hg19_v2_chr1_-_119530428_119530572	2.55855	SOX9	ENST00000369429.3|TBX15|ENSG00000092607.9|T-box 15
hg19_v2_chr4_-_186732048_186732225	2.37044	SOX9	ENST00000448662.2|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439049.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000420158.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000431808.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000319471.9|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr8_+_144295067_144295131	2.3238	SOX9	ENST00000330824.2|GPIHBP1|ENSG00000182851.2|glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
hg19_v2_chr6_-_139613269_139613280	2.24654	SOX9	ENST00000358430.3|TXLNB|ENSG00000164440.10|taxilin beta
hg19_v2_chr3_-_46904946_46904973	2.20746	SOX9	ENST00000292327.4|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr8_+_19759228_19759228	2.15708	SOX9	ENST00000520959.1|LPL|ENSG00000175445.10|lipoprotein lipase
hg19_v2_chr3_-_46904918_46904940	2.14089	SOX9	ENST00000395869.1|MYL3|ENSG00000160808.5|myosin, light chain 3, alkali; ventricular, skeletal, slow
hg19_v2_chr12_-_6233828_6233843	2.0276	SOX9	ENST00000572068.1|VWF|ENSG00000110799.9|von Willebrand factor 	ENST00000261405.5|VWF|ENSG00000110799.9|von Willebrand factor
hg19_v2_chr19_-_17375527_17375538	1.88796	SOX9	ENST00000431146.2|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1 	ENST00000594190.1|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr8_-_82395461_82395498	1.88283	SOX9	ENST00000256104.4|FABP4|ENSG00000170323.4|fatty acid binding protein 4, adipocyte
hg19_v2_chr12_-_8815215_8815298	1.87738	SOX9	ENST00000544889.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5 	ENST00000543369.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chrX_-_45060135_45060149	1.835	SOX9	ENST00000398000.2|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36 	ENST00000377934.4|CXorf36|ENSG00000147113.12|chromosome X open reading frame 36
hg19_v2_chr13_+_110958124_110958159	1.7507	SOX9	ENST00000400163.2|COL4A2|ENSG00000134871.13|collagen, type IV, alpha 2
hg19_v2_chr14_-_38725573_38725605	1.72623	SOX9	ENST00000342213.2|CLEC14A|ENSG00000176435.6|C-type lectin domain family 14, member A
hg19_v2_chr10_-_97321112_97321163	1.60263	SOX9	ENST00000607232.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371227.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371249.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371247.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000371246.2|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000393949.1|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000353505.5|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1 	ENST00000347291.4|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr11_+_131781290_131781362	1.59364	SOX9	ENST00000425719.2|NTM|ENSG00000182667.10|neurotrimin 	ENST00000374784.1|NTM|ENSG00000182667.10|neurotrimin
hg19_v2_chr10_-_97321165_97321176	1.58471	SOX9	ENST00000306402.6|SORBS1|ENSG00000095637.16|sorbin and SH3 domain containing 1
hg19_v2_chr12_-_8815299_8815331	1.58055	SOX9	ENST00000535336.1|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr17_-_39743139_39743173	1.55378	SOX9	ENST00000167586.6|KRT14|ENSG00000186847.5|keratin 14
hg19_v2_chr1_+_156589051_156589089	1.52701	SOX9	ENST00000255039.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr5_+_140593509_140593509	1.51192	SOX9	ENST00000341948.4|PCDHB13|ENSG00000187372.9|protocadherin beta 13
hg19_v2_chr18_+_7946839_7946903	1.5084	SOX9	ENST00000578916.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr18_+_7946941_7946952	1.49296	SOX9	ENST00000444013.1|PTPRM|ENSG00000173482.12|protein tyrosine phosphatase, receptor type, M
hg19_v2_chr3_-_112329110_112329127	1.48043	SOX9	ENST00000479368.1|CCDC80|ENSG00000091986.11|coiled-coil domain containing 80
hg19_v2_chr16_+_82660560_82660585	1.47522	SOX9	ENST00000268613.10|CDH13|ENSG00000140945.11|cadherin 13 	ENST00000565636.1|CDH13|ENSG00000140945.11|cadherin 13 	ENST00000431540.3|CDH13|ENSG00000140945.11|cadherin 13 	ENST00000428848.3|CDH13|ENSG00000140945.11|cadherin 13
hg19_v2_chr10_+_24497704_24497743	1.38903	SOX9	ENST00000376456.4|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000458595.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr5_+_148521454_148521610	1.38301	SOX9	ENST00000508983.1|ABLIM3|ENSG00000173210.15|actin binding LIM protein family, member 3
hg19_v2_chr12_-_18243119_18243133	1.37614	SOX9	ENST00000538724.1|RERGL|ENSG00000111404.2|RERG/RAS-like 	ENST00000229002.2|RERGL|ENSG00000111404.2|RERG/RAS-like
hg19_v2_chr6_-_75915757_75915775	1.37244	SOX9	ENST00000322507.8|COL12A1|ENSG00000111799.16|collagen, type XII, alpha 1
hg19_v2_chr4_+_41614909_41614926	1.3528	SOX9	ENST00000509454.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000396595.3|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1 	ENST00000381753.4|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr12_+_53443680_53443858	1.31935	SOX9	ENST00000314250.6|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000451358.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr3_-_149051194_149051269	1.30106	SOX9	ENST00000470080.1|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr17_+_8213590_8213603	1.27088	SOX9	ENST00000361926.3|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chr10_+_24498060_24498102	1.26207	SOX9	ENST00000376454.3|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376452.3|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr5_-_146833485_146833522	1.25031	SOX9	ENST00000398514.3|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr12_+_53443963_53443970	1.23938	SOX9	ENST00000546602.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000552570.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2) 	ENST00000549700.1|TENC1|ENSG00000111077.13|tensin like C1 domain containing phosphatase (tensin 2)
hg19_v2_chr3_-_185826855_185826911	1.23295	SOX9	ENST00000306376.5|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr17_+_1666108_1666123	1.23106	SOX9	ENST00000570731.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr3_-_100565249_100565274	1.21688	SOX9	ENST00000495591.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000383691.4|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein 	ENST00000466947.1|ABI3BP|ENSG00000154175.12|ABI family, member 3 (NESH) binding protein
hg19_v2_chr10_+_24528108_24528128	1.19026	SOX9	ENST00000438429.1|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr10_+_102106829_102106881	1.15968	SOX9	ENST00000370355.2|SCD|ENSG00000099194.5|stearoyl-CoA desaturase (delta-9-desaturase)
hg19_v2_chr12_-_8815477_8815490	1.15743	SOX9	ENST00000433590.2|MFAP5|ENSG00000197614.6|microfibrillar associated protein 5
hg19_v2_chr7_-_131241361_131241398	1.14198	SOX9	ENST00000378555.3|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000322985.9|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000541194.1|PODXL|ENSG00000128567.12|podocalyxin-like 	ENST00000537928.1|PODXL|ENSG00000128567.12|podocalyxin-like
hg19_v2_chr4_+_41614720_41614734	1.14073	SOX9	ENST00000509277.1|LIMCH1|ENSG00000064042.13|LIM and calponin homology domains 1
hg19_v2_chr5_-_146833803_146833829	1.12712	SOX9	ENST00000512722.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr3_-_149051444_149051548	1.12611	SOX9	ENST00000296059.2|TM4SF18|ENSG00000163762.2|transmembrane 4 L six family member 18
hg19_v2_chr19_-_17375541_17375605	1.11987	SOX9	ENST00000252597.3|USHBP1|ENSG00000130307.7|Usher syndrome 1C binding protein 1
hg19_v2_chr1_-_79472365_79472443	1.1191	SOX9	ENST00000370742.3|ELTD1|ENSG00000162618.8|EGF, latrophilin and seven transmembrane domain containing 1
hg19_v2_chr6_+_53976235_53976254	1.09239	SOX9	ENST00000502396.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein 	ENST00000358276.5|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr1_+_185703513_185703683	1.0845	SOX9	ENST00000271588.4|HMCN1|ENSG00000143341.7|hemicentin 1 	ENST00000367492.2|HMCN1|ENSG00000143341.7|hemicentin 1
hg19_v2_chr9_-_124989804_124989865	1.07899	SOX9	ENST00000373755.2|LHX6|ENSG00000106852.11|LIM homeobox 6 	ENST00000373754.2|LHX6|ENSG00000106852.11|LIM homeobox 6
hg19_v2_chr22_-_19512893_19512946	1.05514	SOX9	ENST00000403084.1|CLDN5|ENSG00000184113.8|claudin 5 	ENST00000413119.2|CLDN5|ENSG00000184113.8|claudin 5
hg19_v2_chr10_+_6244829_6244904	1.04552	SOX9	ENST00000317350.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379785.1|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379782.3|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000360521.2|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENST00000379775.4|PFKFB3|ENSG00000170525.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
hg19_v2_chrX_-_38080077_38080177	1.03944	SOX9	ENST00000378533.3|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000544439.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000432886.2|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked 	ENST00000538295.1|SRPX|ENSG00000101955.10|sushi-repeat containing protein, X-linked
hg19_v2_chr17_-_73505961_73505976	1.0386	SOX9	ENST00000433559.2|CASKIN2|ENSG00000177303.5|CASK interacting protein 2
hg19_v2_chr5_+_140602904_140603078	1.03785	SOX9	ENST00000515856.2|PCDHB14|ENSG00000120327.4|protocadherin beta 14 	ENST00000239449.4|PCDHB14|ENSG00000120327.4|protocadherin beta 14
hg19_v2_chr6_+_53976211_53976222	1.02304	SOX9	ENST00000503951.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr9_+_27109392_27109435	1.02046	SOX9	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr2_-_151344172_151344243	1.01829	SOX9	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr9_+_27109440_27109456	1.01796	SOX9	ENST00000519080.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr6_+_148663729_148663847	1.00653	SOX9	ENST00000367467.3|SASH1|ENSG00000111961.12|SAM and SH3 domain containing 1
hg19_v2_chr12_-_71003568_71003629	1.0018	SOX9	ENST00000547715.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000451516.2|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000538708.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000550857.1|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B 	ENST00000261266.5|PTPRB|ENSG00000127329.10|protein tyrosine phosphatase, receptor type, B
hg19_v2_chr9_+_124461603_124461649	1.00058	SOX9	ENST00000373782.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chr3_-_65583561_65583610	0.99755	SOX9	ENST00000460329.2|MAGI1|ENSG00000151276.19|membrane associated guanylate kinase, WW and PDZ domain containing 1
hg19_v2_chr5_+_15500280_15500312	0.994637	SOX9	ENST00000504595.1|FBXL7|ENSG00000183580.8|F-box and leucine-rich repeat protein 7
hg19_v2_chr2_-_158182410_158182446	0.987972	SOX9	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr9_+_27109133_27109187	0.962711	SOX9	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr17_+_8213539_8213566	0.958971	SOX9	ENST00000583529.1|ARHGEF15|ENSG00000198844.6|Rho guanine nucleotide exchange factor (GEF) 15
hg19_v2_chrX_+_114874727_114874755	0.957742	SOX9	ENST00000543070.1|PLS3|ENSG00000102024.13|plastin 3
hg19_v2_chr9_+_2622085_2622174	0.957527	SOX9	ENST00000382099.2|VLDLR|ENSG00000147852.11|very low density lipoprotein receptor
hg19_v2_chr12_-_111358372_111358389	0.940538	SOX9	ENST00000548438.1|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow 	ENST00000228841.8|MYL2|ENSG00000111245.10|myosin, light chain 2, regulatory, cardiac, slow
hg19_v2_chr16_+_82660635_82660698	0.938909	SOX9	ENST00000567445.1|CDH13|ENSG00000140945.11|cadherin 13 	ENST00000446376.2|CDH13|ENSG00000140945.11|cadherin 13
hg19_v2_chr13_+_113656092_113656207	0.934976	SOX9	ENST00000397024.1|MCF2L|ENSG00000126217.16|MCF.2 cell line derived transforming sequence-like
hg19_v2_chr1_-_27339317_27339375	0.925616	SOX9	ENST00000289166.5|FAM46B|ENSG00000158246.7|family with sequence similarity 46, member B
hg19_v2_chr15_+_71184931_71184974	0.920803	SOX9	ENST00000560369.1|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49 	ENST00000260382.5|LRRC49|ENSG00000137821.7|leucine rich repeat containing 49
hg19_v2_chr16_+_66400533_66400545	0.916331	SOX9	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr19_-_8408139_8408153	0.915439	SOX9	ENST00000330915.3|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000593649.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3 	ENST00000595639.1|KANK3|ENSG00000186994.7|KN motif and ankyrin repeat domains 3
hg19_v2_chr8_-_38326139_38326161	0.915044	SOX9	ENST00000335922.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000532791.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397091.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr3_+_85008089_85008189	0.900049	SOX9	ENST00000383699.3|CADM2|ENSG00000175161.9|cell adhesion molecule 2
hg19_v2_chr6_-_46293378_46293415	0.890782	SOX9	ENST00000330430.6|RCAN2|ENSG00000172348.10|regulator of calcineurin 2
hg19_v2_chr5_-_158526693_158526706	0.888365	SOX9	ENST00000380654.4|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr5_-_146833222_146833261	0.883937	SOX9	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr4_-_182186182_182186217	0.882473	SOX9	ENST00000512547.1|RP11-665C14.2|ENSG00000249460.1|RP11-665C14.2
hg19_v2_chr17_-_56605341_56605363	0.88121	SOX9	ENST00000583114.1|SEPT4|ENSG00000108387.10|septin 4
hg19_v2_chr11_+_60691924_60691966	0.88093	SOX9	ENST00000544065.1|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000453848.2|TMEM132A|ENSG00000006118.10|transmembrane protein 132A 	ENST00000005286.4|TMEM132A|ENSG00000006118.10|transmembrane protein 132A
hg19_v2_chr7_+_107110488_107110515	0.864264	SOX9	ENST00000304402.4|GPR22|ENSG00000172209.4|G protein-coupled receptor 22
hg19_v2_chr1_+_43766642_43766667	0.863101	SOX9	ENST00000372476.3|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr5_-_141338627_141338627	0.854247	SOX9	ENST00000231484.3|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr20_+_61147651_61147666	0.854151	SOX9	ENST00000370527.3|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166 	ENST00000370524.2|C20orf166|ENSG00000174407.7|chromosome 20 open reading frame 166
hg19_v2_chr6_+_53976285_53976308	0.85408	SOX9	ENST00000514433.1|MLIP|ENSG00000146147.10|muscular LMNA-interacting protein
hg19_v2_chr7_-_107968921_107968937	0.838535	SOX9	ENST00000442580.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr10_-_105845674_105845760	0.834182	SOX9	ENST00000353479.5|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1 	ENST00000369733.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr12_-_88974236_88974256	0.823315	SOX9	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr5_-_83680192_83680209	0.817785	SOX9	ENST00000380138.3|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr8_-_38326119_38326134	0.811742	SOX9	ENST00000356207.5|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000326324.6|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr5_-_158526756_158526797	0.809149	SOX9	ENST00000313708.6|EBF1|ENSG00000164330.12|early B-cell factor 1 	ENST00000517373.1|EBF1|ENSG00000164330.12|early B-cell factor 1
