813.3|ATP1B1|ENSG00000143153.8|ATPase, Na+/K+ transporting, beta 1 polypeptide
hg19_v2_chr4_+_95917383_95917421	1.23774	SOX3_SOX2	ENST00000512312.1|BMPR1B|ENSG00000138696.6|bone morphogenetic protein receptor, type IB
hg19_v2_chr1_+_109419596_109419640	1.23688	SOX3_SOX2	ENST00000435987.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2 	ENST00000264126.3|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr19_+_36266417_36266427	1.23563	SOX3_SOX2	ENST00000378944.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33 	ENST00000007510.4|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr8_+_12803146_12803155	1.23494	SOX3_SOX2	ENST00000447063.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr9_-_140142222_140142229	1.23383	SOX3_SOX2	ENST00000344774.4|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A 	ENST00000388932.2|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr16_+_58498177_58498193	1.23342	SOX3_SOX2	ENST00000567454.1|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr2_+_172949468_172949522	1.23153	SOX3_SOX2	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr5_+_140705777_140705844	1.22956	SOX3_SOX2	ENST00000606901.1|AC005618.6|ENSG00000272070.1|AC005618.6	ENST00000606674.1|AC005618.6|ENSG00000272070.1|AC005618.6
hg19_v2_chr19_+_56905024_56905180	1.22678	SOX3_SOX2	ENST00000591172.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000589888.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000587979.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000585659.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head) 	ENST00000593109.1|ZNF582-AS1|ENSG00000267454.1|ZNF582 antisense RNA 1 (head to head)
hg19_v2_chr3_+_159557637_159557650	1.22458	SOX3_SOX2	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr13_-_27334879_27334930	1.22421	SOX3_SOX2	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr15_+_59665194_59665232	1.22265	SOX3_SOX2	ENST00000560394.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr12_+_49121213_49121228	1.22167	SOX3_SOX2	ENST00000548380.1|LINC00935|ENSG00000257987.1|long intergenic non-protein coding RNA 935
hg19_v2_chr1_-_114695537_114695602	1.22058	SOX3_SOX2	ENST00000609117.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608879.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000608203.1|SYT6|ENSG00000134207.10|synaptotagmin VI 	ENST00000609577.1|SYT6|ENSG00000134207.10|synaptotagmin VI
hg19_v2_chrX_+_140968160_140968160	1.2194	SOX3_SOX2	ENST00000448920.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chr2_+_202937972_202937988	1.21906	SOX3_SOX2	ENST00000541917.1|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012  	ENST00000295844.3|AC079354.1|ENSG00000182329.6|uncharacterized protein KIAA2012
hg19_v2_chr19_-_38714847_38714890	1.21759	SOX3_SOX2	ENST00000420980.2|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1 	ENST00000355526.4|DPF1|ENSG00000011332.15|D4, zinc and double PHD fingers family 1
hg19_v2_chr21_-_27423339_27423352	1.21496	SOX3_SOX2	ENST00000415997.1|APP|ENSG00000142192.16|amyloid beta (A4) precursor protein
hg19_v2_chr5_+_140571902_140571967	1.21249	SOX3_SOX2	ENST00000239446.4|PCDHB10|ENSG00000120324.4|protocadherin beta 10
hg19_v2_chr19_+_23299777_23299844	1.21243	SOX3_SOX2	ENST00000597761.2|ZNF730|ENSG00000183850.9|zinc finger protein 730
hg19_v2_chr3_+_49977490_49977522	1.21112	SOX3_SOX2	ENST00000539992.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr11_-_117747434_117747453	1.20844	SOX3_SOX2	ENST00000529335.2|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000530956.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000260282.4|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6
hg19_v2_chr11_-_76155618_76155676	1.20498	SOX3_SOX2	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr3_+_44626359_44626387	1.20287	SOX3_SOX2	ENST00000412641.1|ZNF197|ENSG00000186448.10|zinc finger protein 197
hg19_v2_chr17_-_27277615_27277700	1.20099	SOX3_SOX2	ENST00000583747.1|PHF12|ENSG00000109118.9|PHD finger protein 12 	ENST00000584236.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr2_-_80531399_80531566	1.19771	SOX3_SOX2	ENST00000409148.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000415098.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1 	ENST00000452811.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr8_-_72274095_72274116	1.1967	SOX3_SOX2	ENST00000303824.7|EYA1|ENSG00000104313.13|eyes absent homolog 1 (Drosophila)
hg19_v2_chr13_-_51417812_51417846	1.19653	SOX3_SOX2	ENST00000504404.1|DLEU7|ENSG00000186047.9|deleted in lymphocytic leukemia, 7
hg19_v2_chr2_-_224467002_224467085	1.19524	SOX3_SOX2	ENST00000421386.1|SCG2|ENSG00000171951.4|secretogranin II 	ENST00000433889.1|SCG2|ENSG00000171951.4|secretogranin II
hg19_v2_chr1_+_68150744_68150890	1.19195	SOX3_SOX2	ENST00000370986.4|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha 	ENST00000370985.3|GADD45A|ENSG00000116717.7|growth arrest and DNA-damage-inducible, alpha
hg19_v2_chr11_-_111781554_111781584	1.18972	SOX3_SOX2	ENST00000526167.1|CRYAB|ENSG00000109846.3|crystallin, alpha B 	ENST00000528961.1|CRYAB|ENSG00000109846.3|crystallin, alpha B
hg19_v2_chr5_-_11903475_11903512	1.18932	SOX3_SOX2	ENST00000508761.1|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2
hg19_v2_chr17_+_15603447_15603447	1.18927	SOX3_SOX2	ENST00000395893.2|ZNF286A|ENSG00000187607.11|Homo sapiens zinc finger protein 286A (ZNF286A), transcript variant 6, mRNA.
hg19_v2_chr12_-_99548524_99548550	1.18187	SOX3_SOX2	ENST00000549558.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000550693.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B 	ENST00000549493.2|ANKS1B|ENSG00000185046.14|ankyrin repeat and sterile alpha motif domain containing 1B
hg19_v2_chr1_-_46598371_46598708	1.1769	SOX3_SOX2	ENST00000372006.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000425892.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000420542.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000354242.4|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000340332.6|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr22_+_38382163_38382206	1.17374	SOX3_SOX2	ENST00000333418.4|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F 	ENST00000427034.1|POLR2F|ENSG00000100142.10|polymerase (RNA) II (DNA directed) polypeptide F
hg19_v2_chr8_-_112039621_112039629	1.17036	SOX3_SOX2	ENST00000523557.1|RP11-946L20.2|ENSG00000253877.1|RP11-946L20.2
hg19_v2_chr4_+_175839506_175839512	1.16982	SOX3_SOX2	ENST00000505141.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000359240.3|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000445694.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr19_-_18717627_18717660	1.16899	SOX3_SOX2	ENST00000392386.3|CRLF1|ENSG00000006016.6|cytokine receptor-like factor 1
hg19_v2_chr16_-_65106110_65106163	1.16564	SOX3_SOX2	ENST00000562882.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000567934.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chr1_-_112046110_112046228	1.16547	SOX3_SOX2	ENST00000369716.4|ADORA3|ENSG00000121933.13|adenosine A3 receptor
hg19_v2_chr8_-_60031762_60031803	1.16438	SOX3_SOX2	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr4_-_113437328_113437337	1.16422	SOX3_SOX2	ENST00000313341.3|NEUROG2|ENSG00000178403.3|neurogenin 2
hg19_v2_chr17_+_31254892_31254955	1.16405	SOX3_SOX2	ENST00000394642.3|TMEM98|ENSG00000006042.7|transmembrane protein 98 	ENST00000579849.1|TMEM98|ENSG00000006042.7|transmembrane protein 98
hg19_v2_chrX_+_36053908_36053908	1.16316	SOX3_SOX2	ENST00000378660.2|CHDC2|ENSG00000176034.8|calponin homology domain containing 2
hg19_v2_chr5_+_96840389_96840421	1.16146	SOX3_SOX2	ENST00000504012.1|RP11-1E3.1|ENSG00000250331.1|RP11-1E3.1
hg19_v2_chr5_-_156593273_156593276	1.15999	SOX3_SOX2	ENST00000302938.4|FAM71B|ENSG00000170613.4|family with sequence similarity 71, member B
hg19_v2_chr1_-_116383738_116383752	1.15967	SOX3_SOX2	ENST00000320238.3|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chr19_+_51815102_51815102	1.15953	SOX3_SOX2	ENST00000270642.8|IGLON5|ENSG00000142549.9|IgLON family member 5
hg19_v2_chr7_-_35840198_35840245	1.15852	SOX3_SOX2	ENST00000412856.1|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000437235.3|AC007551.3|ENSG00000228878.3|AC007551.3	ENST00000424194.1|AC007551.3|ENSG00000228878.3|AC007551.3
hg19_v2_chr15_+_74165945_74165987	1.1541	SOX3_SOX2	ENST00000535547.2|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21 	ENST00000300504.2|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21 	ENST00000562056.1|TBC1D21|ENSG00000167139.4|TBC1 domain family, member 21
hg19_v2_chr1_+_59522284_59522317	1.15113	SOX3_SOX2	ENST00000449812.2|RP11-145M4.3|ENSG00000237352.2|RP11-145M4.3
hg19_v2_chr6_-_46459099_46459132	1.14941	SOX3_SOX2	ENST00000371374.1|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr19_-_19626838_19626991	1.14873	SOX3_SOX2	ENST00000360913.3|TSSK6|ENSG00000178093.12|testis-specific serine kinase 6
hg19_v2_chr17_+_54230819_54230871	1.14788	SOX3_SOX2	ENST00000318698.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1 	ENST00000566473.2|ANKFN1|ENSG00000153930.6|ankyrin-repeat and fibronectin type III domain containing 1
hg19_v2_chr11_-_18062335_18062335	1.14538	SOX3_SOX2	ENST00000341556.2|TPH1|ENSG00000129167.5|tryptophan hydroxylase 1
hg19_v2_chr1_+_178482212_178482255	1.14504	SOX3_SOX2	ENST00000319416.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000258298.2|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367643.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367642.3|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr17_-_79359046_79359058	1.14441	SOX3_SOX2	ENST00000574041.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr1_+_39571026_39571117	1.14324	SOX3_SOX2	ENST00000524432.1|MACF1|ENSG00000127603.19|microtubule-actin crosslinking factor 1
hg19_v2_chr5_-_115872124_115872139	1.1414	SOX3_SOX2	ENST00000515009.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr11_-_83393303_83393342	1.14002	SOX3_SOX2	ENST00000398304.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila) 	ENST00000420775.2|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr19_-_10047219_10047235	1.13909	SOX3_SOX2	ENST00000264833.4|OLFM2|ENSG00000105088.4|olfactomedin 2
hg19_v2_chr14_-_80697396_80697402	1.13887	SOX3_SOX2	ENST00000557010.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr7_+_99775366_99775518	1.13774	SOX3_SOX2	ENST00000394018.2|STAG3|ENSG00000066923.13|stromal antigen 3 	ENST00000416412.1|STAG3|ENSG00000066923.13|stromal antigen 3
hg19_v2_chrX_+_135579670_135579715	1.1372	SOX3_SOX2	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr4_+_71570430_71570536	1.13535	SOX3_SOX2	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr6_+_46620676_46620696	1.13424	SOX3_SOX2	ENST00000371347.5|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27 	ENST00000411689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr19_+_4279282_4279293	1.13351	SOX3_SOX2	ENST00000599689.1|SHD|ENSG00000105251.6|Src homology 2 domain containing transforming protein D
hg19_v2_chr17_-_79358929_79358954	1.13128	SOX3_SOX2	ENST00000570301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr3_+_155755482_155755494	1.13018	SOX3_SOX2	ENST00000472028.1|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr21_-_40685536_40685591	1.12882	SOX3_SOX2	ENST00000341322.4|BRWD1|ENSG00000185658.9|bromodomain and WD repeat domain containing 1
hg19_v2_chrX_+_51928002_51928017	1.12676	SOX3_SOX2	ENST00000375626.3|MAGED4|ENSG00000154545.12|melanoma antigen family D, 4
hg19_v2_chr15_-_88799384_88799430	1.12649	SOX3_SOX2	ENST00000540489.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000557856.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000558676.1|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr4_+_41983713_41983798	1.12637	SOX3_SOX2	ENST00000333141.5|DCAF4L1|ENSG00000182308.5|DDB1 and CUL4 associated factor 4-like 1
hg19_v2_chr17_-_79359021_79359029	1.12506	SOX3_SOX2	ENST00000572301.1|RP11-1055B8.3|ENSG00000262223.2|RP11-1055B8.3
hg19_v2_chr19_-_38743878_38743928	1.11547	SOX3_SOX2	ENST00000587515.1|PPP1R14A|ENSG00000167641.6|protein phosphatase 1, regulatory (inhibitor) subunit 14A
hg19_v2_chr8_+_104384616_104384661	1.11441	SOX3_SOX2	ENST00000520337.1|CTHRC1|ENSG00000164932.8|collagen triple helix repeat containing 1
hg19_v2_chr19_-_22379753_22379753	1.11385	SOX3_SOX2	ENST00000397121.2|ZNF676|ENSG00000196109.6|zinc finger protein 676
hg19_v2_chr7_-_107443652_107443675	1.11273	SOX3_SOX2	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr6_-_161695074_161695112	1.11126	SOX3_SOX2	ENST00000457520.2|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000366906.5|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4 	ENST00000320285.4|AGPAT4|ENSG00000026652.9|1-acylglycerol-3-phosphate O-acyltransferase 4
hg19_v2_chr2_-_166060552_166060566	1.11094	SOX3_SOX2	ENST00000283254.7|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit 	ENST00000453007.1|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr5_+_140753444_140753651	1.11016	SOX3_SOX2	ENST00000517434.1|PCDHGA6|ENSG00000253731.1|protocadherin gamma subfamily A, 6
hg19_v2_chr10_-_25012597_25012732	1.10933	SOX3_SOX2	ENST00000396432.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr16_+_6533729_6533796	1.10932	SOX3_SOX2	ENST00000551752.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr12_-_109458820_109458845	1.10932	SOX3_SOX2	ENST00000550490.1|SVOP|ENSG00000166111.5|SV2 related protein homolog (rat)
hg19_v2_chr6_-_36410620_36410666	1.10882	SOX3_SOX2	ENST00000454782.2|PXT1|ENSG00000179165.9|peroxisomal, testis specific 1
hg19_v2_chr2_+_166326157_166326216	1.10836	SOX3_SOX2	ENST00000421875.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000314499.7|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3 	ENST00000409664.1|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr2_-_209028300_209028316	1.10742	SOX3_SOX2	ENST00000304502.4|CRYGA|ENSG00000168582.4|crystallin, gamma A
hg19_v2_chr9_-_73483926_73483945	1.10616	SOX3_SOX2	ENST00000396283.1|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3 	ENST00000361823.5|TRPM3|ENSG00000083067.18|transient receptor potential cation channel, subfamily M, member 3
hg19_v2_chr3_-_149688896_149688970	1.10601	SOX3_SOX2	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr15_-_83876758_83876770	1.10348	SOX3_SOX2	ENST00000299633.4|HDGFRP3|ENSG00000166503.4|Hepatoma-derived growth factor-related protein 3
hg19_v2_chr5_+_121465207_121465216	1.09954	SOX3_SOX2	ENST00000296600.4|ZNF474|ENSG00000164185.4|zinc finger protein 474
hg19_v2_chr11_+_118478313_118478358	1.09909	SOX3_SOX2	ENST00000356063.5|PHLDB1|ENSG00000019144.12|pleckstrin homology-like domain, family B, member 1
hg19_v2_chr16_-_52640834_52640847	1.09899	SOX3_SOX2	ENST00000510238.3|CASC16|ENSG00000249231.3|cancer susceptibility candidate 16 (non-protein coding)
hg19_v2_chr5_+_140557371_140557371	1.09625	SOX3_SOX2	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr12_+_19358228_19358259	1.09575	SOX3_SOX2	ENST00000424268.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5 	ENST00000543806.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr6_+_123100853_123100904	1.09473	SOX3_SOX2	ENST00000356535.4|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr10_-_69991865_69991871	1.09463	SOX3_SOX2	ENST00000373673.3|ATOH7|ENSG00000179774.7|atonal homolog 7 (Drosophila)
hg19_v2_chr5_+_36606700_36606729	1.09293	SOX3_SOX2	ENST00000416645.2|SLC1A3|ENSG00000079215.9|solute carrier family 1 (glial high affinity glutamate transporter), member 3
hg19_v2_chr19_+_13135439_13135446	1.0924	SOX3_SOX2	ENST00000586873.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor)
hg19_v2_chr4_+_71587669_71587752	1.09029	SOX3_SOX2	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr19_+_32836499_32836625	1.0885	SOX3_SOX2	ENST00000311921.4|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000544431.1|ZNF507|ENSG00000168813.12|zinc finger protein 507 	ENST00000355898.5|ZNF507|ENSG00000168813.12|zinc finger protein 507
hg19_v2_chr19_+_36266433_36266490	1.08719	SOX3_SOX2	ENST00000314737.5|ARHGAP33|ENSG00000004777.14|Rho GTPase activating protein 33
hg19_v2_chr5_+_55033872_55033943	1.08463	SOX3_SOX2	ENST00000515709.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000506848.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 	ENST00000514679.1|DDX4|ENSG00000152670.14|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
hg19_v2_chr21_+_17442799_17442853	1.08246	SOX3_SOX2	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr22_+_30792980_30793047	1.08176	SOX3_SOX2	ENST00000403484.1|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000405717.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae) 	ENST00000402592.3|SEC14L2|ENSG00000100003.13|SEC14-like 2 (S. cerevisiae)
hg19_v2_chr18_+_11751466_11751475	1.07784	SOX3_SOX2	ENST00000535121.1|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr18_-_5419797_5419829	1.07742	SOX3_SOX2	ENST00000542146.1|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3 	ENST00000427684.2|EPB41L3|ENSG00000082397.11|erythrocyte membrane protein band 4.1-like 3
hg19_v2_chr8_-_27469196_27469294	1.07563	SOX3_SOX2	ENST00000546343.1|CLU|ENSG00000120885.15|clusterin 	ENST00000560566.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr2_-_107503558_107503580	1.07529	SOX3_SOX2	ENST00000361686.4|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 	ENST00000409087.3|ST6GAL2|ENSG00000144057.11|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2
hg19_v2_chr11_-_125366018_125366076	1.07428	SOX3_SOX2	ENST00000527534.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chrX_+_80457442_80457501	1.06957	SOX3_SOX2	ENST00000373212.5|SH3BGRL|ENSG00000131171.8|SH3 domain binding glutamic acid-rich protein like
hg19_v2_chr11_+_46402583_46402669	1.0681	SOX3_SOX2	ENST00000359803.3|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr19_+_1269324_1269350	1.06741	SOX3_SOX2	ENST00000589710.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000588230.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000413636.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000586472.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589686.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000444172.2|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587323.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000320936.5|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000587896.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000589235.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein 	ENST00000591659.1|CIRBP|ENSG00000099622.9|cold inducible RNA binding protein
hg19_v2_chr17_-_18585131_18585171	1.06699	SOX3_SOX2	ENST00000443457.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000583002.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chrX_-_110654147_110654194	1.06654	SOX3_SOX2	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr6_-_119031228_119031261	1.0665	SOX3_SOX2	ENST00000392500.3|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like 	ENST00000368488.5|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like 	ENST00000434604.1|CEP85L|ENSG00000111860.9|centrosomal protein 85kDa-like
hg19_v2_chr7_+_29234101_29234130	1.06412	SOX3_SOX2	ENST00000435288.2|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr20_+_33292507_33292569	1.06361	SOX3_SOX2	ENST00000414082.1|TP53INP2|ENSG00000078804.8|tumor protein p53 inducible nuclear protein 2
hg19_v2_chrX_+_102469997_102470094	1.06287	SOX3_SOX2	ENST00000372695.5|BEX4|ENSG00000102409.9|brain expressed, X-linked 4 	ENST00000372691.3|BEX4|ENSG00000102409.9|brain expressed, X-linked 4
hg19_v2_chr1_+_178482262_178482279	1.06242	SOX3_SOX2	ENST00000367641.3|TEX35|ENSG00000240021.5|testis expressed 35 	ENST00000367639.1|TEX35|ENSG00000240021.5|testis expressed 35
hg19_v2_chr10_+_72972281_72972336	1.06234	SOX3_SOX2	ENST00000335350.6|UNC5B|ENSG00000107731.8|unc-5 homolog B (C. elegans)
hg19_v2_chr5_-_65018834_65018863	1.06199	SOX3_SOX2	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr19_+_1491144_1491223	1.06112	SOX3_SOX2	ENST00000233596.3|REEP6|ENSG00000115255.6|receptor accessory protein 6
hg19_v2_chr12_+_19358192_19358212	1.06032	SOX3_SOX2	ENST00000538305.1|PLEKHA5|ENSG00000052126.10|pleckstrin homology domain containing, family A member 5
hg19_v2_chr6_-_137366096_137366111	1.05705	SOX3_SOX2	ENST00000316649.5|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha 	ENST00000367746.3|IL20RA|ENSG00000016402.8|interleukin 20 receptor, alpha
hg19_v2_chr5_-_131347583_131347870	1.05504	SOX3_SOX2	ENST00000379255.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000430403.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000544770.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000379246.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000414078.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6 	ENST00000441995.1|ACSL6|ENSG00000164398.8|acyl-CoA synthetase long-chain family member 6
hg19_v2_chr12_+_56477093_56477110	1.055	SOX3_SOX2	ENST00000549672.1|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 	ENST00000415288.2|ERBB3|ENSG00000065361.10|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3
hg19_v2_chr12_+_8850277_8850313	1.05398	SOX3_SOX2	ENST00000539923.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B 	ENST00000537189.1|RIMKLB|ENSG00000166532.11|ribosomal modification protein rimK-like family member B
hg19_v2_chr20_+_55205825_55205938	1.05377	SOX3_SOX2	ENST00000544508.1|TFAP2C|ENSG00000087510.5|transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma)
hg19_v2_chr2_-_183106641_183106754	1.05245	SOX3_SOX2	ENST00000346717.4|PDE1A|ENSG00000115252.14|phosphodiesterase 1A, calmodulin-dependent
hg19_v2_chr3_-_56950407_56950499	1.05233	SOX3_SOX2	ENST00000496106.1|ARHGEF3|ENSG00000163947.7|Rho guanine nucleotide exchange factor (GEF) 3
hg19_v2_chr7_-_17500294_17500304	1.04993	SOX3_SOX2	ENST00000439046.1|AC019117.2|ENSG00000236039.1|AC019117.2
hg19_v2_chr9_-_115774453_115774507	1.04923	SOX3_SOX2	ENST00000427548.1|ZNF883|ENSG00000228623.2|zinc finger protein 883
hg19_v2_chr10_-_61122934_61122940	1.04764	SOX3_SOX2	ENST00000512919.1|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr6_+_146350267_146350419	1.04703	SOX3_SOX2	ENST00000355289.4|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1 	ENST00000282753.1|GRM1|ENSG00000152822.9|glutamate receptor, metabotropic 1
hg19_v2_chr8_-_112039643_112039668	1.04675	SOX3_SOX2	ENST00000524283.1|RP11-946L20.2|ENSG00000253877.1|RP11-946L20.2
hg19_v2_chr5_+_140787600_140787770	1.04581	SOX3_SOX2	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr17_+_47074758_47074787	1.04408	SOX3_SOX2	ENST00000290341.3|IGF2BP1|ENSG00000159217.5|insulin-like growth factor 2 mRNA binding protein 1
hg19_v2_chr1_+_154193643_154193804	1.04238	SOX3_SOX2	ENST00000456325.1|UBAP2L|ENSG00000143569.14|ubiquitin associated protein 2-like
hg19_v2_chr2_-_86564740_86564756	1.04227	SOX3_SOX2	ENST00000540790.1|REEP1|ENSG00000068615.12|receptor accessory protein 1 	ENST00000428491.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr5_-_115872142_115872154	1.04203	SOX3_SOX2	ENST00000510263.1|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr15_+_63050785_63050810	1.04193	SOX3_SOX2	ENST00000472902.1|TLN2|ENSG00000171914.10|talin 2
hg19_v2_chr20_-_44176391_44176402	1.03877	SOX3_SOX2	ENST00000409554.1|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor
hg19_v2_chr11_-_123525648_123525714	1.0372	SOX3_SOX2	ENST00000527836.1|SCN3B|ENSG00000166257.4|sodium channel, voltage-gated, type III, beta subunit
hg19_v2_chr19_+_52839490_52839508	1.03717	SOX3_SOX2	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr13_-_60737898_60737910	1.03654	SOX3_SOX2	ENST00000377908.2|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400319.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000400320.1|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3 	ENST00000267215.4|DIAPH3|ENSG00000139734.13|diaphanous-related formin 3
hg19_v2_chr8_+_104831554_104831615	1.03612	SOX3_SOX2	ENST00000408894.2|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chrX_-_114252193_114252207	1.03595	SOX3_SOX2	ENST00000243213.1|IL13RA2|ENSG00000123496.3|interleukin 13 receptor, alpha 2
hg19_v2_chr1_+_47489240_47489254	1.03543	SOX3_SOX2	ENST00000371901.3|CYP4X1|ENSG00000186377.6|cytochrome P450, family 4, subfamily X, polypeptide 1
hg19_v2_chr2_+_236578248_236578264	1.03485	SOX3_SOX2	ENST00000409538.1|AGAP1|ENSG00000157985.13|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
hg19_v2_chrX_+_38420783_38420805	1.0335	SOX3_SOX2	ENST00000422612.2|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000286824.6|TSPAN7|ENSG00000156298.8|tetraspanin 7 	ENST00000545599.1|TSPAN7|ENSG00000156298.8|tetraspanin 7
hg19_v2_chr5_-_11903337_11903377	1.03303	SOX3_SOX2	ENST00000502551.1|CTNND2|ENSG00000169862.14|catenin (cadherin-associated protein), delta 2
hg19_v2_chr11_-_11643540_11643566	1.03192	SOX3_SOX2	ENST00000227756.4|GALNT18|ENSG00000110328.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
hg19_v2_chr5_+_111964133_111964297	1.0318	SOX3_SOX2	ENST00000508879.1|RP11-159K7.2|ENSG00000250358.1|RP11-159K7.2	ENST00000507565.1|RP11-159K7.2|ENSG00000250358.1|RP11-159K7.2
hg19_v2_chr2_-_70995307_70995344	1.03001	SOX3_SOX2	ENST00000264436.4|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000355733.3|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000447731.2|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000430656.1|ADD2|ENSG00000075340.18|adducin 2 (beta) 	ENST00000413157.2|ADD2|ENSG00000075340.18|adducin 2 (beta)
hg19_v2_chr19_+_1450112_1450187	1.02913	SOX3_SOX2	ENST00000590469.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000233607.2|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000238483.4|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2 	ENST00000590877.1|APC2|ENSG00000115266.7|adenomatosis polyposis coli 2
hg19_v2_chr1_+_159175201_159175264	1.02748	SOX3_SOX2	ENST00000368121.2|DARC|ENSG00000213088.5|Duffy blood group, atypical chemokine receptor
hg19_v2_chr14_+_93799556_93799577	1.02661	SOX3_SOX2	ENST00000256339.4|UNC79|ENSG00000133958.9|unc-79 homolog (C. elegans)
hg19_v2_chr3_+_125694347_125694467	1.02582	SOX3_SOX2	ENST00000505382.1|ROPN1B|ENSG00000114547.5|rhophilin associated tail protein 1B 	ENST00000511082.1|ROPN1B|ENSG00000114547.5|rhophilin associated tail protein 1B
hg19_v2_chr3_+_159570722_159570733	1.025	SOX3_SOX2	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chrX_+_47863734_47863734	1.02398	SOX3_SOX2	ENST00000304355.5|SPACA5|ENSG00000171489.6|sperm acrosome associated 5
hg19_v2_chr10_+_115999004_115999019	1.02231	SOX3_SOX2	ENST00000603594.1|VWA2|ENSG00000165816.8|von Willebrand factor A domain containing 2
hg19_v2_chr1_+_25071848_25071944	1.02067	SOX3_SOX2	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr6_+_126240442_126240459	1.02024	SOX3_SOX2	ENST00000448104.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000438495.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7 	ENST00000444128.1|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr12_-_81763127_81763171	1.01949	SOX3_SOX2	ENST00000541017.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr2_+_179316163_179316163	1.0188	SOX3_SOX2	ENST00000409117.3|DFNB59|ENSG00000204311.7|deafness, autosomal recessive 59
hg19_v2_chr8_-_21669826_21669869	1.0165	SOX3_SOX2	ENST00000517328.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr8_+_73449625_73449668	1.01438	SOX3_SOX2	ENST00000523207.1|KCNB2|ENSG00000182674.5|potassium voltage-gated channel, Shab-related subfamily, member 2
hg19_v2_chr18_+_11751493_11751507	1.01211	SOX3_SOX2	ENST00000269162.5|GNAL|ENSG00000141404.11|guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
hg19_v2_chr12_+_32260085_32260268	1.0099	SOX3_SOX2	ENST00000548411.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000281474.5|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila) 	ENST00000551086.1|BICD1|ENSG00000151746.9|bicaudal D homolog 1 (Drosophila)
hg19_v2_chr4_+_55524085_55524110	1.00689	SOX3_SOX2	ENST00000412167.2|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 	ENST00000288135.5|KIT|ENSG00000157404.11|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog
hg19_v2_chr17_+_44803922_44803922	1.00524	SOX3_SOX2	ENST00000465370.1|NSF|ENSG00000073969.14|N-ethylmaleimide-sensitive factor
hg19_v2_chr6_+_42981922_42982047	1.00325	SOX3_SOX2	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr1_+_149239529_149239531	1.00157	SOX3_SOX2	ENST00000457216.2|RP11-403I13.4|ENSG00000223779.4|RP11-403I13.4
hg19_v2_chr16_+_88636875_88636886	1.00113	SOX3_SOX2	ENST00000569435.1|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr9_-_127269488_127269514	1.00104	SOX3_SOX2	ENST00000455734.1|NR5A1|ENSG00000136931.5|nuclear receptor subfamily 5, group A, member 1
hg19_v2_chr9_-_139658965_139658975	1.00031	SOX3_SOX2	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chr6_+_35704804_35704813	0.99849	SOX3_SOX2	ENST00000373869.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr9_-_125330838_125330838	0.998209	SOX3_SOX2	ENST00000304865.2|OR1L8|ENSG00000171496.2|olfactory receptor, family 1, subfamily L, member 8
hg19_v2_chr5_+_125800836_125800850	0.997547	SOX3_SOX2	ENST00000511134.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr19_+_56989485_56989565	0.997096	SOX3_SOX2	ENST00000585445.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000586091.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000594783.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000592146.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000588158.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000299997.4|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head) 	ENST00000591797.1|ZNF667-AS1|ENSG00000166770.6|ZNF667 antisense RNA 1 (head to head)
hg19_v2_chr1_-_37499726_37499850	0.9969	SOX3_SOX2	ENST00000373091.3|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3 	ENST00000373093.4|GRIK3|ENSG00000163873.5|glutamate receptor, ionotropic, kainate 3
hg19_v2_chrX_+_55744166_55744222	0.996781	SOX3_SOX2	ENST00000374941.4|RRAGB|ENSG00000083750.8|Ras-related GTP binding B 	ENST00000414239.1|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr8_+_94929969_94929980	0.996267	SOX3_SOX2	ENST00000517764.1|PDP1|ENSG00000164951.11|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg19_v2_chr9_+_109694914_109694927	0.995514	SOX3_SOX2	ENST00000542028.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr12_-_45269769_45269799	0.994427	SOX3_SOX2	ENST00000548826.1|NELL2|ENSG00000184613.6|NEL-like 2 (chicken)
hg19_v2_chr20_+_44036900_44036984	0.993093	SOX3_SOX2	ENST00000443296.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr2_-_80531720_80531740	0.992625	SOX3_SOX2	ENST00000416268.1|LRRTM1|ENSG00000162951.6|leucine rich repeat transmembrane neuronal 1
hg19_v2_chr5_+_140743859_140743898	0.989226	SOX3_SOX2	ENST00000518069.1|PCDHGA5|ENSG00000253485.1|protocadherin gamma subfamily A, 5
hg19_v2_chr19_-_55691614_55691809	0.986151	SOX3_SOX2	ENST00000592470.1|SYT5|ENSG00000129990.10|synaptotagmin V 	ENST00000354308.3|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr15_+_33603147_33603187	0.985281	SOX3_SOX2	ENST00000415757.3|RYR3|ENSG00000198838.7|ryanodine receptor 3 	ENST00000389232.4|RYR3|ENSG00000198838.7|ryanodine receptor 3
hg19_v2_chr18_-_64271316_64271334	0.984594	SOX3_SOX2	ENST00000540086.1|CDH19|ENSG00000071991.4|cadherin 19, type 2 	ENST00000580157.1|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr4_-_83483360_83483386	0.982944	SOX3_SOX2	ENST00000449862.2|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr8_-_27468945_27468948	0.98282	SOX3_SOX2	ENST00000405140.3|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr7_+_30960915_30961105	0.982435	SOX3_SOX2	ENST00000441328.2|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409899.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group) 	ENST00000409611.1|AQP1|ENSG00000240583.6|aquaporin 1 (Colton blood group)
hg19_v2_chr6_+_22146851_22146883	0.980522	SOX3_SOX2	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr12_+_49212261_49212319	0.980195	SOX3_SOX2	ENST00000547818.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit 	ENST00000547392.1|CACNB3|ENSG00000167535.3|calcium channel, voltage-dependent, beta 3 subunit
hg19_v2_chr6_+_35704855_35704874	0.979132	SOX3_SOX2	ENST00000288065.2|ARMC12|ENSG00000157343.4|armadillo repeat containing 12 	ENST00000373866.3|ARMC12|ENSG00000157343.4|armadillo repeat containing 12
hg19_v2_chr20_+_62795827_62795878	0.978962	SOX3_SOX2	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr22_+_17602467_17602489	0.976498	SOX3_SOX2	ENST00000441544.1|AC006946.15|ENSG00000235478.1|Uncharacterized protein
hg19_v2_chr15_-_88799661_88799755	0.974995	SOX3_SOX2	ENST00000360948.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000357724.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000355254.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3 	ENST00000317501.3|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr17_-_55822653_55822673	0.973514	SOX3_SOX2	ENST00000299415.2|AC007431.1|ENSG00000166329.2|coiled-coil domain containing 182
hg19_v2_chr20_-_44007014_44007033	0.972941	SOX3_SOX2	ENST00000372726.3|TP53TG5|ENSG00000124251.6|TP53 target 5 	ENST00000537995.1|TP53TG5|ENSG00000124251.6|TP53 target 5
hg19_v2_chr12_+_80750134_80750134	0.972161	SOX3_SOX2	ENST00000546620.1|OTOGL|ENSG00000165899.6|otogelin-like
hg19_v2_chr3_+_94657016_94657061	0.970898	SOX3_SOX2	ENST00000462219.1|LINC00879|ENSG00000239589.1|long intergenic non-protein coding RNA 879
hg19_v2_chr12_-_16761007_16761080	0.967516	SOX3_SOX2	ENST00000354662.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2) 	ENST00000441439.2|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chrX_+_102631844_102632109	0.965428	SOX3_SOX2	ENST00000372634.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000299872.7|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr14_-_21056121_21056206	0.961086	SOX3_SOX2	ENST00000557105.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398008.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000555841.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000443456.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000432835.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000557503.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000398009.2|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active) 	ENST00000554842.1|RNASE11|ENSG00000173464.10|ribonuclease, RNase A family, 11 (non-active)
hg19_v2_chrX_-_63005405_63005440	0.960164	SOX3_SOX2	ENST00000374878.1|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9 	ENST00000437457.2|ARHGEF9|ENSG00000131089.9|Cdc42 guanine nucleotide exchange factor (GEF) 9
hg19_v2_chr5_-_157079372_157079395	0.959535	SOX3_SOX2	ENST00000311371.5|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr11_-_84634217_84634229	0.956642	SOX3_SOX2	ENST00000524982.1|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr15_+_69373210_69373239	0.955981	SOX3_SOX2	ENST00000435479.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000559870.1|RP11-809H16.5|ENSG00000259222.1|RP11-809H16.5
