hg19_v2_chr7_-_27183263_27183287	3.94573	UCACAGU	ENST00000222726.3|HOXA5|ENSG00000106004.4|homeobox A5
hg19_v2_chr6_+_41606176_41606265	3.2162	UCACAGU	ENST00000441667.1|MDFI|ENSG00000112559.9|MyoD family inhibitor 	ENST00000230321.6|MDFI|ENSG00000112559.9|MyoD family inhibitor 	ENST00000373050.4|MDFI|ENSG00000112559.9|MyoD family inhibitor 	ENST00000446650.1|MDFI|ENSG00000112559.9|MyoD family inhibitor 	ENST00000435476.1|MDFI|ENSG00000112559.9|MyoD family inhibitor
hg19_v2_chr1_+_40420802_40420836	2.86087	UCACAGU	ENST00000372811.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000420632.2|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000434861.1|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A 	ENST00000372809.5|MFSD2A|ENSG00000168389.13|major facilitator superfamily domain containing 2A
hg19_v2_chr20_-_14318248_14318264	2.84575	UCACAGU	ENST00000378053.3|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3 	ENST00000341420.4|FLRT3|ENSG00000125848.9|fibronectin leucine rich transmembrane protein 3
hg19_v2_chr8_+_40010989_40011008	2.6833	UCACAGU	ENST00000315792.3|C8orf4|ENSG00000176907.3|chromosome 8 open reading frame 4
hg19_v2_chr1_-_47655686_47655743	2.66144	UCACAGU	ENST00000294338.2|PDZK1IP1|ENSG00000162366.3|PDZK1 interacting protein 1
hg19_v2_chr5_-_115910630_115910657	2.60808	UCACAGU	ENST00000343348.6|SEMA6A|ENSG00000092421.12|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
hg19_v2_chr17_-_46692287_46692317	2.50499	UCACAGU	ENST00000239144.4|HOXB8|ENSG00000120068.5|homeobox B8
hg19_v2_chr11_+_34642656_34642682	2.41071	UCACAGU	ENST00000257831.3|EHF|ENSG00000135373.8|ets homologous factor 	ENST00000450654.2|EHF|ENSG00000135373.8|ets homologous factor
hg19_v2_chr6_-_39197226_39197258	2.40234	UCACAGU	ENST00000359534.3|KCNK5|ENSG00000164626.8|potassium channel, subfamily K, member 5
hg19_v2_chr8_+_120220561_120220650	2.26633	UCACAGU	ENST00000276681.6|MAL2|ENSG00000147676.9|mal, T-cell differentiation protein 2 (gene/pseudogene)
hg19_v2_chr15_+_96873921_96873946	2.21901	UCACAGU	ENST00000394166.3|NR2F2|ENSG00000185551.8|nuclear receptor subfamily 2, group F, member 2
hg19_v2_chr15_+_81071684_81071719	2.19894	UCACAGU	ENST00000220244.3|KIAA1199|ENSG00000103888.11|KIAA1199 	ENST00000394685.3|KIAA1199|ENSG00000103888.11|KIAA1199 	ENST00000356249.5|KIAA1199|ENSG00000103888.11|KIAA1199
hg19_v2_chr6_+_50786414_50786439	2.17488	UCACAGU	ENST00000344788.3|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 	ENST00000393655.3|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta) 	ENST00000263046.4|TFAP2B|ENSG00000008196.8|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
hg19_v2_chr5_+_167718604_167718746	2.1271	UCACAGU	ENST00000265293.4|WWC1|ENSG00000113645.9|WW and C2 domain containing 1
hg19_v2_chr9_+_137533615_137533660	2.01024	UCACAGU	ENST00000371817.3|COL5A1|ENSG00000130635.11|collagen, type V, alpha 1
hg19_v2_chr8_+_76452097_76452126	1.9815	UCACAGU	ENST00000396423.2|HNF4G|ENSG00000164749.7|hepatocyte nuclear factor 4, gamma
hg19_v2_chr15_-_79383102_79383127	1.93993	UCACAGU	ENST00000558480.2|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1 	ENST00000419573.3|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1
hg19_v2_chr8_+_134203273_134203289	1.84345	UCACAGU	ENST00000250160.6|WISP1|ENSG00000104415.9|WNT1 inducible signaling pathway protein 1
hg19_v2_chr7_-_81399438_81399514	1.83732	UCACAGU	ENST00000222390.5|HGF|ENSG00000019991.11|hepatocyte growth factor (hepapoietin A; scatter factor)
hg19_v2_chr15_+_41221536_41221591	1.80127	UCACAGU	ENST00000249749.5|DLL4|ENSG00000128917.5|delta-like 4 (Drosophila)
hg19_v2_chr1_-_95392635_95392834	1.76905	UCACAGU	ENST00000538964.1|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000394202.4|CNN3|ENSG00000117519.11|calponin 3, acidic 	ENST00000370206.4|CNN3|ENSG00000117519.11|calponin 3, acidic
hg19_v2_chr19_-_36391434_36391564	1.73492	UCACAGU	ENST00000396901.1|NFKBID|ENSG00000167604.9|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta 	ENST00000585925.1|NFKBID|ENSG00000167604.9|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta
hg19_v2_chr4_+_55095264_55095390	1.72931	UCACAGU	ENST00000257290.5|PDGFRA|ENSG00000134853.7|platelet-derived growth factor receptor, alpha polypeptide
hg19_v2_chr4_+_85504075_85504132	1.71627	UCACAGU	ENST00000295887.5|CDS1|ENSG00000163624.5|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
hg19_v2_chr1_+_199996702_199996732	1.70671	UCACAGU	ENST00000367362.3|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chr9_+_103790991_103791001	1.6999	UCACAGU	ENST00000374874.3|LPPR1|ENSG00000148123.10|Lipid phosphate phosphatase-related protein type 1
hg19_v2_chr16_-_65155833_65155976	1.69961	UCACAGU	ENST00000566827.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000394156.3|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast) 	ENST00000562998.1|CDH11|ENSG00000140937.9|cadherin 11, type 2, OB-cadherin (osteoblast)
hg19_v2_chr12_+_103981044_103981061	1.69279	UCACAGU	ENST00000388887.2|STAB2|ENSG00000136011.10|stabilin 2
hg19_v2_chr20_+_10199468_10199516	1.65192	UCACAGU	ENST00000254976.2|SNAP25|ENSG00000132639.8|synaptosomal-associated protein, 25kDa 	ENST00000304886.2|SNAP25|ENSG00000132639.8|synaptosomal-associated protein, 25kDa
hg19_v2_chr9_-_136857403_136857461	1.59947	UCACAGU	ENST00000406606.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor 	ENST00000371850.3|VAV2|ENSG00000160293.12|vav 2 guanine nucleotide exchange factor
hg19_v2_chr2_+_232260254_232260274	1.54711	UCACAGU	ENST00000287590.5|B3GNT7|ENSG00000156966.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
hg19_v2_chr10_-_15762124_15762149	1.5259	UCACAGU	ENST00000378076.3|ITGA8|ENSG00000077943.7|integrin, alpha 8
hg19_v2_chr12_-_88974236_88974256	1.49805	UCACAGU	ENST00000228280.5|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000552044.1|KITLG|ENSG00000049130.9|KIT ligand 	ENST00000357116.4|KITLG|ENSG00000049130.9|KIT ligand
hg19_v2_chr18_+_55102917_55102985	1.48996	UCACAGU	ENST00000491143.2|ONECUT2|ENSG00000119547.5|one cut homeobox 2
hg19_v2_chr2_+_43864387_43864472	1.4619	UCACAGU	ENST00000282406.4|PLEKHH2|ENSG00000152527.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
hg19_v2_chr11_+_58939965_58939965	1.44285	UCACAGU	ENST00000227451.3|DTX4|ENSG00000110042.3|deltex homolog 4 (Drosophila)
hg19_v2_chr3_+_139654018_139654039	1.4423	UCACAGU	ENST00000458420.3|CLSTN2|ENSG00000158258.11|calsyntenin 2
hg19_v2_chr7_-_155604967_155605105	1.44109	UCACAGU	ENST00000297261.2|SHH|ENSG00000164690.3|sonic hedgehog
hg19_v2_chr4_+_115519577_115519631	1.43789	UCACAGU	ENST00000310836.6|UGT8|ENSG00000174607.6|UDP glycosyltransferase 8
hg19_v2_chr6_-_119399895_119399915	1.43669	UCACAGU	ENST00000338891.7|FAM184A|ENSG00000111879.14|family with sequence similarity 184, member A
hg19_v2_chr4_+_111397216_111397250	1.43257	UCACAGU	ENST00000265162.5|ENPEP|ENSG00000138792.5|glutamyl aminopeptidase (aminopeptidase A)
hg19_v2_chr22_+_51112800_51112852	1.42102	UCACAGU	ENST00000414786.2|SHANK3|ENSG00000251322.3|SH3 and multiple ankyrin repeat domains 3