hg19_v2_chr1_+_43766668_43766743	0.801378	SOX9	ENST00000441333.2|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1 	ENST00000538015.1|TIE1|ENSG00000066056.9|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
hg19_v2_chr17_-_14683517_14683523	0.796479	SOX9	ENST00000379640.1|AC005863.1|ENSG00000205325.1|AC005863.1
hg19_v2_chr7_-_27219849_27219880	0.796343	SOX9	ENST00000396344.4|HOXA10|ENSG00000253293.3|homeobox A10
hg19_v2_chr4_-_186732241_186732263	0.796026	SOX9	ENST00000421639.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr2_-_55277436_55277464	0.783935	SOX9	ENST00000354474.6|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr5_-_83680603_83680617	0.782619	SOX9	ENST00000296591.5|EDIL3|ENSG00000164176.8|EGF-like repeats and discoidin I-like domains 3
hg19_v2_chr2_-_1748214_1748295	0.780339	SOX9	ENST00000433670.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000425171.1|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila) 	ENST00000252804.4|PXDN|ENSG00000130508.6|peroxidasin homolog (Drosophila)
hg19_v2_chr4_-_186732892_186732916	0.778001	SOX9	ENST00000451958.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000439914.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000428330.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2 	ENST00000429056.1|SORBS2|ENSG00000154556.13|sorbin and SH3 domain containing 2
hg19_v2_chr5_+_140557371_140557371	0.774872	SOX9	ENST00000239444.2|PCDHB8|ENSG00000120322.2|protocadherin beta 8
hg19_v2_chr1_-_217311090_217311097	0.773283	SOX9	ENST00000493603.1|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma 	ENST00000366940.2|ESRRG|ENSG00000196482.12|estrogen-related receptor gamma
hg19_v2_chr3_+_89156674_89156797	0.768489	SOX9	ENST00000336596.2|EPHA3|ENSG00000044524.6|EPH receptor A3
hg19_v2_chr1_+_156589198_156589234	0.767903	SOX9	ENST00000456112.1|HAPLN2|ENSG00000132702.8|hyaluronan and proteoglycan link protein 2
hg19_v2_chr14_+_63671105_63671126	0.746302	SOX9	ENST00000316754.3|RHOJ|ENSG00000126785.8|ras homolog family member J
hg19_v2_chr7_-_11871815_11871831	0.744828	SOX9	ENST00000423059.4|THSD7A|ENSG00000005108.11|thrombospondin, type I, domain containing 7A
hg19_v2_chr9_+_112403059_112403079	0.731846	SOX9	ENST00000374531.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr2_-_55277692_55277734	0.722051	SOX9	ENST00000394611.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr9_-_140196703_140196744	0.714444	SOX9	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr17_+_16945820_16945859	0.714179	SOX9	ENST00000577514.1|MPRIP|ENSG00000133030.15|myosin phosphatase Rho interacting protein
hg19_v2_chr4_-_110723335_110723356	0.697353	SOX9	ENST00000394634.2|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr16_+_2083265_2083303	0.692625	SOX9	ENST00000565855.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 	ENST00000566198.1|SLC9A3R2|ENSG00000065054.9|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2
hg19_v2_chr2_-_55277654_55277685	0.690229	SOX9	ENST00000337526.6|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000317610.7|RTN4|ENSG00000115310.13|reticulon 4 	ENST00000357732.4|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr2_-_55277512_55277533	0.689867	SOX9	ENST00000402434.2|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr2_-_158182322_158182358	0.688847	SOX9	ENST00000420719.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000409216.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr1_-_85930246_85930289	0.687913	SOX9	ENST00000426972.3|DDAH1|ENSG00000153904.14|dimethylarginine dimethylaminohydrolase 1
hg19_v2_chr19_+_45971246_45971265	0.686971	SOX9	ENST00000585836.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000417353.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000353609.3|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000591858.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000443841.2|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000590335.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr12_+_95611536_95611543	0.68617	SOX9	ENST00000549002.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr4_-_110723194_110723207	0.682951	SOX9	ENST00000394635.3|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr2_+_30569506_30569525	0.6807	SOX9	ENST00000421976.2|AC109642.1|ENSG00000235997.2|AC109642.1
hg19_v2_chr5_+_140739537_140739703	0.674176	SOX9	ENST00000522605.1|PCDHGB2|ENSG00000253910.1|protocadherin gamma subfamily B, 2
hg19_v2_chr12_-_24715478_24715532	0.67416	SOX9	ENST00000456299.2|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1	ENST00000540811.1|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1
hg19_v2_chr3_-_185826718_185826803	0.667895	SOX9	ENST00000413301.1|ETV5|ENSG00000244405.3|ets variant 5 	ENST00000421809.1|ETV5|ENSG00000244405.3|ets variant 5
hg19_v2_chr5_+_172068232_172068320	0.664805	SOX9	ENST00000520919.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000522853.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000369800.5|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B
hg19_v2_chr17_+_36584662_36584730	0.66473	SOX9	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr11_-_65640071_65640125	0.65744	SOX9	ENST00000526624.1|EFEMP2|ENSG00000172638.8|EGF containing fibulin-like extracellular matrix protein 2
hg19_v2_chr2_-_175869936_175869954	0.652315	SOX9	ENST00000409900.3|CHN1|ENSG00000128656.9|chimerin 1
hg19_v2_chr8_+_70378852_70378866	0.650685	SOX9	ENST00000525061.1|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000458141.2|SULF1|ENSG00000137573.9|sulfatase 1 	ENST00000260128.4|SULF1|ENSG00000137573.9|sulfatase 1
hg19_v2_chr5_+_140729649_140729828	0.648251	SOX9	ENST00000523390.1|PCDHGB1|ENSG00000254221.1|protocadherin gamma subfamily B, 1
hg19_v2_chr10_-_61122934_61122940	0.647125	SOX9	ENST00000512919.1|FAM13C|ENSG00000148541.8|family with sequence similarity 13, member C
hg19_v2_chr10_+_73724123_73724206	0.646929	SOX9	ENST00000373115.4|CHST3|ENSG00000122863.5|carbohydrate (chondroitin 6) sulfotransferase 3
hg19_v2_chr11_+_77532233_77532244	0.646386	SOX9	ENST00000525409.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing
hg19_v2_chr7_-_22233442_22233527	0.643256	SOX9	ENST00000401957.2|RAPGEF5|ENSG00000136237.14|Rap guanine nucleotide exchange factor (GEF) 5
hg19_v2_chr2_+_220309379_220309413	0.639165	SOX9	ENST00000451076.1|SPEG|ENSG00000072195.10|SPEG complex locus
hg19_v2_chr8_-_93115445_93115462	0.638412	SOX9	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr5_+_140797296_140797427	0.634182	SOX9	ENST00000398594.2|PCDHGB7|ENSG00000254122.1|protocadherin gamma subfamily B, 7
hg19_v2_chr9_+_112852477_112852514	0.633538	SOX9	ENST00000480388.1|AKAP2|ENSG00000241978.5|A kinase (PRKA) anchor protein 2
hg19_v2_chr14_-_95236551_95236576	0.631957	SOX9	ENST00000238558.3|GSC|ENSG00000133937.3|goosecoid homeobox
hg19_v2_chr1_+_164528866_164528877	0.631253	SOX9	ENST00000420696.2|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr6_+_13272904_13272989	0.630953	SOX9	ENST00000379335.3|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1 	ENST00000379329.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chr19_+_36359341_36359352	0.622076	SOX9	ENST00000221891.4|APLP1|ENSG00000105290.7|amyloid beta (A4) precursor-like protein 1
hg19_v2_chr8_-_42358742_42358787	0.621512	SOX9	ENST00000517366.1|SLC20A2|ENSG00000168575.5|solute carrier family 20 (phosphate transporter), member 2
hg19_v2_chr5_-_146889619_146889639	0.620027	SOX9	ENST00000343218.5|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr22_+_38864041_38864150	0.617911	SOX9	ENST00000216014.4|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 	ENST00000409006.3|KDELR3|ENSG00000100196.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
hg19_v2_chr11_+_77532155_77532210	0.617105	SOX9	ENST00000532481.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000526415.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000393427.2|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000527134.1|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing 	ENST00000304716.8|AAMDC|ENSG00000087884.10|adipogenesis associated, Mth938 domain containing
hg19_v2_chr1_-_182360498_182360541	0.61177	SOX9	ENST00000417584.2|GLUL|ENSG00000135821.12|glutamate-ammonia ligase
hg19_v2_chr1_+_209602156_209602183	0.611385	SOX9	ENST00000429156.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000366437.3|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000603283.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding) 	ENST00000431096.1|MIR205HG|ENSG00000230937.5|MIR205 host gene (non-protein coding)
hg19_v2_chr9_-_85882145_85882202	0.610762	SOX9	ENST00000328788.1|FRMD3|ENSG00000172159.11|FERM domain containing 3
hg19_v2_chr21_+_17442799_17442853	0.607687	SOX9	ENST00000602580.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000458468.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478 	ENST00000602935.1|LINC00478|ENSG00000215386.6|long intergenic non-protein coding RNA 478
hg19_v2_chr7_+_116312411_116312502	0.602269	SOX9	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chrM_+_4431_4475	0.600923	SOX9	ENST00000361453.3|MT-ND2|ENSG00000198763.3|mitochondrially encoded NADH dehydrogenase 2
hg19_v2_chr11_-_76155618_76155676	0.600604	SOX9	ENST00000530759.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr1_+_93913713_93913839	0.600576	SOX9	ENST00000604705.1|FNBP1L|ENSG00000137942.12|formin binding protein 1-like 	ENST00000370253.2|FNBP1L|ENSG00000137942.12|formin binding protein 1-like
hg19_v2_chr7_-_107643567_107643657	0.599209	SOX9	ENST00000393559.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000439976.1|LAMB1|ENSG00000091136.9|laminin, beta 1 	ENST00000393560.1|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr3_+_69985734_69985754	0.598576	SOX9	ENST00000314557.6|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor 	ENST00000394351.3|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr18_-_21891460_21891506	0.597846	SOX9	ENST00000357041.4|OSBPL1A|ENSG00000141447.12|oxysterol binding protein-like 1A
hg19_v2_chrX_+_103028638_103028650	0.596667	SOX9	ENST00000434483.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr4_-_110723134_110723181	0.596352	SOX9	ENST00000510800.1|CFI|ENSG00000205403.8|complement factor I 	ENST00000512148.1|CFI|ENSG00000205403.8|complement factor I
hg19_v2_chr15_+_101402041_101402067	0.5911	SOX9	ENST00000558475.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000558641.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1	ENST00000559673.1|RP11-66B24.1|ENSG00000259604.1|RP11-66B24.1
hg19_v2_chr4_-_87028478_87028514	0.589634	SOX9	ENST00000515400.1|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395157.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr18_-_53177984_53178004	0.589149	SOX9	ENST00000543082.1|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr7_-_112635675_112635720	0.579917	SOX9	ENST00000447785.1|AC018464.3|ENSG00000234520.1|AC018464.3	ENST00000451962.1|AC018464.3|ENSG00000234520.1|AC018464.3
hg19_v2_chr16_+_15528332_15528385	0.579463	SOX9	ENST00000566490.1|C16orf45|ENSG00000166780.6|chromosome 16 open reading frame 45
hg19_v2_chr8_-_38325219_38325418	0.579342	SOX9	ENST00000533668.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000413133.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397108.4|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000526742.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000525001.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000425967.3|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000529552.1|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1 	ENST00000397113.2|FGFR1|ENSG00000077782.15|fibroblast growth factor receptor 1
hg19_v2_chr14_-_21516590_21516692	0.570469	SOX9	ENST00000555026.1|NDRG2|ENSG00000165795.16|NDRG family member 2
hg19_v2_chrX_-_17878827_17878846	0.567035	SOX9	ENST00000360011.1|RAI2|ENSG00000131831.13|retinoic acid induced 2
hg19_v2_chr20_-_1317555_1317555	0.563941	SOX9	ENST00000537552.1|AL136531.1|ENSG00000203630.3|HCG2043693; Uncharacterized protein
hg19_v2_chr11_+_68080077_68080127	0.563267	SOX9	ENST00000294304.7|LRP5|ENSG00000162337.7|low density lipoprotein receptor-related protein 5
hg19_v2_chr11_-_76155700_76155736	0.561558	SOX9	ENST00000572035.1|RP11-111M22.3|ENSG00000255135.3|RP11-111M22.3
hg19_v2_chr2_-_175629164_175629224	0.560433	SOX9	ENST00000409323.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000261007.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000348749.5|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chr3_+_69985792_69985874	0.554089	SOX9	ENST00000531774.1|MITF|ENSG00000187098.10|microphthalmia-associated transcription factor
hg19_v2_chr6_-_127840048_127840074	0.552331	SOX9	ENST00000467753.1|SOGA3|ENSG00000214338.6|SOGA family member 3
hg19_v2_chr19_+_48972459_48972490	0.551963	SOX9	ENST00000427476.1|CYTH2|ENSG00000105443.9|cytohesin 2
hg19_v2_chr1_-_205904950_205905037	0.546231	SOX9	ENST00000340781.4|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9
hg19_v2_chr3_-_48470838_48470872	0.544639	SOX9	ENST00000358459.4|PLXNB1|ENSG00000164050.8|plexin B1 	ENST00000358536.4|PLXNB1|ENSG00000164050.8|plexin B1
hg19_v2_chr11_-_44971702_44971759	0.543232	SOX9	ENST00000533940.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11 	ENST00000533937.1|TP53I11|ENSG00000175274.14|tumor protein p53 inducible protein 11
hg19_v2_chr10_-_105845536_105845581	0.541123	SOX9	ENST00000393211.3|COL17A1|ENSG00000065618.12|collagen, type XVII, alpha 1
hg19_v2_chr7_-_107643674_107643700	0.540717	SOX9	ENST00000222399.6|LAMB1|ENSG00000091136.9|laminin, beta 1
hg19_v2_chr2_+_223536428_223536505	0.533327	SOX9	ENST00000446656.3|MOGAT1|ENSG00000124003.9|monoacylglycerol O-acyltransferase 1
hg19_v2_chr16_-_46782221_46782263	0.529047	SOX9	ENST00000394809.4|MYLK3|ENSG00000140795.8|myosin light chain kinase 3
hg19_v2_chr17_-_10372875_10372876	0.52393	SOX9	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr15_-_37392703_37392717	0.521286	SOX9	ENST00000382766.2|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000444725.1|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr12_-_24715376_24715432	0.519033	SOX9	ENST00000446891.2|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1	ENST00000429944.2|RP11-444D3.1|ENSG00000255864.1|RP11-444D3.1
hg19_v2_chr2_+_168725458_168725458	0.517303	SOX9	ENST00000392690.3|B3GALT1|ENSG00000172318.4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
hg19_v2_chr7_+_134464376_134464413	0.516665	SOX9	ENST00000454108.1|CALD1|ENSG00000122786.15|caldesmon 1 	ENST00000361675.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr12_+_130646999_130647019	0.513255	SOX9	ENST00000539839.1|FZD10|ENSG00000111432.4|frizzled family receptor 10 	ENST00000229030.4|FZD10|ENSG00000111432.4|frizzled family receptor 10
hg19_v2_chr11_+_110001723_110001732	0.511765	SOX9	ENST00000528673.1|ZC3H12C|ENSG00000149289.6|zinc finger CCCH-type containing 12C
hg19_v2_chr1_+_164529004_164529060	0.510877	SOX9	ENST00000559240.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000367897.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000540236.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1 	ENST00000401534.1|PBX1|ENSG00000185630.14|pre-B-cell leukemia homeobox 1