hg19_v2_chr13_+_43355732_43355757	0.955839	SOX3_SOX2	ENST00000313851.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr9_+_130026756_130026871	0.954786	SOX3_SOX2	ENST00000314904.5|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3 	ENST00000373387.4|GARNL3|ENSG00000136895.14|GTPase activating Rap/RanGAP domain-like 3
hg19_v2_chr21_+_43442100_43442192	0.9531	SOX3_SOX2	ENST00000455701.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1 	ENST00000596595.1|ZNF295-AS1|ENSG00000237232.3|ZNF295 antisense RNA 1
hg19_v2_chr7_+_69064566_69064597	0.95229	SOX3_SOX2	ENST00000403018.2|AUTS2|ENSG00000158321.11|autism susceptibility candidate 2
hg19_v2_chr11_+_125034640_125034655	0.950662	SOX3_SOX2	ENST00000542175.1|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr1_-_117210290_117210376	0.9464	SOX3_SOX2	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chr20_-_44176013_44176045	0.944527	SOX3_SOX2	ENST00000555685.1|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor
hg19_v2_chr11_-_47207390_47207432	0.938877	SOX3_SOX2	ENST00000539589.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3 	ENST00000528462.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr6_+_13925170_13925234	0.938668	SOX3_SOX2	ENST00000471906.1|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr16_-_4987065_4987156	0.938622	SOX3_SOX2	ENST00000590782.2|PPL|ENSG00000118898.11|periplakin 	ENST00000345988.2|PPL|ENSG00000118898.11|periplakin
hg19_v2_chr22_-_20256054_20256054	0.938075	SOX3_SOX2	ENST00000043402.7|RTN4R|ENSG00000040608.9|reticulon 4 receptor
hg19_v2_chr11_+_64058820_64058881	0.93771	SOX3_SOX2	ENST00000422670.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr5_-_171881362_171881397	0.937593	SOX3_SOX2	ENST00000519643.1|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr1_+_97187318_97187380	0.936457	SOX3_SOX2	ENST00000609116.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370198.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000370197.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000426398.2|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2 	ENST00000394184.3|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr3_+_156008809_156008839	0.935553	SOX3_SOX2	ENST00000302490.8|KCNAB1|ENSG00000169282.13|potassium voltage-gated channel, shaker-related subfamily, beta member 1
hg19_v2_chr8_-_27469383_27469483	0.935063	SOX3_SOX2	ENST00000519742.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chrX_+_48114752_48114830	0.932685	SOX3_SOX2	ENST00000376919.3|SSX1|ENSG00000126752.7|synovial sarcoma, X breakpoint 1
hg19_v2_chr3_-_149095652_149095652	0.929958	SOX3_SOX2	ENST00000305366.3|TM4SF1|ENSG00000169908.6|transmembrane 4 L six family member 1
hg19_v2_chr2_+_25264933_25264999	0.928442	SOX3_SOX2	ENST00000401432.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae) 	ENST00000403714.3|EFR3B|ENSG00000084710.9|EFR3 homolog B (S. cerevisiae)
hg19_v2_chr5_+_93954039_93954052	0.928265	SOX3_SOX2	ENST00000265140.5|ANKRD32|ENSG00000133302.8|ankyrin repeat domain 32
hg19_v2_chr8_+_85095769_85095793	0.925963	SOX3_SOX2	ENST00000518566.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chr1_+_159174701_159174727	0.924667	SOX3_SOX2	ENST00000435307.1|DARC|ENSG00000213088.5|Duffy blood group, atypical chemokine receptor
hg19_v2_chr6_+_151358048_151358110	0.923652	SOX3_SOX2	ENST00000450635.1|MTHFD1L|ENSG00000120254.11|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
hg19_v2_chr3_+_44626446_44626477	0.921625	SOX3_SOX2	ENST00000441021.1|ZNF660|ENSG00000144792.5|zinc finger protein 660 	ENST00000322734.2|ZNF660|ENSG00000144792.5|zinc finger protein 660
hg19_v2_chrX_-_110655391_110655449	0.921518	SOX3_SOX2	ENST00000356915.2|DCX|ENSG00000077279.12|doublecortin 	ENST00000356220.3|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr12_-_11508520_11508686	0.921261	SOX3_SOX2	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr7_-_121944491_121944705	0.919664	SOX3_SOX2	ENST00000331178.4|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000427185.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1 	ENST00000442488.2|FEZF1|ENSG00000128610.7|FEZ family zinc finger 1
hg19_v2_chr1_+_47137544_47137550	0.917597	SOX3_SOX2	ENST00000564373.1|TEX38|ENSG00000186118.7|testis expressed 38
hg19_v2_chr6_-_52628271_52628367	0.91756	SOX3_SOX2	ENST00000493422.1|GSTA2|ENSG00000244067.1|glutathione S-transferase alpha 2
hg19_v2_chr1_-_110283660_110283660	0.916322	SOX3_SOX2	ENST00000361066.2|GSTM3|ENSG00000134202.6|glutathione S-transferase mu 3 (brain)
hg19_v2_chr7_+_5632436_5632454	0.916163	SOX3_SOX2	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chr16_+_28875268_28875317	0.915786	SOX3_SOX2	ENST00000395532.4|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr7_-_140340098_140340169	0.915543	SOX3_SOX2	ENST00000477488.1|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A
hg19_v2_chr13_+_43355683_43355705	0.914861	SOX3_SOX2	ENST00000537894.1|FAM216B|ENSG00000179813.2|family with sequence similarity 216, member B
hg19_v2_chr2_-_198540751_198540790	0.913768	SOX3_SOX2	ENST00000429081.1|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr16_-_5116025_5116111	0.912855	SOX3_SOX2	ENST00000472572.3|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000315997.5|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000422873.1|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89 	ENST00000350219.4|C16orf89|ENSG00000153446.11|chromosome 16 open reading frame 89
hg19_v2_chr1_-_9811600_9811639	0.911035	SOX3_SOX2	ENST00000435891.1|CLSTN1|ENSG00000171603.12|calsyntenin 1
hg19_v2_chr6_-_49834209_49834220	0.910866	SOX3_SOX2	ENST00000507853.1|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr1_-_228603694_228603730	0.909592	SOX3_SOX2	ENST00000366697.2|TRIM17|ENSG00000162931.7|tripartite motif containing 17
hg19_v2_chr11_-_84028339_84028387	0.909359	SOX3_SOX2	ENST00000398301.2|DLG2|ENSG00000150672.12|discs, large homolog 2 (Drosophila)
hg19_v2_chr9_-_140142181_140142208	0.90518	SOX3_SOX2	ENST00000484720.1|FAM166A|ENSG00000188163.6|family with sequence similarity 166, member A
hg19_v2_chr17_+_7323634_7323679	0.904738	SOX3_SOX2	ENST00000323675.3|SPEM1|ENSG00000181323.7|spermatid maturation 1
hg19_v2_chr1_-_49242553_49242590	0.904033	SOX3_SOX2	ENST00000371833.3|BEND5|ENSG00000162373.8|BEN domain containing 5
hg19_v2_chr4_-_175041663_175041727	0.903514	SOX3_SOX2	ENST00000503140.1|RP11-148L24.1|ENSG00000248174.1|RP11-148L24.1
hg19_v2_chr21_+_27011584_27011618	0.900636	SOX3_SOX2	ENST00000400532.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000480456.1|JAM2|ENSG00000154721.10|junctional adhesion molecule 2 	ENST00000312957.5|JAM2|ENSG00000154721.10|junctional adhesion molecule 2
hg19_v2_chr3_-_57199397_57199432	0.900294	SOX3_SOX2	ENST00000296318.7|IL17RD|ENSG00000144730.12|interleukin 17 receptor D
hg19_v2_chr10_-_62149433_62149488	0.899661	SOX3_SOX2	ENST00000280772.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr12_+_4829507_4829601	0.898712	SOX3_SOX2	ENST00000252318.2|GALNT8|ENSG00000130035.2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)
hg19_v2_chr8_-_27468842_27468878	0.89846	SOX3_SOX2	ENST00000523500.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr1_+_248524883_248524883	0.897563	SOX3_SOX2	ENST00000366475.1|OR2T4|ENSG00000196944.3|olfactory receptor, family 2, subfamily T, member 4
hg19_v2_chr5_+_140248518_140248689	0.896263	SOX3_SOX2	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr8_-_95908902_95908927	0.893207	SOX3_SOX2	ENST00000520509.1|CCNE2|ENSG00000175305.12|cyclin E2
hg19_v2_chr6_-_49834240_49834253	0.892866	SOX3_SOX2	ENST00000335847.4|CRISP1|ENSG00000124812.10|cysteine-rich secretory protein 1
hg19_v2_chr7_+_94537247_94537342	0.892426	SOX3_SOX2	ENST00000422324.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr13_-_33760216_33760234	0.891914	SOX3_SOX2	ENST00000255486.4|STARD13|ENSG00000133121.16|StAR-related lipid transfer (START) domain containing 13
hg19_v2_chr3_-_107596910_107596940	0.886783	SOX3_SOX2	ENST00000464359.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000464823.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000466155.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000473528.2|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608306.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000488852.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608137.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000608307.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000609429.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000601385.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000475362.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600240.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635 	ENST00000600749.1|LINC00635|ENSG00000241469.3|long intergenic non-protein coding RNA 635
hg19_v2_chr19_-_42348692_42348771	0.886737	SOX3_SOX2	ENST00000330743.3|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4 	ENST00000601246.1|LYPD4|ENSG00000183103.6|LY6/PLAUR domain containing 4
hg19_v2_chr18_+_32402321_32402331	0.885711	SOX3_SOX2	ENST00000587723.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr6_-_105307417_105307435	0.885545	SOX3_SOX2	ENST00000524020.1|HACE1|ENSG00000085382.7|HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
hg19_v2_chr5_+_34656529_34656549	0.885523	SOX3_SOX2	ENST00000513974.1|RAI14|ENSG00000039560.9|retinoic acid induced 14 	ENST00000512629.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr3_-_123339418_123339473	0.88544	SOX3_SOX2	ENST00000583087.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr13_-_30880979_30881008	0.883337	SOX3_SOX2	ENST00000414289.1|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr10_+_71389983_71390040	0.883004	SOX3_SOX2	ENST00000373279.4|C10orf35|ENSG00000171224.7|chromosome 10 open reading frame 35
hg19_v2_chr1_-_153013588_153013605	0.882951	SOX3_SOX2	ENST00000360379.3|SPRR2D|ENSG00000163216.6|small proline-rich protein 2D
hg19_v2_chr7_+_86273850_86273914	0.882881	SOX3_SOX2	ENST00000454217.1|GRM3|ENSG00000198822.6|glutamate receptor, metabotropic 3
hg19_v2_chr6_-_80247140_80247175	0.882462	SOX3_SOX2	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr15_-_76304731_76304785	0.880452	SOX3_SOX2	ENST00000394907.3|NRG4|ENSG00000169752.12|neuregulin 4
hg19_v2_chr22_-_31536480_31536593	0.878165	SOX3_SOX2	ENST00000215885.3|PLA2G3|ENSG00000100078.3|phospholipase A2, group III
hg19_v2_chr18_-_73967160_73967169	0.877264	SOX3_SOX2	ENST00000579714.1|RP11-94B19.7|ENSG00000265717.1|RP11-94B19.7
hg19_v2_chr16_+_32264645_32264662	0.876763	SOX3_SOX2	ENST00000569631.1|TP53TG3D|ENSG00000205456.7|TP53 target 3D 	ENST00000354614.3|TP53TG3D|ENSG00000205456.7|TP53 target 3D
hg19_v2_chr18_-_7117813_7117843	0.875364	SOX3_SOX2	ENST00000389658.3|LAMA1|ENSG00000101680.9|laminin, alpha 1
hg19_v2_chr1_-_65533390_65533443	0.873951	SOX3_SOX2	ENST00000448344.1|RP4-535B20.1|ENSG00000231485.1|RP4-535B20.1
hg19_v2_chr11_+_125034586_125034604	0.872274	SOX3_SOX2	ENST00000298282.9|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr9_-_120177216_120177341	0.871368	SOX3_SOX2	ENST00000373996.3|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000313400.4|ASTN2|ENSG00000148219.12|astrotactin 2 	ENST00000361477.3|ASTN2|ENSG00000148219.12|astrotactin 2
hg19_v2_chr15_-_49338624_49338700	0.869122	SOX3_SOX2	ENST00000261847.3|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000380927.2|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like 	ENST00000559424.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr15_-_78111788_78111799	0.867688	SOX3_SOX2	ENST00000566711.1|LINGO1|ENSG00000169783.8|leucine rich repeat and Ig domain containing 1
hg19_v2_chr7_+_73245193_73245337	0.865465	SOX3_SOX2	ENST00000340958.2|CLDN4|ENSG00000189143.8|claudin 4
hg19_v2_chr9_-_115818951_115819011	0.864188	SOX3_SOX2	ENST00000553380.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein 	ENST00000374227.3|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr12_-_11150474_11150474	0.863339	SOX3_SOX2	ENST00000538986.1|TAS2R20|ENSG00000255837.1|taste receptor, type 2, member 20
hg19_v2_chr6_+_46620705_46620732	0.86329	SOX3_SOX2	ENST00000452689.2|SLC25A27|ENSG00000153291.11|solute carrier family 25, member 27
hg19_v2_chr9_+_96846740_96846767	0.862394	SOX3_SOX2	ENST00000288976.3|PTPDC1|ENSG00000158079.10|protein tyrosine phosphatase domain containing 1
hg19_v2_chr7_-_142583506_142583510	0.862256	SOX3_SOX2	ENST00000359396.3|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr17_-_42276574_42276742	0.861515	SOX3_SOX2	ENST00000589805.1|ATXN7L3|ENSG00000087152.11|ataxin 7-like 3
hg19_v2_chr13_+_31506818_31506853	0.857299	SOX3_SOX2	ENST00000380473.3|TEX26|ENSG00000175664.5|testis expressed 26
hg19_v2_chr20_-_30458354_30458384	0.856957	SOX3_SOX2	ENST00000428829.1|DUSP15|ENSG00000149599.11|dual specificity phosphatase 15
hg19_v2_chr5_-_38595498_38595514	0.856575	SOX3_SOX2	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr8_+_103991013_103991127	0.856537	SOX3_SOX2	ENST00000517983.1|KB-1507C5.4|ENSG00000254281.1|KB-1507C5.4
hg19_v2_chr13_+_113656047_113656068	0.855194	SOX3_SOX2	ENST00000375597.4|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_+_227751281_227751298	0.854969	SOX3_SOX2	ENST00000440339.1|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr11_-_46848393_46848439	0.852375	SOX3_SOX2	ENST00000526496.1|CKAP5|ENSG00000175216.10|cytoskeleton associated protein 5
hg19_v2_chr2_-_198540719_198540748	0.849239	SOX3_SOX2	ENST00000295049.4|RFTN2|ENSG00000162944.6|raftlin family member 2
hg19_v2_chr1_-_120439112_120439125	0.845585	SOX3_SOX2	ENST00000369400.1|ADAM30|ENSG00000134249.6|ADAM metallopeptidase domain 30
hg19_v2_chr14_-_51027838_51027851	0.845178	SOX3_SOX2	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr12_-_58027002_58027022	0.844604	SOX3_SOX2	ENST00000449184.3|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr12_+_52203789_52203789	0.843813	SOX3_SOX2	ENST00000599343.1|AC068987.1|ENSG00000260415.3|HCG1997999; cDNA FLJ33996 fis, clone DFNES2008881
hg19_v2_chr17_-_42906965_42907062	0.843454	SOX3_SOX2	ENST00000586267.1|GJC1|ENSG00000182963.5|gap junction protein, gamma 1, 45kDa
hg19_v2_chr9_+_80912059_80912081	0.843383	SOX3_SOX2	ENST00000347159.2|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1 	ENST00000376588.3|PSAT1|ENSG00000135069.9|phosphoserine aminotransferase 1
hg19_v2_chrX_+_103294483_103294530	0.843224	SOX3_SOX2	ENST00000355016.3|H2BFM|ENSG00000101812.8|H2B histone family, member M
hg19_v2_chr1_+_109419804_109419878	0.841295	SOX3_SOX2	ENST00000435475.1|GPSM2|ENSG00000121957.8|G-protein signaling modulator 2
hg19_v2_chr16_-_30798492_30798535	0.840604	SOX3_SOX2	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr8_+_63161550_63161633	0.839835	SOX3_SOX2	ENST00000328472.5|NKAIN3|ENSG00000185942.7|Na+/K+ transporting ATPase interacting 3
hg19_v2_chr3_-_138312971_138313132	0.839403	SOX3_SOX2	ENST00000485115.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000484888.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000468900.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000542237.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000481834.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr6_+_44310376_44310413	0.839354	SOX3_SOX2	ENST00000515220.1|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1 	ENST00000323108.8|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr5_+_128795958_128796012	0.838657	SOX3_SOX2	ENST00000274487.4|ADAMTS19|ENSG00000145808.4|ADAM metallopeptidase with thrombospondin type 1 motif, 19
hg19_v2_chr7_+_134464376_134464413	0.838461	SOX3_SOX2	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr8_+_104831440_104831453	0.836076	SOX3_SOX2	ENST00000515551.1|RIMS2|ENSG00000176406.16|regulating synaptic membrane exocytosis 2
hg19_v2_chr5_+_173930710_173930818	0.835998	SOX3_SOX2	ENST00000511707.1|RP11-267A15.1|ENSG00000249306.1|RP11-267A15.1
hg19_v2_chrX_-_8139308_8139308	0.835937	SOX3_SOX2	ENST00000317103.4|VCX2|ENSG00000177504.9|variable charge, X-linked 2
hg19_v2_chr5_+_140772381_140772381	0.83591	SOX3_SOX2	ENST00000398604.2|PCDHGA8|ENSG00000253767.1|protocadherin gamma subfamily A, 8
hg19_v2_chr11_-_13461790_13461826	0.833847	SOX3_SOX2	ENST00000530907.1|BTBD10|ENSG00000148925.6|BTB (POZ) domain containing 10
hg19_v2_chr20_+_207892_207905	0.833424	SOX3_SOX2	ENST00000246105.4|DEFB129|ENSG00000125903.4|defensin, beta 129
hg19_v2_chr4_-_186877502_186877563	0.832423	SOX3_SOX2	ENST00000431902.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000284776.7|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000415274.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr14_-_22005062_22005082	0.831311	SOX3_SOX2	ENST00000317492.5|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr12_-_48963829_48963849	0.82922	SOX3_SOX2	ENST00000301046.2|LALBA|ENSG00000167531.2|lactalbumin, alpha- 	ENST00000549817.1|LALBA|ENSG00000167531.2|lactalbumin, alpha-
hg19_v2_chr1_-_6545502_6545548	0.828111	SOX3_SOX2	ENST00000535355.1|PLEKHG5|ENSG00000171680.16|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
hg19_v2_chr19_-_55690758_55690780	0.827959	SOX3_SOX2	ENST00000590851.1|SYT5|ENSG00000129990.10|synaptotagmin V
hg19_v2_chr5_-_41071392_41071405	0.826323	SOX3_SOX2	ENST00000399564.4|MROH2B|ENSG00000171495.12|maestro heat-like repeat family member 2B
hg19_v2_chr19_-_59031118_59031193	0.82416	SOX3_SOX2	ENST00000600990.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr20_+_6748311_6748352	0.82384	SOX3_SOX2	ENST00000378827.4|BMP2|ENSG00000125845.6|bone morphogenetic protein 2
hg19_v2_chr8_+_99076509_99076539	0.823393	SOX3_SOX2	ENST00000318528.3|C8orf47|ENSG00000177459.6|chromosome 8 open reading frame 47
hg19_v2_chr13_+_36920569_36920569	0.823337	SOX3_SOX2	ENST00000379848.2|SPG20OS|ENSG00000120664.6|SPG20 opposite strand
hg19_v2_chr12_-_49582978_49583107	0.823196	SOX3_SOX2	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr15_-_35047166_35047204	0.82063	SOX3_SOX2	ENST00000290374.4|GJD2|ENSG00000159248.4|gap junction protein, delta 2, 36kDa
hg19_v2_chr5_+_140767452_140767452	0.820452	SOX3_SOX2	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr9_-_140196703_140196744	0.818911	SOX3_SOX2	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chrX_-_140673133_140673133	0.818777	SOX3_SOX2	ENST00000370519.3|SPANXA1|ENSG00000198021.5|sperm protein associated with the nucleus, X-linked, family member A1
hg19_v2_chr18_-_64271363_64271390	0.818661	SOX3_SOX2	ENST00000262150.2|CDH19|ENSG00000071991.4|cadherin 19, type 2
hg19_v2_chr20_-_25566153_25566211	0.818376	SOX3_SOX2	ENST00000278886.6|NINL|ENSG00000101004.10|ninein-like 	ENST00000422516.1|NINL|ENSG00000101004.10|ninein-like
hg19_v2_chr8_-_95487272_95487330	0.818279	SOX3_SOX2	ENST00000297592.5|RAD54B|ENSG00000197275.8|RAD54 homolog B (S. cerevisiae)
hg19_v2_chr4_-_138453606_138453673	0.817485	SOX3_SOX2	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr5_+_140800638_140800795	0.815482	SOX3_SOX2	ENST00000398587.2|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11 	ENST00000518882.1|PCDHGA11|ENSG00000253873.1|protocadherin gamma subfamily A, 11
hg19_v2_chr6_+_134758827_134758863	0.814418	SOX3_SOX2	ENST00000431422.1|LINC01010|ENSG00000236700.1|long intergenic non-protein coding RNA 1010
hg19_v2_chr11_-_8892464_8892677	0.812586	SOX3_SOX2	ENST00000527347.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526241.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526126.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000530938.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000526057.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5
hg19_v2_chr2_-_239148599_239148765	0.812515	SOX3_SOX2	ENST00000409182.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409002.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000450098.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409356.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409160.3|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000409574.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6 	ENST00000272937.5|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6
hg19_v2_chr17_-_39661849_39661871	0.811957	SOX3_SOX2	ENST00000246635.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000336861.3|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587544.1|KRT13|ENSG00000171401.10|keratin 13 	ENST00000587435.1|KRT13|ENSG00000171401.10|keratin 13
hg19_v2_chr8_+_103876528_103876594	0.811869	SOX3_SOX2	ENST00000522939.1|KB-1507C5.2|ENSG00000253320.1|HCG15011, isoform CRA_a; Protein LOC100996457  	ENST00000524007.1|KB-1507C5.2|ENSG00000253320.1|HCG15011, isoform CRA_a; Protein LOC100996457
hg19_v2_chr19_+_41256764_41256825	0.81026	SOX3_SOX2	ENST00000243563.3|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000601253.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000597353.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A 	ENST00000599362.1|SNRPA|ENSG00000077312.4|small nuclear ribonucleoprotein polypeptide A
hg19_v2_chr3_-_138313161_138313198	0.809323	SOX3_SOX2	ENST00000489254.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000474781.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000462419.1|CEP70|ENSG00000114107.4|centrosomal protein 70kDa 	ENST00000264982.3|CEP70|ENSG00000114107.4|centrosomal protein 70kDa
hg19_v2_chr19_-_36705763_36705777	0.807437	SOX3_SOX2	ENST00000591473.1|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr5_-_114631958_114631990	0.806928	SOX3_SOX2	ENST00000395557.4|CCDC112|ENSG00000164221.8|coiled-coil domain containing 112
hg19_v2_chr19_+_58514229_58514289	0.805642	SOX3_SOX2	ENST00000546949.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000553254.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000547364.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein
hg19_v2_chr19_-_46476791_46476819	0.805137	SOX3_SOX2	ENST00000263257.5|NOVA2|ENSG00000104967.6|neuro-oncological ventral antigen 2
hg19_v2_chr7_+_87257701_87257770	0.804126	SOX3_SOX2	ENST00000338056.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B 	ENST00000493037.1|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr12_-_95010147_95010196	0.80372	SOX3_SOX2	ENST00000548918.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr11_+_64058758_64058797	0.803177	SOX3_SOX2	ENST00000538767.1|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr11_+_19799327_19799472	0.802372	SOX3_SOX2	ENST00000540292.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr5_-_88180342_88180385	0.800988	SOX3_SOX2	ENST00000502983.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr6_+_30594619_30594665	0.800417	SOX3_SOX2	ENST00000318999.7|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376485.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376478.2|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000319027.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000376483.4|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000329992.8|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1 	ENST00000330083.5|ATAT1|ENSG00000137343.13|alpha tubulin acetyltransferase 1
hg19_v2_chr19_+_52839515_52839572	0.799633	SOX3_SOX2	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr17_+_38171681_38171740	0.798465	SOX3_SOX2	ENST00000225474.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000331769.2|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394148.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000577675.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr2_+_5866581_5866610	0.798449	SOX3_SOX2	ENST00000413960.1|AC010729.2|ENSG00000236106.1|AC010729.2
hg19_v2_chr6_+_112375275_112375334	0.798285	SOX3_SOX2	ENST00000368666.2|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000604763.1|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3 	ENST00000230529.5|WISP3|ENSG00000112761.14|WNT1 inducible signaling pathway protein 3
hg19_v2_chr7_-_111846435_111846471	0.797173	SOX3_SOX2	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chr6_-_32374900_32374905	0.796988	SOX3_SOX2	ENST00000374995.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000374993.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000414363.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000540315.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000544175.1|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000429232.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000454136.3|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated) 	ENST00000446536.2|BTNL2|ENSG00000204290.6|butyrophilin-like 2 (MHC class II associated)
hg19_v2_chr19_+_35606692_35606769	0.79623	SOX3_SOX2	ENST00000406242.3|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3 	ENST00000454903.2|FXYD3|ENSG00000089356.12|FXYD domain containing ion transport regulator 3
hg19_v2_chr3_+_38323785_38323789	0.796002	SOX3_SOX2	ENST00000466887.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14 	ENST00000448498.1|SLC22A14|ENSG00000144671.6|solute carrier family 22, member 14
hg19_v2_chr3_-_169530574_169530774	0.795115	SOX3_SOX2	ENST00000316515.7|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522830.1|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34 	ENST00000522526.2|LRRC34|ENSG00000171757.11|leucine rich repeat containing 34
hg19_v2_chr2_+_9346892_9346948	0.794968	SOX3_SOX2	ENST00000281419.3|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENST00000315273.4|ASAP2|ENSG00000151693.5|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
hg19_v2_chr14_-_50999190_50999225	0.79303	SOX3_SOX2	ENST00000557390.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr22_-_36357671_36357714	0.792618	SOX3_SOX2	ENST00000408983.2|RBFOX2|ENSG00000100320.18|RNA binding protein, fox-1 homolog (C. elegans) 2
hg19_v2_chr9_-_88874519_88874577	0.792503	SOX3_SOX2	ENST00000376001.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153 	ENST00000339137.3|C9orf153|ENSG00000187753.8|chromosome 9 open reading frame 153
hg19_v2_chr6_+_44310421_44310486	0.791939	SOX3_SOX2	ENST00000288390.2|SPATS1|ENSG00000249481.2|spermatogenesis associated, serine-rich 1
hg19_v2_chr1_-_95783809_95783828	0.790735	SOX3_SOX2	ENST00000423410.1|RP4-586O15.1|ENSG00000228504.1|RP4-586O15.1
hg19_v2_chr9_-_115249484_115249484	0.790236	SOX3_SOX2	ENST00000457681.1|C9orf147|ENSG00000230185.4|chromosome 9 open reading frame 147
hg19_v2_chrX_+_89176881_89176955	0.790179	SOX3_SOX2	ENST00000283891.5|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked 	ENST00000561129.2|TGIF2LX|ENSG00000153779.8|TGFB-induced factor homeobox 2-like, X-linked
hg19_v2_chr2_-_166060382_166060411	0.789665	SOX3_SOX2	ENST00000409101.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr6_-_52774464_52774499	0.789595	SOX3_SOX2	ENST00000370968.1|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3 	ENST00000211122.3|GSTA3|ENSG00000174156.9|glutathione S-transferase alpha 3
hg19_v2_chr11_-_70672645_70672711	0.786479	SOX3_SOX2	ENST00000423696.2|SHANK2|ENSG00000162105.12|SH3 and multiple ankyrin repeat domains 2
hg19_v2_chr11_+_19798964_19799013	0.783452	SOX3_SOX2	ENST00000527559.2|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr3_-_165555200_165555260	0.779377	SOX3_SOX2	ENST00000479451.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000540653.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000488954.1|BCHE|ENSG00000114200.5|butyrylcholinesterase 	ENST00000264381.3|BCHE|ENSG00000114200.5|butyrylcholinesterase
hg19_v2_chrX_+_55744228_55744318	0.77925	SOX3_SOX2	ENST00000262850.7|RRAGB|ENSG00000083750.8|Ras-related GTP binding B
hg19_v2_chr6_-_80247105_80247133	0.77903	SOX3_SOX2	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr4_+_88571429_88571459	0.778334	SOX3_SOX2	ENST00000339673.6|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1 	ENST00000282479.7|DMP1|ENSG00000152592.9|dentin matrix acidic phosphoprotein 1
hg19_v2_chr3_-_128690173_128690173	0.776535	SOX3_SOX2	ENST00000508239.1|RP11-723O4.6|ENSG00000187695.6|Uncharacterized protein FLJ43738
hg19_v2_chr1_-_235814048_235814067	0.774609	SOX3_SOX2	ENST00000450593.1|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4 	ENST00000366598.4|GNG4|ENSG00000168243.6|guanine nucleotide binding protein (G protein), gamma 4
hg19_v2_chr18_+_9885934_9885943	0.77299	SOX3_SOX2	ENST00000357775.5|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr11_+_125658006_125658027	0.772449	SOX3_SOX2	ENST00000445202.1|PATE3|ENSG00000236027.2|prostate and testis expressed 3
hg19_v2_chr17_+_19186292_19186414	0.772007	SOX3_SOX2	ENST00000395626.1|EPN2|ENSG00000072134.11|epsin 2 	ENST00000571254.1|EPN2|ENSG00000072134.11|epsin 2
hg19_v2_chr12_-_58026920_58026993	0.770997	SOX3_SOX2	ENST00000550764.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1 	ENST00000551220.1|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr11_+_113779704_113779727	0.770724	SOX3_SOX2	ENST00000537778.1|HTR3B|ENSG00000149305.2|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic
hg19_v2_chr20_+_34556488_34556545	0.769903	SOX3_SOX2	ENST00000373973.3|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000349339.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2 	ENST00000538900.1|CNBD2|ENSG00000149646.8|cyclic nucleotide binding domain containing 2
hg19_v2_chr10_+_18549645_18549698	0.768711	SOX3_SOX2	ENST00000396576.2|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr12_+_133614119_133614166	0.768359	SOX3_SOX2	ENST00000327668.7|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr5_+_125758813_125758845	0.767508	SOX3_SOX2	ENST00000285689.3|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000515200.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr10_-_10836865_10836899	0.766918	SOX3_SOX2	ENST00000446372.2|SFTA1P|ENSG00000225383.2|surfactant associated 1, pseudogene
hg19_v2_chr14_+_24521202_24521267	0.764395	SOX3_SOX2	ENST00000334420.7|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B 	ENST00000342740.5|LRRC16B|ENSG00000186648.10|leucine rich repeat containing 16B
hg19_v2_chr5_-_157079428_157079452	0.762978	SOX3_SOX2	ENST00000265007.6|SOX30|ENSG00000039600.6|SRY (sex determining region Y)-box 30
hg19_v2_chr8_-_110620284_110620304	0.761731	SOX3_SOX2	ENST00000529690.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr9_+_90497741_90497775	0.757446	SOX3_SOX2	ENST00000325643.5|SPATA31E1|ENSG00000177992.9|SPATA31 subfamily E, member 1
hg19_v2_chr18_+_9885961_9885992	0.75722	SOX3_SOX2	ENST00000306084.6|TXNDC2|ENSG00000168454.10|thioredoxin domain containing 2 (spermatozoa)
hg19_v2_chr7_-_37382683_37382783	0.757063	SOX3_SOX2	ENST00000455879.1|ELMO1|ENSG00000155849.11|engulfment and cell motility 1
hg19_v2_chr1_-_231004738_231004754	0.755047	SOX3_SOX2	ENST00000522201.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr7_-_24797032_24797162	0.754172	SOX3_SOX2	ENST00000409970.1|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5 	ENST00000409775.3|DFNA5|ENSG00000105928.9|deafness, autosomal dominant 5
hg19_v2_chr5_-_96478457_96478463	0.75319	SOX3_SOX2	ENST00000512378.1|LIX1|ENSG00000145721.7|Lix1 homolog (chicken)
hg19_v2_chr6_+_122720681_122720713	0.752962	SOX3_SOX2	ENST00000368455.4|HSF2|ENSG00000025156.8|heat shock transcription factor 2 	ENST00000452194.1|HSF2|ENSG00000025156.8|heat shock transcription factor 2
hg19_v2_chr7_+_73868120_73868216	0.752509	SOX3_SOX2	ENST00000265755.3|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chrX_+_101478829_101478939	0.74962	SOX3_SOX2	ENST00000372763.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2 	ENST00000372758.1|NXF2|ENSG00000185554.10|nuclear RNA export factor 2
hg19_v2_chr6_+_101846664_101846702	0.748608	SOX3_SOX2	ENST00000421544.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000413795.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000369138.1|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2 	ENST00000358361.3|GRIK2|ENSG00000164418.15|glutamate receptor, ionotropic, kainate 2
hg19_v2_chr5_-_137514617_137514686	0.748397	SOX3_SOX2	ENST00000254900.5|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr16_-_52580920_52580992	0.748286	SOX3_SOX2	ENST00000219746.9|TOX3|ENSG00000103460.12|TOX high mobility group box family member 3
hg19_v2_chr1_-_31381528_31381659	0.746529	SOX3_SOX2	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr3_+_119814070_119814134	0.74641	SOX3_SOX2	ENST00000469070.1|RP11-18H7.1|ENSG00000242622.1|RP11-18H7.1
hg19_v2_chr2_+_27237615_27237667	0.745912	SOX3_SOX2	ENST00000458529.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3 	ENST00000402218.1|MAPRE3|ENSG00000084764.6|microtubule-associated protein, RP/EB family, member 3
hg19_v2_chr1_+_89990431_89990493	0.745119	SOX3_SOX2	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr2_+_215275771_215275789	0.743752	SOX3_SOX2	ENST00000312504.5|VWC2L|ENSG00000174453.5|von Willebrand factor C domain containing protein 2-like 	ENST00000427124.1|VWC2L|ENSG00000174453.5|von Willebrand factor C domain containing protein 2-like
hg19_v2_chr12_-_14133053_14133159	0.743208	SOX3_SOX2	ENST00000609686.1|GRIN2B|ENSG00000273079.1|glutamate receptor, ionotropic, N-methyl D-aspartate 2B
hg19_v2_chr19_+_21264943_21264965	0.742492	SOX3_SOX2	ENST00000597424.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr4_+_175839517_175839528	0.740325	SOX3_SOX2	ENST00000502940.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000502305.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr7_+_128828713_128828713	0.740238	SOX3_SOX2	ENST00000249373.3|SMO|ENSG00000128602.5|smoothened, frizzled family receptor
hg19_v2_chr7_-_96654133_96654409	0.739921	SOX3_SOX2	ENST00000486603.2|DLX5|ENSG00000105880.4|distal-less homeobox 5 	ENST00000222598.4|DLX5|ENSG00000105880.4|distal-less homeobox 5
hg19_v2_chr19_+_45409011_45409069	0.739916	SOX3_SOX2	ENST00000252486.4|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000446996.1|APOE|ENSG00000130203.5|apolipoprotein E 	ENST00000434152.1|APOE|ENSG00000130203.5|apolipoprotein E
hg19_v2_chr10_+_29577974_29578011	0.739685	SOX3_SOX2	ENST00000375500.3|LYZL1|ENSG00000120563.4|lysozyme-like 1
hg19_v2_chr1_+_89990378_89990429	0.739226	SOX3_SOX2	ENST00000449440.1|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chrX_+_37545012_37545064	0.738611	SOX3_SOX2	ENST00000378616.3|XK|ENSG00000047597.5|X-linked Kx blood group (McLeod syndrome)
hg19_v2_chr1_-_43424500_43424546	0.738491	SOX3_SOX2	ENST00000415851.2|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000426263.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1 	ENST00000372500.3|SLC2A1|ENSG00000117394.15|solute carrier family 2 (facilitated glucose transporter), member 1
hg19_v2_chr19_-_36705547_36705597	0.738364	SOX3_SOX2	ENST00000304116.5|ZNF565|ENSG00000196357.7|zinc finger protein 565
hg19_v2_chr6_+_168418553_168418581	0.738	SOX3_SOX2	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr5_+_125758865_125758876	0.736542	SOX3_SOX2	ENST00000542322.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3 	ENST00000544396.1|GRAMD3|ENSG00000155324.5|GRAM domain containing 3