hg19_v2_chr4_+_20255123_20255213	1.41822	UCACAGU	ENST00000504154.1|SLIT2|ENSG00000145147.15|slit homolog 2 (Drosophila) 	ENST00000273739.5|SLIT2|ENSG00000145147.15|slit homolog 2 (Drosophila)
hg19_v2_chr2_-_166651191_166651213	1.41305	UCACAGU	ENST00000392701.3|GALNT3|ENSG00000115339.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
hg19_v2_chr7_-_103629963_103630056	1.40697	UCACAGU	ENST00000428762.1|RELN|ENSG00000189056.9|reelin 	ENST00000343529.5|RELN|ENSG00000189056.9|reelin 	ENST00000424685.2|RELN|ENSG00000189056.9|reelin
hg19_v2_chr17_-_8534067_8534088	1.3978	UCACAGU	ENST00000360416.3|MYH10|ENSG00000133026.8|myosin, heavy chain 10, non-muscle 	ENST00000269243.4|MYH10|ENSG00000133026.8|myosin, heavy chain 10, non-muscle
hg19_v2_chr17_+_47572647_47572662	1.3965	UCACAGU	ENST00000172229.3|NGFR|ENSG00000064300.4|nerve growth factor receptor
hg19_v2_chr1_-_200992827_200992867	1.39533	UCACAGU	ENST00000332129.2|KIF21B|ENSG00000116852.10|kinesin family member 21B 	ENST00000422435.2|KIF21B|ENSG00000116852.10|kinesin family member 21B
hg19_v2_chr3_-_32022733_32022809	1.38467	UCACAGU	ENST00000438237.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10 	ENST00000396556.2|OSBPL10|ENSG00000144645.9|oxysterol binding protein-like 10
hg19_v2_chrX_-_54384425_54384495	1.37936	UCACAGU	ENST00000375169.3|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3 	ENST00000354646.2|WNK3|ENSG00000196632.6|WNK lysine deficient protein kinase 3
hg19_v2_chr11_-_88796803_88796827	1.37384	UCACAGU	ENST00000418177.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5 	ENST00000455756.2|GRM5|ENSG00000168959.10|glutamate receptor, metabotropic 5
hg19_v2_chr11_+_121322832_121322912	1.33342	UCACAGU	ENST00000260197.7|SORL1|ENSG00000137642.8|sortilin-related receptor, L(DLR class) A repeats containing
hg19_v2_chr5_-_176981417_176981508	1.32357	UCACAGU	ENST00000514747.1|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B 	ENST00000443375.2|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B 	ENST00000329540.5|FAM193B|ENSG00000146067.11|family with sequence similarity 193, member B
hg19_v2_chr22_-_37823468_37823528	1.32094	UCACAGU	ENST00000402918.2|ELFN2|ENSG00000166897.10|extracellular leucine-rich repeat and fibronectin type III domain containing 2
hg19_v2_chr9_+_116917807_116917840	1.31674	UCACAGU	ENST00000356083.3|COL27A1|ENSG00000196739.10|collagen, type XXVII, alpha 1
hg19_v2_chr5_-_121413974_121413986	1.31161	UCACAGU	ENST00000231004.4|LOX|ENSG00000113083.8|lysyl oxidase
hg19_v2_chr21_+_35445827_35445886	1.30734	UCACAGU	ENST00000608209.1|SLC5A3|ENSG00000272962.1|sodium/myo-inositol cotransporter  	ENST00000381151.3|SLC5A3|ENSG00000198743.5|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3
hg19_v2_chr11_+_130029457_130029457	1.28913	UCACAGU	ENST00000278742.5|ST14|ENSG00000149418.6|suppression of tumorigenicity 14 (colon carcinoma)
hg19_v2_chr9_+_118916082_118916108	1.26613	UCACAGU	ENST00000328252.3|PAPPA|ENSG00000182752.8|pregnancy-associated plasma protein A, pappalysin 1
hg19_v2_chr3_+_36421826_36421844	1.24781	UCACAGU	ENST00000273183.3|STAC|ENSG00000144681.6|SH3 and cysteine rich domain
hg19_v2_chr2_-_27718052_27718127	1.24173	UCACAGU	ENST00000264703.3|FNDC4|ENSG00000115226.5|fibronectin type III domain containing 4
hg19_v2_chr2_+_192542850_192542872	1.241	UCACAGU	ENST00000410026.2|NABP1|ENSG00000173559.8|nucleic acid binding protein 1
hg19_v2_chr1_-_68299130_68299160	1.23689	UCACAGU	ENST00000370982.3|GNG12|ENSG00000172380.5|guanine nucleotide binding protein (G protein), gamma 12
hg19_v2_chr7_-_108096822_108096889	1.23649	UCACAGU	ENST00000379028.3|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000413765.2|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule 	ENST00000379022.4|NRCAM|ENSG00000091129.15|neuronal cell adhesion molecule
hg19_v2_chr8_-_60031762_60031803	1.23379	UCACAGU	ENST00000361421.1|TOX|ENSG00000198846.5|thymocyte selection-associated high mobility group box
hg19_v2_chr20_-_41818373_41818527	1.22836	UCACAGU	ENST00000373187.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000356100.2|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373184.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T 	ENST00000373190.1|PTPRT|ENSG00000196090.8|protein tyrosine phosphatase, receptor type, T
hg19_v2_chr5_+_172068232_172068320	1.21193	UCACAGU	ENST00000520919.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000522853.1|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B 	ENST00000369800.5|NEURL1B|ENSG00000214357.4|neuralized E3 ubiquitin protein ligase 1B
hg19_v2_chr5_+_52285144_52285166	1.20756	UCACAGU	ENST00000296585.5|ITGA2|ENSG00000164171.6|integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)
hg19_v2_chr2_+_46524537_46524553	1.19126	UCACAGU	ENST00000263734.3|EPAS1|ENSG00000116016.9|endothelial PAS domain protein 1
hg19_v2_chr20_+_49348081_49348096	1.18806	UCACAGU	ENST00000371610.2|PARD6B|ENSG00000124171.4|par-6 family cell polarity regulator beta
hg19_v2_chr5_-_57756087_57756087	1.18445	UCACAGU	ENST00000274289.3|PLK2|ENSG00000145632.10|polo-like kinase 2
hg19_v2_chr1_-_57045228_57045242	1.16821	UCACAGU	ENST00000371250.3|PPAP2B|ENSG00000162407.8|phosphatidic acid phosphatase type 2B
hg19_v2_chr5_+_132149017_132149073	1.14738	UCACAGU	ENST00000378693.2|SOWAHA|ENSG00000198944.4|sosondowah ankyrin repeat domain family member A
hg19_v2_chr6_+_19837592_19837621	1.13726	UCACAGU	ENST00000378700.3|ID4|ENSG00000172201.6|inhibitor of DNA binding 4, dominant negative helix-loop-helix protein
hg19_v2_chr21_+_33245548_33245628	1.13233	UCACAGU	ENST00000270112.2|HUNK|ENSG00000142149.4|hormonally up-regulated Neu-associated kinase
hg19_v2_chr1_-_108507631_108507809	1.12475	UCACAGU	ENST00000527011.1|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor 	ENST00000370056.4|VAV3|ENSG00000134215.11|vav 3 guanine nucleotide exchange factor
hg19_v2_chr15_+_80987617_80987720	1.11641	UCACAGU	ENST00000258884.4|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C 	ENST00000558464.1|ABHD17C|ENSG00000136379.7|abhydrolase domain containing 17C
hg19_v2_chr12_+_54422142_54422239	1.10481	UCACAGU	ENST00000243108.4|HOXC6|ENSG00000197757.7|homeobox C6
hg19_v2_chr3_+_32859510_32859546	1.09582	UCACAGU	ENST00000383763.5|TRIM71|ENSG00000206557.5|tripartite motif containing 71, E3 ubiquitin protein ligase
hg19_v2_chr6_+_127439749_127439829	1.08859	UCACAGU	ENST00000356698.4|RSPO3|ENSG00000146374.9|R-spondin 3
hg19_v2_chr15_-_37390482_37390572	1.07827	UCACAGU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr9_-_130742792_130742821	1.07695	UCACAGU	ENST00000373095.1|FAM102A|ENSG00000167106.7|family with sequence similarity 102, member A
hg19_v2_chr15_-_63674218_63674360	1.07416	UCACAGU	ENST00000178638.3|CA12|ENSG00000074410.9|carbonic anhydrase XII
hg19_v2_chr18_+_19749386_19749404	1.05682	UCACAGU	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr10_+_89419370_89419643	1.03933	UCACAGU	ENST00000361175.4|PAPSS2|ENSG00000198682.8|3'-phosphoadenosine 5'-phosphosulfate synthase 2 	ENST00000456849.1|PAPSS2|ENSG00000198682.8|3'-phosphoadenosine 5'-phosphosulfate synthase 2