hg19_v2_chr5_-_16936340_16936418	0.509343	SOX9	ENST00000507288.1|MYO10|ENSG00000145555.10|myosin X 	ENST00000513610.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr5_-_141338377_141338377	0.50429	SOX9	ENST00000510041.1|PCDH12|ENSG00000113555.4|protocadherin 12
hg19_v2_chr21_+_41239243_41239371	0.503836	SOX9	ENST00000328619.5|PCP4|ENSG00000183036.6|Purkinje cell protein 4
hg19_v2_chr13_+_98795505_98795522	0.503144	SOX9	ENST00000319562.6|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr10_+_70748487_70748498	0.502668	SOX9	ENST00000361983.4|KIAA1279|ENSG00000198954.4|KIAA1279
hg19_v2_chr7_+_128379449_128379463	0.502469	SOX9	ENST00000479257.1|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr12_+_95611569_95611608	0.499936	SOX9	ENST00000261219.6|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000551472.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein 	ENST00000552821.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr7_+_94537542_94537591	0.496606	SOX9	ENST00000433881.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr4_-_185726906_185726942	0.496314	SOX9	ENST00000513317.1|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr2_-_240322685_240322738	0.494506	SOX9	ENST00000544989.1|HDAC4|ENSG00000068024.12|histone deacetylase 4
hg19_v2_chr7_+_16793160_16793160	0.494116	SOX9	ENST00000262067.4|TSPAN13|ENSG00000106537.7|tetraspanin 13
hg19_v2_chr13_+_98795434_98795480	0.49181	SOX9	ENST00000376586.2|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr18_+_44497455_44497522	0.490065	SOX9	ENST00000592005.1|KATNAL2|ENSG00000167216.12|katanin p60 subunit A-like 2
hg19_v2_chr1_-_152297679_152297722	0.488204	SOX9	ENST00000368799.1|FLG|ENSG00000143631.10|filaggrin
hg19_v2_chr6_-_35464817_35464894	0.480341	SOX9	ENST00000338863.7|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr2_-_175629135_175629148	0.478526	SOX9	ENST00000409542.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle) 	ENST00000409219.1|CHRNA1|ENSG00000138435.10|cholinergic receptor, nicotinic, alpha 1 (muscle)
hg19_v2_chrX_+_68048803_68048892	0.4748	SOX9	ENST00000204961.4|EFNB1|ENSG00000090776.5|ephrin-B1
hg19_v2_chr19_-_5340730_5340859	0.472359	SOX9	ENST00000372412.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000357368.4|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000262963.6|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000348075.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S 	ENST00000353284.2|PTPRS|ENSG00000105426.10|protein tyrosine phosphatase, receptor type, S
hg19_v2_chr12_-_10251539_10251560	0.47054	SOX9	ENST00000420265.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr16_-_75590114_75590184	0.468739	SOX9	ENST00000568377.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000565067.1|TMEM231|ENSG00000205084.6|transmembrane protein 231 	ENST00000258173.6|TMEM231|ENSG00000205084.6|transmembrane protein 231
hg19_v2_chr12_-_91546926_91546972	0.468309	SOX9	ENST00000550758.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr1_-_117210290_117210376	0.464465	SOX9	ENST00000369483.1|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3 	ENST00000369486.3|IGSF3|ENSG00000143061.13|immunoglobulin superfamily, member 3
hg19_v2_chrX_+_65384052_65384112	0.463521	SOX9	ENST00000336279.5|HEPH|ENSG00000089472.12|hephaestin 	ENST00000458621.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr15_-_37392724_37392757	0.460955	SOX9	ENST00000424352.2|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr10_-_120101804_120101843	0.460843	SOX9	ENST00000369183.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A 	ENST00000369172.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A
hg19_v2_chr1_+_203096831_203096864	0.457076	SOX9	ENST00000337894.4|ADORA1|ENSG00000163485.11|adenosine A1 receptor
hg19_v2_chr7_+_128379346_128379447	0.454983	SOX9	ENST00000535011.2|CALU|ENSG00000128595.12|calumenin 	ENST00000542996.2|CALU|ENSG00000128595.12|calumenin 	ENST00000535623.1|CALU|ENSG00000128595.12|calumenin 	ENST00000538546.1|CALU|ENSG00000128595.12|calumenin 	ENST00000249364.4|CALU|ENSG00000128595.12|calumenin 	ENST00000449187.2|CALU|ENSG00000128595.12|calumenin
hg19_v2_chr12_-_49581152_49581241	0.450633	SOX9	ENST00000550811.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr3_+_189507460_189507471	0.450192	SOX9	ENST00000434928.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_-_39942322_39942461	0.449988	SOX9	ENST00000449889.1|JUP|ENSG00000173801.12|junction plakoglobin 	ENST00000465293.1|JUP|ENSG00000173801.12|junction plakoglobin
hg19_v2_chr19_+_34887220_34887220	0.442887	SOX9	ENST00000592740.1|RP11-618P17.4|ENSG00000266953.2|Uncharacterized protein
hg19_v2_chr11_-_35441597_35441613	0.441958	SOX9	ENST00000395753.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr3_+_89156799_89156831	0.437313	SOX9	ENST00000452448.2|EPHA3|ENSG00000044524.6|EPH receptor A3 	ENST00000494014.1|EPHA3|ENSG00000044524.6|EPH receptor A3
hg19_v2_chr14_+_91580357_91580454	0.437182	SOX9	ENST00000298858.4|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521081.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000520328.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000256324.10|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000524232.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522170.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000519950.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523879.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000521077.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000518665.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr1_-_205912577_205912593	0.435893	SOX9	ENST00000367135.3|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9 	ENST00000367134.2|SLC26A9|ENSG00000174502.14|solute carrier family 26 (anion exchanger), member 9
hg19_v2_chr7_+_16685756_16685820	0.433921	SOX9	ENST00000415365.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000258761.3|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000433922.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000452975.2|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2 	ENST00000405202.1|BZW2|ENSG00000136261.10|basic leucine zipper and W2 domains 2
hg19_v2_chr19_+_17579556_17579583	0.432906	SOX9	ENST00000442725.1|SLC27A1|ENSG00000130304.12|solute carrier family 27 (fatty acid transporter), member 1
hg19_v2_chr19_+_8455200_8455301	0.431412	SOX9	ENST00000601897.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family 	ENST00000594216.1|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr4_-_185729602_185729613	0.430476	SOX9	ENST00000437665.3|ACSL1|ENSG00000151726.9|acyl-CoA synthetase long-chain family member 1
hg19_v2_chr17_-_16472483_16472533	0.430472	SOX9	ENST00000395824.1|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000448349.2|ZNF287|ENSG00000141040.10|zinc finger protein 287 	ENST00000395825.3|ZNF287|ENSG00000141040.10|zinc finger protein 287
hg19_v2_chr9_+_19408999_19409057	0.430407	SOX9	ENST00000340967.2|ACER2|ENSG00000177076.4|alkaline ceramidase 2
hg19_v2_chr6_-_35464727_35464738	0.427989	SOX9	ENST00000402886.3|TEAD3|ENSG00000007866.14|TEA domain family member 3
hg19_v2_chr16_+_3068393_3068446	0.427337	SOX9	ENST00000573001.1|TNFRSF12A|ENSG00000006327.9|tumor necrosis factor receptor superfamily, member 12A
hg19_v2_chr5_+_140767452_140767452	0.426001	SOX9	ENST00000519479.1|PCDHGB4|ENSG00000253953.1|protocadherin gamma subfamily B, 4
hg19_v2_chr4_-_2264015_2264041	0.423562	SOX9	ENST00000337190.2|MXD4|ENSG00000123933.10|MAX dimerization protein 4
hg19_v2_chr12_+_95611516_95611527	0.422846	SOX9	ENST00000436874.1|VEZT|ENSG00000028203.13|vezatin, adherens junctions transmembrane protein
hg19_v2_chr14_-_103434869_103435038	0.421656	SOX9	ENST00000559043.1|CDC42BPB|ENSG00000198752.5|CDC42 binding protein kinase beta (DMPK-like)
hg19_v2_chr16_+_22524844_22525003	0.421397	SOX9	ENST00000538606.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000424340.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000517539.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5 	ENST00000528249.1|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr2_-_55276320_55276334	0.420786	SOX9	ENST00000357376.3|RTN4|ENSG00000115310.13|reticulon 4
hg19_v2_chr2_+_166428839_166428859	0.420072	SOX9	ENST00000342316.4|CSRNP3|ENSG00000178662.11|cysteine-serine-rich nuclear protein 3
hg19_v2_chr6_-_42110342_42110365	0.420036	SOX9	ENST00000356542.5|C6orf132|ENSG00000188112.4|chromosome 6 open reading frame 132
hg19_v2_chr8_+_70379072_70379222	0.416299	SOX9	ENST00000529134.1|SULF1|ENSG00000137573.9|sulfatase 1
hg19_v2_chr10_+_63661053_63661079	0.413821	SOX9	ENST00000279873.7|ARID5B|ENSG00000150347.10|AT rich interactive domain 5B (MRF1-like)
hg19_v2_chr14_+_53019993_53020137	0.413235	SOX9	ENST00000542169.2|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C 	ENST00000555622.1|GPR137C|ENSG00000180998.7|G protein-coupled receptor 137C
hg19_v2_chr7_-_27205136_27205164	0.409228	SOX9	ENST00000396345.1|HOXA9|ENSG00000078399.11|homeobox A9 	ENST00000343483.6|HOXA9|ENSG00000078399.11|homeobox A9
hg19_v2_chrX_+_103029314_103029342	0.406484	SOX9	ENST00000429977.1|PLP1|ENSG00000123560.9|proteolipid protein 1
hg19_v2_chr18_-_74728998_74729051	0.405493	SOX9	ENST00000359645.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397875.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397869.3|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578193.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000578873.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397866.4|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000528160.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000527041.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000526111.1|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000397865.5|MBP|ENSG00000197971.10|myelin basic protein 	ENST00000382582.3|MBP|ENSG00000197971.10|myelin basic protein
hg19_v2_chr5_+_40841410_40841489	0.403212	SOX9	ENST00000381677.3|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr6_+_32132360_32132437	0.403161	SOX9	ENST00000333845.6|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000395512.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8 	ENST00000432129.1|EGFL8|ENSG00000241404.2|EGF-like-domain, multiple 8
hg19_v2_chr5_-_179780312_179780387	0.4018	SOX9	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr3_-_128294929_128294929	0.401094	SOX9	ENST00000356020.2|C3orf27|ENSG00000198685.2|chromosome 3 open reading frame 27
hg19_v2_chr1_-_31381528_31381659	0.399043	SOX9	ENST00000339394.6|SDC3|ENSG00000162512.11|syndecan 3
hg19_v2_chr9_-_139658965_139658975	0.396987	SOX9	ENST00000316144.5|LCN15|ENSG00000177984.6|lipocalin 15
hg19_v2_chrX_+_49126294_49126337	0.39391	SOX9	ENST00000466508.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000438316.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000055335.6|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F 	ENST00000495799.1|PPP1R3F|ENSG00000049769.8|protein phosphatase 1, regulatory subunit 3F
hg19_v2_chr12_-_10251603_10251619	0.393763	SOX9	ENST00000457018.2|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr5_+_110073853_110073866	0.392934	SOX9	ENST00000513807.1|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46 	ENST00000509442.2|SLC25A46|ENSG00000164209.12|solute carrier family 25, member 46
hg19_v2_chr1_+_161195835_161195864	0.391146	SOX9	ENST00000545897.1|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr1_-_204463829_204463857	0.388446	SOX9	ENST00000429009.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta 	ENST00000415899.1|PIK3C2B|ENSG00000133056.9|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
hg19_v2_chr16_-_15474904_15474904	0.384136	SOX9	ENST00000534094.1|NPIPA5|ENSG00000183793.9|nuclear pore complex interacting protein family, member A5
hg19_v2_chr12_+_113495492_113495503	0.382919	SOX9	ENST00000257600.3|DTX1|ENSG00000135144.3|deltex homolog 1 (Drosophila)
hg19_v2_chr7_-_27219632_27219660	0.380536	SOX9	ENST00000470747.4|RP1-170O19.20|ENSG00000257184.2|Uncharacterized protein
hg19_v2_chr7_-_111846435_111846471	0.37787	SOX9	ENST00000437633.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4 	ENST00000428084.1|DOCK4|ENSG00000128512.15|dedicator of cytokinesis 4
hg19_v2_chrX_+_65384182_65384231	0.37453	SOX9	ENST00000441993.2|HEPH|ENSG00000089472.12|hephaestin 	ENST00000419594.1|HEPH|ENSG00000089472.12|hephaestin
hg19_v2_chr4_+_54243917_54244006	0.367986	SOX9	ENST00000507166.1|FIP1L1|ENSG00000145216.11|factor interacting with PAPOLA and CPSF1
hg19_v2_chr1_+_64239657_64239724	0.365806	SOX9	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr1_+_16085244_16085255	0.363302	SOX9	ENST00000400773.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr17_+_40119801_40119821	0.362508	SOX9	ENST00000585452.1|CNP|ENSG00000173786.12|2',3'-cyclic nucleotide 3' phosphodiesterase
hg19_v2_chr12_-_24103841_24103880	0.362459	SOX9	ENST00000541847.1|SOX5|ENSG00000134532.11|SRY (sex determining region Y)-box 5
hg19_v2_chr3_+_189507523_189507590	0.357768	SOX9	ENST00000437221.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392463.2|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000392461.3|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000449992.1|TP63|ENSG00000073282.8|tumor protein p63 	ENST00000456148.1|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr19_+_7580944_7581031	0.357392	SOX9	ENST00000597229.1|ZNF358|ENSG00000198816.5|zinc finger protein 358
hg19_v2_chr10_-_15130767_15130782	0.357056	SOX9	ENST00000356189.5|ACBD7|ENSG00000176244.6|acyl-CoA binding domain containing 7
hg19_v2_chr3_-_149688896_149688970	0.355906	SOX9	ENST00000239940.7|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr12_+_54378849_54378884	0.355595	SOX9	ENST00000515593.1|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr1_+_16085263_16085314	0.354583	SOX9	ENST00000483633.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000502739.1|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1 	ENST00000431771.2|FBLIM1|ENSG00000162458.8|filamin binding LIM protein 1
hg19_v2_chr7_+_134464414_134464429	0.353788	SOX9	ENST00000361901.2|CALD1|ENSG00000122786.15|caldesmon 1
hg19_v2_chr5_+_140787600_140787770	0.348084	SOX9	ENST00000520790.1|PCDHGB6|ENSG00000253305.1|protocadherin gamma subfamily B, 6
hg19_v2_chr3_+_49507674_49507758	0.346271	SOX9	ENST00000431960.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000452317.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000435508.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000452060.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000428779.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000419218.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000430636.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr11_-_35441524_35441578	0.34578	SOX9	ENST00000395750.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENST00000449068.1|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr15_-_42186248_42186275	0.34537	SOX9	ENST00000320955.6|SPTBN5|ENSG00000137877.8|spectrin, beta, non-erythrocytic 5