hg19_v2_chr7_+_105603699_105603732	0.736526	SOX3_SOX2	ENST00000478080.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr15_-_93353028_93353119	0.736273	SOX3_SOX2	ENST00000557398.2|FAM174B|ENSG00000185442.8|family with sequence similarity 174, member B
hg19_v2_chr2_-_197458323_197458416	0.734545	SOX3_SOX2	ENST00000452031.1|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr14_-_71276211_71276255	0.733167	SOX3_SOX2	ENST00000381250.4|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9 	ENST00000555993.2|MAP3K9|ENSG00000006432.11|mitogen-activated protein kinase kinase kinase 9
hg19_v2_chr7_+_150076406_150076456	0.731868	SOX3_SOX2	ENST00000329630.5|ZNF775|ENSG00000196456.4|zinc finger protein 775
hg19_v2_chr20_-_29994007_29994069	0.731425	SOX3_SOX2	ENST00000376314.2|DEFB121|ENSG00000204548.3|defensin, beta 121
hg19_v2_chr5_+_34656331_34656351	0.731409	SOX3_SOX2	ENST00000265109.3|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr19_+_43325937_43326015	0.731383	SOX3_SOX2	ENST00000425668.1|AC004603.4|ENSG00000225877.1|AC004603.4
hg19_v2_chr5_-_150284351_150284443	0.731061	SOX3_SOX2	ENST00000427179.1|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr20_-_43977055_43977073	0.729461	SOX3_SOX2	ENST00000372733.3|SDC4|ENSG00000124145.5|syndecan 4 	ENST00000537976.1|SDC4|ENSG00000124145.5|syndecan 4
hg19_v2_chr2_+_220309379_220309413	0.728492	SOX3_SOX2	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr4_-_83351005_83351019	0.727831	SOX3_SOX2	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr8_+_86019382_86019487	0.727683	SOX3_SOX2	ENST00000360375.3|LRRCC1|ENSG00000133739.11|leucine rich repeat and coiled-coil centrosomal protein 1
hg19_v2_chr13_-_49975632_49975735	0.72682	SOX3_SOX2	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr3_-_66024213_66024238	0.72511	SOX3_SOX2	ENST00000483466.1|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr8_-_27468717_27468788	0.723093	SOX3_SOX2	ENST00000520796.1|CLU|ENSG00000120885.15|clusterin 	ENST00000520491.1|CLU|ENSG00000120885.15|clusterin
hg19_v2_chr1_-_116383322_116383362	0.719581	SOX3_SOX2	ENST00000429731.1|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chrX_-_15683147_15683159	0.719425	SOX3_SOX2	ENST00000380342.3|TMEM27|ENSG00000147003.5|transmembrane protein 27
hg19_v2_chr1_-_115259337_115259515	0.718623	SOX3_SOX2	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr19_+_7580103_7580178	0.718609	SOX3_SOX2	ENST00000596712.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr11_-_117747327_117747384	0.714885	SOX3_SOX2	ENST00000584230.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000527429.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000584394.1|FXYD6|ENSG00000137726.11|FXYD domain containing ion transport regulator 6 	ENST00000532984.1|FXYD6-FXYD2|ENSG00000255245.3|FXYD6-FXYD2 readthrough
hg19_v2_chr5_+_65222500_65222601	0.713877	SOX3_SOX2	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr2_+_220408724_220408789	0.713267	SOX3_SOX2	ENST00000421791.1|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000373883.3|TMEM198|ENSG00000188760.6|transmembrane protein 198 	ENST00000451952.1|TMEM198|ENSG00000188760.6|transmembrane protein 198
hg19_v2_chr18_-_53089538_53089586	0.712718	SOX3_SOX2	ENST00000566777.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr14_-_21516590_21516692	0.712162	SOX3_SOX2	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr6_-_142409936_142409936	0.711472	SOX3_SOX2	ENST00000258042.1|NMBR|ENSG00000135577.4|neuromedin B receptor
hg19_v2_chr13_-_36920872_36920934	0.711346	SOX3_SOX2	ENST00000451493.1|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr20_-_36889127_36889174	0.710852	SOX3_SOX2	ENST00000279024.4|KIAA1755|ENSG00000149633.7|KIAA1755
hg19_v2_chr3_-_123339343_123339401	0.71038	SOX3_SOX2	ENST00000578202.1|MYLK|ENSG00000065534.14|myosin light chain kinase
hg19_v2_chr19_+_37960466_37960478	0.708817	SOX3_SOX2	ENST00000589725.1|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr19_+_9473676_9473712	0.708804	SOX3_SOX2	ENST00000343499.4|ZNF177|ENSG00000188629.7|zinc finger protein 177 	ENST00000592912.1|ZNF177|ENSG00000188629.7|zinc finger protein 177
hg19_v2_chr19_-_23941639_23941672	0.708395	SOX3_SOX2	ENST00000395385.3|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000531570.1|ZNF681|ENSG00000196172.8|zinc finger protein 681 	ENST00000528059.1|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr13_+_113656022_113656041	0.707928	SOX3_SOX2	ENST00000423482.2|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr22_+_27068704_27068763	0.706692	SOX3_SOX2	ENST00000444388.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000450963.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000449017.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr18_+_56530794_56530845	0.706574	SOX3_SOX2	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chrX_-_13338518_13338518	0.705709	SOX3_SOX2	ENST00000380622.2|ATXN3L|ENSG00000123594.3|ataxin 3-like
hg19_v2_chr12_-_109797249_109797293	0.704938	SOX3_SOX2	ENST00000538041.1|RP11-256L11.1|ENSG00000256560.1|RP11-256L11.1
hg19_v2_chr22_+_27053545_27053561	0.700324	SOX3_SOX2	ENST00000458302.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000419237.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr14_+_20295608_20295608	0.700322	SOX3_SOX2	ENST00000568211.1|OR4N2|ENSG00000176294.3|olfactory receptor, family 4, subfamily N, member 2 	ENST00000315947.1|OR4N2|ENSG00000176294.3|olfactory receptor, family 4, subfamily N, member 2
hg19_v2_chr1_-_63153944_63154110	0.699796	SOX3_SOX2	ENST00000340370.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000404627.2|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7 	ENST00000251157.5|DOCK7|ENSG00000116641.11|dedicator of cytokinesis 7
hg19_v2_chr9_-_41327364_41327364	0.697691	SOX3_SOX2	ENST00000377509.2|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4 	ENST00000429767.1|SPATA31A4|ENSG00000234214.3|SPATA31 subfamily A, member 4
hg19_v2_chr6_-_41040195_41040263	0.695418	SOX3_SOX2	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr5_+_34656569_34656588	0.695263	SOX3_SOX2	ENST00000428746.2|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr3_-_112360116_112360153	0.695111	SOX3_SOX2	ENST00000206423.3|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80 	ENST00000439685.2|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr19_-_36247910_36247937	0.694577	SOX3_SOX2	ENST00000587965.1|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6 	ENST00000004982.3|HSPB6|ENSG00000004776.7|heat shock protein, alpha-crystallin-related, B6
hg19_v2_chr4_+_156680153_156680242	0.693656	SOX3_SOX2	ENST00000502959.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000505764.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000507146.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000264424.8|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3 	ENST00000503520.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr1_+_90460661_90460745	0.693015	SOX3_SOX2	ENST00000340281.4|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000361911.5|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000370447.3|ZNF326|ENSG00000162664.12|zinc finger protein 326 	ENST00000455342.2|ZNF326|ENSG00000162664.12|zinc finger protein 326
hg19_v2_chr1_-_161168834_161168851	0.692397	SOX3_SOX2	ENST00000367995.3|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4 	ENST00000367996.5|ADAMTS4|ENSG00000158859.9|ADAM metallopeptidase with thrombospondin type 1 motif, 4
hg19_v2_chr17_-_74639886_74639920	0.691612	SOX3_SOX2	ENST00000156626.7|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr9_+_123884038_123884096	0.690504	SOX3_SOX2	ENST00000373847.1|CNTRL|ENSG00000119397.12|centriolin
hg19_v2_chr5_-_137090028_137090075	0.688553	SOX3_SOX2	ENST00000314940.4|HNRNPA0|ENSG00000177733.4|heterogeneous nuclear ribonucleoprotein A0
hg19_v2_chr3_-_10149907_10149944	0.688137	SOX3_SOX2	ENST00000450660.2|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand 	ENST00000524279.1|FANCD2OS|ENSG00000163705.8|FANCD2 opposite strand
hg19_v2_chr11_-_85397167_85397320	0.686587	SOX3_SOX2	ENST00000316398.3|CCDC89|ENSG00000179071.3|coiled-coil domain containing 89
hg19_v2_chr1_+_43424698_43424725	0.685452	SOX3_SOX2	ENST00000431759.1|SLC2A1-AS1|ENSG00000227533.1|SLC2A1 antisense RNA 1
hg19_v2_chr10_-_105845674_105845760	0.684909	SOX3_SOX2	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr5_-_171881491_171881554	0.683745	SOX3_SOX2	ENST00000311601.5|SH3PXD2B|ENSG00000174705.7|SH3 and PX domains 2B
hg19_v2_chr19_+_58790314_58790358	0.682347	SOX3_SOX2	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr1_+_156338993_156339011	0.681868	SOX3_SOX2	ENST00000368249.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000368246.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000537040.1|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000400992.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000255013.3|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene) 	ENST00000451864.2|RHBG|ENSG00000132677.8|Rh family, B glycoprotein (gene/pseudogene)
hg19_v2_chr19_-_23941680_23941704	0.680062	SOX3_SOX2	ENST00000402377.3|ZNF681|ENSG00000196172.8|zinc finger protein 681
hg19_v2_chr16_+_28875126_28875195	0.679934	SOX3_SOX2	ENST00000359285.5|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1 	ENST00000538342.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr4_+_141178440_141178472	0.679882	SOX3_SOX2	ENST00000394205.3|SCOC|ENSG00000153130.13|short coiled-coil protein
hg19_v2_chr1_-_247171347_247171395	0.679763	SOX3_SOX2	ENST00000339986.7|ZNF695|ENSG00000197472.10|zinc finger protein 695 	ENST00000487338.2|ZNF695|ENSG00000197472.10|zinc finger protein 695
hg19_v2_chr6_-_72129806_72129970	0.679519	SOX3_SOX2	ENST00000413945.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000602878.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000436803.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000421704.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472 	ENST00000441570.1|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr20_-_17511962_17512033	0.679251	SOX3_SOX2	ENST00000377873.3|BFSP1|ENSG00000125864.7|beaded filament structural protein 1, filensin
hg19_v2_chr14_-_89021077_89021230	0.678458	SOX3_SOX2	ENST00000556564.1|PTPN21|ENSG00000070778.8|protein tyrosine phosphatase, non-receptor type 21
hg19_v2_chr15_-_49338748_49338765	0.678357	SOX3_SOX2	ENST00000559471.1|SECISBP2L|ENSG00000138593.4|SECIS binding protein 2-like
hg19_v2_chr17_-_2996290_2996290	0.678277	SOX3_SOX2	ENST00000331459.1|OR1D2|ENSG00000184166.1|olfactory receptor, family 1, subfamily D, member 2
hg19_v2_chr17_-_37353950_37353961	0.677476	SOX3_SOX2	ENST00000394310.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000394303.3|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit 	ENST00000344140.5|CACNB1|ENSG00000067191.11|calcium channel, voltage-dependent, beta 1 subunit
hg19_v2_chr18_+_32073253_32073339	0.677337	SOX3_SOX2	ENST00000283365.9|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000596745.1|DTNA|ENSG00000134769.17|dystrobrevin, alpha 	ENST00000315456.6|DTNA|ENSG00000134769.17|dystrobrevin, alpha
hg19_v2_chr4_+_144303093_144303132	0.674324	SOX3_SOX2	ENST00000505913.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr8_-_125827922_125827927	0.673682	SOX3_SOX2	ENST00000533516.1|RP11-1082L8.4|ENSG00000255491.1|RP11-1082L8.4
hg19_v2_chr5_+_140710061_140710252	0.672049	SOX3_SOX2	ENST00000517417.1|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1 	ENST00000378105.3|PCDHGA1|ENSG00000204956.4|protocadherin gamma subfamily A, 1
hg19_v2_chr22_-_32341336_32341336	0.67129	SOX3_SOX2	ENST00000248984.3|C22orf24|ENSG00000128254.9|chromosome 22 open reading frame 24
hg19_v2_chr1_+_160370344_160370406	0.670864	SOX3_SOX2	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chrX_+_147582228_147582320	0.670368	SOX3_SOX2	ENST00000342251.3|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr22_+_27053190_27053336	0.669939	SOX3_SOX2	ENST00000439738.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000422403.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000436238.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000425476.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000455640.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000451141.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000452429.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000423278.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr17_+_38171614_38171635	0.669592	SOX3_SOX2	ENST00000583218.1|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte) 	ENST00000394149.3|CSF3|ENSG00000108342.8|colony stimulating factor 3 (granulocyte)
hg19_v2_chr20_-_1165117_1165117	0.6694	SOX3_SOX2	ENST00000381894.3|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr6_+_72596406_72596454	0.669382	SOX3_SOX2	ENST00000491071.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr19_-_12267524_12267564	0.669318	SOX3_SOX2	ENST00000455799.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000355738.1|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000439556.2|ZNF625|ENSG00000257591.1|zinc finger protein 625 	ENST00000542938.1|ZNF625|ENSG00000257591.1|zinc finger protein 625
hg19_v2_chr19_+_55888186_55888204	0.668868	SOX3_SOX2	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr3_-_148804275_148804346	0.668457	SOX3_SOX2	ENST00000392912.2|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000465259.1|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000310053.5|HLTF|ENSG00000071794.11|helicase-like transcription factor 	ENST00000494055.1|HLTF|ENSG00000071794.11|helicase-like transcription factor
hg19_v2_chr21_-_45627282_45627294	0.668314	SOX3_SOX2	ENST00000423967.1|AP001058.3|ENSG00000232698.1|AP001058.3
hg19_v2_chr7_-_142583478_142583496	0.667842	SOX3_SOX2	ENST00000436401.1|TRPV6|ENSG00000165125.13|transient receptor potential cation channel, subfamily V, member 6
hg19_v2_chr1_+_202385953_202385994	0.665761	SOX3_SOX2	ENST00000466968.1|PPP1R12B|ENSG00000077157.16|protein phosphatase 1, regulatory subunit 12B
hg19_v2_chr3_-_12587055_12587055	0.665214	SOX3_SOX2	ENST00000564146.3|C3orf83|ENSG00000225526.4|chromosome 3 open reading frame 83
hg19_v2_chr5_+_175223715_175223753	0.664968	SOX3_SOX2	ENST00000515502.1|CPLX2|ENSG00000145920.10|complexin 2
hg19_v2_chr3_+_2553281_2553354	0.663701	SOX3_SOX2	ENST00000434053.1|CNTN4|ENSG00000144619.10|contactin 4
hg19_v2_chr12_+_124997766_124997772	0.663684	SOX3_SOX2	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr5_+_121647764_121647876	0.663408	SOX3_SOX2	ENST00000261368.8|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379533.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379536.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein 	ENST00000379538.3|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr17_-_982198_982386	0.66338	SOX3_SOX2	ENST00000571945.1|ABR|ENSG00000159842.10|active BCR-related 	ENST00000536794.2|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr19_+_13134772_13134846	0.6624	SOX3_SOX2	ENST00000587760.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000585575.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor)
hg19_v2_chr12_+_110152033_110152033	0.660955	SOX3_SOX2	ENST00000538780.1|FAM222A|ENSG00000139438.5|family with sequence similarity 222, member A
hg19_v2_chr19_+_57019212_57019250	0.659768	SOX3_SOX2	ENST00000308031.5|ZNF471|ENSG00000196263.3|zinc finger protein 471 	ENST00000591537.1|ZNF471|ENSG00000196263.3|zinc finger protein 471
hg19_v2_chr20_+_34042962_34043028	0.65885	SOX3_SOX2	ENST00000446710.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa 	ENST00000420564.1|CEP250|ENSG00000126001.11|centrosomal protein 250kDa
hg19_v2_chr1_+_174417095_174417212	0.654061	SOX3_SOX2	ENST00000367685.2|GPR52|ENSG00000203737.2|G protein-coupled receptor 52
hg19_v2_chr8_-_105601134_105601252	0.653999	SOX3_SOX2	ENST00000276654.5|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12 	ENST00000424843.2|LRP12|ENSG00000147650.7|low density lipoprotein receptor-related protein 12
hg19_v2_chr20_+_11898507_11898565	0.652904	SOX3_SOX2	ENST00000378226.2|BTBD3|ENSG00000132640.10|BTB (POZ) domain containing 3
hg19_v2_chr1_-_225840747_225840860	0.652846	SOX3_SOX2	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr7_+_87257854_87257931	0.652642	SOX3_SOX2	ENST00000394654.3|RUNDC3B|ENSG00000105784.11|RUN domain containing 3B
hg19_v2_chr10_+_102222798_102222798	0.65231	SOX3_SOX2	ENST00000343737.5|WNT8B|ENSG00000075290.7|wingless-type MMTV integration site family, member 8B
hg19_v2_chr17_-_39677971_39678038	0.652257	SOX3_SOX2	ENST00000393976.2|KRT15|ENSG00000171346.9|keratin 15
hg19_v2_chr4_-_76649546_76649709	0.650417	SOX3_SOX2	ENST00000508510.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000509561.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000499709.2|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2 	ENST00000511868.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr1_+_205682497_205682497	0.648857	SOX3_SOX2	ENST00000598338.1|AC119673.1|ENSG00000268313.1|AC119673.1
hg19_v2_chr7_+_11013491_11013553	0.648351	SOX3_SOX2	ENST00000403050.3|PHF14|ENSG00000106443.10|PHD finger protein 14 	ENST00000445996.2|PHF14|ENSG00000106443.10|PHD finger protein 14
hg19_v2_chr8_-_38326139_38326161	0.648217	SOX3_SOX2	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr21_+_17791648_17791775	0.647983	SOX3_SOX2	ENST00000602892.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000418813.2|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000435697.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chrX_+_140968348_140968348	0.647673	SOX3_SOX2	ENST00000536088.1|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3 	ENST00000443323.2|MAGEC3|ENSG00000165509.9|melanoma antigen family C, 3
hg19_v2_chr7_+_35840542_35840671	0.647041	SOX3_SOX2	ENST00000435235.1|SEPT7|ENSG00000122545.13|septin 7 	ENST00000399034.2|SEPT7|ENSG00000122545.13|septin 7 	ENST00000350320.6|SEPT7|ENSG00000122545.13|septin 7 	ENST00000469679.2|SEPT7|ENSG00000122545.13|septin 7
hg19_v2_chr19_-_49864746_49864780	0.646405	SOX3_SOX2	ENST00000598810.1|TEAD2|ENSG00000074219.9|TEA domain family member 2
hg19_v2_chr14_-_23446003_23446019	0.645483	SOX3_SOX2	ENST00000553911.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chrX_+_142113704_142113718	0.645405	SOX3_SOX2	ENST00000446864.1|SPANXN4|ENSG00000189326.4|SPANX family, member N4 	ENST00000370504.3|SPANXN4|ENSG00000189326.4|SPANX family, member N4
hg19_v2_chr19_+_58095501_58095628	0.644319	SOX3_SOX2	ENST00000536878.2|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597850.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000597219.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000598689.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000599456.1|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1 	ENST00000307468.4|ZIK1|ENSG00000171649.7|zinc finger protein interacting with K protein 1
hg19_v2_chr7_-_14942944_14942997	0.644063	SOX3_SOX2	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr14_+_96968802_96968895	0.642355	SOX3_SOX2	ENST00000556619.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000392990.2|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chr13_+_111893533_111893591	0.640327	SOX3_SOX2	ENST00000478679.1|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr11_+_71238313_71238313	0.640055	SOX3_SOX2	ENST00000398536.4|KRTAP5-7|ENSG00000244411.2|keratin associated protein 5-7
hg19_v2_chr3_-_52002403_52002433	0.639295	SOX3_SOX2	ENST00000490063.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000468324.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000497653.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000484633.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr1_+_40915725_40915808	0.63848	SOX3_SOX2	ENST00000484445.1|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000411995.2|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B 	ENST00000361584.3|ZFP69B|ENSG00000187801.10|ZFP69 zinc finger protein B
hg19_v2_chr12_-_64784306_64784378	0.637215	SOX3_SOX2	ENST00000543259.1|C12orf56|ENSG00000185306.8|chromosome 12 open reading frame 56
hg19_v2_chr1_-_53793584_53793719	0.636295	SOX3_SOX2	ENST00000354412.3|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000347547.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENST00000306052.6|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr14_-_80678512_80678529	0.634635	SOX3_SOX2	ENST00000553968.1|DIO2|ENSG00000211448.7|deiodinase, iodothyronine, type II
hg19_v2_chr4_-_92246457_92246457	0.632319	SOX3_SOX2	ENST00000502368.1|RP11-763F8.1|ENSG00000249049.1|Uncharacterized protein
hg19_v2_chrX_+_47093171_47093230	0.63087	SOX3_SOX2	ENST00000377078.2|USP11|ENSG00000102226.5|ubiquitin specific peptidase 11
hg19_v2_chr2_+_131513158_131513224	0.629739	SOX3_SOX2	ENST00000431758.1|AMER3|ENSG00000178171.6|APC membrane recruitment protein 3
hg19_v2_chr1_-_112046289_112046382	0.629634	SOX3_SOX2	ENST00000241356.4|ADORA3|ENSG00000121933.13|adenosine A3 receptor
hg19_v2_chr16_-_77465450_77465484	0.629539	SOX3_SOX2	ENST00000562345.1|ADAMTS18|ENSG00000140873.11|ADAM metallopeptidase with thrombospondin type 1 motif, 18
hg19_v2_chr3_+_138067666_138067745	0.626881	SOX3_SOX2	ENST00000475711.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog 	ENST00000464896.1|MRAS|ENSG00000158186.8|muscle RAS oncogene homolog
hg19_v2_chr3_-_114173654_114173696	0.626345	SOX3_SOX2	ENST00000482689.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_-_35492048_35492118	0.626092	SOX3_SOX2	ENST00000237536.4|SOGA1|ENSG00000149639.10|suppressor of glucose, autophagy associated 1
hg19_v2_chr14_+_24641820_24641937	0.624746	SOX3_SOX2	ENST00000560501.1|REC8|ENSG00000100918.8|REC8 meiotic recombination protein
hg19_v2_chr14_+_23846210_23846272	0.623975	SOX3_SOX2	ENST00000339180.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000342473.4|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000397227.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5 	ENST00000555731.1|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chrX_+_69509927_69509970	0.623495	SOX3_SOX2	ENST00000374403.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr16_+_72459838_72459857	0.623272	SOX3_SOX2	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr6_-_42981651_42981706	0.623058	SOX3_SOX2	ENST00000244711.3|MEA1|ENSG00000124733.3|male-enhanced antigen 1
hg19_v2_chr12_+_49761147_49761167	0.6228	SOX3_SOX2	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr14_+_97263641_97263764	0.622717	SOX3_SOX2	ENST00000216639.3|VRK1|ENSG00000100749.3|vaccinia related kinase 1
hg19_v2_chr20_-_50419055_50419066	0.622621	SOX3_SOX2	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr3_-_171489085_171489158	0.620991	SOX3_SOX2	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr3_-_48700310_48700348	0.620399	SOX3_SOX2	ENST00000164024.4|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3 	ENST00000544264.1|CELSR3|ENSG00000008300.10|cadherin, EGF LAG seven-pass G-type receptor 3
hg19_v2_chr11_+_65265141_65265306	0.619992	SOX3_SOX2	ENST00000534336.1|MALAT1|ENSG00000251562.3|metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
hg19_v2_chr10_+_180643_180764	0.619273	SOX3_SOX2	ENST00000509513.2|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397959.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr1_+_201592013_201592013	0.619013	SOX3_SOX2	ENST00000593583.1|AC096677.1|ENSG00000269690.1|Uncharacterized protein ENSP00000471857
hg19_v2_chr11_-_102714534_102714534	0.618615	SOX3_SOX2	ENST00000299855.5|MMP3|ENSG00000149968.7|matrix metallopeptidase 3 (stromelysin 1, progelatinase)
hg19_v2_chr20_+_1184098_1184098	0.617231	SOX3_SOX2	ENST00000400633.1|C20orf202|ENSG00000215595.1|chromosome 20 open reading frame 202
hg19_v2_chr14_+_23845995_23846017	0.615632	SOX3_SOX2	ENST00000359320.3|CMTM5|ENSG00000166091.15|CKLF-like MARVEL transmembrane domain containing 5
hg19_v2_chrX_+_114827818_114827842	0.615395	SOX3_SOX2	ENST00000420625.2|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr8_-_12612962_12613049	0.615362	SOX3_SOX2	ENST00000398246.3|LONRF1|ENSG00000154359.8|LON peptidase N-terminal domain and ring finger 1
hg19_v2_chr17_-_15469590_15469590	0.614848	SOX3_SOX2	ENST00000312127.2|CDRT1|ENSG00000181464.2|CMT duplicated region transcript 1; Uncharacterized protein
hg19_v2_chr16_+_14396121_14396145	0.613398	SOX3_SOX2	ENST00000570945.1|RP11-65J21.3|ENSG00000262454.1|RP11-65J21.3
hg19_v2_chr19_+_47105309_47105329	0.613229	SOX3_SOX2	ENST00000599839.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta) 	ENST00000596362.1|CALM3|ENSG00000160014.12|calmodulin 3 (phosphorylase kinase, delta)
hg19_v2_chr19_+_31658405_31658422	0.613018	SOX3_SOX2	ENST00000589511.1|CTC-439O9.3|ENSG00000267777.1|CTC-439O9.3
hg19_v2_chr2_-_180129484_180129574	0.61277	SOX3_SOX2	ENST00000428443.3|SESTD1|ENSG00000187231.9|SEC14 and spectrin domains 1
hg19_v2_chrX_-_128657457_128657477	0.612695	SOX3_SOX2	ENST00000371121.3|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371123.1|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 	ENST00000371122.4|SMARCA1|ENSG00000102038.11|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
hg19_v2_chr8_-_93115445_93115462	0.612675	SOX3_SOX2	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_-_117628333_117628339	0.611853	SOX3_SOX2	ENST00000427718.2|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr15_+_32322685_32322701	0.610742	SOX3_SOX2	ENST00000454250.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal) 	ENST00000306901.3|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr15_-_65398647_65398697	0.60934	SOX3_SOX2	ENST00000502113.2|UBAP1L|ENSG00000246922.4|ubiquitin associated protein 1-like
hg19_v2_chr4_-_159080806_159080833	0.607232	SOX3_SOX2	ENST00000590648.1|FAM198B|ENSG00000164125.11|family with sequence similarity 198, member B
hg19_v2_chr9_-_115819039_115819082	0.607176	SOX3_SOX2	ENST00000555206.1|ZFP37|ENSG00000136866.9|ZFP37 zinc finger protein
hg19_v2_chr17_-_1083078_1083294	0.607098	SOX3_SOX2	ENST00000574266.1|ABR|ENSG00000159842.10|active BCR-related 	ENST00000302538.5|ABR|ENSG00000159842.10|active BCR-related
hg19_v2_chr5_-_102455801_102455855	0.606205	SOX3_SOX2	ENST00000508629.1|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1 	ENST00000399004.2|GIN1|ENSG00000145723.12|gypsy retrotransposon integrase 1
hg19_v2_chr18_-_61329118_61329197	0.605806	SOX3_SOX2	ENST00000332821.8|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3 	ENST00000283752.5|SERPINB3|ENSG00000057149.10|serpin peptidase inhibitor, clade B (ovalbumin), member 3
hg19_v2_chr17_+_57642886_57643006	0.603621	SOX3_SOX2	ENST00000251241.4|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000451169.2|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000425628.3|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000584385.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40 	ENST00000580030.1|DHX40|ENSG00000108406.5|DEAH (Asp-Glu-Ala-His) box polypeptide 40
hg19_v2_chrX_-_101718085_101718195	0.601771	SOX3_SOX2	ENST00000372750.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B 	ENST00000372752.1|NXF2B|ENSG00000185945.9|nuclear RNA export factor 2B
hg19_v2_chr6_+_155443048_155443094	0.600896	SOX3_SOX2	ENST00000535583.1|TIAM2|ENSG00000146426.13|T-cell lymphoma invasion and metastasis 2
hg19_v2_chr12_+_6982725_6982736	0.597379	SOX3_SOX2	ENST00000433346.1|LRRC23|ENSG00000010626.10|leucine rich repeat containing 23
hg19_v2_chr11_+_64059464_64059482	0.595836	SOX3_SOX2	ENST00000394525.2|KCNK4|ENSG00000182450.8|potassium channel, subfamily K, member 4
hg19_v2_chr8_-_22550691_22550717	0.595791	SOX3_SOX2	ENST00000519492.1|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr15_-_96607616_96607655	0.595285	SOX3_SOX2	ENST00000558860.1|RP11-236L14.1|ENSG00000259702.1|RP11-236L14.1
hg19_v2_chr2_+_9778872_9778917	0.595064	SOX3_SOX2	ENST00000478468.1|RP11-521D12.1|ENSG00000240687.1|RP11-521D12.1
hg19_v2_chr3_-_46786245_46786245	0.593739	SOX3_SOX2	ENST00000442359.2|PRSS45|ENSG00000188086.8|protease, serine, 45
hg19_v2_chr3_+_35721182_35721277	0.59363	SOX3_SOX2	ENST00000413378.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa 	ENST00000417925.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr7_+_55980331_55980331	0.592497	SOX3_SOX2	ENST00000429591.2|ZNF713|ENSG00000178665.10|zinc finger protein 713
hg19_v2_chr5_-_67829357_67829382	0.592028	SOX3_SOX2	ENST00000515199.1|CTC-537E7.2|ENSG00000248359.1|CTC-537E7.2
hg19_v2_chr17_-_36831156_36831187	0.591741	SOX3_SOX2	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr20_-_4795747_4795769	0.59102	SOX3_SOX2	ENST00000379376.2|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr1_-_95392635_95392834	0.590731	SOX3_SOX2	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr5_-_172755056_172755219	0.590345	SOX3_SOX2	ENST00000520648.1|STC2|ENSG00000113739.6|stanniocalcin 2
hg19_v2_chr1_-_99999571_99999585	0.5879	SOX3_SOX2	ENST00000438829.2|RP11-413P11.1|ENSG00000224445.2|RP11-413P11.1
hg19_v2_chr6_-_44400720_44400720	0.586664	SOX3_SOX2	ENST00000595057.1|AL133262.1|ENSG00000267849.1|AL133262.1
hg19_v2_chr2_+_27760247_27760261	0.585857	SOX3_SOX2	ENST00000447166.1|AC109829.1|ENSG00000233438.1|Uncharacterized protein
hg19_v2_chr15_+_69373184_69373202	0.585699	SOX3_SOX2	ENST00000558147.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277 	ENST00000440444.1|LINC00277|ENSG00000212766.5|long intergenic non-protein coding RNA 277
hg19_v2_chr4_-_186733363_186733392	0.584165	SOX3_SOX2	ENST00000393523.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000393528.3|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000449407.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr6_+_44215603_44215666	0.583803	SOX3_SOX2	ENST00000371554.1|HSP90AB1|ENSG00000096384.15|heat shock protein 90kDa alpha (cytosolic), class B member 1
hg19_v2_chr14_-_23446021_23446070	0.583668	SOX3_SOX2	ENST00000553592.1|AJUBA|ENSG00000129474.11|ajuba LIM protein
hg19_v2_chr18_-_61311485_61311532	0.583609	SOX3_SOX2	ENST00000436264.1|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000356424.6|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4 	ENST00000341074.5|SERPINB4|ENSG00000206073.6|serpin peptidase inhibitor, clade B (ovalbumin), member 4
hg19_v2_chr15_+_71389281_71389306	0.582548	SOX3_SOX2	ENST00000355327.3|THSD4|ENSG00000187720.10|thrombospondin, type I, domain containing 4
hg19_v2_chr10_+_99349450_99349458	0.582093	SOX3_SOX2	ENST00000370640.3|C10orf62|ENSG00000203942.3|chromosome 10 open reading frame 62
hg19_v2_chr1_+_97188188_97188273	0.582027	SOX3_SOX2	ENST00000541987.1|PTBP2|ENSG00000117569.14|polypyrimidine tract binding protein 2
hg19_v2_chr1_+_160147176_160147201	0.581136	SOX3_SOX2	ENST00000470705.1|ATP1A4|ENSG00000132681.12|ATPase, Na+/K+ transporting, alpha 4 polypeptide
hg19_v2_chr9_-_138799070_138799284	0.580026	SOX3_SOX2	ENST00000389532.4|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1 	ENST00000409386.3|CAMSAP1|ENSG00000130559.14|calmodulin regulated spectrin-associated protein 1
hg19_v2_chr17_-_27038063_27038117	0.579623	SOX3_SOX2	ENST00000439862.3|PROCA1|ENSG00000167525.9|protein interacting with cyclin A1
hg19_v2_chr10_-_127371675_127371716	0.579345	SOX3_SOX2	ENST00000532135.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000526819.1|TEX36|ENSG00000175018.8|testis expressed 36 	ENST00000368821.3|TEX36|ENSG00000175018.8|testis expressed 36
hg19_v2_chr12_+_75728419_75728476	0.579076	SOX3_SOX2	ENST00000378695.4|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1 	ENST00000312442.2|GLIPR1L1|ENSG00000173401.5|GLI pathogenesis-related 1 like 1
hg19_v2_chr3_+_112930946_112931042	0.578463	SOX3_SOX2	ENST00000462425.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr11_+_125034605_125034636	0.578096	SOX3_SOX2	ENST00000527238.1|PKNOX2|ENSG00000165495.11|PBX/knotted 1 homeobox 2
hg19_v2_chr16_+_57653854_57653968	0.577494	SOX3_SOX2	ENST00000568908.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568909.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000566778.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000561988.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr4_+_144312659_144312668	0.57715	SOX3_SOX2	ENST00000509992.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr3_+_197185270_197185281	0.575818	SOX3_SOX2	ENST00000420213.1|AC128709.2|ENSG00000237167.1|AC128709.2
hg19_v2_chr11_-_105892937_105893130	0.5753	SOX3_SOX2	ENST00000301919.4|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000534458.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530108.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils 	ENST00000530788.1|MSANTD4|ENSG00000170903.6|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
hg19_v2_chr1_-_46598284_46598356	0.574444	SOX3_SOX2	ENST00000423209.1|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma) 	ENST00000262741.5|PIK3R3|ENSG00000117461.10|phosphoinositide-3-kinase, regulatory subunit 3 (gamma)
hg19_v2_chr8_+_124194875_124194921	0.574442	SOX3_SOX2	ENST00000522648.1|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A 	ENST00000276699.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr13_+_113030625_113030634	0.572661	SOX3_SOX2	ENST00000283550.3|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr12_+_133707570_133707570	0.571889	SOX3_SOX2	ENST00000416488.1|ZNF268|ENSG00000090612.16|zinc finger protein 268 	ENST00000540096.2|CTD-2140B24.4|ENSG00000256825.4|Zinc finger protein 268
hg19_v2_chr2_-_74875432_74875466	0.570211	SOX3_SOX2	ENST00000536235.1|M1AP|ENSG00000159374.13|meiosis 1 associated protein 	ENST00000421985.1|M1AP|ENSG00000159374.13|meiosis 1 associated protein
hg19_v2_chr7_-_140340576_140340622	0.569335	SOX3_SOX2	ENST00000275884.6|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A 	ENST00000475837.1|DENND2A|ENSG00000146966.8|DENN/MADD domain containing 2A
hg19_v2_chr13_+_24144796_24144809	0.567812	SOX3_SOX2	ENST00000403372.2|TNFRSF19|ENSG00000127863.11|tumor necrosis factor receptor superfamily, member 19
hg19_v2_chr4_-_187647773_187647876	0.56549	SOX3_SOX2	ENST00000509647.1|FAT1|ENSG00000083857.9|FAT atypical cadherin 1
hg19_v2_chr5_-_9712312_9712490	0.564917	SOX3_SOX2	ENST00000506620.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1 	ENST00000606744.1|CTD-2143L24.1|ENSG00000249781.2|CTD-2143L24.1	ENST00000514078.1|TAS2R1|ENSG00000169777.5|taste receptor, type 2, member 1
hg19_v2_chr2_-_106015491_106015518	0.564174	SOX3_SOX2	ENST00000408995.1|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000393353.3|FHL2|ENSG00000115641.14|four and a half LIM domains 2 	ENST00000322142.8|FHL2|ENSG00000115641.14|four and a half LIM domains 2