hg19_v2_chr9_-_38069208_38069267	1.02405	UCACAGU	ENST00000377707.3|SHB|ENSG00000107338.8|Src homology 2 domain containing adaptor protein B 	ENST00000377700.4|SHB|ENSG00000107338.8|Src homology 2 domain containing adaptor protein B
hg19_v2_chr1_+_160370344_160370406	1.02134	UCACAGU	ENST00000368061.2|VANGL2|ENSG00000162738.5|VANGL planar cell polarity protein 2
hg19_v2_chr2_-_165697920_165697963	1.01732	UCACAGU	ENST00000342193.4|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1 	ENST00000375458.2|COBLL1|ENSG00000082438.11|cordon-bleu WH2 repeat protein-like 1
hg19_v2_chr14_+_52118576_52118673	1.01685	UCACAGU	ENST00000395718.2|FRMD6|ENSG00000139926.11|FERM domain containing 6 	ENST00000344768.5|FRMD6|ENSG00000139926.11|FERM domain containing 6
hg19_v2_chr13_-_107187462_107187462	1.00966	UCACAGU	ENST00000245323.4|EFNB2|ENSG00000125266.6|ephrin-B2
hg19_v2_chr6_+_136172820_136172846	1.00324	UCACAGU	ENST00000308191.6|PDE7B|ENSG00000171408.9|phosphodiesterase 7B
hg19_v2_chrX_+_17393543_17393543	1.00249	UCACAGU	ENST00000380060.3|NHS|ENSG00000188158.10|Nance-Horan syndrome (congenital cataracts and dental anomalies)
hg19_v2_chr6_+_391739_391759	0.997893	UCACAGU	ENST00000380956.4|IRF4|ENSG00000137265.10|interferon regulatory factor 4
hg19_v2_chr11_+_14665263_14665274	0.996358	UCACAGU	ENST00000282096.4|PDE3B|ENSG00000152270.4|phosphodiesterase 3B, cGMP-inhibited
hg19_v2_chr8_-_122653630_122653661	0.98948	UCACAGU	ENST00000303924.4|HAS2|ENSG00000170961.6|hyaluronan synthase 2
hg19_v2_chr6_+_126112001_126112062	0.986554	UCACAGU	ENST00000392477.2|NCOA7|ENSG00000111912.14|nuclear receptor coactivator 7
hg19_v2_chr8_+_80523321_80523387	0.968473	UCACAGU	ENST00000518111.1|STMN2|ENSG00000104435.9|stathmin-like 2
hg19_v2_chr10_-_21786179_21786228	0.968426	UCACAGU	ENST00000377113.5|CASC10|ENSG00000204682.5|cancer susceptibility candidate 10
hg19_v2_chr1_+_955448_955508	0.963772	UCACAGU	ENST00000379370.2|AGRN|ENSG00000188157.9|agrin
hg19_v2_chr11_-_86666427_86666450	0.962866	UCACAGU	ENST00000531380.1|FZD4|ENSG00000174804.3|frizzled family receptor 4
hg19_v2_chr1_-_48462566_48462595	0.961399	UCACAGU	ENST00000606738.2|TRABD2B|ENSG00000269113.3|TraB domain containing 2B
hg19_v2_chr2_-_235405679_235405739	0.956684	UCACAGU	ENST00000390645.2|ARL4C|ENSG00000188042.5|ADP-ribosylation factor-like 4C
hg19_v2_chr8_-_127570603_127570648	0.954395	UCACAGU	ENST00000304916.3|FAM84B|ENSG00000168672.3|family with sequence similarity 84, member B
hg19_v2_chr17_-_36831156_36831187	0.953335	UCACAGU	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr11_-_102826434_102826469	0.949839	UCACAGU	ENST00000340273.4|MMP13|ENSG00000137745.7|matrix metallopeptidase 13 (collagenase 3) 	ENST00000260302.3|MMP13|ENSG00000137745.7|matrix metallopeptidase 13 (collagenase 3)
hg19_v2_chr3_+_122785895_122786001	0.946608	UCACAGU	ENST00000316218.7|PDIA5|ENSG00000065485.13|protein disulfide isomerase family A, member 5
hg19_v2_chr4_+_56815102_56815147	0.94055	UCACAGU	ENST00000257287.4|CEP135|ENSG00000174799.6|centrosomal protein 135kDa
hg19_v2_chr17_+_59529743_59529798	0.938968	UCACAGU	ENST00000589003.1|TBX4|ENSG00000121075.5|T-box 4 	ENST00000393853.4|TBX4|ENSG00000121075.5|T-box 4
hg19_v2_chr6_+_114178512_114178586	0.918795	UCACAGU	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr1_-_204329013_204329086	0.908127	UCACAGU	ENST00000272203.3|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6 	ENST00000414478.1|PLEKHA6|ENSG00000143850.8|pleckstrin homology domain containing, family A member 6
hg19_v2_chr19_-_43969796_43969813	0.900303	UCACAGU	ENST00000244333.3|LYPD3|ENSG00000124466.8|LY6/PLAUR domain containing 3
hg19_v2_chr3_-_116164306_116164380	0.89668	UCACAGU	ENST00000490035.2|LSAMP|ENSG00000185565.7|limbic system-associated membrane protein
hg19_v2_chr5_-_179780312_179780387	0.889503	UCACAGU	ENST00000253778.8|GFPT2|ENSG00000131459.8|glutamine-fructose-6-phosphate transaminase 2
hg19_v2_chr14_-_39901618_39901704	0.88672	UCACAGU	ENST00000554932.1|FBXO33|ENSG00000165355.7|F-box protein 33 	ENST00000298097.7|FBXO33|ENSG00000165355.7|F-box protein 33
hg19_v2_chr19_+_45251804_45251840	0.883423	UCACAGU	ENST00000164227.5|BCL3|ENSG00000069399.8|B-cell CLL/lymphoma 3
hg19_v2_chr15_+_81293254_81293304	0.88107	UCACAGU	ENST00000267984.2|MESDC1|ENSG00000140406.2|mesoderm development candidate 1
hg19_v2_chr10_+_112257596_112257634	0.876267	UCACAGU	ENST00000369583.3|DUSP5|ENSG00000138166.5|dual specificity phosphatase 5
hg19_v2_chr7_+_94285637_94285689	0.8672	UCACAGU	ENST00000482108.1|PEG10|ENSG00000242265.1|paternally expressed 10 	ENST00000488574.1|PEG10|ENSG00000242265.1|paternally expressed 10
hg19_v2_chr11_+_369804_369804	0.864716	UCACAGU	ENST00000329962.6|B4GALNT4|ENSG00000182272.7|beta-1,4-N-acetyl-galactosaminyl transferase 4
hg19_v2_chr6_-_99873145_99873207	0.841177	UCACAGU	ENST00000369239.5|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein 	ENST00000438806.1|PNISR|ENSG00000132424.10|PNN-interacting serine/arginine-rich protein
hg19_v2_chr1_-_48227290_48227290	0.841135	UCACAGU	ENST00000594280.1|FLJ00388|ENSG00000273395.1|FLJ00388
hg19_v2_chr15_+_33010175_33010211	0.838594	UCACAGU	ENST00000300177.4|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560677.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist 	ENST00000560830.1|GREM1|ENSG00000166923.6|gremlin 1, DAN family BMP antagonist
hg19_v2_chr19_+_51815102_51815102	0.837459	UCACAGU	ENST00000270642.8|IGLON5|ENSG00000142549.9|IgLON family member 5
hg19_v2_chr2_-_20212422_20212455	0.836678	UCACAGU	ENST00000421259.2|MATN3|ENSG00000132031.8|matrilin 3 	ENST00000407540.3|MATN3|ENSG00000132031.8|matrilin 3
hg19_v2_chr12_+_79258547_79258607	0.830797	UCACAGU	ENST00000457153.2|SYT1|ENSG00000067715.9|synaptotagmin I
hg19_v2_chr5_+_110559784_110559803	0.829861	UCACAGU	ENST00000282356.4|CAMK4|ENSG00000152495.6|calcium/calmodulin-dependent protein kinase IV
hg19_v2_chr16_-_68482440_68482591	0.827735	UCACAGU	ENST00000219334.5|SMPD3|ENSG00000103056.7|sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II)
hg19_v2_chr6_+_30524663_30524799	0.825378	UCACAGU	ENST00000376560.3|PRR3|ENSG00000204576.7|proline rich 3
hg19_v2_chr19_+_15218180_15218249	0.821424	UCACAGU	ENST00000342784.2|SYDE1|ENSG00000105137.8|synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 	ENST00000597977.1|SYDE1|ENSG00000105137.8|synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 	ENST00000600440.1|SYDE1|ENSG00000105137.8|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
hg19_v2_chrX_-_74145273_74145319	0.816742	UCACAGU	ENST00000055682.6|KIAA2022|ENSG00000050030.9|KIAA2022
hg19_v2_chr10_-_90712520_90712536	0.809003	UCACAGU	ENST00000224784.6|ACTA2|ENSG00000107796.8|actin, alpha 2, smooth muscle, aorta
hg19_v2_chr1_+_65613217_65613331	0.801862	UCACAGU	ENST00000545314.1|AK4|ENSG00000162433.10|adenylate kinase 4
hg19_v2_chr11_+_101981169_101981210	0.777315	UCACAGU	ENST00000526343.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000282441.5|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000537274.1|YAP1|ENSG00000137693.9|Yes-associated protein 1 	ENST00000345877.2|YAP1|ENSG00000137693.9|Yes-associated protein 1