hg19_v2_chrX_-_73512411_73512444	0.344825	SOX9	ENST00000602576.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding) 	ENST00000429124.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr10_-_120101752_120101791	0.344614	SOX9	ENST00000369170.4|FAM204A|ENSG00000165669.9|family with sequence similarity 204, member A
hg19_v2_chr14_+_85996507_85996572	0.343658	SOX9	ENST00000554746.1|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr14_+_91580708_91580730	0.343003	SOX9	ENST00000518868.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr3_+_49507559_49507580	0.341486	SOX9	ENST00000421560.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000308775.2|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000545947.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000541308.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000539901.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000538711.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1) 	ENST00000418588.1|DAG1|ENSG00000173402.7|dystroglycan 1 (dystrophin-associated glycoprotein 1)
hg19_v2_chr9_+_22446814_22446840	0.340017	SOX9	ENST00000325870.2|DMRTA1|ENSG00000176399.3|DMRT-like family A1
hg19_v2_chr14_+_91580732_91580746	0.338959	SOX9	ENST00000519019.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523816.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517518.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr11_-_35440796_35440916	0.337127	SOX9	ENST00000278379.3|SLC1A2|ENSG00000110436.7|solute carrier family 1 (glial high affinity glutamate transporter), member 2
hg19_v2_chr12_-_52887034_52887049	0.336089	SOX9	ENST00000330722.6|KRT6A|ENSG00000205420.6|keratin 6A
hg19_v2_chr8_+_30496078_30496130	0.334993	SOX9	ENST00000517349.1|SMIM18|ENSG00000253457.1|small integral membrane protein 18
hg19_v2_chr16_-_30798492_30798535	0.33255	SOX9	ENST00000262525.4|ZNF629|ENSG00000102870.4|zinc finger protein 629
hg19_v2_chr6_-_11232891_11232915	0.331533	SOX9	ENST00000379433.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9 	ENST00000379446.5|NEDD9|ENSG00000111859.12|neural precursor cell expressed, developmentally down-regulated 9
hg19_v2_chr1_-_65533390_65533443	0.32692	SOX9	ENST00000448344.1|RP4-535B20.1|ENSG00000231485.1|RP4-535B20.1
hg19_v2_chr3_-_171489085_171489158	0.323577	SOX9	ENST00000418087.1|PLD1|ENSG00000075651.11|phospholipase D1, phosphatidylcholine-specific
hg19_v2_chr14_+_91580777_91580793	0.322975	SOX9	ENST00000525393.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000428926.2|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000517362.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr11_+_111807863_111807937	0.319662	SOX9	ENST00000440460.2|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr7_-_122840015_122840040	0.318639	SOX9	ENST00000194130.2|SLC13A1|ENSG00000081800.4|solute carrier family 13 (sodium/sulfate symporter), member 1
hg19_v2_chr1_+_244998918_244998975	0.317381	SOX9	ENST00000366528.3|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr1_+_228337553_228337602	0.316769	SOX9	ENST00000366714.2|GJC2|ENSG00000198835.3|gap junction protein, gamma 2, 47kDa
hg19_v2_chr14_-_51027838_51027851	0.31519	SOX9	ENST00000555216.1|MAP4K5|ENSG00000012983.7|mitogen-activated protein kinase kinase kinase kinase 5
hg19_v2_chr10_-_62332357_62332428	0.314571	SOX9	ENST00000503366.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr3_-_52486841_52486882	0.310706	SOX9	ENST00000496590.1|TNNC1|ENSG00000114854.3|troponin C type 1 (slow)
hg19_v2_chr14_+_85996471_85996497	0.310506	SOX9	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr14_+_59655369_59655458	0.309487	SOX9	ENST00000360909.3|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000351081.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1 	ENST00000556135.1|DAAM1|ENSG00000100592.11|dishevelled associated activator of morphogenesis 1
hg19_v2_chr12_-_10251576_10251599	0.307409	SOX9	ENST00000315330.4|CLEC1A|ENSG00000150048.6|C-type lectin domain family 1, member A
hg19_v2_chr8_-_93115508_93115552	0.307148	SOX9	ENST00000518832.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr2_+_54683419_54683442	0.304717	SOX9	ENST00000356805.4|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr1_-_225840747_225840860	0.301676	SOX9	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr17_+_46970178_46970180	0.296699	SOX9	ENST00000393366.2|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000506855.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr7_-_27239703_27239725	0.296652	SOX9	ENST00000222753.4|HOXA13|ENSG00000106031.6|homeobox A13
hg19_v2_chr8_-_20161466_20161481	0.294098	SOX9	ENST00000381569.1|LZTS1|ENSG00000061337.11|leucine zipper, putative tumor suppressor 1
hg19_v2_chr1_+_200708671_200708744	0.293485	SOX9	ENST00000358823.2|CAMSAP2|ENSG00000118200.10|calmodulin regulated spectrin-associated protein family, member 2
hg19_v2_chr1_+_25071848_25071944	0.293173	SOX9	ENST00000374379.4|CLIC4|ENSG00000169504.10|chloride intracellular channel 4
hg19_v2_chr14_+_91581011_91581044	0.291379	SOX9	ENST00000523894.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000522322.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159 	ENST00000523771.1|C14orf159|ENSG00000133943.16|chromosome 14 open reading frame 159
hg19_v2_chr7_-_44887620_44887710	0.289822	SOX9	ENST00000349299.3|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000521529.1|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000308153.4|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000350771.3|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000222690.6|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000381124.5|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000437072.1|H2AFV|ENSG00000105968.14|H2A histone family, member V 	ENST00000446531.1|H2AFV|ENSG00000105968.14|H2A histone family, member V
hg19_v2_chr15_-_52944231_52944268	0.289322	SOX9	ENST00000546305.2|FAM214A|ENSG00000047346.8|family with sequence similarity 214, member A
hg19_v2_chr18_+_56530794_56530845	0.288628	SOX9	ENST00000590285.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000586085.1|ZNF532|ENSG00000074657.9|zinc finger protein 532 	ENST00000589288.1|ZNF532|ENSG00000074657.9|zinc finger protein 532
hg19_v2_chr5_-_88180342_88180385	0.287229	SOX9	ENST00000502983.1|MEF2C|ENSG00000081189.9|myocyte enhancer factor 2C
hg19_v2_chr2_+_61293021_61293093	0.282854	SOX9	ENST00000402291.1|KIAA1841|ENSG00000162929.9|KIAA1841
hg19_v2_chrX_+_135579238_135579416	0.282254	SOX9	ENST00000535601.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000448450.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1 	ENST00000425695.1|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr10_-_128110441_128110456	0.281672	SOX9	ENST00000456514.1|LINC00601|ENSG00000235180.1|long intergenic non-protein coding RNA 601
hg19_v2_chr7_+_111846741_111846776	0.280976	SOX9	ENST00000421043.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000425229.1|ZNF277|ENSG00000198839.5|zinc finger protein 277 	ENST00000450657.1|ZNF277|ENSG00000198839.5|zinc finger protein 277
hg19_v2_chr20_+_3827459_3827534	0.280881	SOX9	ENST00000416600.2|MAVS|ENSG00000088888.13|mitochondrial antiviral signaling protein 	ENST00000428216.2|MAVS|ENSG00000088888.13|mitochondrial antiviral signaling protein
hg19_v2_chr22_-_38480100_38480159	0.279534	SOX9	ENST00000427592.1|SLC16A8|ENSG00000100156.6|solute carrier family 16 (monocarboxylate transporter), member 8
hg19_v2_chr14_-_85996332_85996403	0.275771	SOX9	ENST00000380722.1|RP11-497E19.1|ENSG00000205562.1|RP11-497E19.1
hg19_v2_chr8_-_21645804_21645986	0.275288	SOX9	ENST00000518077.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2 	ENST00000517892.1|GFRA2|ENSG00000168546.6|GDNF family receptor alpha 2
hg19_v2_chr17_+_46970134_46970170	0.275026	SOX9	ENST00000503641.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) 	ENST00000514808.1|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr1_+_161195781_161195795	0.274812	SOX9	ENST00000367988.3|TOMM40L|ENSG00000158882.8|translocase of outer mitochondrial membrane 40 homolog (yeast)-like
hg19_v2_chr3_-_149688655_149688737	0.268609	SOX9	ENST00000461930.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000423691.2|PFN2|ENSG00000070087.9|profilin 2 	ENST00000490975.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000461868.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000452853.2|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr19_+_8455077_8455083	0.268116	SOX9	ENST00000328024.6|RAB11B|ENSG00000185236.7|RAB11B, member RAS oncogene family
hg19_v2_chr17_+_67498538_67498570	0.268036	SOX9	ENST00000589647.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr4_+_154125565_154125626	0.267002	SOX9	ENST00000338700.5|TRIM2|ENSG00000109654.10|tripartite motif containing 2
hg19_v2_chr12_-_110011288_110011347	0.266691	SOX9	ENST00000540016.1|MMAB|ENSG00000139428.7|methylmalonic aciduria (cobalamin deficiency) cblB type 	ENST00000266839.5|MMAB|ENSG00000139428.7|methylmalonic aciduria (cobalamin deficiency) cblB type
hg19_v2_chr1_+_160370344_160370406	0.265268	SOX9	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr12_+_54378923_54378970	0.265203	SOX9	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr4_-_5894777_5894799	0.264634	SOX9	ENST00000324989.7|CRMP1|ENSG00000072832.10|collapsin response mediator protein 1
hg19_v2_chr16_-_19533404_19533467	0.263132	SOX9	ENST00000353258.3|GDE1|ENSG00000006007.7|glycerophosphodiester phosphodiesterase 1
hg19_v2_chr1_+_8378140_8378187	0.262483	SOX9	ENST00000377479.2|SLC45A1|ENSG00000162426.10|solute carrier family 45, member 1
hg19_v2_chr20_-_45984401_45984514	0.262003	SOX9	ENST00000311275.7|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chr8_-_61429315_61429359	0.260409	SOX9	ENST00000530725.1|RP11-163N6.2|ENSG00000251396.2|RP11-163N6.2	ENST00000532232.1|RP11-163N6.2|ENSG00000251396.2|RP11-163N6.2
hg19_v2_chr20_-_13971255_13971264	0.259538	SOX9	ENST00000284951.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans) 	ENST00000378072.5|SEL1L2|ENSG00000101251.7|sel-1 suppressor of lin-12-like 2 (C. elegans)
hg19_v2_chr2_+_220492116_220492137	0.259108	SOX9	ENST00000373760.2|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr11_+_118955583_118955640	0.25785	SOX9	ENST00000278715.3|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000536813.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000537841.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000542729.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000546302.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000442944.2|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000544387.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase 	ENST00000543090.1|HMBS|ENSG00000256269.2|hydroxymethylbilane synthase
hg19_v2_chr5_+_40841276_40841312	0.257646	SOX9	ENST00000254691.5|CARD6|ENSG00000132357.9|caspase recruitment domain family, member 6
hg19_v2_chr3_-_71777824_71777871	0.256225	SOX9	ENST00000469524.1|EIF4E3|ENSG00000163412.8|eukaryotic translation initiation factor 4E family member 3
hg19_v2_chr9_+_108463234_108463265	0.25585	SOX9	ENST00000374688.1|TMEM38B|ENSG00000095209.7|transmembrane protein 38B
hg19_v2_chr11_-_75236867_75236968	0.255435	SOX9	ENST00000376282.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5 	ENST00000336898.3|GDPD5|ENSG00000158555.10|glycerophosphodiester phosphodiesterase domain containing 5
hg19_v2_chr19_-_44100275_44100302	0.255327	SOX9	ENST00000422989.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q 	ENST00000598324.1|IRGQ|ENSG00000167378.4|immunity-related GTPase family, Q
hg19_v2_chr12_-_50294033_50294044	0.255146	SOX9	ENST00000552669.1|FAIM2|ENSG00000135472.4|Fas apoptotic inhibitory molecule 2
hg19_v2_chr13_-_27334879_27334930	0.254896	SOX9	ENST00000405846.3|GPR12|ENSG00000132975.6|G protein-coupled receptor 12
hg19_v2_chr15_-_34659349_34659479	0.253122	SOX9	ENST00000314891.6|LPCAT4|ENSG00000176454.9|lysophosphatidylcholine acyltransferase 4
hg19_v2_chr1_+_244998602_244998646	0.252734	SOX9	ENST00000411948.2|COX20|ENSG00000203667.5|COX20 cytochrome C oxidase assembly factor
hg19_v2_chr3_+_189507432_189507459	0.251654	SOX9	ENST00000354600.5|TP63|ENSG00000073282.8|tumor protein p63
hg19_v2_chr17_+_46970127_46970132	0.247978	SOX9	ENST00000355938.5|ATP5G1|ENSG00000159199.9|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
hg19_v2_chr17_+_9066252_9066271	0.247863	SOX9	ENST00000436734.1|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr16_+_3019309_3019356	0.244155	SOX9	ENST00000576565.1|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr10_-_81205373_81205429	0.243614	SOX9	ENST00000372336.3|ZCCHC24|ENSG00000165424.6|zinc finger, CCHC domain containing 24
hg19_v2_chr4_+_71570430_71570536	0.243433	SOX9	ENST00000417478.2|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr2_+_220492287_220492338	0.242331	SOX9	ENST00000273063.6|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3 	ENST00000373762.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr11_-_5276008_5276041	0.241299	SOX9	ENST00000336906.4|HBG2|ENSG00000196565.8|hemoglobin, gamma G
hg19_v2_chrX_+_135579670_135579715	0.240225	SOX9	ENST00000218364.4|HTATSF1|ENSG00000102241.7|HIV-1 Tat specific factor 1
hg19_v2_chr19_-_10491130_10491220	0.238099	SOX9	ENST00000530829.1|TYK2|ENSG00000105397.9|tyrosine kinase 2 	ENST00000529370.1|TYK2|ENSG00000105397.9|tyrosine kinase 2
hg19_v2_chr2_+_54198210_54198293	0.237258	SOX9	ENST00000607452.1|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type 	ENST00000422521.2|ACYP2|ENSG00000170634.8|acylphosphatase 2, muscle type
hg19_v2_chr19_+_39971505_39971518	0.23622	SOX9	ENST00000544017.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
hg19_v2_chr19_+_58514229_58514289	0.236194	SOX9	ENST00000546949.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000553254.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein  	ENST00000547364.1|CTD-2368P22.1|ENSG00000176593.3|HCG1811579; Uncharacterized protein
hg19_v2_chr20_-_43150601_43150751	0.235484	SOX9	ENST00000541235.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000255175.1|SERINC3|ENSG00000132824.9|serine incorporator 3 	ENST00000342374.4|SERINC3|ENSG00000132824.9|serine incorporator 3
hg19_v2_chr16_+_75033210_75033288	0.233236	SOX9	ENST00000566250.1|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000567962.1|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr16_+_14802801_14802801	0.233093	SOX9	ENST00000526520.1|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3 	ENST00000531598.2|NPIPA3|ENSG00000224712.6|nuclear pore complex interacting protein family, member A3
hg19_v2_chr7_+_102389434_102389497	0.231225	SOX9	ENST00000409231.3|FAM185A|ENSG00000222011.4|family with sequence similarity 185, member A 	ENST00000418198.1|FAM185A|ENSG00000222011.4|family with sequence similarity 185, member A
hg19_v2_chr6_-_135375921_135375969	0.230761	SOX9	ENST00000367820.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000314674.3|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000524715.1|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000415177.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae) 	ENST00000367826.2|HBS1L|ENSG00000112339.10|HBS1-like (S. cerevisiae)