hg19_v2_chr7_-_8302164_8302196	0.562778	SOX3_SOX2	ENST00000447326.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa 	ENST00000406470.2|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr15_-_88799948_88799978	0.562316	SOX3_SOX2	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr17_+_40985407_40985513	0.56202	SOX3_SOX2	ENST00000586114.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000590720.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000585805.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000541124.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000441946.2|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000591152.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000589469.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000293362.3|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) 	ENST00000592169.1|PSME3|ENSG00000131467.6|proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki)
hg19_v2_chr17_-_19364269_19364308	0.561817	SOX3_SOX2	ENST00000421796.2|AC004448.5|ENSG00000235979.4|AC004448.5	ENST00000585389.1|AC004448.5|ENSG00000235979.4|AC004448.5	ENST00000609249.1|AC004448.5|ENSG00000235979.4|AC004448.5
hg19_v2_chr8_-_42358742_42358787	0.561233	SOX3_SOX2	ENST00000517366.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr5_-_124080203_124080258	0.559396	SOX3_SOX2	ENST00000504926.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr12_+_51818749_51818901	0.558787	SOX3_SOX2	ENST00000514353.3|SLC4A8|ENSG00000050438.12|solute carrier family 4, sodium bicarbonate cotransporter, member 8
hg19_v2_chr5_-_16742330_16742344	0.557147	SOX3_SOX2	ENST00000505695.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000427430.2|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr19_-_37958086_37958150	0.555939	SOX3_SOX2	ENST00000592490.1|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000392149.2|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr2_-_197791441_197791525	0.555611	SOX3_SOX2	ENST00000409475.1|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000354764.4|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1 	ENST00000374738.3|PGAP1|ENSG00000197121.10|post-GPI attachment to proteins 1
hg19_v2_chr12_-_58027138_58027159	0.555452	SOX3_SOX2	ENST00000341156.4|B4GALNT1|ENSG00000135454.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
hg19_v2_chr3_+_123813543_123813587	0.55531	SOX3_SOX2	ENST00000360013.3|KALRN|ENSG00000160145.11|kalirin, RhoGEF kinase
hg19_v2_chrX_+_114827851_114827872	0.55492	SOX3_SOX2	ENST00000539310.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr8_+_68864330_68864361	0.554163	SOX3_SOX2	ENST00000288368.4|PREX2|ENSG00000046889.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
hg19_v2_chr15_+_25200108_25200161	0.553584	SOX3_SOX2	ENST00000577949.1|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000338094.6|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein  	ENST00000579070.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000577565.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000338327.4|SNURF|ENSG00000273173.1|SNRPN upstream reading frame protein
hg19_v2_chr3_+_35721130_35721147	0.553463	SOX3_SOX2	ENST00000432450.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr2_-_239149300_239149321	0.551955	SOX3_SOX2	ENST00000436051.1|HES6|ENSG00000144485.6|hes family bHLH transcription factor 6
hg19_v2_chr2_+_242127924_242128117	0.55135	SOX3_SOX2	ENST00000402530.3|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000274979.8|ANO7|ENSG00000146205.9|anoctamin 7 	ENST00000402430.3|ANO7|ENSG00000146205.9|anoctamin 7
hg19_v2_chr8_+_24151553_24151590	0.548668	SOX3_SOX2	ENST00000265769.4|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000540823.1|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28 	ENST00000397649.3|ADAM28|ENSG00000042980.8|ADAM metallopeptidase domain 28
hg19_v2_chr17_+_61851504_61851570	0.54789	SOX3_SOX2	ENST00000359353.5|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42 	ENST00000389924.2|DDX42|ENSG00000198231.8|DEAD (Asp-Glu-Ala-Asp) box helicase 42
hg19_v2_chr4_+_175839551_175839567	0.546841	SOX3_SOX2	ENST00000404450.4|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29 	ENST00000514159.1|ADAM29|ENSG00000168594.11|ADAM metallopeptidase domain 29
hg19_v2_chr6_-_167040731_167040745	0.546173	SOX3_SOX2	ENST00000265678.4|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr8_+_12803176_12803195	0.545672	SOX3_SOX2	ENST00000524591.2|KIAA1456|ENSG00000250305.4|KIAA1456
hg19_v2_chr12_-_49582837_49582875	0.545329	SOX3_SOX2	ENST00000547939.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000546918.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000552924.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr3_+_112930306_112930338	0.545288	SOX3_SOX2	ENST00000495514.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chrX_-_77395186_77395203	0.544239	SOX3_SOX2	ENST00000341864.5|TAF9B|ENSG00000187325.4|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
hg19_v2_chr9_+_15422702_15422883	0.543936	SOX3_SOX2	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr1_-_84326229_84326241	0.542763	SOX3_SOX2	ENST00000457273.1|RP11-475O6.1|ENSG00000233008.1|RP11-475O6.1
hg19_v2_chr5_+_102455853_102455961	0.542648	SOX3_SOX2	ENST00000515845.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000321521.9|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2 	ENST00000507921.1|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr7_+_105603738_105603753	0.540686	SOX3_SOX2	ENST00000541203.1|CDHR3|ENSG00000128536.11|cadherin-related family member 3
hg19_v2_chr11_-_8795787_8795848	0.540375	SOX3_SOX2	ENST00000528196.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5 	ENST00000533681.1|ST5|ENSG00000166444.13|suppression of tumorigenicity 5
hg19_v2_chr2_+_102953608_102953727	0.540246	SOX3_SOX2	ENST00000311734.2|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1 	ENST00000409584.1|IL1RL1|ENSG00000115602.12|interleukin 1 receptor-like 1
hg19_v2_chr18_+_56531584_56531646	0.539899	SOX3_SOX2	ENST00000590287.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr14_+_96968707_96968788	0.539766	SOX3_SOX2	ENST00000216277.8|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557320.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha 	ENST00000557471.1|PAPOLA|ENSG00000090060.13|poly(A) polymerase alpha
hg19_v2_chrX_-_140786896_140786896	0.539689	SOX3_SOX2	ENST00000370515.3|SPANXD|ENSG00000196406.4|SPANX family, member D
hg19_v2_chr16_+_4606347_4606491	0.538674	SOX3_SOX2	ENST00000444310.4|C16orf96|ENSG00000205832.7|chromosome 16 open reading frame 96
hg19_v2_chr8_-_97247759_97247862	0.537646	SOX3_SOX2	ENST00000518406.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000523920.1|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein 	ENST00000287022.5|UQCRB|ENSG00000156467.5|ubiquinol-cytochrome c reductase binding protein
hg19_v2_chr11_+_125496619_125496646	0.536997	SOX3_SOX2	ENST00000532669.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000278916.3|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr7_-_88425025_88425046	0.535345	SOX3_SOX2	ENST00000297203.2|C7orf62|ENSG00000164645.2|chromosome 7 open reading frame 62
hg19_v2_chr14_-_45603657_45603732	0.532277	SOX3_SOX2	ENST00000396062.3|FKBP3|ENSG00000100442.6|FK506 binding protein 3, 25kDa
hg19_v2_chrX_+_44703249_44703273	0.530945	SOX3_SOX2	ENST00000339042.4|DUSP21|ENSG00000189037.6|dual specificity phosphatase 21
hg19_v2_chr4_+_164265035_164265091	0.530751	SOX3_SOX2	ENST00000338566.3|NPY5R|ENSG00000164129.7|neuropeptide Y receptor Y5
hg19_v2_chr19_+_11649532_11649674	0.530663	SOX3_SOX2	ENST00000252456.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000592923.1|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle 	ENST00000535659.2|CNN1|ENSG00000130176.3|calponin 1, basic, smooth muscle
hg19_v2_chr17_+_79031415_79031560	0.529523	SOX3_SOX2	ENST00000572073.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2 	ENST00000573677.1|BAIAP2|ENSG00000175866.11|BAI1-associated protein 2
hg19_v2_chr2_-_9770706_9770753	0.527355	SOX3_SOX2	ENST00000381844.4|YWHAQ|ENSG00000134308.9|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta
hg19_v2_chr12_+_133613878_133613924	0.527337	SOX3_SOX2	ENST00000392319.2|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000543758.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr2_+_30569506_30569525	0.527283	SOX3_SOX2	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr2_+_74685527_74685599	0.527129	SOX3_SOX2	ENST00000393972.3|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000409737.1|WBP1|ENSG00000239779.2|WW domain binding protein 1 	ENST00000428943.1|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chr12_+_133613937_133613994	0.527125	SOX3_SOX2	ENST00000539354.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000542874.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000438628.2|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr20_-_44176060_44176067	0.526963	SOX3_SOX2	ENST00000354280.4|EPPIN|ENSG00000101448.9|epididymal peptidase inhibitor 	ENST00000504988.1|EPPIN-WFDC6|ENSG00000249139.1|EPPIN-WFDC6 readthrough
hg19_v2_chr7_+_141463897_141463897	0.52655	SOX3_SOX2	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr9_-_125693757_125693818	0.525044	SOX3_SOX2	ENST00000373656.3|ZBTB26|ENSG00000171448.8|zinc finger and BTB domain containing 26
hg19_v2_chr6_-_41040268_41040353	0.524769	SOX3_SOX2	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr12_-_117628253_117628308	0.521991	SOX3_SOX2	ENST00000330622.5|FBXO21|ENSG00000135108.10|F-box protein 21
hg19_v2_chr1_-_231004220_231004399	0.521218	SOX3_SOX2	ENST00000366663.5|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr5_-_111093167_111093252	0.52085	SOX3_SOX2	ENST00000446294.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000419114.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr16_+_57653989_57654022	0.52044	SOX3_SOX2	ENST00000567835.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000569372.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000563548.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000562003.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr4_+_144258021_144258052	0.51966	SOX3_SOX2	ENST00000262994.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr4_-_83351294_83351417	0.519599	SOX3_SOX2	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr12_-_12491608_12491640	0.518879	SOX3_SOX2	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr19_-_48673465_48673543	0.518334	SOX3_SOX2	ENST00000598938.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr12_-_24097236_24097286	0.518276	SOX3_SOX2	ENST00000538083.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr19_+_29374337_29374443	0.517445	SOX3_SOX2	ENST00000591285.1|AC011524.1|ENSG00000267528.1|AC011524.1
hg19_v2_chr22_-_28197486_28197544	0.516403	SOX3_SOX2	ENST00000302326.4|MN1|ENSG00000169184.5|meningioma (disrupted in balanced translocation) 1
hg19_v2_chr9_-_88896977_88897023	0.51374	SOX3_SOX2	ENST00000311534.6|ISCA1|ENSG00000135070.9|iron-sulfur cluster assembly 1
hg19_v2_chr16_-_56223480_56223503	0.513148	SOX3_SOX2	ENST00000565155.1|RP11-461O7.1|ENSG00000246379.2|RP11-461O7.1
hg19_v2_chr7_+_18535321_18535343	0.51263	SOX3_SOX2	ENST00000413380.1|HDAC9|ENSG00000048052.17|histone deacetylase 9 	ENST00000430454.1|HDAC9|ENSG00000048052.17|histone deacetylase 9
hg19_v2_chr1_-_9970227_9970356	0.512386	SOX3_SOX2	ENST00000377263.1|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr3_-_49466686_49466764	0.511357	SOX3_SOX2	ENST00000273598.3|NICN1|ENSG00000145029.7|nicolin 1 	ENST00000436744.2|NICN1|ENSG00000145029.7|nicolin 1
hg19_v2_chrX_-_110655306_110655330	0.510636	SOX3_SOX2	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr8_-_65711310_65711324	0.510578	SOX3_SOX2	ENST00000310193.3|CYP7B1|ENSG00000172817.3|cytochrome P450, family 7, subfamily B, polypeptide 1
hg19_v2_chr20_+_60698180_60698208	0.510159	SOX3_SOX2	ENST00000361670.3|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr17_+_9728828_9728868	0.510145	SOX3_SOX2	ENST00000262441.5|GLP2R|ENSG00000065325.8|glucagon-like peptide 2 receptor
hg19_v2_chr14_+_96343133_96343178	0.504694	SOX3_SOX2	ENST00000554321.1|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr13_-_25496926_25497034	0.50469	SOX3_SOX2	ENST00000545981.1|CENPJ|ENSG00000151849.10|centromere protein J 	ENST00000381884.4|CENPJ|ENSG00000151849.10|centromere protein J
hg19_v2_chr11_+_73882311_73882413	0.504233	SOX3_SOX2	ENST00000398427.4|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1 	ENST00000544401.1|PPME1|ENSG00000214517.4|protein phosphatase methylesterase 1
hg19_v2_chr1_-_214638146_214638146	0.504121	SOX3_SOX2	ENST00000543945.1|PTPN14|ENSG00000152104.7|protein tyrosine phosphatase, non-receptor type 14
hg19_v2_chr5_+_34656450_34656523	0.502342	SOX3_SOX2	ENST00000514527.1|RAI14|ENSG00000039560.9|retinoic acid induced 14
hg19_v2_chr17_+_63133526_63133566	0.501314	SOX3_SOX2	ENST00000443584.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr3_+_57094469_57094469	0.500918	SOX3_SOX2	ENST00000334325.1|SPATA12|ENSG00000186451.1|spermatogenesis associated 12
hg19_v2_chr9_-_117880477_117880536	0.50052	SOX3_SOX2	ENST00000534839.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000340094.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000535648.1|TNC|ENSG00000041982.10|tenascin C 	ENST00000346706.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000345230.3|TNC|ENSG00000041982.10|tenascin C 	ENST00000350763.4|TNC|ENSG00000041982.10|tenascin C
hg19_v2_chr9_-_103115135_103115183	0.499682	SOX3_SOX2	ENST00000537512.1|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr14_-_21994337_21994442	0.499475	SOX3_SOX2	ENST00000537235.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2 	ENST00000450879.2|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr6_+_29429217_29429217	0.499359	SOX3_SOX2	ENST00000396792.2|OR2H1|ENSG00000204688.5|olfactory receptor, family 2, subfamily H, member 1
hg19_v2_chr18_+_13726645_13726768	0.499262	SOX3_SOX2	ENST00000543302.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000383314.2|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000535051.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000592764.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase 	ENST00000591746.1|RNMT|ENSG00000101654.13|RNA (guanine-7-) methyltransferase
hg19_v2_chr4_+_156680143_156680152	0.499083	SOX3_SOX2	ENST00000505154.1|GUCY1B3|ENSG00000061918.8|guanylate cyclase 1, soluble, beta 3
hg19_v2_chr10_-_30918669_30918691	0.495803	SOX3_SOX2	ENST00000375318.2|LYZL2|ENSG00000151033.7|lysozyme-like 2
hg19_v2_chr19_+_13135386_13135435	0.493494	SOX3_SOX2	ENST00000360105.4|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000588228.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor) 	ENST00000591028.1|NFIX|ENSG00000008441.12|nuclear factor I/X (CCAAT-binding transcription factor)
hg19_v2_chr19_+_56159509_56159643	0.491689	SOX3_SOX2	ENST00000586790.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000591578.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000588740.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chr5_-_111093081_111093111	0.491441	SOX3_SOX2	ENST00000453526.2|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000509427.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr11_+_20044600_20044636	0.490266	SOX3_SOX2	ENST00000311043.8|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr19_+_38880252_38880252	0.49015	SOX3_SOX2	ENST00000586301.1|SPRED3|ENSG00000188766.8|sprouty-related, EVH1 domain containing 3
hg19_v2_chr1_-_217311090_217311097	0.489934	SOX3_SOX2	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr9_+_27524283_27524312	0.489672	SOX3_SOX2	ENST00000276943.2|IFNK|ENSG00000147896.3|interferon, kappa
hg19_v2_chr4_-_57687847_57687911	0.488811	SOX3_SOX2	ENST00000504762.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000248701.4|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor) 	ENST00000506738.1|SPINK2|ENSG00000128040.6|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)
hg19_v2_chr9_-_34620440_34620515	0.487938	SOX3_SOX2	ENST00000421919.1|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378911.3|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000477738.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000341694.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000259632.7|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378913.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000378916.4|DCTN3|ENSG00000137100.11|dynactin 3 (p22) 	ENST00000447983.2|DCTN3|ENSG00000137100.11|dynactin 3 (p22)
hg19_v2_chr5_-_140700322_140700358	0.487172	SOX3_SOX2	ENST00000313368.5|TAF7|ENSG00000178913.5|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa
hg19_v2_chr17_-_30669138_30669208	0.487093	SOX3_SOX2	ENST00000225805.4|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000577809.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr2_-_43266680_43266701	0.487012	SOX3_SOX2	ENST00000425212.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000422351.1|AC016735.2|ENSG00000231826.1|AC016735.2	ENST00000449766.1|AC016735.2|ENSG00000231826.1|AC016735.2
hg19_v2_chr14_+_67707826_67707994	0.486663	SOX3_SOX2	ENST00000261681.4|MPP5|ENSG00000072415.4|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
hg19_v2_chr6_-_42419649_42419789	0.486401	SOX3_SOX2	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr9_+_125795788_125795957	0.485896	SOX3_SOX2	ENST00000373643.5|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr16_+_68573116_68573228	0.484658	SOX3_SOX2	ENST00000570495.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000563169.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000564323.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000562156.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573685.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr10_+_106028923_106028956	0.484277	SOX3_SOX2	ENST00000338595.2|GSTO2|ENSG00000065621.10|glutathione S-transferase omega 2
hg19_v2_chr14_-_88459503_88459615	0.482713	SOX3_SOX2	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr8_+_124194752_124194835	0.482206	SOX3_SOX2	ENST00000318462.6|FAM83A|ENSG00000147689.12|family with sequence similarity 83, member A
hg19_v2_chr14_+_58754751_58754751	0.482067	SOX3_SOX2	ENST00000598233.1|AL132989.1|ENSG00000268466.1|AL132989.1
hg19_v2_chr6_+_125540951_125540991	0.481528	SOX3_SOX2	ENST00000524679.1|TPD52L1|ENSG00000111907.16|tumor protein D52-like 1
hg19_v2_chr11_-_61582579_61582763	0.481384	SOX3_SOX2	ENST00000539419.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545245.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000545405.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1 	ENST00000542506.1|FADS1|ENSG00000149485.12|fatty acid desaturase 1
hg19_v2_chr10_-_61900762_61900779	0.480752	SOX3_SOX2	ENST00000355288.2|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr17_-_48072574_48072597	0.479946	SOX3_SOX2	ENST00000434704.2|DLX3|ENSG00000064195.7|distal-less homeobox 3
hg19_v2_chr16_-_34740829_34740837	0.479269	SOX3_SOX2	ENST00000562591.1|RP11-80F22.15|ENSG00000260857.2|RP11-80F22.15
hg19_v2_chr12_+_48919415_48919415	0.47881	SOX3_SOX2	ENST00000310194.1|OR8S1|ENSG00000197376.2|olfactory receptor, family 8, subfamily S, member 1
hg19_v2_chr6_-_88001706_88001706	0.478449	SOX3_SOX2	ENST00000369576.2|GJB7|ENSG00000164411.6|gap junction protein, beta 7, 25kDa
hg19_v2_chr7_+_112262421_112262447	0.476767	SOX3_SOX2	ENST00000453459.1|AC002463.3|ENSG00000223646.1|AC002463.3
hg19_v2_chr14_-_103434869_103435038	0.476581	SOX3_SOX2	ENST00000559043.1|CDC42BPB|ENSG00000198752.5|CDC42 binding protein kinase beta (DMPK-like)
hg19_v2_chr7_-_107643567_107643657	0.475792	SOX3_SOX2	ENST00000393559.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000439976.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000393560.1|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr11_-_82708435_82708472	0.475629	SOX3_SOX2	ENST00000525117.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family 	ENST00000532548.1|RAB30|ENSG00000137502.5|RAB30, member RAS oncogene family
hg19_v2_chr1_+_172389821_172389833	0.475432	SOX3_SOX2	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr5_-_111093759_111093915	0.474252	SOX3_SOX2	ENST00000509979.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000513100.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000508161.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000455559.2|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr2_+_58655520_58655570	0.47411	SOX3_SOX2	ENST00000455219.3|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000449448.2|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chrX_+_69509870_69509908	0.474007	SOX3_SOX2	ENST00000374388.3|KIF4A|ENSG00000090889.10|kinesin family member 4A
hg19_v2_chr15_+_22368478_22368478	0.473449	SOX3_SOX2	ENST00000332663.2|OR4M2|ENSG00000182974.2|olfactory receptor, family 4, subfamily M, member 2
hg19_v2_chr5_+_79615790_79615827	0.473163	SOX3_SOX2	ENST00000296739.4|SPZ1|ENSG00000164299.5|spermatogenic leucine zipper 1
hg19_v2_chr2_+_168149569_168149681	0.473113	SOX3_SOX2	ENST00000442316.1|AC074363.1|ENSG00000228222.1|AC074363.1
hg19_v2_chr11_+_63753883_63753929	0.472934	SOX3_SOX2	ENST00000538426.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1 	ENST00000543004.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr10_-_72545151_72545158	0.472057	SOX3_SOX2	ENST00000299290.1|TBATA|ENSG00000166220.8|thymus, brain and testes associated
hg19_v2_chr10_+_115511213_115511272	0.471335	SOX3_SOX2	ENST00000361048.1|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr8_-_38326119_38326134	0.47113	SOX3_SOX2	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr4_+_144258288_144258353	0.470762	SOX3_SOX2	ENST00000514639.1|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr19_+_57640011_57640011	0.468757	SOX3_SOX2	ENST00000598197.1|USP29|ENSG00000131864.6|ubiquitin specific peptidase 29
hg19_v2_chr13_-_95131923_95131944	0.467267	SOX3_SOX2	ENST00000377028.5|DCT|ENSG00000080166.11|dopachrome tautomerase 	ENST00000446125.1|DCT|ENSG00000080166.11|dopachrome tautomerase
hg19_v2_chr2_-_169769787_169769861	0.466332	SOX3_SOX2	ENST00000451987.1|SPC25|ENSG00000152253.4|SPC25, NDC80 kinetochore complex component
hg19_v2_chr21_-_34542541_34542541	0.46627	SOX3_SOX2	ENST00000451980.2|C21orf54|ENSG00000229086.3|chromosome 21 open reading frame 54
hg19_v2_chr2_-_55276320_55276334	0.466204	SOX3_SOX2	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr11_-_107729887_107729927	0.465771	SOX3_SOX2	ENST00000525815.1|SLC35F2|ENSG00000110660.10|solute carrier family 35, member F2
hg19_v2_chr5_-_179780312_179780387	0.465757	SOX3_SOX2	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr12_+_65996599_65996667	0.465307	SOX3_SOX2	ENST00000539116.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3	ENST00000541391.1|RP11-221N13.3|ENSG00000256268.1|RP11-221N13.3
hg19_v2_chr15_+_92937058_92937133	0.46419	SOX3_SOX2	ENST00000268164.3|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
hg19_v2_chr3_+_42947600_42947680	0.463985	SOX3_SOX2	ENST00000328199.6|ZNF662|ENSG00000182983.10|zinc finger protein 662 	ENST00000541208.1|ZNF662|ENSG00000182983.10|zinc finger protein 662
hg19_v2_chr14_+_21467414_21467463	0.463574	SOX3_SOX2	ENST00000554422.1|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2 	ENST00000298681.4|SLC39A2|ENSG00000165794.5|solute carrier family 39 (zinc transporter), member 2
hg19_v2_chr4_-_28404486_28404533	0.463025	SOX3_SOX2	ENST00000515720.1|RP11-180C1.1|ENSG00000250038.1|Uncharacterized protein
hg19_v2_chr11_-_58611957_58611999	0.461998	SOX3_SOX2	ENST00000532258.1|GLYATL2|ENSG00000156689.2|glycine-N-acyltransferase-like 2
hg19_v2_chr15_+_25200074_25200105	0.461789	SOX3_SOX2	ENST00000390687.4|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000584968.1|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000346403.6|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N 	ENST00000554227.2|SNRPN|ENSG00000128739.16|small nuclear ribonucleoprotein polypeptide N
hg19_v2_chr19_+_58694742_58694863	0.461178	SOX3_SOX2	ENST00000597528.1|ZNF274|ENSG00000171606.13|zinc finger protein 274 	ENST00000594839.1|ZNF274|ENSG00000171606.13|zinc finger protein 274
hg19_v2_chr10_-_71332994_71332994	0.460573	SOX3_SOX2	ENST00000242462.4|NEUROG3|ENSG00000122859.4|neurogenin 3
hg19_v2_chr10_+_14920843_14920921	0.460406	SOX3_SOX2	ENST00000433779.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000378325.3|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000354919.6|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000313519.5|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila) 	ENST00000420416.1|SUV39H2|ENSG00000152455.11|suppressor of variegation 3-9 homolog 2 (Drosophila)
hg19_v2_chr2_+_46926326_46926452	0.460187	SOX3_SOX2	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr6_+_41040678_41040722	0.459116	SOX3_SOX2	ENST00000341376.6|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha 	ENST00000353205.5|NFYA|ENSG00000001167.10|nuclear transcription factor Y, alpha
hg19_v2_chr19_-_37958318_37958365	0.458728	SOX3_SOX2	ENST00000316950.6|ZNF569|ENSG00000196437.6|zinc finger protein 569 	ENST00000591710.1|ZNF569|ENSG00000196437.6|zinc finger protein 569
hg19_v2_chr9_-_116061476_116061476	0.457628	SOX3_SOX2	ENST00000441031.3|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr19_+_50180507_50180551	0.45748	SOX3_SOX2	ENST00000454376.2|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1 	ENST00000524771.1|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr13_-_36920615_36920659	0.456306	SOX3_SOX2	ENST00000494062.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr4_-_7941596_7941653	0.455759	SOX3_SOX2	ENST00000420658.1|AFAP1|ENSG00000196526.6|actin filament associated protein 1 	ENST00000358461.2|AFAP1|ENSG00000196526.6|actin filament associated protein 1
hg19_v2_chr5_-_124084493_124084524	0.455614	SOX3_SOX2	ENST00000509799.1|ZNF608|ENSG00000168916.11|zinc finger protein 608
hg19_v2_chr6_+_83777374_83777456	0.454989	SOX3_SOX2	ENST00000349129.2|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000237163.5|DOPEY1|ENSG00000083097.10|dopey family member 1 	ENST00000536812.1|DOPEY1|ENSG00000083097.10|dopey family member 1
hg19_v2_chr14_+_102414651_102414721	0.454982	SOX3_SOX2	ENST00000607414.1|RP11-1017G21.5|ENSG00000271780.1|RP11-1017G21.5
hg19_v2_chr1_-_243417762_243417788	0.454446	SOX3_SOX2	ENST00000522191.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr4_-_164534657_164534701	0.45325	SOX3_SOX2	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr18_+_76740189_76740275	0.452129	SOX3_SOX2	ENST00000537592.2|SALL3|ENSG00000256463.4|spalt-like transcription factor 3 	ENST00000575389.2|SALL3|ENSG00000256463.4|spalt-like transcription factor 3
hg19_v2_chr3_+_177159695_177159709	0.450343	SOX3_SOX2	ENST00000442937.1|LINC00578|ENSG00000228221.1|long intergenic non-protein coding RNA 578
hg19_v2_chr2_-_197457335_197457421	0.450105	SOX3_SOX2	ENST00000260983.3|HECW2|ENSG00000138411.6|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr20_+_68306_68351	0.449197	SOX3_SOX2	ENST00000382410.2|DEFB125|ENSG00000178591.6|defensin, beta 125
hg19_v2_chr1_+_228870824_228870910	0.448812	SOX3_SOX2	ENST00000366691.3|RHOU|ENSG00000116574.4|ras homolog family member U
hg19_v2_chr13_+_111855399_111855413	0.44858	SOX3_SOX2	ENST00000426768.2|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr12_+_133614062_133614117	0.448503	SOX3_SOX2	ENST00000540031.1|ZNF84|ENSG00000198040.6|zinc finger protein 84 	ENST00000536123.1|ZNF84|ENSG00000198040.6|zinc finger protein 84
hg19_v2_chr3_+_94657086_94657107	0.448062	SOX3_SOX2	ENST00000463200.1|LINC00879|ENSG00000239589.1|long intergenic non-protein coding RNA 879
hg19_v2_chr14_-_21489271_21489284	0.446577	SOX3_SOX2	ENST00000553593.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr2_-_14541060_14541087	0.445867	SOX3_SOX2	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr17_+_30814707_30814814	0.445748	SOX3_SOX2	ENST00000584792.1|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr3_+_49977894_49977934	0.445729	SOX3_SOX2	ENST00000433811.1|RBM6|ENSG00000004534.10|RNA binding motif protein 6
hg19_v2_chr4_-_53522703_53522757	0.445462	SOX3_SOX2	ENST00000508499.1|USP46|ENSG00000109189.8|ubiquitin specific peptidase 46
hg19_v2_chr6_-_52668605_52668708	0.444475	SOX3_SOX2	ENST00000334575.5|GSTA1|ENSG00000243955.1|glutathione S-transferase alpha 1
hg19_v2_chr1_-_17307173_17307330	0.443991	SOX3_SOX2	ENST00000438542.1|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2 	ENST00000375535.3|MFAP2|ENSG00000117122.9|microfibrillar-associated protein 2
hg19_v2_chr20_+_60697480_60697583	0.443837	SOX3_SOX2	ENST00000370915.1|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000253001.4|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000400318.2|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279068.6|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae) 	ENST00000279069.7|LSM14B|ENSG00000149657.15|LSM14B, SCD6 homolog B (S. cerevisiae)
hg19_v2_chr2_+_239756671_239756732	0.443649	SOX3_SOX2	ENST00000448943.2|TWIST2|ENSG00000233608.2|twist family bHLH transcription factor 2
hg19_v2_chr12_-_104531785_104531812	0.443198	SOX3_SOX2	ENST00000551727.1|NFYB|ENSG00000120837.3|nuclear transcription factor Y, beta
hg19_v2_chr5_-_111092930_111092955	0.440137	SOX3_SOX2	ENST00000257435.7|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr2_-_166060571_166060582	0.439668	SOX3_SOX2	ENST00000360093.3|SCN3A|ENSG00000153253.11|sodium channel, voltage-gated, type III, alpha subunit
hg19_v2_chr8_-_7332604_7332604	0.439614	SOX3_SOX2	ENST00000316169.2|DEFB104B|ENSG00000177023.2|defensin, beta 104B
hg19_v2_chr2_+_27719697_27719723	0.438222	SOX3_SOX2	ENST00000264717.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator 	ENST00000424318.2|GCKR|ENSG00000084734.4|glucokinase (hexokinase 4) regulator
hg19_v2_chr16_-_31085033_31085078	0.438199	SOX3_SOX2	ENST00000414399.1|ZNF668|ENSG00000167394.8|zinc finger protein 668
hg19_v2_chr6_+_87865262_87865339	0.437709	SOX3_SOX2	ENST00000369577.3|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000518845.1|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000339907.4|ZNF292|ENSG00000188994.8|zinc finger protein 292 	ENST00000496806.2|ZNF292|ENSG00000188994.8|zinc finger protein 292
hg19_v2_chr1_+_223566715_223566791	0.436549	SOX3_SOX2	ENST00000366875.3|C1orf65|ENSG00000178395.5|chromosome 1 open reading frame 65
hg19_v2_chr8_-_38386175_38386180	0.435836	SOX3_SOX2	ENST00000437935.2|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86 	ENST00000358138.1|C8orf86|ENSG00000196166.3|chromosome 8 open reading frame 86
hg19_v2_chr5_+_102595119_102595142	0.435495	SOX3_SOX2	ENST00000510890.1|C5orf30|ENSG00000181751.5|chromosome 5 open reading frame 30
hg19_v2_chr2_+_11679963_11679986	0.435188	SOX3_SOX2	ENST00000263834.5|GREB1|ENSG00000196208.9|growth regulation by estrogen in breast cancer 1
hg19_v2_chr8_-_119964434_119964445	0.434085	SOX3_SOX2	ENST00000297350.4|TNFRSF11B|ENSG00000164761.4|tumor necrosis factor receptor superfamily, member 11b
hg19_v2_chr19_-_20844343_20844351	0.433739	SOX3_SOX2	ENST00000595405.1|ZNF626|ENSG00000188171.10|zinc finger protein 626
hg19_v2_chr7_-_75988321_75988348	0.433496	SOX3_SOX2	ENST00000307630.3|YWHAG|ENSG00000170027.5|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma
hg19_v2_chr5_-_65017921_65017968	0.43325	SOX3_SOX2	ENST00000381007.4|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr12_+_49297887_49297898	0.432972	SOX3_SOX2	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr22_+_27068766_27068819	0.432959	SOX3_SOX2	ENST00000435162.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000437071.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000440816.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5	ENST00000421253.1|CTA-211A9.5|ENSG00000244625.1|CTA-211A9.5
hg19_v2_chr22_-_48943199_48943199	0.430818	SOX3_SOX2	ENST00000407505.3|CTA-299D3.8|ENSG00000219016.3|Uncharacterized protein
hg19_v2_chr12_+_53491220_53491229	0.430377	SOX3_SOX2	ENST00000548547.1|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6 	ENST00000301464.3|IGFBP6|ENSG00000167779.3|insulin-like growth factor binding protein 6
hg19_v2_chr6_+_30848829_30848848	0.430189	SOX3_SOX2	ENST00000508317.1|DDR1|ENSG00000204580.7|discoidin domain receptor tyrosine kinase 1
hg19_v2_chr1_+_87794150_87794172	0.429732	SOX3_SOX2	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr19_-_58514129_58514205	0.429695	SOX3_SOX2	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr15_+_80987617_80987720	0.429618	SOX3_SOX2	ENST00000258884.4|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C 	ENST00000558464.1|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C
hg19_v2_chr11_+_46402744_46402777	0.427881	SOX3_SOX2	ENST00000533952.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr20_-_32274179_32274213	0.427302	SOX3_SOX2	ENST00000343380.5|E2F1|ENSG00000101412.9|E2F transcription factor 1
hg19_v2_chr17_+_63133587_63133627	0.426727	SOX3_SOX2	ENST00000449996.3|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9 	ENST00000262406.9|RGS9|ENSG00000108370.11|regulator of G-protein signaling 9
hg19_v2_chr2_-_73964447_73964527	0.426526	SOX3_SOX2	ENST00000272424.5|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000409716.2|TPRKB|ENSG00000144034.10|TP53RK binding protein 	ENST00000318190.7|TPRKB|ENSG00000144034.10|TP53RK binding protein
hg19_v2_chr19_+_13228917_13229048	0.426155	SOX3_SOX2	ENST00000586171.1|NACC1|ENSG00000160877.5|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
hg19_v2_chr17_+_77751931_77752014	0.425231	SOX3_SOX2	ENST00000310942.4|CBX2|ENSG00000173894.6|chromobox homolog 2 	ENST00000269399.5|CBX2|ENSG00000173894.6|chromobox homolog 2
hg19_v2_chr16_+_57653625_57653669	0.425135	SOX3_SOX2	ENST00000567553.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000565314.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr12_-_69080590_69080644	0.42499	SOX3_SOX2	ENST00000433116.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2	ENST00000500695.2|RP11-637A17.2|ENSG00000247363.2|RP11-637A17.2
hg19_v2_chr16_+_3162557_3162796	0.424645	SOX3_SOX2	ENST00000382192.3|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000219091.4|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000444510.2|ZNF205|ENSG00000122386.6|zinc finger protein 205 	ENST00000414351.1|ZNF205|ENSG00000122386.6|zinc finger protein 205
hg19_v2_chr3_-_167813132_167813183	0.423973	SOX3_SOX2	ENST00000309027.4|GOLIM4|ENSG00000173905.4|golgi integral membrane protein 4
hg19_v2_chr17_-_73775839_73775868	0.423248	SOX3_SOX2	ENST00000592643.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000591890.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000587171.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000254810.4|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B) 	ENST00000589599.1|H3F3B|ENSG00000132475.4|H3 histone, family 3B (H3.3B)
hg19_v2_chr11_+_66624527_66624592	0.422157	SOX3_SOX2	ENST00000393952.3|LRFN4|ENSG00000173621.8|leucine rich repeat and fibronectin type III domain containing 4
hg19_v2_chr1_-_243418344_243418356	0.41892	SOX3_SOX2	ENST00000366542.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr7_-_142724282_142724282	0.418475	SOX3_SOX2	ENST00000350513.2|OR9A2|ENSG00000179468.5|olfactory receptor, family 9, subfamily A, member 2
hg19_v2_chr9_-_43630730_43630730	0.418191	SOX3_SOX2	ENST00000332857.6|SPATA31A6|ENSG00000185775.9|SPATA31 subfamily A, member 6