hg19_v2_chr10_+_60272814_60272900	0.776933	UCACAGU	ENST00000373886.3|BICC1|ENSG00000122870.7|bicaudal C homolog 1 (Drosophila)
hg19_v2_chr12_-_54673871_54673925	0.774436	UCACAGU	ENST00000209875.4|CBX5|ENSG00000094916.9|chromobox homolog 5
hg19_v2_chr20_-_62610982_62611008	0.772382	UCACAGU	ENST00000369886.3|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10 	ENST00000450107.1|SAMD10|ENSG00000130590.9|sterile alpha motif domain containing 10
hg19_v2_chr3_-_164913777_164913790	0.768574	UCACAGU	ENST00000475390.1|SLITRK3|ENSG00000121871.3|SLIT and NTRK-like family, member 3
hg19_v2_chr3_-_134093395_134093436	0.762611	UCACAGU	ENST00000249883.5|AMOTL2|ENSG00000114019.10|angiomotin like 2
hg19_v2_chr12_-_49351303_49351334	0.761312	UCACAGU	ENST00000256682.4|ARF3|ENSG00000134287.5|ADP-ribosylation factor 3
hg19_v2_chr12_-_77272765_77272840	0.76002	UCACAGU	ENST00000547435.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000552330.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000546966.1|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2 	ENST00000311083.5|CSRP2|ENSG00000175183.5|cysteine and glycine-rich protein 2
hg19_v2_chrX_+_78426469_78426469	0.757395	UCACAGU	ENST00000276077.1|GPR174|ENSG00000147138.1|G protein-coupled receptor 174
hg19_v2_chr3_+_152879985_152880038	0.753516	UCACAGU	ENST00000323534.2|RAP2B|ENSG00000181467.2|RAP2B, member of RAS oncogene family
hg19_v2_chr8_-_41166953_41167016	0.753344	UCACAGU	ENST00000220772.3|SFRP1|ENSG00000104332.7|secreted frizzled-related protein 1
hg19_v2_chr5_-_160279207_160279247	0.75322	UCACAGU	ENST00000327245.5|ATP10B|ENSG00000118322.8|ATPase, class V, type 10B
hg19_v2_chr1_+_117452669_117452748	0.752871	UCACAGU	ENST00000393203.2|PTGFRN|ENSG00000134247.9|prostaglandin F2 receptor inhibitor
hg19_v2_chr1_-_206945830_206945845	0.750725	UCACAGU	ENST00000423557.1|IL10|ENSG00000136634.5|interleukin 10
hg19_v2_chr15_+_29131103_29131186	0.749993	UCACAGU	ENST00000558402.1|APBA2|ENSG00000034053.10|amyloid beta (A4) precursor protein-binding, family A, member 2 	ENST00000558330.1|APBA2|ENSG00000034053.10|amyloid beta (A4) precursor protein-binding, family A, member 2
hg19_v2_chr12_+_50135588_50135605	0.747276	UCACAGU	ENST00000423828.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6 	ENST00000550445.1|TMBIM6|ENSG00000139644.8|transmembrane BAX inhibitor motif containing 6
hg19_v2_chr16_+_1756162_1756241	0.744189	UCACAGU	ENST00000250894.4|MAPK8IP3|ENSG00000138834.8|mitogen-activated protein kinase 8 interacting protein 3 	ENST00000356010.5|MAPK8IP3|ENSG00000138834.8|mitogen-activated protein kinase 8 interacting protein 3
hg19_v2_chr9_+_114659046_114659102	0.74356	UCACAGU	ENST00000374279.3|UGCG|ENSG00000148154.5|UDP-glucose ceramide glucosyltransferase
hg19_v2_chr16_+_577697_577856	0.741004	UCACAGU	ENST00000562370.1|CAPN15|ENSG00000103326.6|calpain 15 	ENST00000568988.1|CAPN15|ENSG00000103326.6|calpain 15 	ENST00000219611.2|CAPN15|ENSG00000103326.6|calpain 15
hg19_v2_chr2_+_204801471_204801503	0.738719	UCACAGU	ENST00000316386.6|ICOS|ENSG00000163600.8|inducible T-cell co-stimulator 	ENST00000435193.1|ICOS|ENSG00000163600.8|inducible T-cell co-stimulator
hg19_v2_chr9_+_130830451_130830572	0.738172	UCACAGU	ENST00000373068.2|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 	ENST00000373069.5|SLC25A25|ENSG00000148339.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
hg19_v2_chr19_+_45973120_45973171	0.733142	UCACAGU	ENST00000592811.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B 	ENST00000586615.1|FOSB|ENSG00000125740.9|FBJ murine osteosarcoma viral oncogene homolog B
hg19_v2_chr5_-_38595498_38595514	0.732757	UCACAGU	ENST00000263409.4|LIFR|ENSG00000113594.5|leukemia inhibitory factor receptor alpha
hg19_v2_chr6_+_168841817_168841848	0.73226	UCACAGU	ENST00000356284.2|SMOC2|ENSG00000112562.14|SPARC related modular calcium binding 2 	ENST00000354536.5|SMOC2|ENSG00000112562.14|SPARC related modular calcium binding 2
hg19_v2_chr7_+_20370746_20370778	0.730467	UCACAGU	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr10_+_8096631_8096660	0.729195	UCACAGU	ENST00000379328.3|GATA3|ENSG00000107485.11|GATA binding protein 3
hg19_v2_chr5_-_59995921_59996000	0.727475	UCACAGU	ENST00000453022.2|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B 	ENST00000545085.1|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B 	ENST00000265036.5|DEPDC1B|ENSG00000035499.8|DEP domain containing 1B
hg19_v2_chr1_+_228194693_228194783	0.72595	UCACAGU	ENST00000284523.1|WNT3A|ENSG00000154342.4|wingless-type MMTV integration site family, member 3A 	ENST00000366753.2|WNT3A|ENSG00000154342.4|wingless-type MMTV integration site family, member 3A
hg19_v2_chr7_+_100210133_100210214	0.716682	UCACAGU	ENST00000393950.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3 	ENST00000424091.2|MOSPD3|ENSG00000106330.7|motile sperm domain containing 3
hg19_v2_chr3_+_11034403_11034492	0.715971	UCACAGU	ENST00000287766.4|SLC6A1|ENSG00000157103.6|solute carrier family 6 (neurotransmitter transporter), member 1 	ENST00000425938.1|SLC6A1|ENSG00000157103.6|solute carrier family 6 (neurotransmitter transporter), member 1
hg19_v2_chr15_+_59730348_59730435	0.715755	UCACAGU	ENST00000288228.5|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000559628.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000557914.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A 	ENST00000560474.1|FAM81A|ENSG00000157470.7|family with sequence similarity 81, member A
hg19_v2_chr11_+_120081475_120081488	0.714111	UCACAGU	ENST00000328965.4|OAF|ENSG00000184232.4|OAF homolog (Drosophila)
hg19_v2_chr13_+_24734844_24734873	0.70814	UCACAGU	ENST00000382108.3|SPATA13|ENSG00000182957.11|spermatogenesis associated 13
hg19_v2_chr1_+_176432298_176432319	0.70673	UCACAGU	ENST00000367661.3|PAPPA2|ENSG00000116183.6|pappalysin 2 	ENST00000367662.3|PAPPA2|ENSG00000116183.6|pappalysin 2
hg19_v2_chr12_-_106641728_106641805	0.704923	UCACAGU	ENST00000378026.4|CKAP4|ENSG00000136026.9|cytoskeleton-associated protein 4
hg19_v2_chr13_+_33160553_33160564	0.702398	UCACAGU	ENST00000315596.10|PDS5B|ENSG00000083642.14|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
hg19_v2_chr9_+_132934835_132934857	0.698043	UCACAGU	ENST00000372398.3|NCS1|ENSG00000107130.6|neuronal calcium sensor 1
hg19_v2_chr4_-_147442982_147443019	0.696458	UCACAGU	ENST00000511374.1|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7 	ENST00000264986.3|SLC10A7|ENSG00000120519.10|solute carrier family 10, member 7
hg19_v2_chr17_+_1958388_1958404	0.696132	UCACAGU	ENST00000399849.3|HIC1|ENSG00000177374.8|hypermethylated in cancer 1
hg19_v2_chr11_-_67888671_67888774	0.689035	UCACAGU	ENST00000265689.4|CHKA|ENSG00000110721.7|choline kinase alpha
hg19_v2_chr17_+_8924837_8924872	0.686781	UCACAGU	ENST00000173229.2|NTN1|ENSG00000065320.4|netrin 1
hg19_v2_chr17_+_72983674_72983768	0.686154	UCACAGU	ENST00000337231.5|CDR2L|ENSG00000109089.7|cerebellar degeneration-related protein 2-like
hg19_v2_chr5_-_43313574_43313614	0.680593	UCACAGU	ENST00000325110.6|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 	ENST00000433297.2|HMGCS1|ENSG00000112972.10|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