hg19_v2_chr19_+_39971470_39971498	0.229518	SOX9	ENST00000607714.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000599794.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000597666.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000601403.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) 	ENST00000602028.1|TIMM50|ENSG00000105197.6|translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae)
hg19_v2_chr6_-_27782548_27782607	0.229342	SOX9	ENST00000333151.3|HIST1H2AJ|ENSG00000182611.3|histone cluster 1, H2aj
hg19_v2_chr15_+_90895471_90895572	0.228114	SOX9	ENST00000354377.3|ZNF774|ENSG00000196391.6|zinc finger protein 774 	ENST00000379090.5|ZNF774|ENSG00000196391.6|zinc finger protein 774
hg19_v2_chr10_-_98118724_98118738	0.225396	SOX9	ENST00000393870.2|OPALIN|ENSG00000197430.6|oligodendrocytic myelin paranodal and inner loop protein
hg19_v2_chr12_+_78224667_78224685	0.224663	SOX9	ENST00000549464.1|NAV3|ENSG00000067798.9|neuron navigator 3
hg19_v2_chr8_-_110615669_110615692	0.222289	SOX9	ENST00000533394.1|SYBU|ENSG00000147642.12|syntabulin (syntaxin-interacting)
hg19_v2_chr3_-_52001448_52001478	0.220642	SOX9	ENST00000461554.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000395013.3|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000428823.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000483411.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000461544.1|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4 	ENST00000355852.2|PCBP4|ENSG00000090097.16|poly(rC) binding protein 4
hg19_v2_chrX_-_2418936_2419024	0.216297	SOX9	ENST00000461691.1|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381223.4|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000381222.2|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1 	ENST00000412516.2|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked 	ENST00000334651.5|DHRSX|ENSG00000169084.8|dehydrogenase/reductase (SDR family) X-linked
hg19_v2_chr7_+_94537247_94537342	0.214503	SOX9	ENST00000422324.1|PPP1R9A|ENSG00000158528.7|protein phosphatase 1, regulatory subunit 9A
hg19_v2_chr1_+_26503894_26504025	0.214418	SOX9	ENST00000361530.6|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1 	ENST00000374253.5|CNKSR1|ENSG00000142675.13|connector enhancer of kinase suppressor of Ras 1
hg19_v2_chr14_-_103989033_103989176	0.214001	SOX9	ENST00000553878.1|CKB|ENSG00000166165.8|creatine kinase, brain 	ENST00000557530.1|CKB|ENSG00000166165.8|creatine kinase, brain
hg19_v2_chrX_-_110654147_110654194	0.213777	SOX9	ENST00000358070.4|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr10_-_13570533_13570533	0.211892	SOX9	ENST00000396900.2|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000396898.2|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr15_+_85923856_85923987	0.211126	SOX9	ENST00000560302.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000394518.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000361243.2|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13 	ENST00000560256.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr11_-_79151695_79151710	0.210808	SOX9	ENST00000278550.7|TENM4|ENSG00000149256.10|teneurin transmembrane protein 4
hg19_v2_chr14_+_100070869_100070893	0.210186	SOX9	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr15_-_54267147_54267170	0.206343	SOX9	ENST00000558866.1|RP11-643A5.2|ENSG00000259669.1|RP11-643A5.2	ENST00000558920.1|RP11-643A5.2|ENSG00000259669.1|RP11-643A5.2
hg19_v2_chr12_+_64238539_64238600	0.205995	SOX9	ENST00000357825.3|SRGAP1|ENSG00000196935.4|SLIT-ROBO Rho GTPase activating protein 1
hg19_v2_chr9_-_35072585_35072632	0.205023	SOX9	ENST00000448530.1|VCP|ENSG00000165280.11|valosin containing protein
hg19_v2_chrX_-_20159934_20159976	0.204834	SOX9	ENST00000379593.1|EIF1AX|ENSG00000173674.6|eukaryotic translation initiation factor 1A, X-linked 	ENST00000379607.5|EIF1AX|ENSG00000173674.6|eukaryotic translation initiation factor 1A, X-linked
hg19_v2_chr12_-_91451758_91451763	0.204665	SOX9	ENST00000266719.3|KERA|ENSG00000139330.5|keratocan
hg19_v2_chrX_-_2418596_2418621	0.202134	SOX9	ENST00000381218.3|ZBED1|ENSG00000214717.5|zinc finger, BED-type containing 1
hg19_v2_chr17_+_7761301_7761396	0.200234	SOX9	ENST00000332439.4|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1 	ENST00000570446.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr6_-_128841503_128841870	0.199804	SOX9	ENST00000368215.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000532331.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368213.5|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368207.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000525459.1|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368210.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368226.4|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K 	ENST00000368227.3|PTPRK|ENSG00000152894.10|protein tyrosine phosphatase, receptor type, K
hg19_v2_chr7_+_23146271_23146285	0.198134	SOX9	ENST00000545771.1|KLHL7|ENSG00000122550.13|kelch-like family member 7
hg19_v2_chr15_+_80696666_80696700	0.196868	SOX9	ENST00000303329.4|ARNT2|ENSG00000172379.14|aryl-hydrocarbon receptor nuclear translocator 2
hg19_v2_chr17_+_33914424_33914455	0.196156	SOX9	ENST00000590432.1|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr19_-_59031118_59031193	0.195484	SOX9	ENST00000600990.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr7_+_5632436_5632454	0.195126	SOX9	ENST00000340250.6|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) 	ENST00000382361.3|FSCN1|ENSG00000075618.13|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
hg19_v2_chr16_+_3019552_3019559	0.194582	SOX9	ENST00000572687.1|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chr2_-_50201327_50201341	0.1924	SOX9	ENST00000412315.1|NRXN1|ENSG00000179915.16|neurexin 1
hg19_v2_chr10_+_102759545_102759610	0.191316	SOX9	ENST00000454422.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr18_+_22208146_22208171	0.19061	SOX9	ENST00000577994.1|RP11-449D8.1|ENSG00000265485.1|RP11-449D8.1
hg19_v2_chr11_+_1860200_1860219	0.1894	SOX9	ENST00000381911.1|TNNI2|ENSG00000130598.11|troponin I type 2 (skeletal, fast)
hg19_v2_chr16_+_524900_524933	0.186731	SOX9	ENST00000449879.1|RAB11FIP3|ENSG00000090565.11|RAB11 family interacting protein 3 (class II)
hg19_v2_chr4_+_175205162_175205169	0.186094	SOX9	ENST00000503053.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr4_+_78078304_78078406	0.185667	SOX9	ENST00000316355.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000354403.5|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000502280.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr3_+_25469802_25469866	0.184646	SOX9	ENST00000330688.4|RARB|ENSG00000077092.14|retinoic acid receptor, beta
hg19_v2_chr5_+_179135246_179135327	0.182739	SOX9	ENST00000508787.1|CANX|ENSG00000127022.10|calnexin
hg19_v2_chrX_+_46306624_46306709	0.180749	SOX9	ENST00000360017.5|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr12_-_54019755_54019804	0.180644	SOX9	ENST00000588078.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591834.1|RP11-793H13.10|ENSG00000267281.2|Uncharacterized protein  	ENST00000551480.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548118.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000456903.4|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chr2_-_204399976_204400011	0.180468	SOX9	ENST00000457812.1|RAPH1|ENSG00000173166.13|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
hg19_v2_chr12_+_124457746_124457842	0.179941	SOX9	ENST00000392404.3|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000538932.2|ZNF664|ENSG00000179195.11|zinc finger protein 664 	ENST00000540762.2|FAM101A|ENSG00000178882.9|family with sequence similarity 101, member A 	ENST00000337815.4|ZNF664|ENSG00000179195.11|zinc finger protein 664
hg19_v2_chr13_-_107214291_107214305	0.179638	SOX9	ENST00000375926.1|ARGLU1|ENSG00000134884.9|arginine and glutamate rich 1
hg19_v2_chr19_-_40324767_40324841	0.177957	SOX9	ENST00000601972.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000430012.2|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000323039.5|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000348817.3|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr3_-_196987309_196987350	0.176457	SOX9	ENST00000453607.1|DLG1|ENSG00000075711.16|discs, large homolog 1 (Drosophila)
hg19_v2_chr8_+_79578282_79578334	0.175073	SOX9	ENST00000263849.4|ZC2HC1A|ENSG00000104427.7|zinc finger, C2HC-type containing 1A
hg19_v2_chr12_+_124997766_124997772	0.174887	SOX9	ENST00000543970.1|RP11-83B20.1|ENSG00000214650.2|RP11-83B20.1
hg19_v2_chr13_+_32634993_32635015	0.174153	SOX9	ENST00000436046.1|FRY|ENSG00000073910.15|furry homolog (Drosophila)
hg19_v2_chr3_+_44690211_44690267	0.173804	SOX9	ENST00000396056.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000432115.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000415571.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000399560.2|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000296092.3|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000542250.1|ZNF35|ENSG00000169981.6|zinc finger protein 35 	ENST00000453164.1|ZNF35|ENSG00000169981.6|zinc finger protein 35
hg19_v2_chr8_+_126442563_126442624	0.173697	SOX9	ENST00000311922.3|TRIB1|ENSG00000173334.3|tribbles pseudokinase 1
hg19_v2_chrX_-_73512358_73512402	0.173055	SOX9	ENST00000602776.1|FTX|ENSG00000230590.3|FTX transcript, XIST regulator (non-protein coding)
hg19_v2_chr11_-_111649015_111649030	0.172816	SOX9	ENST00000529841.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr19_-_15490568_15490606	0.172499	SOX9	ENST00000269701.2|AKAP8|ENSG00000105127.4|A kinase (PRKA) anchor protein 8
hg19_v2_chr17_+_7761013_7761074	0.170235	SOX9	ENST00000571846.1|CYB5D1|ENSG00000182224.7|cytochrome b5 domain containing 1
hg19_v2_chr11_+_120255997_120256048	0.168847	SOX9	ENST00000532993.1|ARHGEF12|ENSG00000196914.4|Rho guanine nucleotide exchange factor (GEF) 12
hg19_v2_chr8_-_82373809_82373815	0.168498	SOX9	ENST00000379071.2|FABP9|ENSG00000205186.2|fatty acid binding protein 9, testis
hg19_v2_chr15_+_85923797_85923844	0.168255	SOX9	ENST00000559362.1|AKAP13|ENSG00000170776.15|A kinase (PRKA) anchor protein 13
hg19_v2_chr11_+_34073269_34073287	0.167787	SOX9	ENST00000389645.3|CAPRIN1|ENSG00000135387.15|cell cycle associated protein 1
hg19_v2_chr1_+_62417957_62417993	0.166934	SOX9	ENST00000307297.7|INADL|ENSG00000132849.14|InaD-like (Drosophila) 	ENST00000543708.1|INADL|ENSG00000132849.14|InaD-like (Drosophila)
hg19_v2_chr18_+_18943554_18943587	0.166621	SOX9	ENST00000580732.2|GREB1L|ENSG00000141449.10|growth regulation by estrogen in breast cancer-like
hg19_v2_chr16_+_3019246_3019304	0.165966	SOX9	ENST00000318782.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV 	ENST00000293978.8|PAQR4|ENSG00000162073.9|progestin and adipoQ receptor family member IV
hg19_v2_chrX_-_135962923_135962943	0.164429	SOX9	ENST00000565438.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr11_+_126139005_126139104	0.164227	SOX9	ENST00000263578.5|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000442061.2|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1 	ENST00000532125.1|FOXRED1|ENSG00000110074.6|FAD-dependent oxidoreductase domain containing 1
hg19_v2_chr2_-_37501692_37501747	0.164004	SOX9	ENST00000443977.1|PRKD3|ENSG00000115825.5|protein kinase D3
hg19_v2_chr2_+_220491973_220492049	0.162031	SOX9	ENST00000358055.3|SLC4A3|ENSG00000114923.12|solute carrier family 4 (anion exchanger), member 3
hg19_v2_chr1_-_26232522_26232644	0.161391	SOX9	ENST00000399728.1|STMN1|ENSG00000117632.16|stathmin 1
hg19_v2_chrX_+_107068959_107068985	0.161318	SOX9	ENST00000451923.1|MID2|ENSG00000080561.9|midline 2
hg19_v2_chr17_+_67498396_67498409	0.161061	SOX9	ENST00000588110.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr4_-_108204846_108204887	0.15882	SOX9	ENST00000513208.1|DKK2|ENSG00000155011.4|dickkopf WNT signaling pathway inhibitor 2
hg19_v2_chr14_+_67291158_67291192	0.158731	SOX9	ENST00000555456.1|GPHN|ENSG00000171723.11|gephyrin
hg19_v2_chr1_+_78769549_78769568	0.158522	SOX9	ENST00000370758.1|PTGFR|ENSG00000122420.5|prostaglandin F receptor (FP)
hg19_v2_chr12_-_54020107_54020199	0.157478	SOX9	ENST00000588232.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000548446.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000420353.2|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000591397.1|ATF7|ENSG00000170653.14|activating transcription factor 7 	ENST00000415113.1|ATF7|ENSG00000170653.14|activating transcription factor 7
hg19_v2_chr3_+_9439579_9439592	0.156996	SOX9	ENST00000406341.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr8_-_66753682_66753743	0.156239	SOX9	ENST00000396642.3|PDE7A|ENSG00000205268.6|phosphodiesterase 7A
hg19_v2_chr19_+_58694742_58694863	0.155327	SOX9	ENST00000597528.1|ZNF274|ENSG00000171606.13|zinc finger protein 274 	ENST00000594839.1|ZNF274|ENSG00000171606.13|zinc finger protein 274
hg19_v2_chr9_+_139221880_139221932	0.154435	SOX9	ENST00000392945.3|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1 	ENST00000440944.1|GPSM1|ENSG00000160360.7|G-protein signaling modulator 1
hg19_v2_chr14_-_88459503_88459615	0.154195	SOX9	ENST00000393568.4|GALC|ENSG00000054983.12|galactosylceramidase 	ENST00000261304.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr6_-_41040268_41040353	0.154125	SOX9	ENST00000373154.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000244558.9|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000464633.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000424266.2|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000479950.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000482515.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr19_-_59030921_59030974	0.153762	SOX9	ENST00000354590.3|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45 	ENST00000596739.1|ZBTB45|ENSG00000119574.8|zinc finger and BTB domain containing 45
hg19_v2_chr7_-_107968999_107969099	0.151336	SOX9	ENST00000456431.1|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr14_-_88459182_88459236	0.150183	SOX9	ENST00000544807.2|GALC|ENSG00000054983.12|galactosylceramidase
hg19_v2_chr3_-_149688502_149688526	0.147933	SOX9	ENST00000481767.1|PFN2|ENSG00000070087.9|profilin 2 	ENST00000475518.1|PFN2|ENSG00000070087.9|profilin 2
hg19_v2_chr10_+_102759045_102759233	0.147755	SOX9	ENST00000370220.1|LZTS2|ENSG00000107816.13|leucine zipper, putative tumor suppressor 2
hg19_v2_chr4_-_83351294_83351417	0.147132	SOX9	ENST00000502762.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr22_-_22292934_22292967	0.146495	SOX9	ENST00000538191.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000424647.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F 	ENST00000407142.1|PPM1F|ENSG00000100034.9|protein phosphatase, Mg2+/Mn2+ dependent, 1F
hg19_v2_chr19_+_42254885_42254970	0.145894	SOX9	ENST00000595740.1|CEACAM6|ENSG00000086548.8|carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)