hg19_v2_chr7_-_6388537_6388611	0.4177	SOX3_SOX2	ENST00000313324.4|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A 	ENST00000530143.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr7_-_8302207_8302242	0.41672	SOX3_SOX2	ENST00000407906.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr1_-_20755140_20755275	0.415806	SOX3_SOX2	ENST00000418743.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141 	ENST00000426428.1|RP4-749H3.1|ENSG00000236963.1|long intergenic non-protein coding RNA 1141
hg19_v2_chr3_+_49058444_49058618	0.415692	SOX3_SOX2	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr14_+_63671105_63671126	0.415183	SOX3_SOX2	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr3_-_87039662_87039852	0.41408	SOX3_SOX2	ENST00000494229.1|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr19_+_17326521_17326574	0.413626	SOX3_SOX2	ENST00000593597.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr4_+_81118647_81118666	0.413519	SOX3_SOX2	ENST00000415738.2|PRDM8|ENSG00000152784.11|PR domain containing 8
hg19_v2_chr12_+_133656995_133657060	0.413349	SOX3_SOX2	ENST00000356456.5|ZNF140|ENSG00000196387.5|zinc finger protein 140
hg19_v2_chr7_+_28725585_28725608	0.41322	SOX3_SOX2	ENST00000396298.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr7_-_107643674_107643700	0.413031	SOX3_SOX2	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr12_-_16761117_16761148	0.412933	SOX3_SOX2	ENST00000538051.1|LMO3|ENSG00000048540.10|LIM domain only 3 (rhombotin-like 2)
hg19_v2_chr3_-_197025447_197025533	0.412238	SOX3_SOX2	ENST00000346964.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000357674.4|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000314062.3|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000448528.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000419553.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr17_+_76037081_76037128	0.411371	SOX3_SOX2	ENST00000588549.1|TNRC6C|ENSG00000078687.12|trinucleotide repeat containing 6C
hg19_v2_chr11_+_46402297_46402306	0.411352	SOX3_SOX2	ENST00000405308.2|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr10_-_97200772_97200919	0.411008	SOX3_SOX2	ENST00000371241.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000354106.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371239.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000361941.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000277982.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371245.3|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr18_+_55888767_55888809	0.410447	SOX3_SOX2	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr14_-_21994525_21994634	0.410185	SOX3_SOX2	ENST00000538754.1|SALL2|ENSG00000165821.7|spalt-like transcription factor 2
hg19_v2_chr9_-_21385396_21385396	0.407899	SOX3_SOX2	ENST00000380206.2|IFNA2|ENSG00000188379.5|interferon, alpha 2
hg19_v2_chr11_+_34645791_34645836	0.407117	SOX3_SOX2	ENST00000529527.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000531728.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000525253.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr19_+_21264980_21265026	0.406759	SOX3_SOX2	ENST00000596053.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000597086.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596143.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000596367.1|ZNF714|ENSG00000160352.11|zinc finger protein 714 	ENST00000601416.1|ZNF714|ENSG00000160352.11|zinc finger protein 714
hg19_v2_chr2_+_105858200_105858200	0.406525	SOX3_SOX2	ENST00000258456.1|GPR45|ENSG00000135973.1|G protein-coupled receptor 45
hg19_v2_chr1_+_213123976_213124009	0.405846	SOX3_SOX2	ENST00000366965.2|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000366967.2|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr6_-_72130472_72130519	0.405424	SOX3_SOX2	ENST00000426635.2|LINC00472|ENSG00000233237.2|long intergenic non-protein coding RNA 472
hg19_v2_chr1_+_185126598_185126655	0.405382	SOX3_SOX2	ENST00000450350.1|SWT1|ENSG00000116668.8|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
hg19_v2_chr13_-_36920420_36920574	0.405139	SOX3_SOX2	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr22_+_38864041_38864150	0.405135	SOX3_SOX2	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr1_-_226926864_226927038	0.404927	SOX3_SOX2	ENST00000429204.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B 	ENST00000366784.1|ITPKB|ENSG00000143772.5|inositol-trisphosphate 3-kinase B
hg19_v2_chr10_+_19777984_19778028	0.404699	SOX3_SOX2	ENST00000377265.3|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1 	ENST00000455457.2|C10orf112|ENSG00000204740.5|MAM and LDL receptor class A domain containing 1
hg19_v2_chr1_-_247495045_247495177	0.404502	SOX3_SOX2	ENST00000294753.4|ZNF496|ENSG00000162714.8|zinc finger protein 496 	ENST00000366498.2|ZNF496|ENSG00000162714.8|zinc finger protein 496
hg19_v2_chr15_-_72521017_72521045	0.403792	SOX3_SOX2	ENST00000561609.1|PKM|ENSG00000067225.13|pyruvate kinase, muscle
hg19_v2_chr14_+_27342334_27342369	0.401817	SOX3_SOX2	ENST00000548170.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1	ENST00000552926.1|RP11-384J4.1|ENSG00000257612.1|RP11-384J4.1
hg19_v2_chr7_-_42951509_42951904	0.400577	SOX3_SOX2	ENST00000438029.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000432637.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000447342.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000431882.2|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000350427.4|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25 	ENST00000425683.1|C7orf25|ENSG00000136197.8|chromosome 7 open reading frame 25
hg19_v2_chr14_-_24020858_24020988	0.400405	SOX3_SOX2	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr7_-_105029812_105029860	0.400002	SOX3_SOX2	ENST00000482897.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr18_+_45778672_45778672	0.399432	SOX3_SOX2	ENST00000600091.1|AC091150.1|ENSG00000268960.1|HCG1818186; Uncharacterized protein
hg19_v2_chr5_-_137514288_137514331	0.399286	SOX3_SOX2	ENST00000454473.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000418329.1|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000455658.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000230901.5|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000402931.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr15_+_93447675_93447703	0.399238	SOX3_SOX2	ENST00000536619.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr3_-_65583561_65583610	0.398878	SOX3_SOX2	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr19_-_15442701_15442739	0.397776	SOX3_SOX2	ENST00000594841.1|BRD4|ENSG00000141867.13|bromodomain containing 4 	ENST00000601941.1|BRD4|ENSG00000141867.13|bromodomain containing 4
hg19_v2_chr3_+_177159744_177159791	0.397576	SOX3_SOX2	ENST00000439009.1|LINC00578|ENSG00000228221.1|long intergenic non-protein coding RNA 578
hg19_v2_chr12_-_13248732_13248744	0.396487	SOX3_SOX2	ENST00000396302.3|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chr1_-_45672221_45672260	0.39637	SOX3_SOX2	ENST00000359600.5|ZSWIM5|ENSG00000162415.6|zinc finger, SWIM-type containing 5
hg19_v2_chrX_-_132352373_132352384	0.396111	SOX3_SOX2	ENST00000310125.4|TFDP3|ENSG00000183434.9|transcription factor Dp family, member 3
hg19_v2_chr12_-_50643664_50643679	0.395777	SOX3_SOX2	ENST00000550592.1|LIMA1|ENSG00000050405.9|LIM domain and actin binding 1
hg19_v2_chr12_-_71551868_71551882	0.395292	SOX3_SOX2	ENST00000247829.3|TSPAN8|ENSG00000127324.4|tetraspanin 8
hg19_v2_chr15_+_32322709_32322759	0.394331	SOX3_SOX2	ENST00000455693.2|CHRNA7|ENSG00000175344.12|cholinergic receptor, nicotinic, alpha 7 (neuronal)
hg19_v2_chr1_+_35734616_35734642	0.393989	SOX3_SOX2	ENST00000441447.1|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr18_+_56532100_56532130	0.392695	SOX3_SOX2	ENST00000588456.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589481.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000591049.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr5_-_150284532_150284549	0.392253	SOX3_SOX2	ENST00000394226.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000446148.2|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000274599.5|ZNF300|ENSG00000145908.8|zinc finger protein 300 	ENST00000418587.2|ZNF300|ENSG00000145908.8|zinc finger protein 300
hg19_v2_chr10_+_115511434_115511454	0.392125	SOX3_SOX2	ENST00000369312.4|PLEKHS1|ENSG00000148735.10|pleckstrin homology domain containing, family S member 1
hg19_v2_chr15_-_34659349_34659479	0.391971	SOX3_SOX2	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr19_+_42254885_42254970	0.391699	SOX3_SOX2	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chr18_+_18943554_18943587	0.391438	SOX3_SOX2	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr11_+_48346472_48346472	0.391077	SOX3_SOX2	ENST00000319856.4|OR4C3|ENSG00000176547.7|olfactory receptor, family 4, subfamily C, member 3
hg19_v2_chr12_-_50305625_50305646	0.390299	SOX3_SOX2	ENST00000551922.1|RP11-70F11.11|ENSG00000258135.1|RP11-70F11.11	ENST00000550636.1|RP11-70F11.11|ENSG00000258135.1|RP11-70F11.11	ENST00000552628.1|RP11-70F11.11|ENSG00000258135.1|RP11-70F11.11	ENST00000552768.1|RP11-70F11.11|ENSG00000258135.1|RP11-70F11.11
hg19_v2_chr9_+_115249100_115249358	0.390272	SOX3_SOX2	ENST00000337530.6|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000374244.3|KIAA1958|ENSG00000165185.10|KIAA1958 	ENST00000536272.1|KIAA1958|ENSG00000165185.10|KIAA1958
hg19_v2_chr12_+_94071129_94071175	0.390261	SOX3_SOX2	ENST00000552983.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000332896.3|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000552033.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain 	ENST00000548483.1|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr2_+_66662249_66662267	0.39006	SOX3_SOX2	ENST00000560281.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr7_-_46521173_46521176	0.389502	SOX3_SOX2	ENST00000440935.1|AC004869.2|ENSG00000230680.2|AC004869.2
hg19_v2_chr17_-_26926005_26926070	0.389318	SOX3_SOX2	ENST00000536674.2|SPAG5|ENSG00000076382.12|sperm associated antigen 5
hg19_v2_chr17_-_74639730_74639811	0.38907	SOX3_SOX2	ENST00000589992.1|ST6GALNAC1|ENSG00000070526.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
hg19_v2_chr2_-_242556900_242556916	0.388311	SOX3_SOX2	ENST00000402545.1|THAP4|ENSG00000176946.7|THAP domain containing 4 	ENST00000402136.1|THAP4|ENSG00000176946.7|THAP domain containing 4
hg19_v2_chr16_-_20416053_20416064	0.387382	SOX3_SOX2	ENST00000302451.4|PDILT|ENSG00000169340.5|protein disulfide isomerase-like, testis expressed
hg19_v2_chr1_+_227751231_227751273	0.38695	SOX3_SOX2	ENST00000343776.5|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000608949.1|ZNF678|ENSG00000181450.13|zinc finger protein 678 	ENST00000397097.3|ZNF678|ENSG00000181450.13|zinc finger protein 678
hg19_v2_chr6_+_88054530_88054567	0.38603	SOX3_SOX2	ENST00000388923.4|C6orf163|ENSG00000203872.6|chromosome 6 open reading frame 163
hg19_v2_chr12_-_18243075_18243091	0.385662	SOX3_SOX2	ENST00000536890.1|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr18_+_56532053_56532095	0.385429	SOX3_SOX2	ENST00000592452.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr17_-_56406117_56406165	0.384707	SOX3_SOX2	ENST00000268893.6|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1 	ENST00000355701.3|BZRAP1|ENSG00000005379.11|benzodiazepine receptor (peripheral) associated protein 1
hg19_v2_chr12_-_52845910_52845938	0.384509	SOX3_SOX2	ENST00000252252.3|KRT6B|ENSG00000185479.5|keratin 6B
hg19_v2_chr20_-_22665932_22665982	0.383368	SOX3_SOX2	ENST00000437696.1|RP11-359G22.2|ENSG00000230400.1|RP11-359G22.2
hg19_v2_chr1_+_201708992_201709011	0.383206	SOX3_SOX2	ENST00000367295.1|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr12_-_54653313_54653416	0.382361	SOX3_SOX2	ENST00000550411.1|CBX5|ENSG00000094916.9|chromobox homolog 5 	ENST00000439541.2|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr2_-_86564696_86564728	0.382032	SOX3_SOX2	ENST00000437769.1|REEP1|ENSG00000068615.12|receptor accessory protein 1
hg19_v2_chr4_-_144940477_144940541	0.38111	SOX3_SOX2	ENST00000513128.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000429670.2|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group) 	ENST00000502664.1|GYPB|ENSG00000250361.2|glycophorin B (MNS blood group)
hg19_v2_chr7_-_128415844_128415849	0.381073	SOX3_SOX2	ENST00000249389.2|OPN1SW|ENSG00000128617.2|opsin 1 (cone pigments), short-wave-sensitive
hg19_v2_chr17_+_33914460_33914536	0.379958	SOX3_SOX2	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr6_+_32132360_32132437	0.379734	SOX3_SOX2	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr6_+_150070831_150070856	0.37834	SOX3_SOX2	ENST00000367380.5|PCMT1|ENSG00000120265.12|protein-L-isoaspartate (D-aspartate) O-methyltransferase
hg19_v2_chr10_+_102505468_102505546	0.378332	SOX3_SOX2	ENST00000361791.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000355243.3|PAX2|ENSG00000075891.17|paired box 2 	ENST00000428433.1|PAX2|ENSG00000075891.17|paired box 2 	ENST00000370296.2|PAX2|ENSG00000075891.17|paired box 2
hg19_v2_chr5_+_113769205_113769227	0.375634	SOX3_SOX2	ENST00000503706.1|KCNN2|ENSG00000080709.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
hg19_v2_chr7_-_30066233_30066332	0.373864	SOX3_SOX2	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr1_-_79472365_79472443	0.37377	SOX3_SOX2	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr6_-_111136299_111136352	0.373618	SOX3_SOX2	ENST00000457688.1|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr17_-_30668887_30668971	0.372874	SOX3_SOX2	ENST00000581747.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000583334.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75 	ENST00000580558.1|C17orf75|ENSG00000108666.5|chromosome 17 open reading frame 75
hg19_v2_chr9_+_39355699_39355699	0.372381	SOX3_SOX2	ENST00000377647.3|SPATA31A1|ENSG00000204849.5|SPATA31 subfamily A, member 1
hg19_v2_chr6_-_167040693_167040725	0.372133	SOX3_SOX2	ENST00000366863.2|RPS6KA2|ENSG00000071242.7|ribosomal protein S6 kinase, 90kDa, polypeptide 2
hg19_v2_chr4_+_24797085_24797180	0.37133	SOX3_SOX2	ENST00000382120.3|SOD3|ENSG00000109610.5|superoxide dismutase 3, extracellular
hg19_v2_chr6_-_75912508_75912580	0.3709	SOX3_SOX2	ENST00000416123.2|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr16_-_75299884_75299919	0.366706	SOX3_SOX2	ENST00000538440.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1 	ENST00000418647.3|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr16_-_279405_279462	0.365924	SOX3_SOX2	ENST00000430864.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000293872.8|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000337351.4|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae) 	ENST00000397783.1|LUC7L|ENSG00000007392.12|LUC7-like (S. cerevisiae)
hg19_v2_chr12_-_24715478_24715532	0.365465	SOX3_SOX2	ENST00000456299.2|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1	ENST00000540811.1|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1
hg19_v2_chr8_-_9762871_9762887	0.365077	SOX3_SOX2	ENST00000521242.1|LINC00599|ENSG00000253230.2|long intergenic non-protein coding RNA 599
hg19_v2_chr3_-_45267760_45267826	0.364839	SOX3_SOX2	ENST00000503771.1|TMEM158|ENSG00000249992.1|transmembrane protein 158 (gene/pseudogene)
hg19_v2_chr12_-_95009837_95009854	0.363955	SOX3_SOX2	ENST00000551457.1|TMCC3|ENSG00000057704.6|transmembrane and coiled-coil domain family 3
hg19_v2_chr10_-_13544945_13544976	0.363848	SOX3_SOX2	ENST00000378605.3|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000341083.3|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr12_-_18243119_18243133	0.363681	SOX3_SOX2	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr2_+_71205510_71205637	0.36354	SOX3_SOX2	ENST00000272421.6|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000441349.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53 	ENST00000457410.1|ANKRD53|ENSG00000144031.7|ankyrin repeat domain 53
hg19_v2_chr7_+_107301065_107301080	0.363505	SOX3_SOX2	ENST00000265715.3|SLC26A4|ENSG00000091137.7|solute carrier family 26 (anion exchanger), member 4
hg19_v2_chr12_-_49581152_49581241	0.363497	SOX3_SOX2	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr10_-_32217717_32217781	0.3633	SOX3_SOX2	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr16_+_57653596_57653610	0.362192	SOX3_SOX2	ENST00000568791.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000570044.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chr2_-_233352531_233352550	0.362105	SOX3_SOX2	ENST00000304546.1|ECEL1|ENSG00000171551.7|endothelin converting enzyme-like 1
hg19_v2_chr2_+_179059365_179059376	0.361374	SOX3_SOX2	ENST00000190611.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr4_-_9390709_9390709	0.360962	SOX3_SOX2	ENST00000508324.1|RP11-1396O13.13|ENSG00000219492.4|Uncharacterized protein
hg19_v2_chr17_+_33914276_33914386	0.360719	SOX3_SOX2	ENST00000592545.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000538556.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000312678.8|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit 	ENST00000589344.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr11_+_20044375_20044414	0.36056	SOX3_SOX2	ENST00000525322.1|NAV2|ENSG00000166833.15|neuron navigator 2 	ENST00000530408.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr17_+_4487294_4487307	0.359614	SOX3_SOX2	ENST00000338859.4|SMTNL2|ENSG00000188176.7|smoothelin-like 2
hg19_v2_chr5_+_6766004_6766038	0.359394	SOX3_SOX2	ENST00000506093.1|RP11-332J15.3|ENSG00000251365.1|RP11-332J15.3
hg19_v2_chr10_+_27793197_27793247	0.358613	SOX3_SOX2	ENST00000356940.6|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family 	ENST00000535776.1|RAB18|ENSG00000099246.12|RAB18, member RAS oncogene family
hg19_v2_chr5_+_138677515_138677581	0.358468	SOX3_SOX2	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr4_+_54243917_54244006	0.358006	SOX3_SOX2	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr12_-_11339543_11339543	0.357598	SOX3_SOX2	ENST00000334266.1|TAS2R42|ENSG00000186136.1|taste receptor, type 2, member 42
hg19_v2_chr9_-_130639997_130640022	0.357549	SOX3_SOX2	ENST00000373176.1|AK1|ENSG00000106992.13|adenylate kinase 1
hg19_v2_chr19_+_57791806_57791875	0.356746	SOX3_SOX2	ENST00000360338.3|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr10_+_123923205_123923359	0.355597	SOX3_SOX2	ENST00000369004.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2 	ENST00000260733.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr12_+_49761224_49761259	0.355132	SOX3_SOX2	ENST00000553127.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000321898.6|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr4_+_26165074_26165110	0.353571	SOX3_SOX2	ENST00000512351.1|RBPJ|ENSG00000168214.16|recombination signal binding protein for immunoglobulin kappa J region
hg19_v2_chr22_+_27053422_27053488	0.353529	SOX3_SOX2	ENST00000413665.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000421151.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000456129.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding) 	ENST00000430080.1|MIAT|ENSG00000225783.2|myocardial infarction associated transcript (non-protein coding)
hg19_v2_chr3_-_126373929_126373998	0.353399	SOX3_SOX2	ENST00000523403.1|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3 	ENST00000524230.2|TXNRD3|ENSG00000197763.8|thioredoxin reductase 3
hg19_v2_chr10_-_97321165_97321176	0.352149	SOX3_SOX2	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr17_+_77030267_77030391	0.350865	SOX3_SOX2	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr11_-_105948040_105948082	0.349981	SOX3_SOX2	ENST00000534815.1|KBTBD3|ENSG00000182359.10|kelch repeat and BTB (POZ) domain containing 3
hg19_v2_chr8_-_42623924_42623935	0.348125	SOX3_SOX2	ENST00000276410.2|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr11_-_2906979_2907111	0.347647	SOX3_SOX2	ENST00000380725.1|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000313407.6|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000430149.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000440480.2|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2) 	ENST00000414822.3|CDKN1C|ENSG00000129757.8|cyclin-dependent kinase inhibitor 1C (p57, Kip2)
hg19_v2_chr12_+_49761273_49761330	0.34753	SOX3_SOX2	ENST00000551540.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552918.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000548777.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000547865.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2 	ENST00000552171.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr13_+_98795434_98795480	0.345053	SOX3_SOX2	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr14_+_39644387_39644417	0.344602	SOX3_SOX2	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr9_+_112403059_112403079	0.344371	SOX3_SOX2	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chrX_-_73512358_73512402	0.34381	SOX3_SOX2	ENST00000602776.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr3_-_12200851_12200885	0.343743	SOX3_SOX2	ENST00000287814.4|TIMP4|ENSG00000157150.4|TIMP metallopeptidase inhibitor 4
hg19_v2_chr12_-_13248705_13248710	0.343384	SOX3_SOX2	ENST00000396310.2|GSG1|ENSG00000111305.14|germ cell associated 1
hg19_v2_chrX_-_117107542_117107677	0.342934	SOX3_SOX2	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
hg19_v2_chr1_-_235292250_235292261	0.342614	SOX3_SOX2	ENST00000366607.4|TOMM20|ENSG00000173726.6|translocase of outer mitochondrial membrane 20 homolog (yeast)
hg19_v2_chr12_-_10095997_10096094	0.341434	SOX3_SOX2	ENST00000412084.1|AC091814.2|ENSG00000225231.1|AC091814.2
hg19_v2_chr12_-_120907374_120907454	0.341407	SOX3_SOX2	ENST00000550458.1|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr7_+_138145076_138145116	0.341316	SOX3_SOX2	ENST00000343526.4|TRIM24|ENSG00000122779.12|tripartite motif containing 24
hg19_v2_chr14_+_77924373_77924451	0.340622	SOX3_SOX2	ENST00000216479.3|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000535854.2|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 	ENST00000555517.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr17_+_27717415_27717618	0.340222	SOX3_SOX2	ENST00000583121.1|TAOK1|ENSG00000160551.5|TAO kinase 1 	ENST00000261716.3|TAOK1|ENSG00000160551.5|TAO kinase 1
hg19_v2_chr20_-_50418947_50418964	0.339884	SOX3_SOX2	ENST00000371539.3|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr4_-_83483094_83483165	0.339109	SOX3_SOX2	ENST00000508701.1|TMEM150C|ENSG00000249242.3|transmembrane protein 150C 	ENST00000454948.3|TMEM150C|ENSG00000249242.3|transmembrane protein 150C
hg19_v2_chr7_+_106505696_106505798	0.338689	SOX3_SOX2	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr5_+_8839844_8839877	0.338248	SOX3_SOX2	ENST00000510229.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000506655.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3	ENST00000510067.1|RP11-143A12.3|ENSG00000250198.1|RP11-143A12.3
hg19_v2_chr6_-_30815936_30816035	0.336455	SOX3_SOX2	ENST00000442852.1|XXbac-BPG27H4.8|ENSG00000237923.1|XXbac-BPG27H4.8
hg19_v2_chr16_-_75299845_75299883	0.336301	SOX3_SOX2	ENST00000535626.2|BCAR1|ENSG00000050820.12|breast cancer anti-estrogen resistance 1
hg19_v2_chr14_+_105781102_105781230	0.33567	SOX3_SOX2	ENST00000547217.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr11_-_55371874_55371874	0.335367	SOX3_SOX2	ENST00000302231.4|OR4C11|ENSG00000172188.4|olfactory receptor, family 4, subfamily C, member 11
hg19_v2_chr19_+_11466062_11466159	0.334923	SOX3_SOX2	ENST00000251473.5|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000591329.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2  	ENST00000586380.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr7_+_134551583_134551599	0.334916	SOX3_SOX2	ENST00000435928.1|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr19_+_17420340_17420383	0.334212	SOX3_SOX2	ENST00000359866.4|DDA1|ENSG00000130311.6|DET1 and DDB1 associated 1
hg19_v2_chr1_-_161015663_161015694	0.334033	SOX3_SOX2	ENST00000534633.1|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr10_-_89577910_89578010	0.333191	SOX3_SOX2	ENST00000308448.7|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1 	ENST00000541004.1|ATAD1|ENSG00000138138.9|ATPase family, AAA domain containing 1
hg19_v2_chr1_-_108743471_108743499	0.333181	SOX3_SOX2	ENST00000569674.1|SLC25A24|ENSG00000085491.11|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
hg19_v2_chr17_-_16472483_16472533	0.332953	SOX3_SOX2	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr18_+_18822185_18822213	0.332792	SOX3_SOX2	ENST00000424526.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000400483.4|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like 	ENST00000431264.1|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr12_-_18890940_18890991	0.331994	SOX3_SOX2	ENST00000543242.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000539072.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000541966.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000266505.7|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000447925.2|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1 	ENST00000435379.1|PLCZ1|ENSG00000139151.10|phospholipase C, zeta 1
hg19_v2_chr1_+_165513231_165513248	0.330429	SOX3_SOX2	ENST00000294818.1|LRRC52|ENSG00000162763.3|leucine rich repeat containing 52
hg19_v2_chr6_-_132834184_132834337	0.329963	SOX3_SOX2	ENST00000367941.2|STX7|ENSG00000079950.9|syntaxin 7 	ENST00000367937.4|STX7|ENSG00000079950.9|syntaxin 7
hg19_v2_chr5_-_111092873_111092898	0.329076	SOX3_SOX2	ENST00000509025.1|NREP|ENSG00000134986.9|neuronal regeneration related protein 	ENST00000515855.1|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr19_+_50180409_50180501	0.328228	SOX3_SOX2	ENST00000391851.4|PRMT1|ENSG00000126457.16|protein arginine methyltransferase 1
hg19_v2_chr16_+_31085714_31085783	0.327845	SOX3_SOX2	ENST00000300850.5|ZNF646|ENSG00000167395.10|zinc finger protein 646 	ENST00000564189.1|ZNF646|ENSG00000167395.10|zinc finger protein 646 	ENST00000428260.1|ZNF646|ENSG00000167395.10|zinc finger protein 646
hg19_v2_chr3_+_149689066_149689066	0.3238	SOX3_SOX2	ENST00000593416.1|AC117395.1|ENSG00000268175.1|LOC646903 protein; Uncharacterized protein
hg19_v2_chr3_+_107241882_107241904	0.32105	SOX3_SOX2	ENST00000416476.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr7_+_116312411_116312502	0.32096	SOX3_SOX2	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr19_-_5292781_5292801	0.320074	SOX3_SOX2	ENST00000586065.1|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr5_+_65222438_65222471	0.319976	SOX3_SOX2	ENST00000380938.2|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr19_+_11708259_11708309	0.318855	SOX3_SOX2	ENST00000587939.1|ZNF627|ENSG00000198551.5|zinc finger protein 627 	ENST00000588174.1|ZNF627|ENSG00000198551.5|zinc finger protein 627
hg19_v2_chr2_+_66662690_66662711	0.317319	SOX3_SOX2	ENST00000488550.1|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr14_-_21852119_21852143	0.316881	SOX3_SOX2	ENST00000555943.1|SUPT16H|ENSG00000092201.5|suppressor of Ty 16 homolog (S. cerevisiae)
hg19_v2_chr18_+_43913973_43914005	0.316156	SOX3_SOX2	ENST00000590330.1|RNF165|ENSG00000141622.9|ring finger protein 165
hg19_v2_chr2_+_46926048_46926095	0.316128	SOX3_SOX2	ENST00000306503.5|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr10_+_123922941_123923023	0.315222	SOX3_SOX2	ENST00000360561.3|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr20_-_45530365_45530392	0.315177	SOX3_SOX2	ENST00000414085.1|RP11-323C15.2|ENSG00000236028.1|RP11-323C15.2
hg19_v2_chr10_-_97321112_97321163	0.315118	SOX3_SOX2	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr19_-_12833361_12833386	0.314871	SOX3_SOX2	ENST00000592287.1|TNPO2|ENSG00000105576.11|transportin 2
hg19_v2_chr13_+_111855414_111855417	0.314822	SOX3_SOX2	ENST00000375737.5|ARHGEF7|ENSG00000102606.13|Rho guanine nucleotide exchange factor (GEF) 7
hg19_v2_chr13_+_98795505_98795522	0.312613	SOX3_SOX2	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr14_+_77924204_77924229	0.312439	SOX3_SOX2	ENST00000555133.1|AHSA1|ENSG00000100591.3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)
hg19_v2_chr1_-_153538292_153538342	0.312224	SOX3_SOX2	ENST00000497140.1|S100A2|ENSG00000196754.6|S100 calcium binding protein A2 	ENST00000368708.3|S100A2|ENSG00000196754.6|S100 calcium binding protein A2
hg19_v2_chr5_-_159739532_159739607	0.311606	SOX3_SOX2	ENST00000520748.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000393977.3|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000257536.7|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr12_+_94071341_94071493	0.311318	SOX3_SOX2	ENST00000542893.2|CRADD|ENSG00000169372.8|CASP2 and RIPK1 domain containing adaptor with death domain
hg19_v2_chr12_+_133707161_133707202	0.311189	SOX3_SOX2	ENST00000538918.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000540609.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000248211.6|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000543271.1|ZNF10|ENSG00000256223.1|zinc finger protein 10 	ENST00000536877.1|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr3_+_112930387_112930431	0.310729	SOX3_SOX2	ENST00000485230.1|BOC|ENSG00000144857.10|BOC cell adhesion associated, oncogene regulated
hg19_v2_chr17_-_73505961_73505976	0.310148	SOX3_SOX2	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr20_+_34679725_34679774	0.309542	SOX3_SOX2	ENST00000432589.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr14_+_32546145_32546239	0.30854	SOX3_SOX2	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr4_+_159727222_159727266	0.308466	SOX3_SOX2	ENST00000512986.1|FNIP2|ENSG00000052795.8|folliculin interacting protein 2
hg19_v2_chr9_-_6645628_6645659	0.308434	SOX3_SOX2	ENST00000321612.6|GLDC|ENSG00000178445.8|glycine dehydrogenase (decarboxylating)
hg19_v2_chr6_-_47277634_47277651	0.308086	SOX3_SOX2	ENST00000296861.2|TNFRSF21|ENSG00000146072.6|tumor necrosis factor receptor superfamily, member 21
hg19_v2_chr1_-_167883327_167883352	0.307778	SOX3_SOX2	ENST00000476818.2|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367851.4|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble) 	ENST00000367848.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr19_-_55874611_55874633	0.307771	SOX3_SOX2	ENST00000424985.3|FAM71E2|ENSG00000180043.7|family with sequence similarity 71, member E2
hg19_v2_chr2_-_127977654_127977654	0.307579	SOX3_SOX2	ENST00000409327.1|CYP27C1|ENSG00000186684.8|cytochrome P450, family 27, subfamily C, polypeptide 1
hg19_v2_chr14_-_27291313_27291328	0.306273	SOX3_SOX2	ENST00000549330.1|RP11-626P14.1|ENSG00000257845.1|RP11-626P14.1
hg19_v2_chr12_+_58937907_58937907	0.306255	SOX3_SOX2	ENST00000546977.1|RP11-362K2.2|ENSG00000258231.1|Protein LOC100506869
hg19_v2_chr19_+_37960240_37960299	0.305674	SOX3_SOX2	ENST00000388801.3|ZNF570|ENSG00000171827.6|zinc finger protein 570
hg19_v2_chr4_+_42895284_42895284	0.305437	SOX3_SOX2	ENST00000399770.2|GRXCR1|ENSG00000215203.2|glutaredoxin, cysteine rich 1
hg19_v2_chr6_-_33385655_33385719	0.30525	SOX3_SOX2	ENST00000440279.3|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli) 	ENST00000607266.1|CUTA|ENSG00000112514.11|cutA divalent cation tolerance homolog (E. coli)
hg19_v2_chr13_-_28545276_28545276	0.304473	SOX3_SOX2	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr8_+_107460147_107460207	0.304393	SOX3_SOX2	ENST00000442977.2|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr2_-_200323414_200323468	0.304017	SOX3_SOX2	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr1_+_42928945_42929025	0.303691	SOX3_SOX2	ENST00000428554.2|CCDC30|ENSG00000186409.10|coiled-coil domain containing 30
hg19_v2_chr17_+_80416482_80416600	0.301392	SOX3_SOX2	ENST00000309794.11|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000345415.7|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000457415.3|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000584411.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000412079.2|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor 	ENST00000577432.1|NARF|ENSG00000141562.13|nuclear prelamin A recognition factor
hg19_v2_chr9_+_124088860_124088895	0.300266	SOX3_SOX2	ENST00000373806.1|GSN|ENSG00000148180.12|gelsolin
hg19_v2_chr5_-_131892501_131892530	0.299967	SOX3_SOX2	ENST00000450655.1|IL5|ENSG00000113525.5|interleukin 5 (colony-stimulating factor, eosinophil)
hg19_v2_chrX_+_82763265_82763283	0.299367	SOX3_SOX2	ENST00000373200.2|POU3F4|ENSG00000196767.4|POU class 3 homeobox 4
hg19_v2_chr5_+_140430979_140430979	0.299251	SOX3_SOX2	ENST00000306549.3|PCDHB1|ENSG00000171815.3|protocadherin beta 1
hg19_v2_chr9_-_139219640_139219640	0.299195	SOX3_SOX2	ENST00000601276.1|DKFZP434A062|ENSG00000267845.1|HCG2022364; Putative uncharacterized protein DKFZp434A062; Uncharacterized protein
hg19_v2_chr9_-_5830768_5830787	0.298512	SOX3_SOX2	ENST00000381506.3|ERMP1|ENSG00000099219.9|endoplasmic reticulum metallopeptidase 1
hg19_v2_chr1_+_174670143_174670160	0.298402	SOX3_SOX2	ENST00000367687.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like 	ENST00000347255.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr11_+_63580855_63580889	0.298223	SOX3_SOX2	ENST00000294244.4|C11orf84|ENSG00000168005.4|chromosome 11 open reading frame 84
hg19_v2_chr14_+_100259666_100259685	0.297551	SOX3_SOX2	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr3_+_46618727_46618745	0.296346	SOX3_SOX2	ENST00000296145.5|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr18_-_53089723_53089786	0.295525	SOX3_SOX2	ENST00000561992.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562512.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr7_+_26438187_26438351	0.29502	SOX3_SOX2	ENST00000439120.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000430548.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000421862.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000449537.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000420774.1|AC004540.5|ENSG00000214870.4|AC004540.5	ENST00000418758.2|AC004540.5|ENSG00000214870.4|AC004540.5
hg19_v2_chr4_+_113152978_113152989	0.294991	SOX3_SOX2	ENST00000309703.6|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr9_-_4299874_4299916	0.294813	SOX3_SOX2	ENST00000381971.3|GLIS3|ENSG00000107249.17|GLIS family zinc finger 3 	ENST00000477901.1|GLIS3|ENSG00000107249.17|GLIS family zinc finger 3
hg19_v2_chr4_+_83351715_83351786	0.29413	SOX3_SOX2	ENST00000273920.3|ENOPH1|ENSG00000145293.10|enolase-phosphatase 1
hg19_v2_chr9_-_116062045_116062045	0.29348	SOX3_SOX2	ENST00000478815.1|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr4_+_128554081_128554121	0.293184	SOX3_SOX2	ENST00000335251.6|INTU|ENSG00000164066.8|inturned planar cell polarity protein 	ENST00000296461.5|INTU|ENSG00000164066.8|inturned planar cell polarity protein
hg19_v2_chr21_-_32716556_32716609	0.291967	SOX3_SOX2	ENST00000455508.1|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr10_+_82298088_82298088	0.291361	SOX3_SOX2	ENST00000470604.2|SH2D4B|ENSG00000178217.9|SH2 domain containing 4B