hg19_v2_chr7_-_75368248_75368265	0.675746	UCACAGU	ENST00000434438.2|HIP1|ENSG00000127946.12|huntingtin interacting protein 1 	ENST00000336926.6|HIP1|ENSG00000127946.12|huntingtin interacting protein 1
hg19_v2_chr5_-_1524015_1524108	0.674436	UCACAGU	ENST00000283415.3|LPCAT1|ENSG00000153395.5|lysophosphatidylcholine acyltransferase 1
hg19_v2_chr17_+_38375574_38375615	0.673483	UCACAGU	ENST00000323571.4|WIPF2|ENSG00000171475.9|WAS/WASL interacting protein family, member 2 	ENST00000585043.1|WIPF2|ENSG00000171475.9|WAS/WASL interacting protein family, member 2 	ENST00000394103.3|WIPF2|ENSG00000171475.9|WAS/WASL interacting protein family, member 2 	ENST00000536600.1|WIPF2|ENSG00000171475.9|WAS/WASL interacting protein family, member 2
hg19_v2_chr21_-_39870339_39870443	0.669005	UCACAGU	ENST00000429727.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398905.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000398907.1|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000453032.2|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog 	ENST00000288319.7|ERG|ENSG00000157554.14|v-ets avian erythroblastosis virus E26 oncogene homolog
hg19_v2_chr12_-_92539614_92539673	0.664507	UCACAGU	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr5_+_74632993_74633028	0.661809	UCACAGU	ENST00000287936.4|HMGCR|ENSG00000113161.11|3-hydroxy-3-methylglutaryl-CoA reductase
hg19_v2_chr20_+_34700333_34700348	0.655488	UCACAGU	ENST00000441639.1|EPB41L1|ENSG00000088367.16|erythrocyte membrane protein band 4.1-like 1
hg19_v2_chr16_+_23847339_23847350	0.653833	UCACAGU	ENST00000303531.7|PRKCB|ENSG00000166501.8|protein kinase C, beta
hg19_v2_chr19_+_1286097_1286153	0.651164	UCACAGU	ENST00000215368.2|EFNA2|ENSG00000099617.2|ephrin-A2
hg19_v2_chr21_-_44846999_44847017	0.648588	UCACAGU	ENST00000270162.6|SIK1|ENSG00000142178.7|salt-inducible kinase 1
hg19_v2_chr1_+_82266053_82266082	0.647615	UCACAGU	ENST00000370715.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370713.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000319517.6|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000370717.2|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000394879.1|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000271029.4|LPHN2|ENSG00000117114.15|latrophilin 2 	ENST00000335786.5|LPHN2|ENSG00000117114.15|latrophilin 2
hg19_v2_chr8_-_22550815_22550844	0.646375	UCACAGU	ENST00000317216.2|EGR3|ENSG00000179388.8|early growth response 3
hg19_v2_chr15_+_84322827_84322861	0.640729	UCACAGU	ENST00000286744.5|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3 	ENST00000567476.1|ADAMTSL3|ENSG00000156218.8|ADAMTS-like 3
hg19_v2_chrX_+_105066524_105066552	0.632944	UCACAGU	ENST00000243300.9|NRK|ENSG00000123572.12|Nik related kinase 	ENST00000428173.2|NRK|ENSG00000123572.12|Nik related kinase
hg19_v2_chr6_+_142622991_142623004	0.631184	UCACAGU	ENST00000230173.6|GPR126|ENSG00000112414.10|G protein-coupled receptor 126 	ENST00000367608.2|GPR126|ENSG00000112414.10|G protein-coupled receptor 126
hg19_v2_chr22_-_44258360_44258402	0.626884	UCACAGU	ENST00000330884.4|SULT4A1|ENSG00000130540.9|sulfotransferase family 4A, member 1 	ENST00000249130.5|SULT4A1|ENSG00000130540.9|sulfotransferase family 4A, member 1
hg19_v2_chr17_+_15848231_15848231	0.619003	UCACAGU	ENST00000304222.2|ADORA2B|ENSG00000170425.3|adenosine A2b receptor
hg19_v2_chr2_-_9143786_9143942	0.618478	UCACAGU	ENST00000462696.1|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2 	ENST00000305997.3|MBOAT2|ENSG00000143797.7|membrane bound O-acyltransferase domain containing 2
hg19_v2_chr1_+_220701456_220701574	0.616776	UCACAGU	ENST00000366918.4|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1 	ENST00000402574.1|MARK1|ENSG00000116141.11|MAP/microtubule affinity-regulating kinase 1
hg19_v2_chr20_+_3776371_3776506	0.612131	UCACAGU	ENST00000245960.5|CDC25B|ENSG00000101224.13|cell division cycle 25B
hg19_v2_chr12_-_120907459_120907596	0.610986	UCACAGU	ENST00000229390.3|SRSF9|ENSG00000111786.4|serine/arginine-rich splicing factor 9
hg19_v2_chr17_-_80056099_80056208	0.608892	UCACAGU	ENST00000306749.2|FASN|ENSG00000169710.6|fatty acid synthase
hg19_v2_chr7_-_92463210_92463231	0.603571	UCACAGU	ENST00000265734.4|CDK6|ENSG00000105810.5|cyclin-dependent kinase 6
hg19_v2_chr10_+_104474207_104474297	0.596899	UCACAGU	ENST00000602831.1|SFXN2|ENSG00000156398.8|sideroflexin 2 	ENST00000369893.5|SFXN2|ENSG00000156398.8|sideroflexin 2
hg19_v2_chr1_-_35395178_35395265	0.592466	UCACAGU	ENST00000373347.1|DLGAP3|ENSG00000116544.7|discs, large (Drosophila) homolog-associated protein 3
hg19_v2_chrX_-_154493791_154493874	0.588032	UCACAGU	ENST00000369454.3|RAB39B|ENSG00000155961.4|RAB39B, member RAS oncogene family
hg19_v2_chr12_+_67663056_67663067	0.587304	UCACAGU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr16_+_66400533_66400545	0.586084	UCACAGU	ENST00000341529.3|CDH5|ENSG00000179776.13|cadherin 5, type 2 (vascular endothelium)
hg19_v2_chr18_+_49866496_49866548	0.584623	UCACAGU	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chr2_+_23608064_23608088	0.582131	UCACAGU	ENST00000486442.1|KLHL29|ENSG00000119771.10|kelch-like family member 29
hg19_v2_chr17_+_54911444_54911564	0.57969	UCACAGU	ENST00000284061.3|DGKE|ENSG00000153933.5|diacylglycerol kinase, epsilon 64kDa 	ENST00000572810.1|DGKE|ENSG00000153933.5|diacylglycerol kinase, epsilon 64kDa
hg19_v2_chr12_-_12419703_12419811	0.57837	UCACAGU	ENST00000543091.1|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6 	ENST00000261349.4|LRP6|ENSG00000070018.4|low density lipoprotein receptor-related protein 6
hg19_v2_chr20_+_48599506_48599536	0.578076	UCACAGU	ENST00000244050.2|SNAI1|ENSG00000124216.3|snail family zinc finger 1
hg19_v2_chr12_-_109747023_109747033	0.576353	UCACAGU	ENST00000355216.1|FOXN4|ENSG00000139445.13|forkhead box N4 	ENST00000299162.5|FOXN4|ENSG00000139445.13|forkhead box N4
hg19_v2_chr2_+_206547215_206547232	0.573665	UCACAGU	ENST00000360409.3|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000540178.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000540841.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000355117.4|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000450507.1|NRP2|ENSG00000118257.12|neuropilin 2 	ENST00000417189.1|NRP2|ENSG00000118257.12|neuropilin 2
hg19_v2_chr4_+_26862400_26862416	0.570872	UCACAGU	ENST00000467011.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000412829.2|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr1_-_115259337_115259515	0.561769	UCACAGU	ENST00000369535.4|NRAS|ENSG00000213281.4|neuroblastoma RAS viral (v-ras) oncogene homolog
hg19_v2_chr4_-_39640700_39640712	0.556204	UCACAGU	ENST00000295958.5|SMIM14|ENSG00000163683.7|small integral membrane protein 14
hg19_v2_chr14_+_85996471_85996497	0.555489	UCACAGU	ENST00000330753.4|FLRT2|ENSG00000185070.6|fibronectin leucine rich transmembrane protein 2
hg19_v2_chr9_-_91793675_91793698	0.551396	UCACAGU	ENST00000375835.4|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3 	ENST00000375830.1|SHC3|ENSG00000148082.5|SHC (Src homology 2 domain containing) transforming protein 3