hg19_v2_chr10_-_24770632_24770632	0.145837	SOX9	ENST00000596413.1|AL353583.1|ENSG00000269879.1|AL353583.1
hg19_v2_chr11_-_8190534_8190602	0.145775	SOX9	ENST00000309737.6|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000425599.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000539720.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000531450.1|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000419822.2|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000335425.7|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone 	ENST00000343202.4|RIC3|ENSG00000166405.10|RIC3 acetylcholine receptor chaperone
hg19_v2_chr1_+_180897269_180897295	0.144506	SOX9	ENST00000367587.1|KIAA1614|ENSG00000135835.6|KIAA1614
hg19_v2_chr6_+_72596604_72596727	0.143647	SOX9	ENST00000348717.5|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000517960.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000518273.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000522291.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000521978.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000520567.1|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000264839.7|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr7_-_16685422_16685448	0.142677	SOX9	ENST00000306999.2|ANKMY2|ENSG00000106524.4|ankyrin repeat and MYND domain containing 2
hg19_v2_chr2_-_200323414_200323468	0.142036	SOX9	ENST00000443023.1|SATB2|ENSG00000119042.12|SATB homeobox 2
hg19_v2_chr16_-_89556942_89557020	0.141758	SOX9	ENST00000301030.4|ANKRD11|ENSG00000167522.10|ankyrin repeat domain 11
hg19_v2_chr13_+_98795664_98795734	0.14163	SOX9	ENST00000376581.5|FARP1|ENSG00000152767.11|FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
hg19_v2_chr9_+_116263778_116263793	0.139826	SOX9	ENST00000394646.3|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr12_+_27623565_27623565	0.138791	SOX9	ENST00000535986.1|SMCO2|ENSG00000165935.5|single-pass membrane protein with coiled-coil domains 2
hg19_v2_chr5_-_39425222_39425283	0.138689	SOX9	ENST00000320816.6|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr19_-_58514129_58514205	0.138065	SOX9	ENST00000552184.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000546715.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000536132.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547828.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000547121.1|ZNF606|ENSG00000166704.7|zinc finger protein 606 	ENST00000551380.1|ZNF606|ENSG00000166704.7|zinc finger protein 606
hg19_v2_chr14_-_73493784_73493822	0.137961	SOX9	ENST00000553891.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chr1_-_153643442_153643524	0.137943	SOX9	ENST00000368681.1|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2 	ENST00000361891.4|ILF2|ENSG00000143621.12|interleukin enhancer binding factor 2
hg19_v2_chr5_+_170288856_170288920	0.137718	SOX9	ENST00000523189.1|RANBP17|ENSG00000204764.8|RAN binding protein 17
hg19_v2_chr7_-_14942944_14942997	0.136801	SOX9	ENST00000403951.2|DGKB|ENSG00000136267.9|diacylglycerol kinase, beta 90kDa
hg19_v2_chr2_+_74425689_74425749	0.136305	SOX9	ENST00000394053.2|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409804.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000264090.4|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000394050.3|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 	ENST00000409601.1|MTHFD2|ENSG00000065911.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
hg19_v2_chr16_+_524850_524883	0.136003	SOX9	ENST00000450428.1|RAB11FIP3|ENSG00000090565.11|RAB11 family interacting protein 3 (class II) 	ENST00000452814.1|RAB11FIP3|ENSG00000090565.11|RAB11 family interacting protein 3 (class II)
hg19_v2_chr17_+_27573875_27573881	0.133974	SOX9	ENST00000225387.3|CRYBA1|ENSG00000108255.3|crystallin, beta A1
hg19_v2_chrX_+_46306714_46306741	0.13345	SOX9	ENST00000298190.6|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000377919.2|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000476762.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4 	ENST00000478600.1|KRBOX4|ENSG00000147121.11|KRAB box domain containing 4
hg19_v2_chr8_-_70745575_70745625	0.133302	SOX9	ENST00000524945.1|SLCO5A1|ENSG00000137571.6|solute carrier organic anion transporter family, member 5A1
hg19_v2_chr17_-_4871085_4871167	0.133047	SOX9	ENST00000575142.1|SPAG7|ENSG00000091640.3|sperm associated antigen 7 	ENST00000206020.3|SPAG7|ENSG00000091640.3|sperm associated antigen 7
hg19_v2_chr9_+_35829208_35829308	0.132373	SOX9	ENST00000439587.2|TMEM8B|ENSG00000137103.12|transmembrane protein 8B 	ENST00000377991.4|TMEM8B|ENSG00000137103.12|transmembrane protein 8B
hg19_v2_chr2_-_86422523_86422595	0.132127	SOX9	ENST00000442664.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000409051.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial 	ENST00000449247.2|IMMT|ENSG00000132305.16|inner membrane protein, mitochondrial
hg19_v2_chr8_+_26435359_26435426	0.1318	SOX9	ENST00000311151.5|DPYSL2|ENSG00000092964.12|dihydropyrimidinase-like 2
hg19_v2_chr17_+_67498295_67498333	0.130368	SOX9	ENST00000589295.1|MAP2K6|ENSG00000108984.9|mitogen-activated protein kinase kinase 6
hg19_v2_chr12_-_11508520_11508686	0.130331	SOX9	ENST00000545626.1|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1 	ENST00000500254.2|PRB1|ENSG00000251655.2|proline-rich protein BstNI subfamily 1
hg19_v2_chr3_+_9439400_9439414	0.127942	SOX9	ENST00000450326.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402198.1|SETD5|ENSG00000168137.11|SET domain containing 5 	ENST00000402466.1|SETD5|ENSG00000168137.11|SET domain containing 5
hg19_v2_chr17_-_57232596_57232630	0.127204	SOX9	ENST00000581068.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000330137.7|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr7_-_99699538_99699563	0.1271	SOX9	ENST00000343023.6|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7 	ENST00000303887.5|MCM7|ENSG00000166508.13|minichromosome maintenance complex component 7
hg19_v2_chrX_-_53711064_53711132	0.126901	SOX9	ENST00000342160.3|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 	ENST00000446750.1|HUWE1|ENSG00000086758.11|HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase
hg19_v2_chr12_+_54674482_54674564	0.126192	SOX9	ENST00000547708.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000340913.6|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000551702.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000330752.8|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1 	ENST00000547276.1|HNRNPA1|ENSG00000135486.13|heterogeneous nuclear ribonucleoprotein A1
hg19_v2_chr19_+_10765699_10765728	0.124883	SOX9	ENST00000590009.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr1_+_150039369_150039444	0.1245	SOX9	ENST00000369130.3|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae) 	ENST00000369128.5|VPS45|ENSG00000136631.8|vacuolar protein sorting 45 homolog (S. cerevisiae)
hg19_v2_chr1_+_155579979_155580032	0.124242	SOX9	ENST00000452804.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000538143.1|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000245564.2|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator 	ENST00000368341.4|MSTO1|ENSG00000125459.10|misato 1, mitochondrial distribution and morphology regulator
hg19_v2_chr5_+_69321074_69321200	0.12289	SOX9	ENST00000380751.5|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000380750.3|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000503931.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric) 	ENST00000506542.1|SERF1B|ENSG00000205572.5|small EDRK-rich factor 1B (centromeric)
hg19_v2_chr5_+_60241020_60241162	0.122314	SOX9	ENST00000511107.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 	ENST00000502658.1|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr11_-_71752838_71752915	0.121431	SOX9	ENST00000537930.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr19_+_30719410_30719461	0.119723	SOX9	ENST00000585628.1|ZNF536|ENSG00000198597.4|zinc finger protein 536 	ENST00000591488.1|ZNF536|ENSG00000198597.4|zinc finger protein 536
hg19_v2_chr10_+_74033672_74033688	0.119378	SOX9	ENST00000307365.3|DDIT4|ENSG00000168209.4|DNA-damage-inducible transcript 4
hg19_v2_chr4_+_175205038_175205094	0.119378	SOX9	ENST00000457424.2|CEP44|ENSG00000164118.8|centrosomal protein 44kDa 	ENST00000514712.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr5_+_140248518_140248689	0.118848	SOX9	ENST00000398640.2|PCDHA11|ENSG00000249158.2|protocadherin alpha 11
hg19_v2_chr11_-_6677018_6677085	0.117988	SOX9	ENST00000299441.3|DCHS1|ENSG00000166341.6|dachsous cadherin-related 1
hg19_v2_chr12_+_53845879_53846152	0.117824	SOX9	ENST00000359282.5|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000603815.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000447282.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000437231.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000549863.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000359462.5|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000550520.2|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000546463.1|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2 	ENST00000552296.2|PCBP2|ENSG00000197111.11|poly(rC) binding protein 2
hg19_v2_chr12_+_49621658_49621709	0.117767	SOX9	ENST00000541364.1|TUBA1C|ENSG00000167553.10|tubulin, alpha 1c
hg19_v2_chr8_-_23563922_23564111	0.115812	SOX9	ENST00000418222.1|NKX2-6|ENSG00000180053.6|NK2 homeobox 6 	ENST00000325017.3|NKX2-6|ENSG00000180053.6|NK2 homeobox 6
hg19_v2_chr1_+_161228517_161228542	0.115157	SOX9	ENST00000504449.1|PCP4L1|ENSG00000248485.1|Purkinje cell protein 4 like 1
hg19_v2_chr12_+_49761147_49761167	0.114491	SOX9	ENST00000549298.1|SPATS2|ENSG00000123352.13|spermatogenesis associated, serine-rich 2
hg19_v2_chr5_+_94890840_94890871	0.114309	SOX9	ENST00000504763.1|ARSK|ENSG00000164291.12|arylsulfatase family, member K
hg19_v2_chr19_+_45504688_45504782	0.11382	SOX9	ENST00000221452.8|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000540120.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B 	ENST00000505236.1|RELB|ENSG00000104856.9|v-rel avian reticuloendotheliosis viral oncogene homolog B
hg19_v2_chr20_-_40247002_40247075	0.113366	SOX9	ENST00000373222.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr17_+_59489112_59489112	0.113331	SOX9	ENST00000335108.2|C17orf82|ENSG00000187013.2|chromosome 17 open reading frame 82
hg19_v2_chr5_+_140213815_140213969	0.112655	SOX9	ENST00000525929.1|PCDHA7|ENSG00000204963.4|protocadherin alpha 7 	ENST00000378125.3|PCDHA7|ENSG00000204963.4|protocadherin alpha 7
hg19_v2_chr6_+_112408768_112408894	0.112433	SOX9	ENST00000368656.2|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B 	ENST00000604268.1|FAM229B|ENSG00000203778.3|family with sequence similarity 229, member B
hg19_v2_chr1_-_243418650_243418664	0.111634	SOX9	ENST00000522995.1|CEP170|ENSG00000143702.11|centrosomal protein 170kDa
hg19_v2_chr10_-_62060232_62060246	0.110152	SOX9	ENST00000503925.1|ANK3|ENSG00000151150.16|ankyrin 3, node of Ranvier (ankyrin G)
hg19_v2_chr2_-_206950996_206951032	0.109259	SOX9	ENST00000414320.1|INO80D|ENSG00000114933.11|INO80 complex subunit D
hg19_v2_chr7_-_150924121_150924332	0.109196	SOX9	ENST00000441774.1|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000222388.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2 	ENST00000287844.2|ABCF2|ENSG00000033050.3|ATP-binding cassette, sub-family F (GCN20), member 2
hg19_v2_chr10_-_128359074_128359083	0.109122	SOX9	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr7_+_28452130_28452154	0.1073	SOX9	ENST00000357727.2|CREB5|ENSG00000146592.12|cAMP responsive element binding protein 5
hg19_v2_chr18_-_55288973_55289085	0.106974	SOX9	ENST00000423481.2|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000587194.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000591599.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase 	ENST00000588661.1|NARS|ENSG00000134440.7|asparaginyl-tRNA synthetase
hg19_v2_chr2_-_114647327_114647351	0.106469	SOX9	ENST00000602760.1|RP11-141B14.1|ENSG00000270019.1|RP11-141B14.1
hg19_v2_chr3_-_16306432_16306491	0.106217	SOX9	ENST00000383775.4|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3 	ENST00000488423.1|DPH3|ENSG00000154813.5|diphthamide biosynthesis 3
hg19_v2_chr18_-_13915530_13915540	0.105773	SOX9	ENST00000327606.3|MC2R|ENSG00000185231.4|melanocortin 2 receptor (adrenocorticotropic hormone)
hg19_v2_chr12_-_25055177_25055258	0.105504	SOX9	ENST00000538118.1|BCAT1|ENSG00000060982.10|branched chain amino-acid transaminase 1, cytosolic
hg19_v2_chr14_-_55878538_55878576	0.104132	SOX9	ENST00000247178.5|ATG14|ENSG00000126775.8|autophagy related 14
hg19_v2_chr15_+_91416092_91416120	0.104061	SOX9	ENST00000559353.1|FURIN|ENSG00000140564.6|furin (paired basic amino acid cleaving enzyme)
hg19_v2_chr11_-_71753188_71753200	0.103804	SOX9	ENST00000543009.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr21_+_34398153_34398250	0.103749	SOX9	ENST00000382357.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000430860.1|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2 	ENST00000333337.3|OLIG2|ENSG00000205927.4|oligodendrocyte lineage transcription factor 2
hg19_v2_chr6_-_41040195_41040263	0.101731	SOX9	ENST00000463088.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000469104.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1 	ENST00000486443.1|OARD1|ENSG00000124596.12|O-acyl-ADP-ribose deacylase 1
hg19_v2_chr12_-_81763184_81763202	0.101104	SOX9	ENST00000548670.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000541570.2|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000553058.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr19_+_7895074_7895119	0.0998851	SOX9	ENST00000270530.4|EVI5L|ENSG00000142459.4|ecotropic viral integration site 5-like
hg19_v2_chr5_+_138677515_138677581	0.099798	SOX9	ENST00000265192.4|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2 	ENST00000511706.1|PAIP2|ENSG00000120727.8|poly(A) binding protein interacting protein 2
hg19_v2_chr5_+_86563636_86563712	0.09905	SOX9	ENST00000274376.6|RASA1|ENSG00000145715.10|RAS p21 protein activator (GTPase activating protein) 1
hg19_v2_chr5_+_138852090_138852108	0.0986132	SOX9	ENST00000593907.1|AC138517.1|ENSG00000269071.1|Uncharacterized protein
hg19_v2_chr1_-_201123546_201123581	0.0979578	SOX9	ENST00000435310.1|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000485839.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367330.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr20_+_30795664_30795743	0.0979022	SOX9	ENST00000375749.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000375730.3|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1 	ENST00000539210.1|POFUT1|ENSG00000101346.7|protein O-fucosyltransferase 1
hg19_v2_chr12_-_49582978_49583107	0.0976748	SOX9	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr6_+_131571535_131571595	0.0974908	SOX9	ENST00000474850.2|AKAP7|ENSG00000118507.11|A kinase (PRKA) anchor protein 7
hg19_v2_chr5_-_39425290_39425336	0.0961339	SOX9	ENST00000545653.1|DAB2|ENSG00000153071.10|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)