hg19_v2_chr1_-_41487383_41487402	0.291181	SOX3_SOX2	ENST00000302946.8|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000372613.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000439569.2|SLFNL1|ENSG00000171790.11|schlafen-like 1 	ENST00000397197.2|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr1_+_174846570_174846584	0.290306	SOX3_SOX2	ENST00000392064.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr18_-_47013586_47013633	0.289808	SOX3_SOX2	ENST00000318240.3|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32 	ENST00000579820.1|C18orf32|ENSG00000177576.6|chromosome 18 open reading frame 32
hg19_v2_chr11_+_59224411_59224411	0.288719	SOX3_SOX2	ENST00000300127.2|OR4D6|ENSG00000166884.2|olfactory receptor, family 4, subfamily D, member 6
hg19_v2_chr1_-_17445930_17445954	0.288529	SOX3_SOX2	ENST00000375486.4|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000375481.1|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II 	ENST00000444885.2|PADI2|ENSG00000117115.8|peptidyl arginine deiminase, type II
hg19_v2_chr7_+_111846741_111846776	0.287941	SOX3_SOX2	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr2_+_177001685_177001685	0.287634	SOX3_SOX2	ENST00000432796.2|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr15_+_93426514_93426562	0.287632	SOX3_SOX2	ENST00000556722.1|CHD2|ENSG00000173575.14|chromodomain helicase DNA binding protein 2
hg19_v2_chr12_+_70219052_70219096	0.287561	SOX3_SOX2	ENST00000552032.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like 	ENST00000547771.2|MYRFL|ENSG00000166268.6|myelin regulatory factor-like
hg19_v2_chr8_-_95220775_95220820	0.287347	SOX3_SOX2	ENST00000441892.2|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000521491.1|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine) 	ENST00000027335.3|CDH17|ENSG00000079112.5|cadherin 17, LI cadherin (liver-intestine)
hg19_v2_chr16_-_67514982_67515140	0.28726	SOX3_SOX2	ENST00000565835.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000540149.1|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 	ENST00000290949.3|ATP6V0D1|ENSG00000159720.7|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
hg19_v2_chrX_+_147582402_147582529	0.284482	SOX3_SOX2	ENST00000370458.1|AFF2|ENSG00000155966.9|AF4/FMR2 family, member 2
hg19_v2_chr4_+_54243798_54243854	0.284469	SOX3_SOX2	ENST00000337488.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000358575.5|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1 	ENST00000507922.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr8_+_25543314_25543343	0.284231	SOX3_SOX2	ENST00000517964.1|RP11-219J21.1|ENSG00000253100.1|RP11-219J21.1
hg19_v2_chr17_-_39041479_39041501	0.283658	SOX3_SOX2	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chr3_-_47950745_47950757	0.282735	SOX3_SOX2	ENST00000429422.1|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr12_-_25055177_25055258	0.282383	SOX3_SOX2	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr2_-_157189180_157189290	0.282024	SOX3_SOX2	ENST00000539077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000424077.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000426264.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000339562.4|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2 	ENST00000421709.1|NR4A2|ENSG00000153234.9|nuclear receptor subfamily 4, group A, member 2
hg19_v2_chr9_+_107526443_107526477	0.281927	SOX3_SOX2	ENST00000374762.3|NIPSNAP3B|ENSG00000165028.7|nipsnap homolog 3B (C. elegans)
hg19_v2_chr8_-_42623747_42623755	0.281861	SOX3_SOX2	ENST00000534622.1|CHRNA6|ENSG00000147434.4|cholinergic receptor, nicotinic, alpha 6 (neuronal)
hg19_v2_chr3_-_197024394_197024740	0.281577	SOX3_SOX2	ENST00000434148.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000412364.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000436682.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000456699.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila) 	ENST00000392380.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr4_-_5990166_5990166	0.280961	SOX3_SOX2	ENST00000324058.5|C4orf50|ENSG00000181215.8|chromosome 4 open reading frame 50
hg19_v2_chr7_-_7575477_7575491	0.280938	SOX3_SOX2	ENST00000399429.3|COL28A1|ENSG00000215018.5|collagen, type XXVIII, alpha 1
hg19_v2_chrX_-_74145273_74145319	0.280822	SOX3_SOX2	ENST00000055682.6|KIAA2022|ENSG00000050030.9|KIAA2022
hg19_v2_chrX_+_2924654_2924654	0.280174	SOX3_SOX2	ENST00000381130.2|ARSH|ENSG00000205667.2|arylsulfatase family, member H
hg19_v2_chr15_-_42186248_42186275	0.279775	SOX3_SOX2	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chr22_-_20004330_20004364	0.279316	SOX3_SOX2	ENST00000263207.3|ARVCF|ENSG00000099889.9|armadillo repeat gene deleted in velocardiofacial syndrome
hg19_v2_chr11_-_33183048_33183077	0.278992	SOX3_SOX2	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr16_+_70207686_70208060	0.278009	SOX3_SOX2	ENST00000541793.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000314151.8|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000565806.1|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000569347.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C 	ENST00000536907.2|CLEC18C|ENSG00000157335.15|C-type lectin domain family 18, member C
hg19_v2_chr4_+_75023816_75023890	0.277874	SOX3_SOX2	ENST00000395759.2|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000331145.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000359107.5|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like 	ENST00000325278.6|MTHFD2L|ENSG00000163738.14|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
hg19_v2_chr21_-_37451680_37451687	0.277764	SOX3_SOX2	ENST00000399201.1|SETD4|ENSG00000185917.9|SET domain containing 4
hg19_v2_chr1_-_156051789_156051838	0.277628	SOX3_SOX2	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr16_-_28550348_28550495	0.277611	SOX3_SOX2	ENST00000324873.6|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr19_-_59030921_59030974	0.277473	SOX3_SOX2	ENST00000354590.3|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45 	ENST00000596739.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr1_+_93913713_93913839	0.27716	SOX3_SOX2	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr22_-_32555275_32555296	0.276039	SOX3_SOX2	ENST00000382097.3|C22orf42|ENSG00000205856.3|chromosome 22 open reading frame 42
hg19_v2_chr9_+_39884975_39884975	0.27507	SOX3_SOX2	ENST00000456183.2|SPATA31A2|ENSG00000204848.4|SPATA31 subfamily A, member 2
hg19_v2_chr3_-_93781750_93781831	0.273908	SOX3_SOX2	ENST00000314636.2|DHFRL1|ENSG00000178700.3|dihydrofolate reductase-like 1
hg19_v2_chr10_+_90672113_90672113	0.273093	SOX3_SOX2	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr19_+_10765003_10765058	0.272821	SOX3_SOX2	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr3_+_130613226_130613485	0.272818	SOX3_SOX2	ENST00000509662.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000328560.8|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000428331.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000359644.3|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000422190.2|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_+_16085263_16085314	0.272154	SOX3_SOX2	ENST00000483633.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000502739.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000431771.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr6_-_46889694_46889719	0.270845	SOX3_SOX2	ENST00000283296.7|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000362015.4|GPR116|ENSG00000069122.14|G protein-coupled receptor 116 	ENST00000456426.2|GPR116|ENSG00000069122.14|G protein-coupled receptor 116
hg19_v2_chr9_+_109625378_109625458	0.270323	SOX3_SOX2	ENST00000277225.5|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000457913.1|ZNF462|ENSG00000148143.8|zinc finger protein 462 	ENST00000472574.1|ZNF462|ENSG00000148143.8|zinc finger protein 462
hg19_v2_chr8_-_101962777_101962805	0.26933	SOX3_SOX2	ENST00000395951.3|YWHAZ|ENSG00000164924.13|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta
hg19_v2_chr19_-_55660561_55660722	0.268934	SOX3_SOX2	ENST00000587758.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000356783.5|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000291901.8|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588426.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588147.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000536926.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow) 	ENST00000588981.1|TNNT1|ENSG00000105048.12|troponin T type 1 (skeletal, slow)
hg19_v2_chr4_+_144257915_144258009	0.268255	SOX3_SOX2	ENST00000262995.4|GAB1|ENSG00000109458.4|GRB2-associated binding protein 1
hg19_v2_chr4_+_118955635_118955655	0.267179	SOX3_SOX2	ENST00000433996.2|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr1_-_53793725_53793789	0.266698	SOX3_SOX2	ENST00000371454.2|LRP8|ENSG00000157193.10|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
hg19_v2_chr9_+_27109440_27109456	0.266088	SOX3_SOX2	ENST00000519080.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr3_+_3841108_3841126	0.26545	SOX3_SOX2	ENST00000319331.3|LRRN1|ENSG00000175928.5|leucine rich repeat neuronal 1
hg19_v2_chr1_+_164529004_164529060	0.263605	SOX3_SOX2	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr2_+_113735575_113735606	0.263435	SOX3_SOX2	ENST00000376489.2|IL36G|ENSG00000136688.6|interleukin 36, gamma 	ENST00000259205.4|IL36G|ENSG00000136688.6|interleukin 36, gamma
hg19_v2_chr3_-_183735731_183735803	0.263277	SOX3_SOX2	ENST00000334444.6|ABCC5|ENSG00000114770.12|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
hg19_v2_chr3_-_123680047_123680112	0.263076	SOX3_SOX2	ENST00000409697.3|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr17_+_33914424_33914455	0.262827	SOX3_SOX2	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr20_-_14318248_14318264	0.262638	SOX3_SOX2	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr21_+_38445539_38445596	0.26055	SOX3_SOX2	ENST00000418766.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000450533.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000438055.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000355666.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000540756.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3 	ENST00000399010.1|TTC3|ENSG00000182670.9|tetratricopeptide repeat domain 3
hg19_v2_chr9_+_125486269_125486269	0.258314	SOX3_SOX2	ENST00000259466.1|OR1L4|ENSG00000136939.1|olfactory receptor, family 1, subfamily L, member 4
hg19_v2_chr1_+_54703710_54703710	0.257568	SOX3_SOX2	ENST00000361350.4|SSBP3-AS1|ENSG00000198711.4|SSBP3 antisense RNA 1
hg19_v2_chr4_-_75024085_75024085	0.25689	SOX3_SOX2	ENST00000600169.1|AC093677.1|ENSG00000269559.1|Uncharacterized protein
hg19_v2_chr1_+_100111479_100111499	0.256827	SOX3_SOX2	ENST00000263174.4|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr10_-_62332357_62332428	0.255856	SOX3_SOX2	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr9_-_103115185_103115235	0.255536	SOX3_SOX2	ENST00000374902.4|TEX10|ENSG00000136891.9|testis expressed 10
hg19_v2_chr3_-_134092561_134092639	0.255192	SOX3_SOX2	ENST00000510560.1|AMOTL2|ENSG00000114019.10|angiomotin like 2 	ENST00000504234.1|AMOTL2|ENSG00000114019.10|angiomotin like 2 	ENST00000515172.1|AMOTL2|ENSG00000114019.10|angiomotin like 2
hg19_v2_chr2_+_157330081_157330104	0.255051	SOX3_SOX2	ENST00000409674.1|GPD2|ENSG00000115159.11|glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
hg19_v2_chr2_-_201828356_201828412	0.254599	SOX3_SOX2	ENST00000234296.2|ORC2|ENSG00000115942.4|origin recognition complex, subunit 2
hg19_v2_chr12_-_89413456_89413484	0.2545	SOX3_SOX2	ENST00000500381.2|RP11-13A1.1|ENSG00000246363.2|RP11-13A1.1
hg19_v2_chr1_+_75594119_75594119	0.254433	SOX3_SOX2	ENST00000294638.5|LHX8|ENSG00000162624.10|LIM homeobox 8
hg19_v2_chr3_+_186915274_186915274	0.254251	SOX3_SOX2	ENST00000312295.4|RTP1|ENSG00000175077.5|receptor (chemosensory) transporter protein 1
hg19_v2_chr2_-_166702601_166702625	0.252533	SOX3_SOX2	ENST00000428888.1|AC009495.4|ENSG00000229195.1|AC009495.4
hg19_v2_chr4_-_52904425_52904471	0.252357	SOX3_SOX2	ENST00000535450.1|SGCB|ENSG00000163069.8|sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)
hg19_v2_chr9_+_124461603_124461649	0.251272	SOX3_SOX2	ENST00000373782.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr12_-_114211474_114211499	0.251006	SOX3_SOX2	ENST00000550905.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1	ENST00000547963.1|RP11-438N16.1|ENSG00000249550.2|RP11-438N16.1
hg19_v2_chr16_+_28874860_28874896	0.250809	SOX3_SOX2	ENST00000545570.1|SH2B1|ENSG00000178188.10|SH2B adaptor protein 1
hg19_v2_chr20_-_45985172_45985240	0.249962	SOX3_SOX2	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr16_-_28550320_28550345	0.249782	SOX3_SOX2	ENST00000395641.2|NUPR1|ENSG00000176046.7|nuclear protein, transcriptional regulator, 1
hg19_v2_chr2_-_232328867_232328921	0.249741	SOX3_SOX2	ENST00000453992.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000417652.1|NCL|ENSG00000115053.11|nucleolin 	ENST00000454824.1|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr19_+_11466167_11466180	0.249324	SOX3_SOX2	ENST00000591608.1|DKFZP761J1410|ENSG00000105520.6|Lipid phosphate phosphatase-related protein type 2
hg19_v2_chr8_-_139926236_139926269	0.249285	SOX3_SOX2	ENST00000303045.6|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1 	ENST00000435777.1|COL22A1|ENSG00000169436.12|collagen, type XXII, alpha 1
hg19_v2_chr16_+_8814563_8814603	0.247642	SOX3_SOX2	ENST00000425191.2|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase 	ENST00000569156.1|ABAT|ENSG00000183044.7|4-aminobutyrate aminotransferase
hg19_v2_chr18_-_24128496_24128554	0.246883	SOX3_SOX2	ENST00000417602.1|KCTD1|ENSG00000134504.8|potassium channel tetramerization domain containing 1
hg19_v2_chr8_+_62747349_62747515	0.246816	SOX3_SOX2	ENST00000517953.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000520097.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1	ENST00000519766.1|RP11-705O24.1|ENSG00000254119.1|RP11-705O24.1
hg19_v2_chr1_+_100111580_100111773	0.246724	SOX3_SOX2	ENST00000605497.1|PALMD|ENSG00000099260.6|palmdelphin
hg19_v2_chr8_+_134125727_134125747	0.246413	SOX3_SOX2	ENST00000521107.1|TG|ENSG00000042832.7|thyroglobulin
hg19_v2_chr16_+_53242350_53242398	0.246242	SOX3_SOX2	ENST00000565442.1|CHD9|ENSG00000177200.11|chromodomain helicase DNA binding protein 9
hg19_v2_chr10_-_735553_735683	0.24604	SOX3_SOX2	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr8_+_33613265_33613295	0.246001	SOX3_SOX2	ENST00000517292.1|RP11-317N12.1|ENSG00000253642.1|RP11-317N12.1
hg19_v2_chr18_+_18822216_18822319	0.245724	SOX3_SOX2	ENST00000269218.6|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr12_-_24103954_24103972	0.24522	SOX3_SOX2	ENST00000441133.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000545921.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr12_-_93835665_93835750	0.244647	SOX3_SOX2	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr3_-_120170052_120170100	0.244607	SOX3_SOX2	ENST00000295633.3|FSTL1|ENSG00000163430.5|follistatin-like 1
hg19_v2_chr11_-_47206965_47206974	0.244547	SOX3_SOX2	ENST00000525725.1|PACSIN3|ENSG00000165912.11|protein kinase C and casein kinase substrate in neurons 3
hg19_v2_chr14_-_21493123_21493448	0.244294	SOX3_SOX2	ENST00000556147.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554489.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555657.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557274.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555158.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554833.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555384.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556420.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554893.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553503.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555733.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000553867.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397856.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397855.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556008.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557182.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554483.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556688.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397853.3|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556329.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000554143.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000397851.2|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000555142.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000557676.1|NDRG2|ENSG00000165795.16|NDRG family member 2 	ENST00000556924.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chr15_-_45670924_45670991	0.243993	SOX3_SOX2	ENST00000396659.3|GATM|ENSG00000171766.11|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
hg19_v2_chr3_+_38307313_38307397	0.243962	SOX3_SOX2	ENST00000450935.2|SLC22A13|ENSG00000172940.7|solute carrier family 22 (organic anion/urate transporter), member 13
hg19_v2_chr3_-_121740969_121741106	0.243307	SOX3_SOX2	ENST00000393631.1|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000273691.3|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1 	ENST00000344209.5|ILDR1|ENSG00000145103.8|immunoglobulin-like domain containing receptor 1
hg19_v2_chr3_+_14860469_14860469	0.242287	SOX3_SOX2	ENST00000285046.5|FGD5|ENSG00000154783.6|FYVE, RhoGEF and PH domain containing 5
hg19_v2_chr4_-_182186182_182186217	0.241946	SOX3_SOX2	ENST00000512547.1|RP11-665C14.2|ENSG00000249460.1|RP11-665C14.2
hg19_v2_chr11_+_38668018_38668030	0.241665	SOX3_SOX2	ENST00000533575.1|RP11-64I17.1|ENSG00000254562.1|RP11-64I17.1
hg19_v2_chr19_+_50354393_50354422	0.241482	SOX3_SOX2	ENST00000391842.1|PTOV1|ENSG00000104960.11|prostate tumor overexpressed 1
hg19_v2_chr15_-_45493289_45493373	0.240273	SOX3_SOX2	ENST00000561278.1|SHF|ENSG00000138606.15|Src homology 2 domain containing F 	ENST00000290894.8|SHF|ENSG00000138606.15|Src homology 2 domain containing F
hg19_v2_chr9_+_41500679_41500679	0.239799	SOX3_SOX2	ENST00000377621.1|SPATA31A5|ENSG00000233788.4|SPATA31 subfamily A, member 5
hg19_v2_chr5_+_175792459_175792513	0.239293	SOX3_SOX2	ENST00000310389.5|ARL10|ENSG00000175414.6|ADP-ribosylation factor-like 10
hg19_v2_chr7_-_42276612_42276782	0.239031	SOX3_SOX2	ENST00000395925.3|GLI3|ENSG00000106571.8|GLI family zinc finger 3 	ENST00000437480.1|GLI3|ENSG00000106571.8|GLI family zinc finger 3
hg19_v2_chr15_+_69857515_69857531	0.237891	SOX3_SOX2	ENST00000559477.1|RP11-279F6.1|ENSG00000245750.3|RP11-279F6.1
hg19_v2_chr4_+_15683404_15683432	0.237665	SOX3_SOX2	ENST00000422728.2|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr3_-_48601206_48601222	0.236662	SOX3_SOX2	ENST00000273610.3|UCN2|ENSG00000145040.3|urocortin 2
hg19_v2_chr6_+_149068464_149068559	0.235741	SOX3_SOX2	ENST00000367463.4|UST|ENSG00000111962.7|uronyl-2-sulfotransferase
hg19_v2_chr15_-_79103757_79103815	0.235395	SOX3_SOX2	ENST00000388820.4|ADAMTS7|ENSG00000136378.10|ADAM metallopeptidase with thrombospondin type 1 motif, 7
hg19_v2_chr10_-_25012115_25012174	0.234926	SOX3_SOX2	ENST00000446003.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr8_-_144679602_144679617	0.234588	SOX3_SOX2	ENST00000526710.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr1_+_150039369_150039444	0.23417	SOX3_SOX2	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr4_+_83351791_83351802	0.234064	SOX3_SOX2	ENST00000509635.1|ENOPH1|ENSG00000145293.10|enolase-phosphatase 1
hg19_v2_chr16_+_88636789_88636827	0.233726	SOX3_SOX2	ENST00000301011.5|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18 	ENST00000452588.2|ZC3H18|ENSG00000158545.11|zinc finger CCCH-type containing 18
hg19_v2_chr18_+_56530692_56530723	0.233595	SOX3_SOX2	ENST00000588601.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr1_-_202897724_202897764	0.23349	SOX3_SOX2	ENST00000435533.3|KLHL12|ENSG00000117153.11|kelch-like family member 12 	ENST00000367258.1|KLHL12|ENSG00000117153.11|kelch-like family member 12
hg19_v2_chr7_+_73868439_73868450	0.233137	SOX3_SOX2	ENST00000424337.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr1_+_244998602_244998646	0.232925	SOX3_SOX2	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr22_+_20905269_20905278	0.232584	SOX3_SOX2	ENST00000457322.1|MED15|ENSG00000099917.13|mediator complex subunit 15
hg19_v2_chr16_+_290181_290221	0.231817	SOX3_SOX2	ENST00000417499.1|ITFG3|ENSG00000167930.11|integrin alpha FG-GAP repeat containing 3
hg19_v2_chrX_-_128977364_128977436	0.231704	SOX3_SOX2	ENST00000371064.3|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr18_+_7946941_7946952	0.230878	SOX3_SOX2	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr15_+_50474385_50474404	0.230375	SOX3_SOX2	ENST00000267842.5|SLC27A2|ENSG00000140284.6|solute carrier family 27 (fatty acid transporter), member 2
hg19_v2_chr12_-_95945246_95945270	0.229714	SOX3_SOX2	ENST00000258499.3|USP44|ENSG00000136014.7|ubiquitin specific peptidase 44
hg19_v2_chr19_+_56159362_56159405	0.228625	SOX3_SOX2	ENST00000593069.1|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106 	ENST00000308964.3|CCDC106|ENSG00000173581.3|coiled-coil domain containing 106
hg19_v2_chrX_-_73512411_73512444	0.22771	SOX3_SOX2	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr13_-_30881134_30881181	0.227295	SOX3_SOX2	ENST00000380617.3|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1 	ENST00000441394.1|KATNAL1|ENSG00000102781.9|katanin p60 subunit A-like 1
hg19_v2_chr13_-_36944307_36944322	0.227186	SOX3_SOX2	ENST00000355182.4|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr14_-_88459182_88459236	0.227053	SOX3_SOX2	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr16_+_812506_812524	0.226536	SOX3_SOX2	ENST00000569566.1|MSLN|ENSG00000102854.10|mesothelin
hg19_v2_chr17_-_49198216_49198236	0.226145	SOX3_SOX2	ENST00000262013.7|SPAG9|ENSG00000008294.16|sperm associated antigen 9 	ENST00000357122.4|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr13_+_76210448_76210494	0.226102	SOX3_SOX2	ENST00000377499.5|LMO7|ENSG00000136153.15|LIM domain 7
hg19_v2_chr11_-_10562710_10562782	0.221303	SOX3_SOX2	ENST00000528665.1|RNF141|ENSG00000110315.2|ring finger protein 141 	ENST00000265981.2|RNF141|ENSG00000110315.2|ring finger protein 141
hg19_v2_chr11_-_123625253_123625253	0.221193	SOX3_SOX2	ENST00000327930.2|OR6X1|ENSG00000221931.2|olfactory receptor, family 6, subfamily X, member 1
hg19_v2_chr11_-_2162468_2162497	0.220538	SOX3_SOX2	ENST00000434045.2|IGF2|ENSG00000167244.13|insulin-like growth factor 2 (somatomedin A)
hg19_v2_chrX_-_142722897_142723019	0.220268	SOX3_SOX2	ENST00000338017.4|SLITRK4|ENSG00000179542.11|SLIT and NTRK-like family, member 4
hg19_v2_chrX_+_17653413_17653413	0.219926	SOX3_SOX2	ENST00000398097.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr11_-_46141338_46141418	0.217907	SOX3_SOX2	ENST00000529782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000532010.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000525438.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000533757.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A 	ENST00000527782.1|PHF21A|ENSG00000135365.11|PHD finger protein 21A
hg19_v2_chr16_-_48281444_48281479	0.217773	SOX3_SOX2	ENST00000537808.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11 	ENST00000569991.1|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr10_-_18948208_18948219	0.217428	SOX3_SOX2	ENST00000607346.1|ARL5B-AS1|ENSG00000152487.6|ARL5B antisense RNA 1
hg19_v2_chr3_-_33700933_33701085	0.215343	SOX3_SOX2	ENST00000480013.1|CLASP2|ENSG00000163539.11|cytoplasmic linker associated protein 2
hg19_v2_chr1_+_172389836_172389874	0.214056	SOX3_SOX2	ENST00000460397.2|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr11_+_13690200_13690244	0.21329	SOX3_SOX2	ENST00000354817.3|FAR1|ENSG00000197601.8|fatty acyl CoA reductase 1
hg19_v2_chr19_+_8455200_8455301	0.212887	SOX3_SOX2	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr2_-_237172988_237173052	0.212737	SOX3_SOX2	ENST00000409749.3|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18 	ENST00000430053.1|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr1_-_6479963_6479986	0.212269	SOX3_SOX2	ENST00000377836.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000487437.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000489730.1|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2 	ENST00000377834.4|HES2|ENSG00000069812.7|hes family bHLH transcription factor 2
hg19_v2_chrX_-_17878827_17878846	0.212034	SOX3_SOX2	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr10_+_24497704_24497743	0.210955	SOX3_SOX2	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr19_+_35810164_35810291	0.209454	SOX3_SOX2	ENST00000598537.1|CD22|ENSG00000012124.10|CD22 molecule
hg19_v2_chr11_+_65122216_65122238	0.209411	SOX3_SOX2	ENST00000309880.5|TIGD3|ENSG00000173825.6|tigger transposable element derived 3
hg19_v2_chr2_-_228497888_228498036	0.209189	SOX3_SOX2	ENST00000264387.4|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83 	ENST00000409066.1|C2orf83|ENSG00000042304.6|chromosome 2 open reading frame 83
hg19_v2_chr4_+_189060573_189060573	0.209155	SOX3_SOX2	ENST00000332517.3|TRIML1|ENSG00000184108.3|tripartite motif family-like 1
hg19_v2_chr11_-_119991589_119991609	0.209079	SOX3_SOX2	ENST00000526881.1|TRIM29|ENSG00000137699.12|tripartite motif containing 29
hg19_v2_chr1_-_23670813_23670816	0.207859	SOX3_SOX2	ENST00000374612.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr5_+_147698550_147698550	0.207139	SOX3_SOX2	ENST00000597116.1|AC091948.1|ENSG00000268126.1|Uncharacterized protein
hg19_v2_chr3_+_141596371_141596516	0.206997	SOX3_SOX2	ENST00000495216.1|ATP1B3|ENSG00000069849.6|ATPase, Na+/K+ transporting, beta 3 polypeptide
hg19_v2_chr14_+_20611895_20611895	0.206802	SOX3_SOX2	ENST00000333629.1|OR4N5|ENSG00000184394.1|olfactory receptor, family 4, subfamily N, member 5
hg19_v2_chr9_-_39239171_39239171	0.205931	SOX3_SOX2	ENST00000358144.2|CNTNAP3|ENSG00000106714.13|contactin associated protein-like 3
hg19_v2_chr8_-_94752946_94753008	0.205387	SOX3_SOX2	ENST00000519109.1|RBM12B|ENSG00000183808.7|RNA binding motif protein 12B
hg19_v2_chr7_+_102036798_102036882	0.205231	SOX3_SOX2	ENST00000397912.3|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible) 	ENST00000354783.4|PRKRIP1|ENSG00000128563.9|PRKR interacting protein 1 (IL11 inducible)
hg19_v2_chr19_+_57791419_57791436	0.205215	SOX3_SOX2	ENST00000537645.1|ZNF460|ENSG00000197714.4|zinc finger protein 460
hg19_v2_chr19_-_56904799_56904919	0.204174	SOX3_SOX2	ENST00000589895.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000589143.1|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000301310.4|ZNF582|ENSG00000018869.12|zinc finger protein 582 	ENST00000586929.1|ZNF582|ENSG00000018869.12|zinc finger protein 582
hg19_v2_chr7_+_29186192_29186222	0.204001	SOX3_SOX2	ENST00000539406.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr19_+_15052301_15052301	0.203852	SOX3_SOX2	ENST00000248072.3|OR7C2|ENSG00000127529.7|olfactory receptor, family 7, subfamily C, member 2
hg19_v2_chr14_+_54976603_54976676	0.203086	SOX3_SOX2	ENST00000557317.1|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr4_+_15480828_15480868	0.202831	SOX3_SOX2	ENST00000389652.5|CC2D2A|ENSG00000048342.11|coiled-coil and C2 domain containing 2A
hg19_v2_chr5_+_102455968_102456013	0.202814	SOX3_SOX2	ENST00000358359.3|PPIP5K2|ENSG00000145725.15|diphosphoinositol pentakisphosphate kinase 2
hg19_v2_chr22_-_25342662_25342662	0.202784	SOX3_SOX2	ENST00000407886.1|TMEM211|ENSG00000206069.4|transmembrane protein 211
hg19_v2_chr16_-_52107814_52107814	0.202519	SOX3_SOX2	ENST00000562818.1|C16orf97|ENSG00000261190.1|chromosome 16 open reading frame 97
hg19_v2_chr20_+_55099542_55099542	0.202257	SOX3_SOX2	ENST00000371328.3|FAM209A|ENSG00000124103.8|family with sequence similarity 209, member A
hg19_v2_chr19_-_53770972_53770972	0.202205	SOX3_SOX2	ENST00000311170.4|VN1R4|ENSG00000228567.2|vomeronasal 1 receptor 4
hg19_v2_chr12_+_120907622_120907696	0.201554	SOX3_SOX2	ENST00000392509.2|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000549649.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1 	ENST00000548342.1|DYNLL1|ENSG00000088986.6|dynein, light chain, LC8-type 1
hg19_v2_chr6_-_160210604_160210641	0.200815	SOX3_SOX2	ENST00000420894.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000539756.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000544255.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr19_+_35596873_35596873	0.199911	SOX3_SOX2	ENST00000313865.6|AC020907.1|ENSG00000179066.6|Uncharacterized protein
hg19_v2_chr11_+_10772534_10772573	0.199504	SOX3_SOX2	ENST00000361367.2|CTR9|ENSG00000198730.3|CTR9, Paf1/RNA polymerase II complex component
hg19_v2_chr7_-_78400598_78400654	0.199331	SOX3_SOX2	ENST00000536571.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr2_+_179059188_179059250	0.198741	SOX3_SOX2	ENST00000392505.2|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000359685.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000357080.4|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6 	ENST00000409045.3|OSBPL6|ENSG00000079156.12|oxysterol binding protein-like 6
hg19_v2_chr19_+_9732156_9732223	0.198391	SOX3_SOX2	ENST00000586614.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000587536.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000591056.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82 	ENST00000592851.1|C19orf82|ENSG00000267106.1|chromosome 19 open reading frame 82
hg19_v2_chr12_-_24102576_24102637	0.197542	SOX3_SOX2	ENST00000537393.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000309359.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000381381.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5 	ENST00000451604.2|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr22_-_17602200_17602265	0.197404	SOX3_SOX2	ENST00000399875.1|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr15_+_38544476_38544574	0.196229	SOX3_SOX2	ENST00000299084.4|SPRED1|ENSG00000166068.8|sprouty-related, EVH1 domain containing 1
hg19_v2_chr14_+_105781048_105781101	0.195682	SOX3_SOX2	ENST00000458164.2|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2 	ENST00000447393.1|PACS2|ENSG00000179364.9|phosphofurin acidic cluster sorting protein 2
hg19_v2_chr16_+_57673430_57673438	0.195539	SOX3_SOX2	ENST00000540164.2|GPR56|ENSG00000205336.7|G protein-coupled receptor 56 	ENST00000568531.1|GPR56|ENSG00000205336.7|G protein-coupled receptor 56
hg19_v2_chrX_-_128977781_128977869	0.195287	SOX3_SOX2	ENST00000357166.6|ZDHHC9|ENSG00000188706.8|zinc finger, DHHC-type containing 9
hg19_v2_chr3_-_128294929_128294929	0.195191	SOX3_SOX2	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr14_+_35761580_35761679	0.195105	SOX3_SOX2	ENST00000553809.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000555764.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6 	ENST00000556506.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr12_-_5352315_5352324	0.194895	SOX3_SOX2	ENST00000536518.1|RP11-319E16.1|ENSG00000256115.1|RP11-319E16.1
hg19_v2_chr3_-_125820348_125820400	0.194204	SOX3_SOX2	ENST00000509064.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3 	ENST00000508835.1|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr6_+_56954919_56955005	0.193472	SOX3_SOX2	ENST00000508603.1|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000491832.2|ZNF451|ENSG00000112200.12|zinc finger protein 451 	ENST00000370710.6|ZNF451|ENSG00000112200.12|zinc finger protein 451
hg19_v2_chr1_+_104198640_104198640	0.19336	SOX3_SOX2	ENST00000422549.1|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr1_-_173174681_173174702	0.193346	SOX3_SOX2	ENST00000367718.1|TNFSF4|ENSG00000117586.6|tumor necrosis factor (ligand) superfamily, member 4
hg19_v2_chr22_-_26875631_26875647	0.193131	SOX3_SOX2	ENST00000402105.3|HPS4|ENSG00000100099.16|Hermansky-Pudlak syndrome 4
hg19_v2_chr6_-_4347271_4347373	0.191858	SOX3_SOX2	ENST00000437430.2|RP3-527G5.1|ENSG00000231811.2|RP3-527G5.1
hg19_v2_chr16_-_65268795_65268836	0.19163	SOX3_SOX2	ENST00000565901.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2	ENST00000567058.1|RP11-256I9.2|ENSG00000260834.1|RP11-256I9.2
hg19_v2_chr13_+_98795664_98795734	0.189755	SOX3_SOX2	ENST00000376581.5|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr6_+_126661253_126661356	0.188874	SOX3_SOX2	ENST00000368326.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368325.1|CENPW|ENSG00000203760.4|centromere protein W 	ENST00000368328.4|CENPW|ENSG00000203760.4|centromere protein W
hg19_v2_chr19_-_58400372_58400411	0.188557	SOX3_SOX2	ENST00000597832.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000435989.2|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr1_+_109256067_109256067	0.188311	SOX3_SOX2	ENST00000271311.2|FNDC7|ENSG00000143107.4|fibronectin type III domain containing 7
hg19_v2_chr16_+_69796209_69796275	0.188236	SOX3_SOX2	ENST00000359154.2|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000561780.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000563659.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2 	ENST00000448661.1|WWP2|ENSG00000198373.8|WW domain containing E3 ubiquitin protein ligase 2
hg19_v2_chr8_+_124864227_124864227	0.187381	SOX3_SOX2	ENST00000522917.1|FER1L6|ENSG00000214814.2|fer-1-like 6 (C. elegans)
hg19_v2_chr14_+_95078714_95078739	0.187325	SOX3_SOX2	ENST00000393078.3|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000393080.4|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 	ENST00000467132.1|SERPINA3|ENSG00000196136.12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
hg19_v2_chr14_+_54976546_54976602	0.186867	SOX3_SOX2	ENST00000216420.7|CGRRF1|ENSG00000100532.7|cell growth regulator with ring finger domain 1
hg19_v2_chr2_-_204399976_204400011	0.186055	SOX3_SOX2	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr20_-_4804244_4804293	0.18538	SOX3_SOX2	ENST00000379400.3|RASSF2|ENSG00000101265.11|Ras association (RalGDS/AF-6) domain family member 2
hg19_v2_chr1_-_91487013_91487070	0.184714	SOX3_SOX2	ENST00000347275.5|ZNF644|ENSG00000122482.16|zinc finger protein 644 	ENST00000370440.1|ZNF644|ENSG00000122482.16|zinc finger protein 644
hg19_v2_chr8_+_144718171_144718332	0.184483	SOX3_SOX2	ENST00000526926.1|ZNF623|ENSG00000183309.7|zinc finger protein 623 	ENST00000458270.2|ZNF623|ENSG00000183309.7|zinc finger protein 623
hg19_v2_chr1_+_248223984_248223984	0.184429	SOX3_SOX2	ENST00000359959.3|OR2L3|ENSG00000198128.3|olfactory receptor, family 2, subfamily L, member 3
hg19_v2_chr20_-_56285595_56285656	0.182614	SOX3_SOX2	ENST00000395816.3|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1 	ENST00000347215.4|PMEPA1|ENSG00000124225.11|prostate transmembrane protein, androgen induced 1