hg19_v2_chr3_-_64211112_64211152	0.55104	UCACAGU	ENST00000295902.6|PRICKLE2|ENSG00000163637.7|prickle homolog 2 (Drosophila)
hg19_v2_chr2_-_151344172_151344243	0.540543	UCACAGU	ENST00000375734.2|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000263895.4|RND3|ENSG00000115963.9|Rho family GTPase 3 	ENST00000454202.1|RND3|ENSG00000115963.9|Rho family GTPase 3
hg19_v2_chr12_+_32112340_32112358	0.538015	UCACAGU	ENST00000540924.1|KIAA1551|ENSG00000174718.7|KIAA1551 	ENST00000312561.4|KIAA1551|ENSG00000174718.7|KIAA1551
hg19_v2_chr10_-_102279586_102279711	0.531767	UCACAGU	ENST00000370345.3|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000451524.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000370329.5|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae)
hg19_v2_chr13_+_49550015_49550070	0.530325	UCACAGU	ENST00000492622.2|FNDC3A|ENSG00000102531.12|fibronectin type III domain containing 3A
hg19_v2_chr9_+_116638562_116638606	0.526144	UCACAGU	ENST00000374126.5|ZNF618|ENSG00000157657.10|zinc finger protein 618 	ENST00000288466.7|ZNF618|ENSG00000157657.10|zinc finger protein 618
hg19_v2_chr15_+_98503922_98503964	0.521717	UCACAGU	ENST00000268042.6|ARRDC4|ENSG00000140450.7|arrestin domain containing 4
hg19_v2_chr2_-_100721178_100721307	0.518731	UCACAGU	ENST00000409236.2|AFF3|ENSG00000144218.14|AF4/FMR2 family, member 3
hg19_v2_chr8_+_16884740_16884804	0.517357	UCACAGU	ENST00000318063.5|MICU3|ENSG00000155970.7|mitochondrial calcium uptake family, member 3
hg19_v2_chr10_-_124768300_124768334	0.516583	UCACAGU	ENST00000368886.5|IKZF5|ENSG00000095574.7|IKAROS family zinc finger 5 (Pegasus)
hg19_v2_chr6_-_42419649_42419789	0.515895	UCACAGU	ENST00000372922.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000541110.1|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1 	ENST00000372917.4|TRERF1|ENSG00000124496.8|transcriptional regulating factor 1
hg19_v2_chr5_+_31193847_31193887	0.510749	UCACAGU	ENST00000514738.1|CDH6|ENSG00000113361.8|cadherin 6, type 2, K-cadherin (fetal kidney) 	ENST00000265071.2|CDH6|ENSG00000113361.8|cadherin 6, type 2, K-cadherin (fetal kidney)
hg19_v2_chr9_-_127533519_127533576	0.507724	UCACAGU	ENST00000487099.2|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000344523.4|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1 	ENST00000373584.3|NR6A1|ENSG00000148200.12|nuclear receptor subfamily 6, group A, member 1
hg19_v2_chr4_+_113970772_113970885	0.507387	UCACAGU	ENST00000504454.1|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000394537.3|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000357077.4|ANK2|ENSG00000145362.12|ankyrin 2, neuronal 	ENST00000264366.6|ANK2|ENSG00000145362.12|ankyrin 2, neuronal
hg19_v2_chr10_-_70287231_70287290	0.506002	UCACAGU	ENST00000609923.1|SLC25A16|ENSG00000122912.10|solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
hg19_v2_chrX_+_16804544_16804613	0.503861	UCACAGU	ENST00000380122.5|TXLNG|ENSG00000086712.8|taxilin gamma 	ENST00000398155.4|TXLNG|ENSG00000086712.8|taxilin gamma
hg19_v2_chr3_+_141205852_141205929	0.503171	UCACAGU	ENST00000286364.3|RASA2|ENSG00000155903.7|RAS p21 protein activator 2 	ENST00000452898.1|RASA2|ENSG00000155903.7|RAS p21 protein activator 2
hg19_v2_chr1_+_192544857_192544912	0.502697	UCACAGU	ENST00000367459.3|RGS1|ENSG00000090104.7|regulator of G-protein signaling 1 	ENST00000469578.2|RGS1|ENSG00000090104.7|regulator of G-protein signaling 1
hg19_v2_chr1_-_222885770_222885866	0.502334	UCACAGU	ENST00000355727.2|AIDA|ENSG00000186063.8|axin interactor, dorsalization associated 	ENST00000340020.6|AIDA|ENSG00000186063.8|axin interactor, dorsalization associated
hg19_v2_chr5_+_71403061_71403169	0.495506	UCACAGU	ENST00000512974.1|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B 	ENST00000296755.7|MAP1B|ENSG00000131711.10|microtubule-associated protein 1B
hg19_v2_chr4_-_42154895_42154895	0.495442	UCACAGU	ENST00000502486.1|BEND4|ENSG00000188848.11|BEN domain containing 4 	ENST00000504360.1|BEND4|ENSG00000188848.11|BEN domain containing 4
hg19_v2_chr12_+_50451331_50451429	0.492779	UCACAGU	ENST00000228468.4|ASIC1|ENSG00000110881.7|acid-sensing (proton-gated) ion channel 1
hg19_v2_chr14_-_57277178_57277203	0.49061	UCACAGU	ENST00000339475.5|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000554559.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2 	ENST00000555804.1|OTX2|ENSG00000165588.12|orthodenticle homeobox 2
hg19_v2_chr14_-_64194745_64194799	0.490056	UCACAGU	ENST00000247225.6|SGPP1|ENSG00000126821.7|sphingosine-1-phosphate phosphatase 1
hg19_v2_chr3_+_58223228_58223282	0.489328	UCACAGU	ENST00000478253.1|ABHD6|ENSG00000163686.9|abhydrolase domain containing 6 	ENST00000295962.4|ABHD6|ENSG00000163686.9|abhydrolase domain containing 6
hg19_v2_chr17_+_12569306_12569344	0.48825	UCACAGU	ENST00000425538.1|MYOCD|ENSG00000141052.13|myocardin
hg19_v2_chr12_-_93835665_93835750	0.487925	UCACAGU	ENST00000552442.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N 	ENST00000550657.1|UBE2N|ENSG00000177889.5|ubiquitin-conjugating enzyme E2N
hg19_v2_chr15_+_73344791_73344900	0.485128	UCACAGU	ENST00000261908.6|NEO1|ENSG00000067141.12|neogenin 1
hg19_v2_chr2_+_158114051_158114110	0.483149	UCACAGU	ENST00000259056.4|GALNT5|ENSG00000136542.4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5)
hg19_v2_chr1_+_70876891_70876917	0.480321	UCACAGU	ENST00000411986.2|CTH|ENSG00000116761.7|cystathionase (cystathionine gamma-lyase)
hg19_v2_chr2_-_109605663_109605828	0.479237	UCACAGU	ENST00000409271.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000258443.2|EDAR|ENSG00000135960.5|ectodysplasin A receptor 	ENST00000376651.1|EDAR|ENSG00000135960.5|ectodysplasin A receptor
hg19_v2_chr1_+_213123915_213123955	0.478095	UCACAGU	ENST00000366968.4|VASH2|ENSG00000143494.11|vasohibin 2 	ENST00000490792.1|VASH2|ENSG00000143494.11|vasohibin 2
hg19_v2_chr7_-_79082867_79082900	0.476554	UCACAGU	ENST00000419488.1|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2 	ENST00000354212.4|MAGI2|ENSG00000187391.13|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg19_v2_chr19_+_11200038_11200155	0.475073	UCACAGU	ENST00000558518.1|LDLR|ENSG00000130164.7|low density lipoprotein receptor 	ENST00000557933.1|LDLR|ENSG00000130164.7|low density lipoprotein receptor 	ENST00000455727.2|LDLR|ENSG00000130164.7|low density lipoprotein receptor 	ENST00000535915.1|LDLR|ENSG00000130164.7|low density lipoprotein receptor 	ENST00000545707.1|LDLR|ENSG00000130164.7|low density lipoprotein receptor 	ENST00000558013.1|LDLR|ENSG00000130164.7|low density lipoprotein receptor
hg19_v2_chr19_+_19496624_19496660	0.474427	UCACAGU	ENST00000494516.2|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A 	ENST00000360315.3|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A 	ENST00000252577.5|GATAD2A|ENSG00000167491.13|GATA zinc finger domain containing 2A
hg19_v2_chr8_-_10588010_10588030	0.468834	UCACAGU	ENST00000304501.1|SOX7|ENSG00000171056.6|SRY (sex determining region Y)-box 7