hg19_v2_chr14_+_39644387_39644417	0.0958058	SOX9	ENST00000553331.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein 	ENST00000216832.4|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr6_+_22146851_22146883	0.095736	SOX9	ENST00000606197.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr20_-_30310336_30310400	0.0932428	SOX9	ENST00000434194.1|BCL2L1|ENSG00000171552.8|BCL2-like 1 	ENST00000376062.2|BCL2L1|ENSG00000171552.8|BCL2-like 1
hg19_v2_chr7_+_44788146_44788181	0.0927545	SOX9	ENST00000413916.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr3_+_35680339_35680437	0.0924444	SOX9	ENST00000450234.1|ARPP21|ENSG00000172995.12|cAMP-regulated phosphoprotein, 21kDa
hg19_v2_chr19_+_13906250_13906274	0.0924061	SOX9	ENST00000254323.2|ZSWIM4|ENSG00000132003.5|zinc finger, SWIM-type containing 4
hg19_v2_chr22_+_38142235_38142297	0.0922762	SOX9	ENST00000407319.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000403663.2|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein 	ENST00000428075.1|TRIOBP|ENSG00000100106.15|TRIO and F-actin binding protein
hg19_v2_chr14_-_31495569_31495636	0.0921797	SOX9	ENST00000357479.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3 	ENST00000355683.5|STRN3|ENSG00000196792.7|striatin, calmodulin binding protein 3
hg19_v2_chr1_+_66458072_66458109	0.0916308	SOX9	ENST00000423207.2|PDE4B|ENSG00000184588.13|phosphodiesterase 4B, cAMP-specific
hg19_v2_chr17_-_7760779_7760896	0.0901923	SOX9	ENST00000335155.5|LSMD1|ENSG00000183011.9|LSM domain containing 1 	ENST00000575071.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr14_-_69619823_69619879	0.0896718	SOX9	ENST00000341516.5|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr16_-_73093597_73093597	0.0892874	SOX9	ENST00000397992.5|ZFHX3|ENSG00000140836.10|zinc finger homeobox 3
hg19_v2_chr20_-_40247133_40247194	0.0886209	SOX9	ENST00000373233.3|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6 	ENST00000309279.7|CHD6|ENSG00000124177.10|chromodomain helicase DNA binding protein 6
hg19_v2_chr16_+_75032901_75032974	0.0883016	SOX9	ENST00000335325.4|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase 	ENST00000320619.6|ZNRF1|ENSG00000186187.7|zinc and ring finger 1, E3 ubiquitin protein ligase
hg19_v2_chr19_-_45004556_45004581	0.0880155	SOX9	ENST00000587047.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000391956.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000221327.4|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000586637.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000591064.1|ZNF180|ENSG00000167384.6|zinc finger protein 180 	ENST00000592529.1|ZNF180|ENSG00000167384.6|zinc finger protein 180
hg19_v2_chr19_+_55851221_55851285	0.0873832	SOX9	ENST00000255613.3|SUV420H2|ENSG00000133247.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENST00000539076.1|AC020922.1|ENSG00000267531.1|Uncharacterized protein
hg19_v2_chr17_+_46018872_46019006	0.0851721	SOX9	ENST00000583599.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000434554.2|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000225573.4|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000544840.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase 	ENST00000534893.1|PNPO|ENSG00000108439.5|pyridoxamine 5'-phosphate oxidase
hg19_v2_chr19_+_10765003_10765058	0.0844245	SOX9	ENST00000407004.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589998.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000589600.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr19_+_7694623_7694710	0.0843431	SOX9	ENST00000594797.1|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae) 	ENST00000456958.3|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae) 	ENST00000601406.1|PET100|ENSG00000229833.5|PET100 homolog (S. cerevisiae)
hg19_v2_chr3_+_49058444_49058618	0.0842421	SOX9	ENST00000326925.6|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3 	ENST00000395458.2|NDUFAF3|ENSG00000178057.10|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3
hg19_v2_chr12_+_55886147_55886162	0.0840414	SOX9	ENST00000379662.1|OR6C68|ENSG00000205327.2|olfactory receptor, family 6, subfamily C, member 68 	ENST00000548615.1|OR6C68|ENSG00000205327.2|olfactory receptor, family 6, subfamily C, member 68
hg19_v2_chr6_+_64282447_64282586	0.0829111	SOX9	ENST00000370650.2|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1 	ENST00000578299.1|PTP4A1|ENSG00000112245.6|protein tyrosine phosphatase type IVA, member 1
hg19_v2_chr22_+_19419425_19419425	0.0822211	SOX9	ENST00000333130.3|MRPL40|ENSG00000185608.4|mitochondrial ribosomal protein L40
hg19_v2_chr22_-_32022280_32022297	0.0812774	SOX9	ENST00000442379.1|PISD|ENSG00000241878.5|phosphatidylserine decarboxylase
hg19_v2_chr11_-_33183048_33183077	0.081218	SOX9	ENST00000438862.2|CSTF3|ENSG00000176102.7|cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa
hg19_v2_chr8_-_11660077_11660077	0.0808445	SOX9	ENST00000533405.1|RP11-297N6.4|ENSG00000255046.1|Uncharacterized protein
hg19_v2_chr1_+_248223984_248223984	0.0799224	SOX9	ENST00000359959.3|OR2L3|ENSG00000198128.3|olfactory receptor, family 2, subfamily L, member 3
hg19_v2_chr11_-_111649074_111649123	0.0793442	SOX9	ENST00000534218.1|RP11-108O10.2|ENSG00000254990.1|RP11-108O10.2
hg19_v2_chr3_+_88108381_88108450	0.0790999	SOX9	ENST00000473136.1|RP11-159G9.5|ENSG00000229729.3|Uncharacterized protein
hg19_v2_chr12_-_81763127_81763171	0.078007	SOX9	ENST00000541017.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr11_+_125365110_125365110	0.0776894	SOX9	ENST00000527818.1|AP000708.1|ENSG00000255537.1|AP000708.1
hg19_v2_chr4_+_175205100_175205161	0.0776546	SOX9	ENST00000515299.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr4_-_83350580_83350600	0.0754141	SOX9	ENST00000349655.4|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like 	ENST00000602300.1|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr17_-_57232525_57232584	0.0750972	SOX9	ENST00000583380.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000580541.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000578105.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2 	ENST00000437036.2|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr1_-_198906528_198906573	0.0749545	SOX9	ENST00000432296.1|MIR181A1HG|ENSG00000229989.3|MIR181A1 host gene (non-protein coding)
hg19_v2_chr3_-_88108212_88108223	0.0738649	SOX9	ENST00000482016.1|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr10_-_13390270_13390316	0.0738402	SOX9	ENST00000378614.4|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000545675.1|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1 	ENST00000327347.5|SEPHS1|ENSG00000086475.10|selenophosphate synthetase 1
hg19_v2_chr17_+_18128896_18128983	0.0736201	SOX9	ENST00000316843.4|LLGL1|ENSG00000131899.6|lethal giant larvae homolog 1 (Drosophila)
hg19_v2_chr7_+_99699280_99699335	0.073178	SOX9	ENST00000421755.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit
hg19_v2_chrX_-_106959631_106959775	0.0730011	SOX9	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr2_+_102314161_102314206	0.0729621	SOX9	ENST00000425019.1|MAP4K4|ENSG00000071054.11|mitogen-activated protein kinase kinase kinase kinase 4
hg19_v2_chr15_-_64673665_64673709	0.0707098	SOX9	ENST00000300035.4|KIAA0101|ENSG00000166803.6|KIAA0101
hg19_v2_chr19_+_58790314_58790358	0.0704967	SOX9	ENST00000196548.5|ZNF8|ENSG00000083842.8|Zinc finger protein 8  	ENST00000608843.1|ZNF8|ENSG00000273439.1|zinc finger protein 8
hg19_v2_chr20_+_61448376_61448418	0.0703719	SOX9	ENST00000343916.3|COL9A3|ENSG00000092758.11|collagen, type IX, alpha 3
hg19_v2_chr6_+_30687978_30688141	0.0698029	SOX9	ENST00000327892.8|TUBB|ENSG00000196230.8|tubulin, beta class I 	ENST00000435534.1|TUBB|ENSG00000196230.8|tubulin, beta class I
hg19_v2_chr19_+_10764937_10764998	0.0692426	SOX9	ENST00000449870.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000318511.3|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa 	ENST00000420083.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr9_-_74979420_74979580	0.0687315	SOX9	ENST00000343431.2|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5 	ENST00000376956.3|ZFAND5|ENSG00000107372.8|zinc finger, AN1-type domain 5
hg19_v2_chr9_+_15422702_15422883	0.0684683	SOX9	ENST00000380821.3|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa 	ENST00000421710.1|SNAPC3|ENSG00000164975.11|small nuclear RNA activating complex, polypeptide 3, 50kDa
hg19_v2_chr1_+_144339738_144339738	0.0682481	SOX9	ENST00000538264.1|AL592284.1|ENSG00000231360.2|Protein LOC642441
hg19_v2_chr9_-_139965000_139965040	0.0681845	SOX9	ENST00000409687.3|SAPCD2|ENSG00000186193.7|suppressor APC domain containing 2
hg19_v2_chrX_+_41192595_41192651	0.068073	SOX9	ENST00000399959.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chrX_+_41193407_41193422	0.0678621	SOX9	ENST00000457138.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked 	ENST00000441189.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr3_+_181429704_181429722	0.0669842	SOX9	ENST00000431565.2|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2 	ENST00000325404.1|SOX2|ENSG00000181449.2|SRY (sex determining region Y)-box 2
hg19_v2_chr3_-_88108192_88108203	0.0667634	SOX9	ENST00000309534.6|CGGBP1|ENSG00000163320.6|CGG triplet repeat binding protein 1
hg19_v2_chr5_-_65018834_65018863	0.0667387	SOX9	ENST00000506816.1|SGTB|ENSG00000197860.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
hg19_v2_chr16_-_25026641_25026698	0.0664715	SOX9	ENST00000289968.6|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000303665.5|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000455311.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17 	ENST00000441763.2|ARHGAP17|ENSG00000140750.12|Rho GTPase activating protein 17
hg19_v2_chr1_-_160040038_160040064	0.0661484	SOX9	ENST00000368089.3|KCNJ10|ENSG00000177807.6|potassium inwardly-rectifying channel, subfamily J, member 10
hg19_v2_chr11_-_77531752_77531792	0.0645109	SOX9	ENST00000440064.2|RSF1|ENSG00000048649.9|remodeling and spacing factor 1 	ENST00000528095.1|RSF1|ENSG00000048649.9|remodeling and spacing factor 1
hg19_v2_chr6_-_112408661_112408743	0.0643905	SOX9	ENST00000368662.5|TUBE1|ENSG00000074935.9|tubulin, epsilon 1
hg19_v2_chr9_+_116263639_116263707	0.0641054	SOX9	ENST00000343817.5|RGS3|ENSG00000138835.18|regulator of G-protein signaling 3
hg19_v2_chr19_+_10765614_10765687	0.0619692	SOX9	ENST00000589283.1|ILF3|ENSG00000129351.13|interleukin enhancer binding factor 3, 90kDa
hg19_v2_chr14_-_73493825_73493920	0.0617358	SOX9	ENST00000318876.5|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1 	ENST00000556143.1|ZFYVE1|ENSG00000165861.9|zinc finger, FYVE domain containing 1
hg19_v2_chrX_-_135962876_135962896	0.0616092	SOX9	ENST00000431446.3|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000570135.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000320676.7|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked 	ENST00000562646.1|RBMX|ENSG00000147274.10|RNA binding motif protein, X-linked
hg19_v2_chr2_+_217498105_217498129	0.0613161	SOX9	ENST00000233809.4|IGFBP2|ENSG00000115457.5|insulin-like growth factor binding protein 2, 36kDa
hg19_v2_chr15_-_56035177_56035355	0.0608717	SOX9	ENST00000389286.4|PRTG|ENSG00000166450.8|protogenin 	ENST00000561292.1|PRTG|ENSG00000166450.8|protogenin
hg19_v2_chr9_-_130517522_130517583	0.060095	SOX9	ENST00000373274.3|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C 	ENST00000420366.1|SH2D3C|ENSG00000095370.15|SH2 domain containing 3C
hg19_v2_chr12_+_70760056_70760085	0.0595071	SOX9	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr10_+_124895472_124895508	0.0592718	SOX9	ENST00000357878.5|HMX3|ENSG00000188620.9|H6 family homeobox 3
hg19_v2_chr3_+_111718173_111718195	0.0589866	SOX9	ENST00000494932.1|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr1_-_173991434_173991556	0.0587645	SOX9	ENST00000367696.2|RC3H1|ENSG00000135870.7|ring finger and CCCH-type domains 1
hg19_v2_chr20_-_45985172_45985240	0.0580831	SOX9	ENST00000536340.1|ZMYND8|ENSG00000101040.15|zinc finger, MYND-type containing 8
hg19_v2_chrX_-_19817869_19817922	0.0579805	SOX9	ENST00000379698.4|SH3KBP1|ENSG00000147010.13|SH3-domain kinase binding protein 1
hg19_v2_chr4_-_83351005_83351019	0.0575589	SOX9	ENST00000295470.5|HNRNPDL|ENSG00000152795.13|heterogeneous nuclear ribonucleoprotein D-like
hg19_v2_chr4_+_175204818_175204833	0.057377	SOX9	ENST00000503780.1|CEP44|ENSG00000164118.8|centrosomal protein 44kDa
hg19_v2_chr18_+_42260861_42260882	0.0565593	SOX9	ENST00000282030.5|SETBP1|ENSG00000152217.12|SET binding protein 1
hg19_v2_chr13_-_28545276_28545276	0.056152	SOX9	ENST00000381020.7|CDX2|ENSG00000165556.9|caudal type homeobox 2
hg19_v2_chr1_-_19426149_19426221	0.0549624	SOX9	ENST00000429347.2|UBR4|ENSG00000127481.10|ubiquitin protein ligase E3 component n-recognin 4
hg19_v2_chr8_+_61429416_61429502	0.0549423	SOX9	ENST00000262646.7|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family 	ENST00000531289.1|RAB2A|ENSG00000104388.10|RAB2A, member RAS oncogene family
hg19_v2_chr5_+_60240943_60241011	0.0542908	SOX9	ENST00000296597.5|NDUFAF2|ENSG00000164182.6|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2
hg19_v2_chr12_-_49582837_49582875	0.0538109	SOX9	ENST00000547939.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000546918.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a 	ENST00000552924.1|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr17_+_35851570_35851667	0.0527275	SOX9	ENST00000394386.1|DUSP14|ENSG00000161326.8|dual specificity phosphatase 14
hg19_v2_chr3_+_111718036_111718047	0.0521873	SOX9	ENST00000455401.2|TAGLN3|ENSG00000144834.8|transgelin 3
hg19_v2_chr10_+_121578211_121578248	0.0519543	SOX9	ENST00000369080.3|INPP5F|ENSG00000198825.7|inositol polyphosphate-5-phosphatase F
hg19_v2_chr9_+_35538616_35538650	0.0517875	SOX9	ENST00000455600.1|RUSC2|ENSG00000198853.7|RUN and SH3 domain containing 2
hg19_v2_chr12_-_2966193_2966213	0.0512317	SOX9	ENST00000382678.3|AC005841.1|ENSG00000206044.3|Uncharacterized protein ENSP00000372125
hg19_v2_chr6_-_86353510_86353595	0.0512105	SOX9	ENST00000444272.1|SYNCRIP|ENSG00000135316.13|synaptotagmin binding, cytoplasmic RNA interacting protein
hg19_v2_chr11_-_71752571_71752598	0.0507216	SOX9	ENST00000544238.1|NUMA1|ENSG00000137497.13|nuclear mitotic apparatus protein 1
hg19_v2_chr7_-_75368248_75368265	0.0503874	SOX9	ENST00000434438.2|HIP1|ENSG00000127946.12|huntingtin interacting protein 1 	ENST00000336926.6|HIP1|ENSG00000127946.12|huntingtin interacting protein 1
hg19_v2_chr4_-_76598326_76598346	0.0499404	SOX9	ENST00000503660.1|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr16_-_838329_838397	0.0490974	SOX9	ENST00000563560.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000569601.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565809.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000565377.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000007264.2|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1 	ENST00000567114.1|RPUSD1|ENSG00000007376.3|RNA pseudouridylate synthase domain containing 1