hg19_v2_chr16_+_15068916_15068944	0.182566	SOX3_SOX2	ENST00000455313.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr3_+_185304059_185304124	0.182487	SOX3_SOX2	ENST00000427465.2|SENP2|ENSG00000163904.8|SUMO1/sentrin/SMT3 specific peptidase 2
hg19_v2_chr9_+_71789133_71789220	0.182182	SOX3_SOX2	ENST00000348208.4|TJP2|ENSG00000119139.12|tight junction protein 2 	ENST00000265384.7|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr3_+_183415558_183415649	0.18179	SOX3_SOX2	ENST00000305135.5|YEATS2|ENSG00000163872.11|YEATS domain containing 2
hg19_v2_chr10_+_70320413_70320413	0.181599	SOX3_SOX2	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr12_+_56615761_56615815	0.181432	SOX3_SOX2	ENST00000447747.1|NABP2|ENSG00000139579.8|nucleic acid binding protein 2 	ENST00000399713.2|NABP2|ENSG00000139579.8|nucleic acid binding protein 2
hg19_v2_chr6_-_116447283_116447325	0.181208	SOX3_SOX2	ENST00000452729.1|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1 	ENST00000243222.4|COL10A1|ENSG00000123500.5|collagen, type X, alpha 1
hg19_v2_chr3_-_196987309_196987350	0.18049	SOX3_SOX2	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr13_-_24007815_24007872	0.179954	SOX3_SOX2	ENST00000382298.3|SACS|ENSG00000151835.9|spastic ataxia of Charlevoix-Saguenay (sacsin)
hg19_v2_chr11_+_69240431_69240463	0.179636	SOX3_SOX2	ENST00000545202.1|AP000439.1|ENSG00000255980.1|AP000439.1
hg19_v2_chr8_+_79428539_79428606	0.179464	SOX3_SOX2	ENST00000352966.5|PKIA|ENSG00000171033.8|protein kinase (cAMP-dependent, catalytic) inhibitor alpha
hg19_v2_chr4_-_113558079_113558145	0.179208	SOX3_SOX2	ENST00000445203.2|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr14_-_104029013_104029168	0.178911	SOX3_SOX2	ENST00000299204.4|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5 	ENST00000557666.1|BAG5|ENSG00000166170.9|BCL2-associated athanogene 5
hg19_v2_chr4_+_57276661_57276682	0.17851	SOX3_SOX2	ENST00000598320.1|AC068620.1|ENSG00000268171.1|Uncharacterized protein
hg19_v2_chr7_-_130353553_130353598	0.178267	SOX3_SOX2	ENST00000330992.7|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2 	ENST00000445977.2|COPG2|ENSG00000158623.10|coatomer protein complex, subunit gamma 2
hg19_v2_chr12_-_109915098_109915138	0.177643	SOX3_SOX2	ENST00000542858.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000542262.1|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10 	ENST00000424763.2|KCTD10|ENSG00000110906.8|potassium channel tetramerization domain containing 10
hg19_v2_chr7_-_99679324_99679371	0.176817	SOX3_SOX2	ENST00000292393.5|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000413658.2|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000412947.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000441298.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000449785.1|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000299667.4|ZNF3|ENSG00000166526.12|zinc finger protein 3 	ENST00000424697.1|ZNF3|ENSG00000166526.12|zinc finger protein 3
hg19_v2_chr1_+_152178320_152178334	0.176517	SOX3_SOX2	ENST00000429352.1|RP11-107M16.2|ENSG00000236427.1|RP11-107M16.2
hg19_v2_chr1_-_9970383_9970421	0.175773	SOX3_SOX2	ENST00000400904.3|CTNNBIP1|ENSG00000178585.10|catenin, beta interacting protein 1
hg19_v2_chr2_-_204400013_204400058	0.175533	SOX3_SOX2	ENST00000374489.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000374488.2|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000308091.4|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000453034.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENST00000420371.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr14_+_65182395_65182438	0.174085	SOX3_SOX2	ENST00000554088.1|PLEKHG3|ENSG00000126822.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
hg19_v2_chr3_+_50192457_50192498	0.173682	SOX3_SOX2	ENST00000414301.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 	ENST00000450338.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr8_+_132320792_132320868	0.173552	SOX3_SOX2	ENST00000519695.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1	ENST00000524275.1|CTD-2501M5.1|ENSG00000253507.1|CTD-2501M5.1
hg19_v2_chr19_+_17326191_17326215	0.173243	SOX3_SOX2	ENST00000595101.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000596136.1|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000379776.4|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr19_+_21106081_21106207	0.17245	SOX3_SOX2	ENST00000300540.3|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000595854.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000601284.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000328178.8|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000599885.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000596476.1|ZNF85|ENSG00000105750.10|zinc finger protein 85 	ENST00000345030.6|ZNF85|ENSG00000105750.10|zinc finger protein 85
hg19_v2_chr17_-_62308087_62308116	0.172201	SOX3_SOX2	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr1_-_63782888_63782904	0.171488	SOX3_SOX2	ENST00000436475.2|LINC00466|ENSG00000224209.2|long intergenic non-protein coding RNA 466
hg19_v2_chr4_+_106629929_106629982	0.171403	SOX3_SOX2	ENST00000512828.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000394730.3|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000507281.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing 	ENST00000515279.1|GSTCD|ENSG00000138780.10|glutathione S-transferase, C-terminal domain containing
hg19_v2_chr7_+_44788146_44788181	0.171348	SOX3_SOX2	ENST00000413916.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr12_+_93772402_93772430	0.171118	SOX3_SOX2	ENST00000546925.1|NUDT4|ENSG00000173598.9|nudix (nucleoside diphosphate linked moiety X)-type motif 4
hg19_v2_chr3_-_197024965_197025038	0.170952	SOX3_SOX2	ENST00000392382.2|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr4_-_100484825_100484901	0.17079	SOX3_SOX2	ENST00000273962.3|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000514547.1|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae) 	ENST00000455368.2|TRMT10A|ENSG00000145331.9|tRNA methyltransferase 10 homolog A (S. cerevisiae)
hg19_v2_chr22_+_21128167_21128167	0.170459	SOX3_SOX2	ENST00000215727.5|SERPIND1|ENSG00000099937.6|serpin peptidase inhibitor, clade D (heparin cofactor), member 1
hg19_v2_chrX_+_105937068_105937091	0.169504	SOX3_SOX2	ENST00000324342.3|RNF128|ENSG00000133135.9|ring finger protein 128, E3 ubiquitin protein ligase
hg19_v2_chr1_-_23670817_23670829	0.168976	SOX3_SOX2	ENST00000478691.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr21_+_30672433_30672464	0.167871	SOX3_SOX2	ENST00000451655.1|BACH1|ENSG00000156273.11|BTB and CNC homology 1, basic leucine zipper transcription factor 1
hg19_v2_chr11_-_95522907_95522989	0.167491	SOX3_SOX2	ENST00000358780.5|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B 	ENST00000542135.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr19_+_17326141_17326178	0.167302	SOX3_SOX2	ENST00000445667.2|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae) 	ENST00000263897.5|USE1|ENSG00000053501.8|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
hg19_v2_chr3_-_148939835_148939842	0.167183	SOX3_SOX2	ENST00000264613.6|CP|ENSG00000047457.9|ceruloplasmin (ferroxidase)
hg19_v2_chr6_+_167704838_167704952	0.166542	SOX3_SOX2	ENST00000366829.2|UNC93A|ENSG00000112494.5|unc-93 homolog A (C. elegans)
hg19_v2_chr16_-_48281305_48281419	0.16635	SOX3_SOX2	ENST00000356608.2|ABCC11|ENSG00000121270.11|ATP-binding cassette, sub-family C (CFTR/MRP), member 11
hg19_v2_chr16_+_16434185_16434185	0.166199	SOX3_SOX2	ENST00000524823.2|AC138969.4|ENSG00000183889.8|Protein PKD1P1
hg19_v2_chr18_+_32558208_32558340	0.166036	SOX3_SOX2	ENST00000436190.2|MAPRE2|ENSG00000166974.8|microtubule-associated protein, RP/EB family, member 2
hg19_v2_chr4_+_144434584_144434709	0.16448	SOX3_SOX2	ENST00000283131.3|SMARCA5|ENSG00000153147.5|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
hg19_v2_chr5_-_159739483_159739515	0.164398	SOX3_SOX2	ENST00000519673.1|CCNJL|ENSG00000135083.10|cyclin J-like 	ENST00000541762.1|CCNJL|ENSG00000135083.10|cyclin J-like
hg19_v2_chr19_+_10764937_10764998	0.16415	SOX3_SOX2	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr19_+_55043977_55044008	0.163325	SOX3_SOX2	ENST00000335056.3|KIR3DX1|ENSG00000104970.6|killer cell immunoglobulin-like receptor, three domains, X1
hg19_v2_chr8_+_82066514_82066565	0.162762	SOX3_SOX2	ENST00000519412.1|RP11-1149M10.2|ENSG00000253214.1|RP11-1149M10.2	ENST00000521953.1|RP11-1149M10.2|ENSG00000253214.1|RP11-1149M10.2
hg19_v2_chrX_-_15872914_15873054	0.162254	SOX3_SOX2	ENST00000380291.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000545766.1|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000421527.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit 	ENST00000329235.2|AP1S2|ENSG00000182287.9|adaptor-related protein complex 1, sigma 2 subunit
hg19_v2_chr2_+_102314161_102314206	0.161779	SOX3_SOX2	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr9_-_14313641_14313666	0.161193	SOX3_SOX2	ENST00000380953.1|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr5_-_67730240_67730308	0.161184	SOX3_SOX2	ENST00000507733.1|CTC-537E7.3|ENSG00000248884.1|CTC-537E7.3
hg19_v2_chr16_+_15068831_15068900	0.160977	SOX3_SOX2	ENST00000535621.2|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1 	ENST00000566426.1|PDXDC1|ENSG00000179889.14|pyridoxal-dependent decarboxylase domain containing 1
hg19_v2_chr11_-_114271139_114271247	0.160293	SOX3_SOX2	ENST00000325636.4|C11orf71|ENSG00000180425.7|chromosome 11 open reading frame 71
hg19_v2_chr6_-_31620095_31620135	0.160114	SOX3_SOX2	ENST00000424176.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456622.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr5_+_172068232_172068320	0.159865	SOX3_SOX2	ENST00000520919.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000522853.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000369800.5|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B
hg19_v2_chr21_-_32931290_32931341	0.159294	SOX3_SOX2	ENST00000286827.3|TIAM1|ENSG00000156299.8|T-cell lymphoma invasion and metastasis 1
hg19_v2_chr7_-_8302298_8302323	0.159163	SOX3_SOX2	ENST00000446305.1|ICA1|ENSG00000003147.13|islet cell autoantigen 1, 69kDa
hg19_v2_chr9_-_36401155_36401219	0.159095	SOX3_SOX2	ENST00000377885.2|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr3_+_193310969_193311053	0.159052	SOX3_SOX2	ENST00000392437.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr8_-_42396185_42396197	0.158779	SOX3_SOX2	ENST00000518717.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr1_-_193075180_193075244	0.158478	SOX3_SOX2	ENST00000367440.3|GLRX2|ENSG00000023572.4|glutaredoxin 2
hg19_v2_chr19_+_13229126_13229151	0.158103	SOX3_SOX2	ENST00000292431.4|NACC1|ENSG00000160877.5|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
hg19_v2_chr12_+_28605426_28605475	0.157159	SOX3_SOX2	ENST00000542801.1|CCDC91|ENSG00000123106.6|coiled-coil domain containing 91
hg19_v2_chr22_+_25595817_25595840	0.157001	SOX3_SOX2	ENST00000215855.2|CRYBB3|ENSG00000100053.5|crystallin, beta B3 	ENST00000404334.1|CRYBB3|ENSG00000100053.5|crystallin, beta B3
hg19_v2_chr19_+_42806250_42806298	0.15686	SOX3_SOX2	ENST00000598490.1|PRR19|ENSG00000188368.5|proline rich 19 	ENST00000341747.3|PRR19|ENSG00000188368.5|proline rich 19
hg19_v2_chr19_-_7553852_7553874	0.156274	SOX3_SOX2	ENST00000593547.1|PEX11G|ENSG00000104883.3|peroxisomal biogenesis factor 11 gamma
hg19_v2_chr8_+_107738343_107738413	0.154415	SOX3_SOX2	ENST00000521592.1|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr13_-_107220455_107220517	0.153765	SOX3_SOX2	ENST00000400198.3|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr1_-_23670752_23670803	0.153325	SOX3_SOX2	ENST00000302271.6|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000426846.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000427764.2|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000606561.1|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R 	ENST00000374616.3|HNRNPR|ENSG00000125944.14|heterogeneous nuclear ribonucleoprotein R
hg19_v2_chr17_+_27573875_27573881	0.153264	SOX3_SOX2	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chr17_+_35851570_35851667	0.152355	SOX3_SOX2	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr14_-_77923897_77923983	0.152338	SOX3_SOX2	ENST00000343765.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000327028.4|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000556412.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557466.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000448935.2|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000553888.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog 	ENST00000557658.1|VIPAS39|ENSG00000151445.11|VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
hg19_v2_chr3_-_52001448_52001478	0.151939	SOX3_SOX2	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chr7_+_99613212_99613236	0.151465	SOX3_SOX2	ENST00000426572.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1 	ENST00000535170.1|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr11_+_57531292_57531325	0.15081	SOX3_SOX2	ENST00000524579.1|CTNND1|ENSG00000198561.8|catenin (cadherin-associated protein), delta 1
hg19_v2_chr9_+_44868935_44868935	0.150704	SOX3_SOX2	ENST00000448436.2|RP11-160N1.10|ENSG00000204814.5|RP11-160N1.10
hg19_v2_chr3_-_8686479_8686486	0.150143	SOX3_SOX2	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr14_-_23103716_23103716	0.149961	SOX3_SOX2	ENST00000540461.1|OR6J1|ENSG00000255804.1|olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene)
hg19_v2_chr7_+_29234375_29234558	0.149418	SOX3_SOX2	ENST00000409350.1|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000495789.2|CHN2|ENSG00000106069.16|chimerin 2 	ENST00000539389.1|CHN2|ENSG00000106069.16|chimerin 2
hg19_v2_chr17_-_49198095_49198119	0.149208	SOX3_SOX2	ENST00000505279.1|SPAG9|ENSG00000008294.16|sperm associated antigen 9
hg19_v2_chr9_-_14313893_14313984	0.148559	SOX3_SOX2	ENST00000380921.3|NFIB|ENSG00000147862.10|nuclear factor I/B 	ENST00000380959.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr1_-_51796987_51797018	0.14809	SOX3_SOX2	ENST00000262676.5|TTC39A|ENSG00000085831.11|tetratricopeptide repeat domain 39A
hg19_v2_chr3_-_64009102_64009236	0.147616	SOX3_SOX2	ENST00000478185.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000482510.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000497323.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000492933.1|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 	ENST00000295901.4|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr2_+_65283506_65283527	0.147397	SOX3_SOX2	ENST00000377990.2|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr9_+_103189536_103189601	0.147231	SOX3_SOX2	ENST00000374885.1|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr2_+_74685413_74685456	0.146835	SOX3_SOX2	ENST00000233615.2|WBP1|ENSG00000239779.2|WW domain binding protein 1
hg19_v2_chr17_+_57233087_57233146	0.146448	SOX3_SOX2	ENST00000578777.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000577457.1|PRR11|ENSG00000068489.8|proline rich 11 	ENST00000582995.1|PRR11|ENSG00000068489.8|proline rich 11
hg19_v2_chr5_-_179072047_179072047	0.146195	SOX3_SOX2	ENST00000448248.2|C5orf60|ENSG00000204661.5|chromosome 5 open reading frame 60
hg19_v2_chr20_-_49547910_49547988	0.145347	SOX3_SOX2	ENST00000396032.3|ADNP|ENSG00000101126.11|activity-dependent neuroprotector homeobox
hg19_v2_chr3_-_57583130_57583152	0.145279	SOX3_SOX2	ENST00000303436.6|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr3_+_141043050_141043063	0.143891	SOX3_SOX2	ENST00000509842.1|ZBTB38|ENSG00000177311.6|zinc finger and BTB domain containing 38
hg19_v2_chr14_-_68000442_68000456	0.143156	SOX3_SOX2	ENST00000554278.1|TMEM229B|ENSG00000198133.4|transmembrane protein 229B
hg19_v2_chr17_-_39681578_39681697	0.142749	SOX3_SOX2	ENST00000593096.1|KRT19|ENSG00000171345.9|keratin 19
hg19_v2_chr12_-_58287735_58287752	0.14267	SOX3_SOX2	ENST00000548955.1|RP11-620J15.2|ENSG00000245651.2|RP11-620J15.2
hg19_v2_chr2_+_191273052_191273121	0.142125	SOX3_SOX2	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr13_-_107187462_107187462	0.141879	SOX3_SOX2	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr8_-_41754231_41754281	0.141812	SOX3_SOX2	ENST00000265709.8|ANK1|ENSG00000029534.15|ankyrin 1, erythrocytic
hg19_v2_chr3_-_105588231_105588396	0.141753	SOX3_SOX2	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr2_+_169757750_169757835	0.140405	SOX3_SOX2	ENST00000375363.3|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000429379.2|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000421979.1|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2
hg19_v2_chr4_-_113558014_113558073	0.14033	SOX3_SOX2	ENST00000503172.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000505019.1|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21 	ENST00000309071.5|C4orf21|ENSG00000138658.11|chromosome 4 open reading frame 21
hg19_v2_chr5_+_102201430_102201478	0.1399	SOX3_SOX2	ENST00000438793.3|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase 	ENST00000346918.2|PAM|ENSG00000145730.16|peptidylglycine alpha-amidating monooxygenase
hg19_v2_chr1_-_224033596_224033697	0.139856	SOX3_SOX2	ENST00000391878.2|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2 	ENST00000343537.7|TP53BP2|ENSG00000143514.12|tumor protein p53 binding protein, 2
hg19_v2_chr9_+_125562370_125562370	0.139466	SOX3_SOX2	ENST00000277309.2|OR1K1|ENSG00000165204.2|olfactory receptor, family 1, subfamily K, member 1
hg19_v2_chr20_+_55108302_55108302	0.138967	SOX3_SOX2	ENST00000371325.1|FAM209B|ENSG00000213714.1|family with sequence similarity 209, member B
hg19_v2_chr14_-_103589246_103589397	0.137694	SOX3_SOX2	ENST00000558224.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677 	ENST00000560742.1|LINC00677|ENSG00000259717.1|long intergenic non-protein coding RNA 677
hg19_v2_chr3_+_50192499_50192534	0.137663	SOX3_SOX2	ENST00000413852.1|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chrX_+_26234286_26234286	0.137424	SOX3_SOX2	ENST00000602297.1|MAGEB5|ENSG00000188408.4|melanoma antigen family B, 5
hg19_v2_chr9_-_119162885_119162885	0.136998	SOX3_SOX2	ENST00000445861.2|PAPPA-AS1|ENSG00000256040.1|PAPPA antisense RNA 1
hg19_v2_chr7_-_151330218_151330259	0.136993	SOX3_SOX2	ENST00000476632.1|PRKAG2|ENSG00000106617.9|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
hg19_v2_chr11_-_65640071_65640125	0.136734	SOX3_SOX2	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr16_-_3068171_3068191	0.136713	SOX3_SOX2	ENST00000572154.1|CLDN6|ENSG00000184697.6|claudin 6 	ENST00000328796.4|CLDN6|ENSG00000184697.6|claudin 6
hg19_v2_chr2_-_163695238_163695258	0.136583	SOX3_SOX2	ENST00000328032.4|KCNH7|ENSG00000184611.7|potassium voltage-gated channel, subfamily H (eag-related), member 7
hg19_v2_chr12_+_22778116_22778139	0.136115	SOX3_SOX2	ENST00000538218.1|ETNK1|ENSG00000139163.11|ethanolamine kinase 1
hg19_v2_chr10_+_71444655_71444655	0.135902	SOX3_SOX2	ENST00000434931.2|RP11-242G20.1|ENSG00000235645.2|Uncharacterized protein
hg19_v2_chr1_+_147400506_147400549	0.135807	SOX3_SOX2	ENST00000314163.7|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B 	ENST00000468618.2|GPR89B|ENSG00000188092.10|G protein-coupled receptor 89B
hg19_v2_chr12_-_12419905_12419989	0.135383	SOX3_SOX2	ENST00000535731.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr2_+_170590321_170590408	0.135014	SOX3_SOX2	ENST00000392647.2|KLHL23|ENSG00000213160.5|kelch-like family member 23
hg19_v2_chr12_+_18891045_18891066	0.134136	SOX3_SOX2	ENST00000317658.3|CAPZA3|ENSG00000177938.3|capping protein (actin filament) muscle Z-line, alpha 3
hg19_v2_chr1_+_6673745_6673830	0.133411	SOX3_SOX2	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr11_-_45939565_45939606	0.132926	SOX3_SOX2	ENST00000525192.1|PEX16|ENSG00000121680.11|peroxisomal biogenesis factor 16 	ENST00000378750.5|PEX16|ENSG00000121680.11|peroxisomal biogenesis factor 16
hg19_v2_chr2_-_207024233_207024327	0.132147	SOX3_SOX2	ENST00000423725.1|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 	ENST00000233190.6|NDUFS1|ENSG00000023228.9|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
hg19_v2_chr12_+_90313394_90313469	0.13199	SOX3_SOX2	ENST00000549551.1|RP11-654D12.2|ENSG00000258216.1|RP11-654D12.2
hg19_v2_chr1_+_104198377_104198377	0.131826	SOX3_SOX2	ENST00000370083.4|AMY1A|ENSG00000237763.5|amylase, alpha 1A (salivary)
hg19_v2_chr9_+_125703282_125703337	0.131237	SOX3_SOX2	ENST00000373647.4|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1 	ENST00000402311.1|RABGAP1|ENSG00000011454.12|RAB GTPase activating protein 1
hg19_v2_chr15_+_96869165_96869183	0.131111	SOX3_SOX2	ENST00000421109.2|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr11_+_18154059_18154135	0.130895	SOX3_SOX2	ENST00000531264.1|MRGPRX3|ENSG00000179826.5|MAS-related GPR, member X3
hg19_v2_chr7_-_128171123_128171144	0.130617	SOX3_SOX2	ENST00000608477.1|RP11-212P7.2|ENSG00000273270.1|RP11-212P7.2
hg19_v2_chr8_+_21777243_21777275	0.130388	SOX3_SOX2	ENST00000521303.1|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr15_-_59500973_59500990	0.130164	SOX3_SOX2	ENST00000560749.1|MYO1E|ENSG00000157483.4|myosin IE
hg19_v2_chr1_+_35734562_35734573	0.129833	SOX3_SOX2	ENST00000314607.6|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4 	ENST00000373297.2|ZMYM4|ENSG00000146463.7|zinc finger, MYM-type 4
hg19_v2_chr6_-_160210715_160210781	0.128493	SOX3_SOX2	ENST00000392168.2|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000321394.7|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr7_+_48211048_48211063	0.127858	SOX3_SOX2	ENST00000435803.1|ABCA13|ENSG00000179869.10|ATP-binding cassette, sub-family A (ABC1), member 13
hg19_v2_chr9_+_103189405_103189455	0.127527	SOX3_SOX2	ENST00000395067.2|MSANTD3|ENSG00000066697.10|Myb/SANT-like DNA-binding domain containing 3
hg19_v2_chr12_-_93836028_93836039	0.127108	SOX3_SOX2	ENST00000318066.2|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr7_+_99613195_99613206	0.126585	SOX3_SOX2	ENST00000324306.6|ZKSCAN1|ENSG00000106261.12|zinc finger with KRAB and SCAN domains 1
hg19_v2_chr1_-_41487415_41487426	0.12508	SOX3_SOX2	ENST00000372611.1|SLFNL1|ENSG00000171790.11|schlafen-like 1
hg19_v2_chr19_-_39264072_39264132	0.123205	SOX3_SOX2	ENST00000599035.1|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7 	ENST00000378626.4|LGALS7|ENSG00000205076.4|lectin, galactoside-binding, soluble, 7
hg19_v2_chr6_-_134639042_134639056	0.123126	SOX3_SOX2	ENST00000461976.2|SGK1|ENSG00000118515.7|serum/glucocorticoid regulated kinase 1
hg19_v2_chr10_+_180405_180429	0.123123	SOX3_SOX2	ENST00000439456.1|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000397962.3|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000309776.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11 	ENST00000381602.4|ZMYND11|ENSG00000015171.14|zinc finger, MYND-type containing 11
hg19_v2_chr5_+_60933634_60933637	0.121574	SOX3_SOX2	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr6_-_160210692_160210705	0.121311	SOX3_SOX2	ENST00000538128.1|TCP1|ENSG00000120438.7|t-complex 1 	ENST00000537390.1|TCP1|ENSG00000120438.7|t-complex 1
hg19_v2_chr4_-_170192185_170192256	0.121228	SOX3_SOX2	ENST00000284637.9|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr4_-_53617798_53617813	0.120846	SOX3_SOX2	ENST00000443173.1|ERVMER34-1|ENSG00000226887.3|endogenous retrovirus group MER34, member 1
hg19_v2_chr12_-_22063787_22063912	0.120405	SOX3_SOX2	ENST00000544039.1|ABCC9|ENSG00000069431.6|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
hg19_v2_chr3_+_193310918_193310934	0.119468	SOX3_SOX2	ENST00000361908.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000392438.3|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361510.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361715.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361828.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant) 	ENST00000361150.2|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr2_-_160568529_160568563	0.117532	SOX3_SOX2	ENST00000418770.1|AC009961.3|ENSG00000226266.2|AC009961.3
hg19_v2_chr4_+_113152881_113152912	0.117519	SOX3_SOX2	ENST00000274000.5|AP1AR|ENSG00000138660.7|adaptor-related protein complex 1 associated regulatory protein
hg19_v2_chr20_+_62716348_62716369	0.117092	SOX3_SOX2	ENST00000349451.3|OPRL1|ENSG00000125510.11|opiate receptor-like 1
hg19_v2_chr11_-_58612168_58612257	0.116385	SOX3_SOX2	ENST00000287275.1|GLYATL2|ENSG00000156689.2|glycine-N-acyltransferase-like 2
hg19_v2_chr3_-_69370095_69370115	0.116356	SOX3_SOX2	ENST00000473029.1|FRMD4B|ENSG00000114541.10|FERM domain containing 4B
hg19_v2_chr11_-_5810046_5810046	0.116155	SOX3_SOX2	ENST00000317078.1|OR52N1|ENSG00000181001.1|olfactory receptor, family 52, subfamily N, member 1
hg19_v2_chr16_+_31191431_31191472	0.114458	SOX3_SOX2	ENST00000254108.7|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000380244.3|FUS|ENSG00000089280.14|fused in sarcoma 	ENST00000568685.1|FUS|ENSG00000089280.14|fused in sarcoma
hg19_v2_chr14_+_101123580_101123695	0.114405	SOX3_SOX2	ENST00000556697.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000360899.2|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523 	ENST00000553623.1|LINC00523|ENSG00000196273.3|long intergenic non-protein coding RNA 523
hg19_v2_chr8_-_42752418_42752452	0.113995	SOX3_SOX2	ENST00000524954.1|RNF170|ENSG00000120925.9|ring finger protein 170
hg19_v2_chr10_+_24755416_24755470	0.11349	SOX3_SOX2	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr1_-_116311402_116311413	0.113452	SOX3_SOX2	ENST00000261448.5|CASQ2|ENSG00000118729.10|calsequestrin 2 (cardiac muscle)
hg19_v2_chr20_-_45985414_45985462	0.113367	SOX3_SOX2	ENST00000461685.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000372023.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000540497.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000435836.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000471951.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000352431.2|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000396281.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000355972.4|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8 	ENST00000360911.3|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr17_-_3030875_3030875	0.112336	SOX3_SOX2	ENST00000328890.2|OR1G1|ENSG00000183024.3|olfactory receptor, family 1, subfamily G, member 1
hg19_v2_chr6_+_56911336_56911347	0.112324	SOX3_SOX2	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr20_+_43211149_43211266	0.111918	SOX3_SOX2	ENST00000372886.1|PKIG|ENSG00000168734.9|protein kinase (cAMP-dependent, catalytic) inhibitor gamma
hg19_v2_chr3_+_130612803_130612877	0.11188	SOX3_SOX2	ENST00000510168.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000508532.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_+_47881744_47881744	0.111722	SOX3_SOX2	ENST00000335071.2|FOXE3|ENSG00000186790.4|forkhead box E3
hg19_v2_chr9_+_101705893_101705921	0.111559	SOX3_SOX2	ENST00000375001.3|COL15A1|ENSG00000204291.6|collagen, type XV, alpha 1
hg19_v2_chr5_+_172386419_172386480	0.111108	SOX3_SOX2	ENST00000265100.2|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1 	ENST00000519239.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr7_+_128312346_128312371	0.110986	SOX3_SOX2	ENST00000480462.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000378704.3|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2 	ENST00000477515.1|FAM71F2|ENSG00000205085.4|family with sequence similarity 71, member F2
hg19_v2_chr19_+_49467232_49467266	0.110592	SOX3_SOX2	ENST00000599784.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9	ENST00000594305.1|CTD-2639E6.9|ENSG00000267898.1|CTD-2639E6.9
hg19_v2_chr21_+_37402368_37402368	0.110396	SOX3_SOX2	ENST00000600312.1|AP000688.1|ENSG00000268098.1|Uncharacterized protein
hg19_v2_chr8_-_125869733_125869758	0.109953	SOX3_SOX2	ENST00000533496.1|RP11-1082L8.3|ENSG00000255080.1|RP11-1082L8.3
hg19_v2_chr19_-_58400148_58400364	0.109263	SOX3_SOX2	ENST00000595048.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000600634.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000595295.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000596604.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597342.1|ZNF814|ENSG00000204514.5|zinc finger protein 814 	ENST00000597807.1|ZNF814|ENSG00000204514.5|zinc finger protein 814
hg19_v2_chr11_-_95522639_95522725	0.108809	SOX3_SOX2	ENST00000536839.1|FAM76B|ENSG00000077458.8|family with sequence similarity 76, member B
hg19_v2_chr3_+_145782358_145782358	0.1085	SOX3_SOX2	ENST00000422482.1|AC107021.1|ENSG00000232013.1|HCG1786590; PRO2533; Uncharacterized protein
hg19_v2_chr18_-_53253112_53253199	0.108395	SOX3_SOX2	ENST00000568673.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000562847.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000568147.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr5_-_83016632_83016681	0.107912	SOX3_SOX2	ENST00000515590.1|HAPLN1|ENSG00000145681.6|hyaluronan and proteoglycan link protein 1
hg19_v2_chr6_+_134274322_134274342	0.107401	SOX3_SOX2	ENST00000367871.1|TBPL1|ENSG00000028839.5|TBP-like 1 	ENST00000237264.4|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr4_+_118955500_118955612	0.106762	SOX3_SOX2	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr17_-_27278304_27278408	0.106698	SOX3_SOX2	ENST00000577226.1|PHF12|ENSG00000109118.9|PHD finger protein 12
hg19_v2_chr16_+_2880254_2880278	0.106564	SOX3_SOX2	ENST00000570670.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr9_+_131902283_131902288	0.105414	SOX3_SOX2	ENST00000436883.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000414510.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr2_-_100721923_100722045	0.105246	SOX3_SOX2	ENST00000356421.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr12_+_133707204_133707236	0.104911	SOX3_SOX2	ENST00000426665.2|ZNF10|ENSG00000256223.1|zinc finger protein 10
hg19_v2_chr15_+_92937144_92937295	0.104782	SOX3_SOX2	ENST00000539113.1|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 	ENST00000555434.1|ST8SIA2|ENSG00000140557.7|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
hg19_v2_chr10_-_73848764_73848795	0.104696	SOX3_SOX2	ENST00000317376.4|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 	ENST00000412663.1|SPOCK2|ENSG00000107742.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2
hg19_v2_chrX_+_107288239_107288259	0.104652	SOX3_SOX2	ENST00000217957.5|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
hg19_v2_chr7_-_84121858_84121870	0.103053	SOX3_SOX2	ENST00000448879.1|SEMA3A|ENSG00000075213.6|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
hg19_v2_chr9_+_82267508_82267551	0.102774	SOX3_SOX2	ENST00000490347.1|TLE4|ENSG00000106829.14|transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
hg19_v2_chr19_+_21203426_21203475	0.101712	SOX3_SOX2	ENST00000261560.5|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000599548.1|ZNF430|ENSG00000118620.8|zinc finger protein 430 	ENST00000594110.1|ZNF430|ENSG00000118620.8|zinc finger protein 430
hg19_v2_chr5_+_74907284_74907284	0.101635	SOX3_SOX2	ENST00000601380.2|ANKDD1B|ENSG00000189045.9|ankyrin repeat and death domain containing 1B
hg19_v2_chr4_+_54243862_54243874	0.100274	SOX3_SOX2	ENST00000306932.6|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr9_-_35563896_35563911	0.0998428	SOX3_SOX2	ENST00000399742.2|FAM166B|ENSG00000215187.5|family with sequence similarity 166, member B
hg19_v2_chr1_-_145827015_145827103	0.0996733	SOX3_SOX2	ENST00000534502.1|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000313835.9|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A 	ENST00000454423.3|GPR89A|ENSG00000117262.14|G protein-coupled receptor 89A
hg19_v2_chr17_-_26301249_26301266	0.0993552	SOX3_SOX2	ENST00000567574.1|RP11-218F4.1|ENSG00000260019.1|RP11-218F4.1
hg19_v2_chr19_-_9811347_9811452	0.0989776	SOX3_SOX2	ENST00000585964.1|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000457674.2|ZNF812|ENSG00000224689.3|zinc finger protein 812 	ENST00000590544.1|ZNF812|ENSG00000224689.3|zinc finger protein 812
hg19_v2_chr3_+_46616017_46616045	0.0989283	SOX3_SOX2	ENST00000542931.1|TDGF1|ENSG00000241186.3|teratocarcinoma-derived growth factor 1
hg19_v2_chr10_+_91174314_91174403	0.0988494	SOX3_SOX2	ENST00000371795.4|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr14_+_77882741_77882741	0.0983563	SOX3_SOX2	ENST00000595520.1|FKSG61|ENSG00000268156.1|FKSG61
hg19_v2_chr6_+_160183492_160183523	0.0983073	SOX3_SOX2	ENST00000541436.1|ACAT2|ENSG00000120437.7|acetyl-CoA acetyltransferase 2
hg19_v2_chr9_+_71819927_71820053	0.0975669	SOX3_SOX2	ENST00000535702.1|TJP2|ENSG00000119139.12|tight junction protein 2
hg19_v2_chr1_+_32930647_32930684	0.0974564	SOX3_SOX2	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr11_+_4608021_4608021	0.0972537	SOX3_SOX2	ENST00000312614.4|OR52I2|ENSG00000226288.1|olfactory receptor, family 52, subfamily I, member 2
hg19_v2_chr3_+_50192537_50192563	0.096143	SOX3_SOX2	ENST00000002829.3|SEMA3F|ENSG00000001617.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
hg19_v2_chr14_+_96343100_96343115	0.0959118	SOX3_SOX2	ENST00000503525.2|LINC00617|ENSG00000250366.2|long intergenic non-protein coding RNA 617
hg19_v2_chr9_+_27109392_27109435	0.0958624	SOX3_SOX2	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr12_-_50790267_50790405	0.0956428	SOX3_SOX2	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr3_-_149510553_149510610	0.0952029	SOX3_SOX2	ENST00000462519.2|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000446160.1|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1 	ENST00000383050.3|ANKUB1|ENSG00000206199.5|ankyrin repeat and ubiquitin domain containing 1
hg19_v2_chr2_-_39664206_39664251	0.0950443	SOX3_SOX2	ENST00000484274.1|MAP4K3|ENSG00000011566.10|mitogen-activated protein kinase kinase kinase kinase 3
hg19_v2_chrX_+_46306624_46306709	0.0945416	SOX3_SOX2	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr9_+_117904097_117904097	0.094517	SOX3_SOX2	ENST00000374016.1|DEC1|ENSG00000173077.10|deleted in esophageal cancer 1
hg19_v2_chr20_+_58713514_58713554	0.0939197	SOX3_SOX2	ENST00000432910.1|RP5-1043L13.1|ENSG00000228340.1|RP5-1043L13.1
hg19_v2_chr21_+_33784670_33784696	0.0936402	SOX3_SOX2	ENST00000300255.2|EVA1C|ENSG00000166979.8|eva-1 homolog C (C. elegans)
hg19_v2_chr12_-_54673871_54673925	0.0936006	SOX3_SOX2	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr11_+_46402482_46402502	0.0935743	SOX3_SOX2	ENST00000441869.1|MDK|ENSG00000110492.11|midkine (neurite growth-promoting factor 2)
hg19_v2_chr17_-_74287333_74287333	0.0933348	SOX3_SOX2	ENST00000447564.2|QRICH2|ENSG00000129646.9|glutamine rich 2
hg19_v2_chr3_-_123680246_123680264	0.0926943	SOX3_SOX2	ENST00000488653.2|CCDC14|ENSG00000175455.10|coiled-coil domain containing 14
hg19_v2_chr1_+_69521581_69521593	0.0926213	SOX3_SOX2	ENST00000425517.1|RP11-424D14.1|ENSG00000223883.1|RP11-424D14.1