hg19_v2_chr8_+_26240414_26240631	0.46624	UCACAGU	ENST00000380629.2|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr4_-_122744998_122745093	0.463227	UCACAGU	ENST00000274026.5|CCNA2|ENSG00000145386.5|cyclin A2
hg19_v2_chr5_+_109025067_109025146	0.463162	UCACAGU	ENST00000261483.4|MAN2A1|ENSG00000112893.5|mannosidase, alpha, class 2A, member 1
hg19_v2_chr2_-_208030647_208030689	0.461684	UCACAGU	ENST00000309446.6|KLF7|ENSG00000118263.10|Kruppel-like factor 7 (ubiquitous)
hg19_v2_chr1_+_6673745_6673830	0.459331	UCACAGU	ENST00000377648.4|PHF13|ENSG00000116273.5|PHD finger protein 13
hg19_v2_chr12_+_69004619_69004699	0.458715	UCACAGU	ENST00000250559.9|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000393436.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000425247.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000489473.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000422358.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000541167.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538283.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000341355.5|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000537460.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000450214.2|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000545270.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000538980.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000542018.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family 	ENST00000543393.1|RAP1B|ENSG00000127314.13|RAP1B, member of RAS oncogene family
hg19_v2_chr3_+_150804676_150804697	0.449174	UCACAGU	ENST00000474524.1|MED12L|ENSG00000144893.8|mediator complex subunit 12-like 	ENST00000273432.4|MED12L|ENSG00000144893.8|mediator complex subunit 12-like
hg19_v2_chr12_-_120806960_120806985	0.448527	UCACAGU	ENST00000257552.2|MSI1|ENSG00000135097.2|musashi RNA-binding protein 1
hg19_v2_chr1_+_180199393_180199426	0.444548	UCACAGU	ENST00000263726.2|LHX4|ENSG00000121454.4|LIM homeobox 4
hg19_v2_chr6_-_166075557_166075588	0.440296	UCACAGU	ENST00000539869.2|PDE10A|ENSG00000112541.9|phosphodiesterase 10A 	ENST00000366882.1|PDE10A|ENSG00000112541.9|phosphodiesterase 10A
hg19_v2_chr14_+_33408449_33408525	0.439374	UCACAGU	ENST00000346562.2|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000341321.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000548645.1|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000356141.4|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3 	ENST00000357798.5|NPAS3|ENSG00000151322.14|neuronal PAS domain protein 3
hg19_v2_chr13_+_52158610_52158654	0.434149	UCACAGU	ENST00000298125.5|WDFY2|ENSG00000139668.7|WD repeat and FYVE domain containing 2
hg19_v2_chr9_-_88714421_88714506	0.434084	UCACAGU	ENST00000388712.3|GOLM1|ENSG00000135052.12|golgi membrane protein 1
hg19_v2_chr6_-_30712313_30712332	0.431101	UCACAGU	ENST00000376377.2|IER3|ENSG00000137331.11|immediate early response 3 	ENST00000259874.5|IER3|ENSG00000137331.11|immediate early response 3
hg19_v2_chr9_+_124413873_124413969	0.423812	UCACAGU	ENST00000408936.3|DAB2IP|ENSG00000136848.12|DAB2 interacting protein
hg19_v2_chrX_-_3631635_3631698	0.421682	UCACAGU	ENST00000262848.5|PRKX|ENSG00000183943.5|protein kinase, X-linked
hg19_v2_chr14_+_100259666_100259685	0.419743	UCACAGU	ENST00000262233.6|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1 	ENST00000334192.4|EML1|ENSG00000066629.12|echinoderm microtubule associated protein like 1
hg19_v2_chr2_-_164592497_164592573	0.415542	UCACAGU	ENST00000333129.3|FIGN|ENSG00000182263.9|fidgetin 	ENST00000409634.1|FIGN|ENSG00000182263.9|fidgetin
hg19_v2_chr12_-_77459306_77459365	0.411717	UCACAGU	ENST00000547316.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000416496.2|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000550669.1|E2F7|ENSG00000165891.11|E2F transcription factor 7 	ENST00000322886.7|E2F7|ENSG00000165891.11|E2F transcription factor 7
hg19_v2_chr2_+_162272605_162272753	0.41165	UCACAGU	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr2_-_25142708_25142783	0.411346	UCACAGU	ENST00000260600.5|ADCY3|ENSG00000138031.10|adenylate cyclase 3 	ENST00000435135.1|ADCY3|ENSG00000138031.10|adenylate cyclase 3
hg19_v2_chr2_+_242641442_242641478	0.410168	UCACAGU	ENST00000313552.6|ING5|ENSG00000168395.10|inhibitor of growth family, member 5 	ENST00000406941.1|ING5|ENSG00000168395.10|inhibitor of growth family, member 5
hg19_v2_chr1_-_149889382_149889434	0.409589	UCACAGU	ENST00000369145.1|SV2A|ENSG00000159164.5|synaptic vesicle glycoprotein 2A 	ENST00000369146.3|SV2A|ENSG00000159164.5|synaptic vesicle glycoprotein 2A
hg19_v2_chr19_+_4229495_4229539	0.406826	UCACAGU	ENST00000221847.5|EBI3|ENSG00000105246.5|Epstein-Barr virus induced 3
hg19_v2_chr17_+_6939362_6939410	0.406778	UCACAGU	ENST00000308027.6|SLC16A13|ENSG00000174327.6|solute carrier family 16, member 13
hg19_v2_chr1_+_116184566_116184633	0.406442	UCACAGU	ENST00000355485.2|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1 	ENST00000369510.4|VANGL1|ENSG00000173218.10|VANGL planar cell polarity protein 1
hg19_v2_chr6_+_13925098_13925163	0.405981	UCACAGU	ENST00000488300.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000544682.1|RNF182|ENSG00000180537.8|ring finger protein 182 	ENST00000420478.2|RNF182|ENSG00000180537.8|ring finger protein 182
hg19_v2_chr15_+_76352178_76352306	0.404603	UCACAGU	ENST00000388942.3|C15orf27|ENSG00000169758.8|chromosome 15 open reading frame 27
hg19_v2_chr3_-_56502375_56502428	0.402279	UCACAGU	ENST00000288221.6|ERC2|ENSG00000187672.8|ELKS/RAB6-interacting/CAST family member 2
hg19_v2_chr5_+_143584814_143584840	0.401362	UCACAGU	ENST00000507359.3|KCTD16|ENSG00000183775.6|potassium channel tetramerization domain containing 16
hg19_v2_chr16_-_22385901_22385947	0.400943	UCACAGU	ENST00000268383.2|CDR2|ENSG00000140743.3|cerebellar degeneration-related protein 2, 62kDa
hg19_v2_chr17_+_37026106_37026123	0.400799	UCACAGU	ENST00000318008.6|LASP1|ENSG00000002834.13|LIM and SH3 protein 1
hg19_v2_chr14_-_92413727_92413743	0.399093	UCACAGU	ENST00000267620.10|FBLN5|ENSG00000140092.10|fibulin 5
hg19_v2_chr17_+_56833184_56833249	0.39424	UCACAGU	ENST00000308249.2|PPM1E|ENSG00000175175.4|protein phosphatase, Mg2+/Mn2+ dependent, 1E
hg19_v2_chrX_+_86772707_86772752	0.39284	UCACAGU	ENST00000373119.4|KLHL4|ENSG00000102271.9|kelch-like family member 4
hg19_v2_chr18_-_30050395_30050495	0.391215	UCACAGU	ENST00000269209.6|GAREM|ENSG00000141441.11|GRB2 associated, regulator of MAPK1 	ENST00000399218.4|GAREM|ENSG00000141441.11|GRB2 associated, regulator of MAPK1
hg19_v2_chr1_+_206557366_206557368	0.388348	UCACAGU	ENST00000414007.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2 	ENST00000419187.2|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr19_+_32896697_32896786	0.387963	UCACAGU	ENST00000586987.1|DPY19L3|ENSG00000178904.14|dpy-19-like 3 (C. elegans)
hg19_v2_chr1_+_15736359_15736463	0.387241	UCACAGU	ENST00000375980.4|EFHD2|ENSG00000142634.8|EF-hand domain family, member D2
hg19_v2_chr2_+_113403434_113403496	0.38598	UCACAGU	ENST00000272542.3|SLC20A1|ENSG00000144136.6|solute carrier family 20 (phosphate transporter), member 1