hg19_v2_chr14_-_64761078_64761128	0.0480236	SOX9	ENST00000341099.4|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000556275.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000542956.1|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000353772.3|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000357782.2|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta) 	ENST00000267525.6|ESR2|ENSG00000140009.14|estrogen receptor 2 (ER beta)
hg19_v2_chr17_+_33914460_33914536	0.0478037	SOX9	ENST00000537622.2|AP2B1|ENSG00000006125.12|adaptor-related protein complex 2, beta 1 subunit
hg19_v2_chr14_-_69619291_69619326	0.0470363	SOX9	ENST00000554215.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000556847.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chr1_-_93645818_93645918	0.0470138	SOX9	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr1_+_93645314_93645476	0.0466643	SOX9	ENST00000343253.7|CCDC18|ENSG00000122483.13|coiled-coil domain containing 18
hg19_v2_chr17_-_42441204_42441243	0.0452276	SOX9	ENST00000293443.7|FAM171A2|ENSG00000161682.10|family with sequence similarity 171, member A2
hg19_v2_chr11_+_111808119_111808151	0.0449655	SOX9	ENST00000531396.1|DIXDC1|ENSG00000150764.9|DIX domain containing 1
hg19_v2_chr18_+_34409069_34409203	0.0438288	SOX9	ENST00000543923.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000280020.5|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000435985.2|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000592521.1|KIAA1328|ENSG00000150477.10|KIAA1328 	ENST00000587139.1|KIAA1328|ENSG00000150477.10|KIAA1328
hg19_v2_chr1_+_24286287_24286326	0.0432896	SOX9	ENST00000334351.7|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2 	ENST00000374468.1|PNRC2|ENSG00000189266.7|proline-rich nuclear receptor coactivator 2
hg19_v2_chr6_-_15586238_15586256	0.0426592	SOX9	ENST00000462989.2|DTNBP1|ENSG00000047579.15|dystrobrevin binding protein 1
hg19_v2_chr14_+_102276132_102276178	0.0419321	SOX9	ENST00000350249.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557621.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556946.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr6_+_27114861_27114896	0.041839	SOX9	ENST00000377459.1|HIST1H2AH|ENSG00000184825.4|histone cluster 1, H2ah
hg19_v2_chr7_+_99699179_99699214	0.0413279	SOX9	ENST00000438383.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000429084.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000359593.4|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit 	ENST00000439416.1|AP4M1|ENSG00000221838.5|adaptor-related protein complex 4, mu 1 subunit
hg19_v2_chr6_-_108278456_108278544	0.0412836	SOX9	ENST00000429168.1|SEC63|ENSG00000025796.9|SEC63 homolog (S. cerevisiae)
hg19_v2_chr14_+_39644425_39644470	0.0400648	SOX9	ENST00000556530.1|PNN|ENSG00000100941.4|pinin, desmosome associated protein
hg19_v2_chr3_-_124839648_124839709	0.0400505	SOX9	ENST00000430155.2|SLC12A8|ENSG00000221955.6|solute carrier family 12, member 8
hg19_v2_chr17_+_36861735_36861795	0.0393528	SOX9	ENST00000378137.5|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 	ENST00000325718.7|MLLT6|ENSG00000108292.12|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
hg19_v2_chr19_-_44124019_44124030	0.038544	SOX9	ENST00000300811.3|ZNF428|ENSG00000131116.7|zinc finger protein 428
hg19_v2_chr17_-_7761256_7761397	0.0385163	SOX9	ENST00000575208.1|LSMD1|ENSG00000183011.9|LSM domain containing 1
hg19_v2_chr15_+_74911430_74911484	0.038367	SOX9	ENST00000562670.1|CLK3|ENSG00000179335.14|CDC-like kinase 3 	ENST00000564096.1|CLK3|ENSG00000179335.14|CDC-like kinase 3
hg19_v2_chr17_-_62308087_62308116	0.0376194	SOX9	ENST00000583097.1|TEX2|ENSG00000136478.3|testis expressed 2
hg19_v2_chr16_-_27561209_27561244	0.0375476	SOX9	ENST00000356183.4|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa 	ENST00000561623.1|GTF3C1|ENSG00000077235.13|general transcription factor IIIC, polypeptide 1, alpha 220kDa
hg19_v2_chr1_-_201123586_201123637	0.0374776	SOX9	ENST00000414605.2|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367334.5|TMEM9|ENSG00000116857.12|transmembrane protein 9 	ENST00000367332.1|TMEM9|ENSG00000116857.12|transmembrane protein 9
hg19_v2_chr2_-_111230393_111230393	0.037101	SOX9	ENST00000447537.2|LIMS3L|ENSG00000257207.4|LIM and senescent cell antigen-like-containing domain protein 3; Uncharacterized protein; cDNA FLJ59124, highly similar to Particularly interesting newCys-His protein; cDNA, FLJ79109, highly similar to Particularly interesting newCys-His protein  	ENST00000413601.2|LIMS3L|ENSG00000256671.5|LIM and senescent cell antigen-like domains 3-like
hg19_v2_chr11_+_64949899_64949941	0.0360586	SOX9	ENST00000531068.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527699.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000533909.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit 	ENST00000527323.1|CAPN1|ENSG00000014216.11|calpain 1, (mu/I) large subunit
hg19_v2_chr22_+_35796056_35796090	0.035981	SOX9	ENST00000216122.4|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr15_+_54903673_54903673	0.0352288	SOX9	ENST00000560537.1|UNC13C|ENSG00000137766.12|unc-13 homolog C (C. elegans)
hg19_v2_chr19_-_28957557_28957600	0.0348322	SOX9	ENST00000585697.1|AC005307.3|ENSG00000267243.1|AC005307.3	ENST00000591920.1|AC005307.3|ENSG00000267243.1|AC005307.3
hg19_v2_chr17_-_38210644_38210675	0.0343075	SOX9	ENST00000394128.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000394127.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000356271.3|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000535071.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580885.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000543759.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000537674.2|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000580517.1|MED24|ENSG00000008838.13|mediator complex subunit 24 	ENST00000578161.1|MED24|ENSG00000008838.13|mediator complex subunit 24
hg19_v2_chrX_-_73834449_73834481	0.0335422	SOX9	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr3_-_8686479_8686486	0.0319646	SOX9	ENST00000544814.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans) 	ENST00000427408.1|SSUH2|ENSG00000125046.10|ssu-2 homolog (C. elegans)
hg19_v2_chr14_+_102276192_102276208	0.0301294	SOX9	ENST00000557714.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr13_-_31040060_31040102	0.0298411	SOX9	ENST00000326004.4|HMGB1|ENSG00000189403.10|high mobility group box 1 	ENST00000341423.5|HMGB1|ENSG00000189403.10|high mobility group box 1
hg19_v2_chr12_+_69633372_69633396	0.0297256	SOX9	ENST00000456847.3|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa 	ENST00000266679.8|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr3_-_48754599_48754711	0.0297004	SOX9	ENST00000413654.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000454335.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000440424.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449610.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443964.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000417896.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000413298.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000449563.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000443853.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000437427.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000446860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000412850.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000424035.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000340879.4|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000431721.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000434860.1|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000328631.5|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2 	ENST00000432678.2|IP6K2|ENSG00000068745.10|inositol hexakisphosphate kinase 2
hg19_v2_chr12_+_69633407_69633422	0.0293378	SOX9	ENST00000551516.1|CPSF6|ENSG00000111605.12|cleavage and polyadenylation specific factor 6, 68kDa
hg19_v2_chr9_-_35828576_35828734	0.0290639	SOX9	ENST00000377984.2|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B 	ENST00000423537.2|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B 	ENST00000472182.1|FAM221B|ENSG00000204930.5|family with sequence similarity 221, member B
hg19_v2_chr1_-_154164534_154164687	0.029044	SOX9	ENST00000271850.7|TPM3|ENSG00000143549.15|tropomyosin 3 	ENST00000368530.2|TPM3|ENSG00000143549.15|tropomyosin 3
hg19_v2_chr14_-_69619689_69619757	0.0283609	SOX9	ENST00000389997.6|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000557386.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5 	ENST00000554681.1|DCAF5|ENSG00000139990.13|DDB1 and CUL4 associated factor 5
hg19_v2_chrX_+_129473859_129473904	0.027233	SOX9	ENST00000424447.1|SLC25A14|ENSG00000102078.11|solute carrier family 25 (mitochondrial carrier, brain), member 14
hg19_v2_chr4_+_78079450_78079563	0.0263777	SOX9	ENST00000395640.1|CCNG2|ENSG00000138764.9|cyclin G2 	ENST00000512918.1|CCNG2|ENSG00000138764.9|cyclin G2
hg19_v2_chr12_+_9066472_9066492	0.0259398	SOX9	ENST00000538657.1|PHC1|ENSG00000111752.6|polyhomeotic homolog 1 (Drosophila)
hg19_v2_chr17_-_39041479_39041501	0.023962	SOX9	ENST00000167588.3|KRT20|ENSG00000171431.3|keratin 20
hg19_v2_chrX_-_16888448_16888537	0.0239334	SOX9	ENST00000468092.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000404022.1|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7 	ENST00000380087.2|RBBP7|ENSG00000102054.13|retinoblastoma binding protein 7
hg19_v2_chr11_-_125365435_125365561	0.0236358	SOX9	ENST00000524435.1|FEZ1|ENSG00000149557.8|fasciculation and elongation protein zeta 1 (zygin I)
hg19_v2_chr7_+_44788430_44788530	0.0232341	SOX9	ENST00000457123.1|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2 	ENST00000309315.4|ZMIZ2|ENSG00000122515.10|zinc finger, MIZ-type containing 2
hg19_v2_chr22_+_35796108_35796172	0.0213517	SOX9	ENST00000382011.5|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5 	ENST00000416905.1|MCM5|ENSG00000100297.11|minichromosome maintenance complex component 5
hg19_v2_chr18_-_34409116_34409158	0.0212667	SOX9	ENST00000334295.4|TPGS2|ENSG00000134779.10|tubulin polyglutamylase complex subunit 2
hg19_v2_chr2_-_160568918_160568979	0.0209392	SOX9	ENST00000453016.1|AC009961.3|ENSG00000226266.2|AC009961.3	ENST00000607836.1|AC009961.3|ENSG00000226266.2|AC009961.3
hg19_v2_chr3_+_16306837_16306973	0.0207479	SOX9	ENST00000606098.1|OXNAD1|ENSG00000154814.9|oxidoreductase NAD-binding domain containing 1
hg19_v2_chr13_-_84456527_84456541	0.0196325	SOX9	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr12_-_118797475_118797527	0.018849	SOX9	ENST00000541786.1|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000419821.2|TAOK3|ENSG00000135090.9|TAO kinase 3 	ENST00000541878.1|TAOK3|ENSG00000135090.9|TAO kinase 3
hg19_v2_chr19_-_44439387_44439419	0.0168034	SOX9	ENST00000269973.5|ZNF45|ENSG00000124459.7|zinc finger protein 45
hg19_v2_chr1_-_246580705_246580737	0.0160551	SOX9	ENST00000541742.1|SMYD3|ENSG00000185420.14|SET and MYND domain containing 3
hg19_v2_chr1_+_26737253_26737269	0.0158893	SOX9	ENST00000326279.6|LIN28A|ENSG00000131914.6|lin-28 homolog A (C. elegans)
hg19_v2_chr2_+_172949468_172949522	0.0128014	SOX9	ENST00000361609.4|DLX1|ENSG00000144355.10|distal-less homeobox 1 	ENST00000469444.2|DLX1|ENSG00000144355.10|distal-less homeobox 1
hg19_v2_chr9_-_139760717_139760728	0.0125156	SOX9	ENST00000371648.4|EDF1|ENSG00000107223.8|endothelial differentiation-related factor 1
hg19_v2_chr14_+_55518349_55518423	0.0100632	SOX9	ENST00000395468.4|MAPK1IP1L|ENSG00000168175.10|mitogen-activated protein kinase 1 interacting protein 1-like
hg19_v2_chr4_-_76598296_76598318	0.00997592	SOX9	ENST00000395719.3|G3BP2|ENSG00000138757.10|GTPase activating protein (SH3 domain) binding protein 2
hg19_v2_chr2_+_46926326_46926452	0.009954	SOX9	ENST00000394861.2|SOCS5|ENSG00000171150.7|suppressor of cytokine signaling 5
hg19_v2_chr19_-_8070474_8070564	0.00988391	SOX9	ENST00000407627.2|ELAVL1|ENSG00000066044.9|ELAV like RNA binding protein 1 	ENST00000593807.1|ELAVL1|ENSG00000066044.9|ELAV like RNA binding protein 1
hg19_v2_chr1_-_184723701_184723760	0.00882559	SOX9	ENST00000367512.3|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chrX_-_85302531_85302570	0.00782692	SOX9	ENST00000537751.1|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000358786.4|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1) 	ENST00000357749.2|CHM|ENSG00000188419.9|choroideremia (Rab escort protein 1)
hg19_v2_chr9_+_4792869_4792902	0.00715016	SOX9	ENST00000381750.4|RCL1|ENSG00000120158.7|RNA terminal phosphate cyclase-like 1
hg19_v2_chr12_+_25055243_25055243	0.00665144	SOX9	ENST00000599478.1|AC026310.1|ENSG00000268865.1|Protein 101060047
hg19_v2_chr11_+_110225855_110226016	0.0063964	SOX9	ENST00000526605.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1	ENST00000526703.1|RP11-347E10.1|ENSG00000254416.1|RP11-347E10.1
hg19_v2_chr18_+_72163536_72163646	0.00564454	SOX9	ENST00000579847.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000583203.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000581513.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000577600.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000579583.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family) 	ENST00000584613.1|CNDP2|ENSG00000133313.10|CNDP dipeptidase 2 (metallopeptidase M20 family)
hg19_v2_chr7_+_141463897_141463897	0.00556407	SOX9	ENST00000247879.2|TAS2R3|ENSG00000127362.2|taste receptor, type 2, member 3
hg19_v2_chr1_+_165797024_165797069	0.00455454	SOX9	ENST00000372212.4|UCK2|ENSG00000143179.8|uridine-cytidine kinase 2
hg19_v2_chr1_-_157014865_157014865	0.00412083	SOX9	ENST00000361409.2|ARHGEF11|ENSG00000132694.14|Rho guanine nucleotide exchange factor (GEF) 11
hg19_v2_chr14_+_32546145_32546239	0.00351462	SOX9	ENST00000556611.1|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5 	ENST00000539826.2|ARHGAP5|ENSG00000100852.8|Rho GTPase activating protein 5
hg19_v2_chr5_+_65222500_65222601	0.00163628	SOX9	ENST00000511297.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein 	ENST00000506030.1|ERBB2IP|ENSG00000112851.10|erbb2 interacting protein
hg19_v2_chr15_+_85144217_85144281	0.00155359	SOX9	ENST00000540936.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000448803.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546275.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000546148.1|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000442073.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000334141.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000358472.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000502939.2|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000379358.3|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2 	ENST00000327179.6|ZSCAN2|ENSG00000176371.9|zinc finger and SCAN domain containing 2
hg19_v2_chrX_-_117107542_117107677	0.000289466	SOX9	ENST00000371878.1|KLHL13|ENSG00000003096.9|kelch-like family member 13