hg19_v2_chrX_-_69509738_69509829	0.0925547	SOX3_SOX2	ENST00000374454.1|PDZD11|ENSG00000120509.6|PDZ domain containing 11 	ENST00000239666.4|PDZD11|ENSG00000120509.6|PDZ domain containing 11
hg19_v2_chrX_+_46404928_46404964	0.0924833	SOX3_SOX2	ENST00000421685.2|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head) 	ENST00000609887.1|ZNF674-AS1|ENSG00000230844.2|ZNF674 antisense RNA 1 (head to head)
hg19_v2_chr7_-_26578407_26578451	0.0912173	SOX3_SOX2	ENST00000242109.3|KIAA0087|ENSG00000122548.3|KIAA0087
hg19_v2_chr1_-_161015752_161015778	0.0900059	SOX3_SOX2	ENST00000435396.1|USF1|ENSG00000158773.10|upstream transcription factor 1 	ENST00000368021.3|USF1|ENSG00000158773.10|upstream transcription factor 1
hg19_v2_chr2_-_178128528_178128574	0.0898933	SOX3_SOX2	ENST00000397063.4|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2 	ENST00000421929.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr14_-_50999307_50999367	0.0894748	SOX3_SOX2	ENST00000013125.4|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr20_-_30433396_30433420	0.0884096	SOX3_SOX2	ENST00000375978.3|FOXS1|ENSG00000179772.6|forkhead box S1
hg19_v2_chr18_-_9614863_9614898	0.0868003	SOX3_SOX2	ENST00000584074.1|PPP4R1|ENSG00000154845.11|protein phosphatase 4, regulatory subunit 1
hg19_v2_chr19_-_45004556_45004581	0.0867189	SOX3_SOX2	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr13_-_45150392_45150472	0.0864325	SOX3_SOX2	ENST00000501704.2|TSC22D1|ENSG00000102804.10|TSC22 domain family, member 1
hg19_v2_chr4_+_175204818_175204833	0.0858034	SOX3_SOX2	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr5_+_119867159_119867240	0.0857125	SOX3_SOX2	ENST00000505123.1|PRR16|ENSG00000184838.10|proline rich 16
hg19_v2_chr11_-_18548426_18548500	0.085507	SOX3_SOX2	ENST00000357193.3|TSG101|ENSG00000074319.8|tumor susceptibility 101 	ENST00000536719.1|TSG101|ENSG00000074319.8|tumor susceptibility 101
hg19_v2_chr7_-_6388389_6388531	0.0849201	SOX3_SOX2	ENST00000578372.1|FAM220A|ENSG00000178397.8|family with sequence similarity 220, member A
hg19_v2_chr1_-_167883353_167883453	0.0838319	SOX3_SOX2	ENST00000545172.1|ADCY10|ENSG00000143199.13|adenylate cyclase 10 (soluble)
hg19_v2_chr22_-_31742218_31742350	0.0829938	SOX3_SOX2	ENST00000266269.5|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000405309.3|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1 	ENST00000351933.4|PATZ1|ENSG00000100105.13|POZ (BTB) and AT hook containing zinc finger 1
hg19_v2_chr17_-_39183452_39183468	0.082198	SOX3_SOX2	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr20_-_43150601_43150751	0.0816332	SOX3_SOX2	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr19_-_20150014_20150085	0.081019	SOX3_SOX2	ENST00000358523.5|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000397162.1|ZNF682|ENSG00000197124.7|zinc finger protein 682 	ENST00000601100.1|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr16_+_31724618_31724630	0.0809739	SOX3_SOX2	ENST00000530881.1|ZNF720|ENSG00000197302.6|zinc finger protein 720 	ENST00000529515.1|ZNF720|ENSG00000197302.6|zinc finger protein 720
hg19_v2_chr1_+_170632250_170632277	0.0806507	SOX3_SOX2	ENST00000367760.3|PRRX1|ENSG00000116132.7|paired related homeobox 1
hg19_v2_chr1_-_23495303_23495338	0.0805416	SOX3_SOX2	ENST00000314174.5|LUZP1|ENSG00000169641.9|leucine zipper protein 1 	ENST00000471849.1|LUZP1|ENSG00000169641.9|leucine zipper protein 1
hg19_v2_chr5_+_172386517_172386523	0.0804785	SOX3_SOX2	ENST00000519522.1|RPL26L1|ENSG00000037241.3|ribosomal protein L26-like 1
hg19_v2_chr4_-_169239921_169239972	0.0796771	SOX3_SOX2	ENST00000514995.1|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 	ENST00000393743.3|DDX60|ENSG00000137628.12|DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
hg19_v2_chr8_-_117043_117043	0.0792184	SOX3_SOX2	ENST00000320901.3|OR4F21|ENSG00000176269.3|olfactory receptor, family 4, subfamily F, member 21
hg19_v2_chr16_-_74455290_74455290	0.0792017	SOX3_SOX2	ENST00000339953.5|CLEC18B|ENSG00000140839.7|C-type lectin domain family 18, member B
hg19_v2_chr10_-_61718429_61718429	0.07893	SOX3_SOX2	ENST00000430888.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40
hg19_v2_chr13_+_113030658_113030702	0.0785091	SOX3_SOX2	ENST00000414180.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7 	ENST00000443541.1|SPACA7|ENSG00000153498.7|sperm acrosome associated 7
hg19_v2_chr8_-_144674284_144674339	0.0775875	SOX3_SOX2	ENST00000528519.1|EEF1D|ENSG00000104529.13|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
hg19_v2_chr1_+_167063282_167063325	0.0768312	SOX3_SOX2	ENST00000361200.2|DUSP27|ENSG00000198842.5|dual specificity phosphatase 27 (putative)
hg19_v2_chr1_+_93913665_93913705	0.0764879	SOX3_SOX2	ENST00000271234.7|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370256.4|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000260506.8|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr4_+_15683369_15683390	0.0764561	SOX3_SOX2	ENST00000503617.1|FAM200B|ENSG00000237765.2|family with sequence similarity 200, member B
hg19_v2_chr16_+_2880296_2880310	0.0756436	SOX3_SOX2	ENST00000571723.1|ZG16B|ENSG00000162078.7|zymogen granule protein 16B
hg19_v2_chr10_+_18948311_18948417	0.0754353	SOX3_SOX2	ENST00000377275.3|ARL5B|ENSG00000165997.4|ADP-ribosylation factor-like 5B
hg19_v2_chr6_-_111136513_111136525	0.0752754	SOX3_SOX2	ENST00000368911.3|CDK19|ENSG00000155111.10|cyclin-dependent kinase 19
hg19_v2_chr16_-_71598823_71598992	0.0749534	SOX3_SOX2	ENST00000566202.1|ZNF19|ENSG00000157429.11|zinc finger protein 19
hg19_v2_chr4_-_77996032_77996068	0.0747526	SOX3_SOX2	ENST00000505609.1|CCNI|ENSG00000118816.5|cyclin I
hg19_v2_chr4_+_184580420_184580485	0.0743786	SOX3_SOX2	ENST00000334690.6|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11 	ENST00000357207.4|TRAPPC11|ENSG00000168538.11|trafficking protein particle complex 11
hg19_v2_chr2_+_71127699_71127744	0.0742193	SOX3_SOX2	ENST00000234392.2|VAX2|ENSG00000116035.2|ventral anterior homeobox 2
hg19_v2_chr4_+_89444961_89445032	0.0738027	SOX3_SOX2	ENST00000513325.1|HERC3|ENSG00000138641.11|HECT and RLD domain containing E3 ubiquitin protein ligase 3
hg19_v2_chr9_+_90112741_90112761	0.0727494	SOX3_SOX2	ENST00000469640.2|DAPK1|ENSG00000196730.8|death-associated protein kinase 1
hg19_v2_chr10_+_97759848_97759883	0.0723059	SOX3_SOX2	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr1_-_157108266_157108347	0.0722011	SOX3_SOX2	ENST00000326786.4|ETV3|ENSG00000117036.7|ets variant 3
hg19_v2_chr1_+_204494618_204494676	0.0720346	SOX3_SOX2	ENST00000367180.1|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse) 	ENST00000391947.2|MDM4|ENSG00000198625.8|Mdm4 p53 binding protein homolog (mouse)
hg19_v2_chr18_+_29078131_29078218	0.0716615	SOX3_SOX2	ENST00000585206.1|DSG2|ENSG00000046604.8|desmoglein 2
hg19_v2_chr8_-_73793975_73794038	0.0714629	SOX3_SOX2	ENST00000523881.1|RP11-1145L24.1|ENSG00000253784.1|RP11-1145L24.1
hg19_v2_chr19_-_48673552_48673578	0.0711729	SOX3_SOX2	ENST00000536218.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent 	ENST00000596549.1|LIG1|ENSG00000105486.9|ligase I, DNA, ATP-dependent
hg19_v2_chr16_+_2083265_2083303	0.0707954	SOX3_SOX2	ENST00000565855.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 	ENST00000566198.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr5_+_134094461_134094494	0.0707763	SOX3_SOX2	ENST00000452510.2|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENST00000354283.4|DDX46|ENSG00000145833.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
hg19_v2_chr13_-_99852916_99852964	0.0707616	SOX3_SOX2	ENST00000426037.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1 	ENST00000445737.2|UBAC2-AS1|ENSG00000228889.2|UBAC2 antisense RNA 1
hg19_v2_chr14_+_21566980_21567097	0.0706981	SOX3_SOX2	ENST00000418511.2|TMEM253|ENSG00000232070.4|transmembrane protein 253 	ENST00000554329.2|TMEM253|ENSG00000232070.4|transmembrane protein 253
hg19_v2_chr1_+_112298514_112298550	0.0697058	SOX3_SOX2	ENST00000536167.1|DDX20|ENSG00000064703.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
hg19_v2_chr12_-_104350898_104351051	0.0693836	SOX3_SOX2	ENST00000552940.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547975.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000549478.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546540.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000546819.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000378090.4|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73 	ENST00000547945.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr6_-_46048116_46048132	0.0685043	SOX3_SOX2	ENST00000185206.6|CLIC5|ENSG00000112782.11|chloride intracellular channel 5
hg19_v2_chr5_-_137514333_137514367	0.0679718	SOX3_SOX2	ENST00000411594.2|BRD8|ENSG00000112983.13|bromodomain containing 8 	ENST00000430331.1|BRD8|ENSG00000112983.13|bromodomain containing 8
hg19_v2_chr1_+_32666188_32666274	0.0678349	SOX3_SOX2	ENST00000421922.2|CCDC28B|ENSG00000160050.10|coiled-coil domain containing 28B
hg19_v2_chr16_+_69984810_69984889	0.0674022	SOX3_SOX2	ENST00000393701.2|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A 	ENST00000568461.1|CLEC18A|ENSG00000157322.12|C-type lectin domain family 18, member A
hg19_v2_chr14_+_32546274_32546295	0.0670101	SOX3_SOX2	ENST00000396582.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr20_-_3996165_3996245	0.0668899	SOX3_SOX2	ENST00000545616.2|RNF24|ENSG00000101236.12|ring finger protein 24 	ENST00000358395.6|RNF24|ENSG00000101236.12|ring finger protein 24
hg19_v2_chr2_-_232329186_232329305	0.0668855	SOX3_SOX2	ENST00000322723.4|NCL|ENSG00000115053.11|nucleolin
hg19_v2_chr8_-_53477968_53478067	0.0662906	SOX3_SOX2	ENST00000523939.1|FAM150A|ENSG00000196711.4|family with sequence similarity 150, member A 	ENST00000358543.4|FAM150A|ENSG00000196711.4|family with sequence similarity 150, member A
hg19_v2_chr3_+_193311056_193311087	0.0656711	SOX3_SOX2	ENST00000419435.1|OPA1|ENSG00000198836.4|optic atrophy 1 (autosomal dominant)
hg19_v2_chr16_-_85146040_85146114	0.0652652	SOX3_SOX2	ENST00000539556.1|FAM92B|ENSG00000153789.8|family with sequence similarity 92, member B
hg19_v2_chr20_-_1165319_1165319	0.0650712	SOX3_SOX2	ENST00000429036.1|TMEM74B|ENSG00000125895.5|transmembrane protein 74B
hg19_v2_chr7_+_12726474_12726542	0.0645345	SOX3_SOX2	ENST00000396662.1|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000356797.3|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A 	ENST00000396664.2|ARL4A|ENSG00000122644.8|ADP-ribosylation factor-like 4A
hg19_v2_chr3_-_194354010_194354164	0.0644261	SOX3_SOX2	ENST00000381975.3|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000347147.4|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000473092.1|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000392432.2|TMEM44|ENSG00000145014.13|transmembrane protein 44 	ENST00000273580.7|TMEM44|ENSG00000145014.13|transmembrane protein 44
hg19_v2_chr8_+_104427581_104427677	0.0641251	SOX3_SOX2	ENST00000521716.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000521971.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13 	ENST00000519682.1|DCAF13|ENSG00000164934.9|DDB1 and CUL4 associated factor 13
hg19_v2_chr3_-_114173530_114173571	0.0635761	SOX3_SOX2	ENST00000470311.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr11_-_94227029_94227074	0.0629626	SOX3_SOX2	ENST00000323977.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000536754.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000323929.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr10_+_24498060_24498102	0.0620487	SOX3_SOX2	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr7_+_73868220_73868300	0.0617566	SOX3_SOX2	ENST00000455841.2|GTF2IRD1|ENSG00000006704.6|GTF2I repeat domain containing 1
hg19_v2_chr3_-_125775629_125775681	0.0616175	SOX3_SOX2	ENST00000383598.2|SLC41A3|ENSG00000114544.11|solute carrier family 41, member 3
hg19_v2_chr7_-_144107320_144107320	0.0613585	SOX3_SOX2	ENST00000483238.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox 	ENST00000467773.1|NOBOX|ENSG00000106410.10|NOBOX oogenesis homeobox
hg19_v2_chr18_-_53253323_53253359	0.0603829	SOX3_SOX2	ENST00000540999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000563888.2|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr15_+_74908228_74908247	0.0599224	SOX3_SOX2	ENST00000566126.1|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr11_-_3400330_3400422	0.0597716	SOX3_SOX2	ENST00000427810.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000005082.9|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000534569.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000438262.2|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528796.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000528410.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000529678.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000354599.6|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000526601.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000525502.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000533036.1|ZNF195|ENSG00000005801.12|zinc finger protein 195 	ENST00000399602.4|ZNF195|ENSG00000005801.12|zinc finger protein 195
hg19_v2_chr7_+_5938351_5938379	0.0595778	SOX3_SOX2	ENST00000325974.6|CCZ1|ENSG00000122674.8|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
hg19_v2_chr1_+_43766642_43766667	0.0579638	SOX3_SOX2	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chrX_-_119603138_119603220	0.0575483	SOX3_SOX2	ENST00000200639.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000371335.4|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000538785.1|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2 	ENST00000434600.2|LAMP2|ENSG00000005893.11|lysosomal-associated membrane protein 2
hg19_v2_chr6_+_134274354_134274371	0.0571774	SOX3_SOX2	ENST00000367869.1|TBPL1|ENSG00000028839.5|TBP-like 1
hg19_v2_chr9_+_131902346_131902404	0.0538525	SOX3_SOX2	ENST00000432124.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4 	ENST00000435305.1|PPP2R4|ENSG00000119383.15|protein phosphatase 2A activator, regulatory subunit 4
hg19_v2_chr12_-_58145889_58145914	0.0537194	SOX3_SOX2	ENST00000547853.1|CDK4|ENSG00000135446.12|cyclin-dependent kinase 4
hg19_v2_chr15_+_41709302_41709348	0.0519822	SOX3_SOX2	ENST00000389629.4|RTF1|ENSG00000137815.10|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chrX_-_85302531_85302570	0.0517325	SOX3_SOX2	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr7_-_149158187_149158214	0.0515636	SOX3_SOX2	ENST00000247930.4|ZNF777|ENSG00000196453.7|zinc finger protein 777
hg19_v2_chr8_-_86253888_86253944	0.0511966	SOX3_SOX2	ENST00000522389.1|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000432364.2|CA1|ENSG00000133742.9|carbonic anhydrase I 	ENST00000517618.1|CA1|ENSG00000133742.9|carbonic anhydrase I
hg19_v2_chr16_-_2837949_2837949	0.0508273	SOX3_SOX2	ENST00000570702.1|PRSS33|ENSG00000103355.8|protease, serine, 33
hg19_v2_chr4_+_88343952_88343970	0.050565	SOX3_SOX2	ENST00000440591.2|NUDT9|ENSG00000170502.8|nudix (nucleoside diphosphate linked moiety X)-type motif 9
hg19_v2_chr15_-_52263937_52264003	0.0494125	SOX3_SOX2	ENST00000315141.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 	ENST00000299601.5|LEO1|ENSG00000166477.8|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
hg19_v2_chr4_-_174256276_174256303	0.0490604	SOX3_SOX2	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr20_-_45318230_45318418	0.0488269	SOX3_SOX2	ENST00000372114.3|TP53RK|ENSG00000172315.5|TP53 regulating kinase
hg19_v2_chr11_-_85430356_85430420	0.0487189	SOX3_SOX2	ENST00000526999.1|SYTL2|ENSG00000137501.12|synaptotagmin-like 2
hg19_v2_chr22_-_17602143_17602175	0.0473486	SOX3_SOX2	ENST00000331437.3|CECR6|ENSG00000183307.3|cat eye syndrome chromosome region, candidate 6
hg19_v2_chr2_-_237150258_237150258	0.0469865	SOX3_SOX2	ENST00000330842.6|ASB18|ENSG00000182177.9|ankyrin repeat and SOCS box containing 18
hg19_v2_chr14_-_35099315_35099369	0.0463562	SOX3_SOX2	ENST00000396526.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000396534.3|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000355110.5|SNX6|ENSG00000129515.14|sorting nexin 6 	ENST00000557265.1|SNX6|ENSG00000129515.14|sorting nexin 6
hg19_v2_chr14_-_23652849_23652883	0.0456651	SOX3_SOX2	ENST00000316902.7|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000469263.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000525062.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8 	ENST00000524758.1|SLC7A8|ENSG00000092068.14|solute carrier family 7 (amino acid transporter light chain, L system), member 8
hg19_v2_chr10_+_123923105_123923160	0.0453003	SOX3_SOX2	ENST00000368999.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr19_-_20150301_20150321	0.0448543	SOX3_SOX2	ENST00000397165.2|ZNF682|ENSG00000197124.7|zinc finger protein 682
hg19_v2_chr14_+_20248401_20248401	0.0445337	SOX3_SOX2	ENST00000315957.4|OR4M1|ENSG00000176299.4|olfactory receptor, family 4, subfamily M, member 1
hg19_v2_chr10_-_81708854_81708867	0.0444998	SOX3_SOX2	ENST00000372292.3|SFTPD|ENSG00000133661.11|surfactant protein D
hg19_v2_chr2_-_38829768_38829825	0.0443902	SOX3_SOX2	ENST00000378915.3|HNRNPLL|ENSG00000143889.11|heterogeneous nuclear ribonucleoprotein L-like
hg19_v2_chr9_+_27109133_27109187	0.0443661	SOX3_SOX2	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr12_-_104359475_104359513	0.0443072	SOX3_SOX2	ENST00000553183.1|C12orf73|ENSG00000204954.5|chromosome 12 open reading frame 73
hg19_v2_chr19_+_7580944_7581031	0.0442953	SOX3_SOX2	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr3_-_64009658_64009687	0.0440937	SOX3_SOX2	ENST00000394431.2|PSMD6|ENSG00000163636.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
hg19_v2_chr7_+_150690857_150690892	0.0440674	SOX3_SOX2	ENST00000484524.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell) 	ENST00000467517.1|NOS3|ENSG00000164867.6|nitric oxide synthase 3 (endothelial cell)
hg19_v2_chr1_-_145589424_145589471	0.043672	SOX3_SOX2	ENST00000334513.5|NUDT17|ENSG00000186364.7|nudix (nucleoside diphosphate linked moiety X)-type motif 17
hg19_v2_chr7_+_30068260_30068301	0.0433838	SOX3_SOX2	ENST00000440706.2|PLEKHA8|ENSG00000106086.14|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
hg19_v2_chr18_-_29340827_29340845	0.0432497	SOX3_SOX2	ENST00000269205.5|SLC25A52|ENSG00000141437.7|solute carrier family 25, member 52
hg19_v2_chr13_-_113242439_113242488	0.0416857	SOX3_SOX2	ENST00000375669.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3 	ENST00000261965.3|TUBGCP3|ENSG00000126216.8|tubulin, gamma complex associated protein 3
hg19_v2_chr5_+_125935960_125935960	0.0416741	SOX3_SOX2	ENST00000297540.4|PHAX|ENSG00000164902.9|phosphorylated adaptor for RNA export
hg19_v2_chr11_-_71752571_71752598	0.0406672	SOX3_SOX2	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr4_+_175204865_175204915	0.0405416	SOX3_SOX2	ENST00000505124.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr5_+_69321074_69321200	0.0404761	SOX3_SOX2	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr16_+_68573640_68573698	0.040052	SOX3_SOX2	ENST00000398253.2|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein 	ENST00000573161.1|ZFP90|ENSG00000184939.11|ZFP90 zinc finger protein
hg19_v2_chr1_-_108786689_108786689	0.0400209	SOX3_SOX2	ENST00000415641.3|NBPF4|ENSG00000196427.9|neuroblastoma breakpoint family, member 4
hg19_v2_chr10_+_91174486_91174528	0.040012	SOX3_SOX2	ENST00000416601.1|IFIT5|ENSG00000152778.7|interferon-induced protein with tetratricopeptide repeats 5
hg19_v2_chr22_-_42336209_42336228	0.0393186	SOX3_SOX2	ENST00000472374.2|CENPM|ENSG00000100162.10|centromere protein M
hg19_v2_chr12_-_127630534_127630626	0.0378457	SOX3_SOX2	ENST00000535022.1|RP11-575F12.2|ENSG00000256001.1|RP11-575F12.2
hg19_v2_chr2_+_32288657_32288688	0.0377813	SOX3_SOX2	ENST00000345662.1|SPAST|ENSG00000021574.7|spastin
hg19_v2_chr3_-_114343768_114343822	0.0375925	SOX3_SOX2	ENST00000393785.2|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr20_+_19738300_19738352	0.0374507	SOX3_SOX2	ENST00000432334.1|RP1-122P22.2|ENSG00000233895.1|RP1-122P22.2
hg19_v2_chr10_+_127371798_127371862	0.0372741	SOX3_SOX2	ENST00000596068.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000607914.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000415305.2|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3	ENST00000449693.1|RP11-383C5.3|ENSG00000228021.3|RP11-383C5.3
hg19_v2_chrX_+_21958814_21958864	0.0358551	SOX3_SOX2	ENST00000379404.1|SMS|ENSG00000102172.11|spermine synthase 	ENST00000415881.2|SMS|ENSG00000102172.11|spermine synthase
hg19_v2_chr3_-_57583052_57583079	0.0355629	SOX3_SOX2	ENST00000496292.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4 	ENST00000489843.1|ARF4|ENSG00000168374.6|ADP-ribosylation factor 4
hg19_v2_chr3_-_11685345_11685432	0.035494	SOX3_SOX2	ENST00000430365.2|VGLL4|ENSG00000144560.9|vestigial like 4 (Drosophila)
hg19_v2_chr1_+_158449668_158449668	0.0353154	SOX3_SOX2	ENST00000368152.1|OR10R2|ENSG00000198965.3|olfactory receptor, family 10, subfamily R, member 2
hg19_v2_chr17_-_18585541_18585572	0.0352027	SOX3_SOX2	ENST00000285274.5|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000545289.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B 	ENST00000580145.1|ZNF286B|ENSG00000249459.4|zinc finger protein 286B
hg19_v2_chr7_-_44229022_44229055	0.0350512	SOX3_SOX2	ENST00000403799.3|GCK|ENSG00000106633.11|glucokinase (hexokinase 4)
hg19_v2_chr17_-_49337392_49337465	0.0347188	SOX3_SOX2	ENST00000376381.2|MBTD1|ENSG00000011258.11|mbt domain containing 1 	ENST00000586178.1|MBTD1|ENSG00000011258.11|mbt domain containing 1
hg19_v2_chr8_+_62200509_62200590	0.0344392	SOX3_SOX2	ENST00000519846.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000518592.1|CLVS1|ENSG00000177182.6|clavesin 1 	ENST00000325897.4|CLVS1|ENSG00000177182.6|clavesin 1
hg19_v2_chr11_+_63754294_63754323	0.034428	SOX3_SOX2	ENST00000543988.1|OTUB1|ENSG00000167770.7|OTU domain, ubiquitin aldehyde binding 1
hg19_v2_chr1_-_150602035_150602095	0.0342322	SOX3_SOX2	ENST00000503241.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369016.4|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000339643.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000271690.8|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000356527.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000362052.7|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000503345.1|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369014.5|ENSA|ENSG00000143420.13|endosulfine alpha 	ENST00000369009.3|ENSA|ENSG00000143420.13|endosulfine alpha
hg19_v2_chr13_-_31040060_31040102	0.033693	SOX3_SOX2	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chrY_+_26997726_26997726	0.0334573	SOX3_SOX2	ENST00000382296.2|DAZ4|ENSG00000205916.6|deleted in azoospermia 4
hg19_v2_chr6_-_108582168_108582256	0.0333748	SOX3_SOX2	ENST00000426155.2|SNX3|ENSG00000112335.10|sorting nexin 3
hg19_v2_chr7_-_140178726_140178774	0.0322795	SOX3_SOX2	ENST00000480552.1|MKRN1|ENSG00000133606.6|makorin ring finger protein 1
hg19_v2_chr12_-_122712038_122712081	0.0312668	SOX3_SOX2	ENST00000413918.1|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein 	ENST00000443649.3|DIABLO|ENSG00000184047.11|diablo, IAP-binding mitochondrial protein
hg19_v2_chr11_+_34643600_34643750	0.0299511	SOX3_SOX2	ENST00000530286.1|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000533754.1|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr15_-_60771128_60771277	0.0298838	SOX3_SOX2	ENST00000558512.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2 	ENST00000561114.1|NARG2|ENSG00000128915.7|NMDA receptor regulated 2
hg19_v2_chr1_-_211666259_211666259	0.0293886	SOX3_SOX2	ENST00000367002.4|RD3|ENSG00000198570.5|retinal degeneration 3
hg19_v2_chr1_+_202789394_202789394	0.0291867	SOX3_SOX2	ENST00000330493.5|RP11-480I12.4|ENSG00000184774.6|Putative inactive alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515
hg19_v2_chr18_+_59415396_59415427	0.0289028	SOX3_SOX2	ENST00000567801.1|RP11-1096D5.1|ENSG00000260440.1|RP11-1096D5.1
hg19_v2_chr3_-_87040233_87040257	0.0287382	SOX3_SOX2	ENST00000398399.2|VGLL3|ENSG00000206538.3|vestigial like 3 (Drosophila)
hg19_v2_chr17_+_4046462_4046550	0.0277424	SOX3_SOX2	ENST00000577075.2|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000575251.1|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2 	ENST00000301391.3|CYB5D2|ENSG00000167740.5|cytochrome b5 domain containing 2
hg19_v2_chr12_-_24715307_24715319	0.0275435	SOX3_SOX2	ENST00000538905.1|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1
hg19_v2_chr7_+_16828866_16828866	0.0273993	SOX3_SOX2	ENST00000597084.1|AC073333.1|ENSG00000267906.1|Uncharacterized protein
hg19_v2_chr1_-_151119087_151119114	0.027354	SOX3_SOX2	ENST00000341697.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C 	ENST00000368914.3|SEMA6C|ENSG00000143434.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
hg19_v2_chr6_-_31619742_31619778	0.0272383	SOX3_SOX2	ENST00000433828.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6 	ENST00000456286.1|BAG6|ENSG00000204463.8|BCL2-associated athanogene 6
hg19_v2_chr2_+_30370382_30370421	0.0269255	SOX3_SOX2	ENST00000402708.1|YPEL5|ENSG00000119801.8|yippee-like 5 (Drosophila)
hg19_v2_chr5_+_121647924_121647940	0.0266182	SOX3_SOX2	ENST00000414317.2|SNCAIP|ENSG00000064692.14|synuclein, alpha interacting protein
hg19_v2_chr2_-_178128149_178128198	0.0261686	SOX3_SOX2	ENST00000423513.1|NFE2L2|ENSG00000116044.11|nuclear factor, erythroid 2-like 2
hg19_v2_chr5_-_118324200_118324254	0.0258326	SOX3_SOX2	ENST00000515439.3|DTWD2|ENSG00000169570.5|DTW domain containing 2 	ENST00000510708.1|DTWD2|ENSG00000169570.5|DTW domain containing 2
hg19_v2_chr19_-_46706186_46706343	0.0256648	SOX3_SOX2	ENST00000601263.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598754.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000594027.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000598518.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000599817.1|AC006262.5|ENSG00000268621.1|AC006262.5	ENST00000595673.1|AC006262.5|ENSG00000268621.1|AC006262.5
hg19_v2_chr1_+_16085244_16085255	0.0255145	SOX3_SOX2	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr2_+_65283529_65283599	0.0254802	SOX3_SOX2	ENST00000546106.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000537589.1|CEP68|ENSG00000011523.9|centrosomal protein 68kDa 	ENST00000260569.4|CEP68|ENSG00000011523.9|centrosomal protein 68kDa
hg19_v2_chr3_+_130613001_130613078	0.025447	SOX3_SOX2	ENST00000504948.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000513801.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1 	ENST00000505072.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr10_-_70231639_70231879	0.0245291	SOX3_SOX2	ENST00000551118.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000358410.3|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399180.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2 	ENST00000399179.2|DNA2|ENSG00000138346.10|DNA replication helicase/nuclease 2
hg19_v2_chr3_+_107244229_107244254	0.024303	SOX3_SOX2	ENST00000456419.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402163.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr9_-_130712995_130713006	0.0239373	SOX3_SOX2	ENST00000373084.4|FAM102A|ENSG00000167106.7|family with sequence similarity 102, member A
hg19_v2_chr11_+_125496124_125496344	0.0235449	SOX3_SOX2	ENST00000533778.2|CHEK1|ENSG00000149554.8|checkpoint kinase 1 	ENST00000534070.1|CHEK1|ENSG00000149554.8|checkpoint kinase 1
hg19_v2_chr8_+_107738240_107738340	0.0232255	SOX3_SOX2	ENST00000449762.2|OXR1|ENSG00000164830.13|oxidation resistance 1 	ENST00000297447.6|OXR1|ENSG00000164830.13|oxidation resistance 1
hg19_v2_chr9_+_18474098_18474160	0.0228741	SOX3_SOX2	ENST00000327883.7|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1 	ENST00000431052.2|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1 	ENST00000380570.4|ADAMTSL1|ENSG00000178031.11|ADAMTS-like 1
hg19_v2_chrX_+_47342970_47342970	0.0221463	SOX3_SOX2	ENST00000357412.1|CXorf24|ENSG00000196741.3|chromosome X open reading frame 24
hg19_v2_chr9_-_36400857_36400902	0.0221332	SOX3_SOX2	ENST00000377877.4|RNF38|ENSG00000137075.13|ring finger protein 38
hg19_v2_chr17_+_21729593_21729605	0.0218118	SOX3_SOX2	ENST00000581769.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4 	ENST00000584755.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr2_-_25451065_25451090	0.0217782	SOX3_SOX2	ENST00000606328.1|RP11-458N5.1|ENSG00000272048.1|RP11-458N5.1
hg19_v2_chr8_-_6783588_6783605	0.0209595	SOX3_SOX2	ENST00000297436.2|DEFA6|ENSG00000164822.4|defensin, alpha 6, Paneth cell-specific
hg19_v2_chr12_+_1099675_1099751	0.0203746	SOX3_SOX2	ENST00000545318.2|ERC1|ENSG00000082805.15|ELKS/RAB6-interacting/CAST family member 1
hg19_v2_chrX_-_46404811_46404876	0.0192808	SOX3_SOX2	ENST00000518708.1|ZNF674|ENSG00000251192.3|zinc finger protein 674 	ENST00000523374.1|ZNF674|ENSG00000251192.3|zinc finger protein 674
hg19_v2_chr4_-_170192000_170192115	0.018857	SOX3_SOX2	ENST00000502315.1|SH3RF1|ENSG00000154447.10|SH3 domain containing ring finger 1
hg19_v2_chr2_-_27579623_27579648	0.0175529	SOX3_SOX2	ENST00000457748.1|GTF3C2|ENSG00000115207.9|general transcription factor IIIC, polypeptide 2, beta 110kDa
hg19_v2_chr2_+_177025619_177025619	0.017399	SOX3_SOX2	ENST00000410016.1|HOXD3|ENSG00000128652.7|homeobox D3
hg19_v2_chr2_+_203241531_203241659	0.0159902	SOX3_SOX2	ENST00000374580.4|BMPR2|ENSG00000204217.8|bone morphogenetic protein receptor, type II (serine/threonine kinase)
hg19_v2_chr4_+_699610_699732	0.015692	SOX3_SOX2	ENST00000521023.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr6_+_56911476_56911524	0.0154891	SOX3_SOX2	ENST00000545356.1|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr12_+_40787194_40787197	0.0153329	SOX3_SOX2	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr10_+_123872483_123872573	0.0151997	SOX3_SOX2	ENST00000369001.1|TACC2|ENSG00000138162.13|transforming, acidic coiled-coil containing protein 2
hg19_v2_chr2_+_208394658_208394692	0.0150718	SOX3_SOX2	ENST00000421139.1|CREB1|ENSG00000118260.10|cAMP responsive element binding protein 1
hg19_v2_chr11_+_60997055_60997055	0.0149234	SOX3_SOX2	ENST00000544899.1|PGA4|ENSG00000229183.4|pepsinogen 4, group I (pepsinogen A)
hg19_v2_chr1_+_100818009_100818072	0.0147179	SOX3_SOX2	ENST00000370125.2|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000361544.6|CDC14A|ENSG00000079335.13|cell division cycle 14A 	ENST00000370124.3|CDC14A|ENSG00000079335.13|cell division cycle 14A
hg19_v2_chr20_-_1317555_1317555	0.0138365	SOX3_SOX2	ENST00000537552.1|AL136531.1|ENSG00000203630.3|HCG2043693; Uncharacterized protein
hg19_v2_chr15_-_70994612_70994652	0.0135784	SOX3_SOX2	ENST00000558758.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000379983.2|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats 	ENST00000560441.1|UACA|ENSG00000137831.10|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg19_v2_chr12_-_56615485_56615685	0.0133209	SOX3_SOX2	ENST00000549038.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552244.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr10_+_71562180_71562291	0.0124284	SOX3_SOX2	ENST00000517713.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000522165.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1 	ENST00000520133.1|COL13A1|ENSG00000197467.9|collagen, type XIII, alpha 1
hg19_v2_chr14_+_39644425_39644470	0.0109788	SOX3_SOX2	ENST00000556530.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr18_+_7946839_7946903	0.0105399	SOX3_SOX2	ENST00000578916.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr19_+_11071652_11071682	0.010358	SOX3_SOX2	ENST00000344626.4|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENST00000429416.3|SMARCA4|ENSG00000127616.13|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
hg19_v2_chr19_-_37019136_37019178	0.0101582	SOX3_SOX2	ENST00000592282.1|ZNF260|ENSG00000254004.2|zinc finger protein 260
hg19_v2_chr12_-_133707021_133707071	0.00978722	SOX3_SOX2	ENST00000537226.1|ZNF891|ENSG00000214029.3|zinc finger protein 891
hg19_v2_chr20_-_21082105_21082200	0.0093992	SOX3_SOX2	ENST00000455890.2|LINC00237|ENSG00000225127.2|long intergenic non-protein coding RNA 237
hg19_v2_chr1_-_204463829_204463857	0.00929209	SOX3_SOX2	ENST00000429009.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta 	ENST00000415899.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr15_+_79166065_79166163	0.00781762	SOX3_SOX2	ENST00000559690.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1 	ENST00000559158.1|MORF4L1|ENSG00000185787.10|mortality factor 4 like 1
hg19_v2_chrX_-_73513307_73513350	0.00768085	SOX3_SOX2	ENST00000602420.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr5_-_173043591_173043688	0.00754852	SOX3_SOX2	ENST00000285908.5|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000480951.1|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1 	ENST00000311086.4|BOD1|ENSG00000145919.6|biorientation of chromosomes in cell division 1
hg19_v2_chr9_-_132586378_132586433	0.00583467	SOX3_SOX2	ENST00000351698.4|TOR1A|ENSG00000136827.11|torsin family 1, member A (torsin A)
hg19_v2_chr1_+_64239657_64239724	0.00520697	SOX3_SOX2	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr12_-_56615693_56615758	0.00500081	SOX3_SOX2	ENST00000394013.2|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000345093.4|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000551711.1|RNF41|ENSG00000181852.13|ring finger protein 41 	ENST00000552656.1|RNF41|ENSG00000181852.13|ring finger protein 41
hg19_v2_chr3_+_23847432_23847512	0.00468748	SOX3_SOX2	ENST00000346855.3|UBE2E1|ENSG00000170142.7|ubiquitin-conjugating enzyme E2E 1
hg19_v2_chr2_+_66662510_66662532	0.00407131	SOX3_SOX2	ENST00000272369.9|MEIS1|ENSG00000143995.15|Meis homeobox 1 	ENST00000407092.2|MEIS1|ENSG00000143995.15|Meis homeobox 1
hg19_v2_chr8_-_12175825_12175825	0.00337802	SOX3_SOX2	ENST00000400079.1|DEFB130|ENSG00000232948.1|defensin, beta 130
hg19_v2_chr12_-_96793844_96793855	0.00333461	SOX3_SOX2	ENST00000542666.1|CDK17|ENSG00000059758.3|cyclin-dependent kinase 17
hg19_v2_chr12_+_58120044_58120095	0.00314192	SOX3_SOX2	ENST00000542466.2|AGAP2-AS1|ENSG00000255737.2|AGAP2 antisense RNA 1
hg19_v2_chr12_-_9360966_9360996	0.00309909	SOX3_SOX2	ENST00000261336.2|PZP|ENSG00000126838.5|pregnancy-zone protein
hg19_v2_chr8_-_82644562_82644654	0.00286924	SOX3_SOX2	ENST00000520604.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000521742.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1 	ENST00000520635.1|ZFAND1|ENSG00000104231.6|zinc finger, AN1-type domain 1
hg19_v2_chr3_+_137490748_137490791	0.00227957	SOX3_SOX2	ENST00000478772.1|RP11-2A4.3|ENSG00000239513.1|RP11-2A4.3
hg19_v2_chr15_+_86685227_86685227	0.00177174	SOX3_SOX2	ENST00000441037.2|AGBL1|ENSG00000166748.8|ATP/GTP binding protein-like 1
hg19_v2_chr4_+_25915896_25915931	0.000613809	SOX3_SOX2	ENST00000514384.1|SMIM20|ENSG00000250317.4|small integral membrane protein 20
hg19_v2_chrX_+_107288280_107288317	0.000347095	SOX3_SOX2	ENST00000458383.1|VSIG1|ENSG00000101842.9|V-set and immunoglobulin domain containing 1