hg19_v2_chr4_-_177713788_177713881	0.385401	UCACAGU	ENST00000280193.2|VEGFC|ENSG00000150630.2|vascular endothelial growth factor C
hg19_v2_chr4_+_5053162_5053184	0.384127	UCACAGU	ENST00000282908.5|STK32B|ENSG00000152953.8|serine/threonine kinase 32B
hg19_v2_chr6_+_105404899_105404931	0.384072	UCACAGU	ENST00000345080.4|LIN28B|ENSG00000187772.6|lin-28 homolog B (C. elegans)
hg19_v2_chr1_+_201617450_201617465	0.382201	UCACAGU	ENST00000295624.6|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367297.4|NAV1|ENSG00000134369.11|neuron navigator 1 	ENST00000367300.3|NAV1|ENSG00000134369.11|neuron navigator 1
hg19_v2_chr11_+_63580855_63580889	0.381928	UCACAGU	ENST00000294244.4|C11orf84|ENSG00000168005.4|chromosome 11 open reading frame 84
hg19_v2_chr19_-_17356697_17356762	0.381543	UCACAGU	ENST00000291442.3|NR2F6|ENSG00000160113.5|nuclear receptor subfamily 2, group F, member 6
hg19_v2_chrX_+_102631248_102631335	0.379677	UCACAGU	ENST00000361298.4|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372645.3|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENST00000372635.1|NGFRAP1|ENSG00000166681.9|nerve growth factor receptor (TNFRSF16) associated protein 1
hg19_v2_chr19_-_13617247_13617319	0.377298	UCACAGU	ENST00000573710.2|CACNA1A|ENSG00000141837.14|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
hg19_v2_chr3_+_178866199_178866311	0.377091	UCACAGU	ENST00000263967.3|PIK3CA|ENSG00000121879.3|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
hg19_v2_chr2_+_85132749_85132788	0.376838	UCACAGU	ENST00000233143.4|TMSB10|ENSG00000034510.4|thymosin beta 10
hg19_v2_chr12_-_15942309_15942330	0.376418	UCACAGU	ENST00000544064.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000543523.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8 	ENST00000536793.1|EPS8|ENSG00000151491.8|epidermal growth factor receptor pathway substrate 8
hg19_v2_chr12_-_53893399_53893478	0.374198	UCACAGU	ENST00000267079.2|MAP3K12|ENSG00000139625.8|mitogen-activated protein kinase kinase kinase 12
hg19_v2_chrX_-_70288234_70288291	0.373574	UCACAGU	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr12_+_70760056_70760085	0.373068	UCACAGU	ENST00000258111.4|KCNMB4|ENSG00000135643.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
hg19_v2_chr7_+_50344289_50344378	0.37213	UCACAGU	ENST00000413698.1|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000359197.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000331340.3|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000357364.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000343574.5|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000349824.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000346667.4|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros) 	ENST00000440768.2|IKZF1|ENSG00000185811.12|IKAROS family zinc finger 1 (Ikaros)
hg19_v2_chr9_-_14314066_14314075	0.367242	UCACAGU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr15_-_73925651_73925773	0.367051	UCACAGU	ENST00000545878.1|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000287226.8|NPTN|ENSG00000156642.12|neuroplastin 	ENST00000345330.4|NPTN|ENSG00000156642.12|neuroplastin
hg19_v2_chr14_+_37131058_37131139	0.366531	UCACAGU	ENST00000361487.6|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr1_+_221051699_221051699	0.365651	UCACAGU	ENST00000366903.6|HLX|ENSG00000136630.11|H2.0-like homeobox
hg19_v2_chr4_+_81951957_81952119	0.364934	UCACAGU	ENST00000282701.2|BMP3|ENSG00000152785.6|bone morphogenetic protein 3
hg19_v2_chr7_+_90225796_90225811	0.36207	UCACAGU	ENST00000380050.3|CDK14|ENSG00000058091.12|cyclin-dependent kinase 14
hg19_v2_chr8_+_81397876_81397902	0.361656	UCACAGU	ENST00000430430.1|ZBTB10|ENSG00000205189.7|zinc finger and BTB domain containing 10
hg19_v2_chr17_-_48785216_48785291	0.360189	UCACAGU	ENST00000285243.6|ANKRD40|ENSG00000154945.6|ankyrin repeat domain 40
hg19_v2_chr20_-_50419055_50419066	0.358031	UCACAGU	ENST00000217086.4|SALL4|ENSG00000101115.8|spalt-like transcription factor 4
hg19_v2_chr5_+_156887027_156887059	0.356185	UCACAGU	ENST00000435489.2|NIPAL4|ENSG00000172548.10|NIPA-like domain containing 4 	ENST00000311946.7|NIPAL4|ENSG00000172548.10|NIPA-like domain containing 4
hg19_v2_chr1_-_160001737_160001790	0.355921	UCACAGU	ENST00000368090.2|PIGM|ENSG00000143315.5|phosphatidylinositol glycan anchor biosynthesis, class M
hg19_v2_chr13_-_111214015_111214080	0.355836	UCACAGU	ENST00000267328.3|RAB20|ENSG00000139832.3|RAB20, member RAS oncogene family
hg19_v2_chr4_-_90229142_90229217	0.355654	UCACAGU	ENST00000609438.1|GPRIN3|ENSG00000185477.4|GPRIN family member 3
hg19_v2_chrX_-_80065146_80065250	0.355459	UCACAGU	ENST00000373275.4|BRWD3|ENSG00000165288.10|bromodomain and WD repeat domain containing 3
hg19_v2_chrX_+_64708615_64708615	0.352937	UCACAGU	ENST00000338957.4|ZC3H12B|ENSG00000102053.11|zinc finger CCCH-type containing 12B 	ENST00000423889.3|ZC3H12B|ENSG00000102053.11|zinc finger CCCH-type containing 12B
hg19_v2_chr1_+_110453203_110453255	0.350468	UCACAGU	ENST00000357302.4|CSF1|ENSG00000184371.9|colony stimulating factor 1 (macrophage) 	ENST00000344188.5|CSF1|ENSG00000184371.9|colony stimulating factor 1 (macrophage) 	ENST00000329608.6|CSF1|ENSG00000184371.9|colony stimulating factor 1 (macrophage)
hg19_v2_chr4_+_174089904_174089921	0.348826	UCACAGU	ENST00000265000.4|GALNT7|ENSG00000109586.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
hg19_v2_chr17_-_53499310_53499353	0.34545	UCACAGU	ENST00000262065.3|MMD|ENSG00000108960.3|monocyte to macrophage differentiation-associated
hg19_v2_chr1_-_31196427_31196434	0.343763	UCACAGU	ENST00000373765.4|MATN1|ENSG00000162510.5|matrilin 1, cartilage matrix protein
hg19_v2_chrX_+_30671476_30671655	0.343009	UCACAGU	ENST00000378946.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378943.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378945.3|GK|ENSG00000198814.8|glycerol kinase 	ENST00000427190.1|GK|ENSG00000198814.8|glycerol kinase 	ENST00000378941.3|GK|ENSG00000198814.8|glycerol kinase
hg19_v2_chr1_-_179198702_179198741	0.340557	UCACAGU	ENST00000502732.1|ABL2|ENSG00000143322.15|c-abl oncogene 2, non-receptor tyrosine kinase
hg19_v2_chr1_-_39339777_39339777	0.338934	UCACAGU	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr11_-_63439013_63439091	0.338352	UCACAGU	ENST00000398868.3|ATL3|ENSG00000184743.8|atlastin GTPase 3
hg19_v2_chr22_+_41956767_41956852	0.337529	UCACAGU	ENST00000306149.7|CSDC2|ENSG00000172346.10|cold shock domain containing C2, RNA binding
hg19_v2_chr1_-_71513471_71513506	0.335284	UCACAGU	ENST00000370931.3|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000356595.4|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000306666.5|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000370932.2|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000351052.5|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000414819.1|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3) 	ENST00000370924.4|PTGER3|ENSG00000050628.16|prostaglandin E receptor 3 (subtype EP3)
hg19_v2_chr8_-_89339705_89339721	0.329038	UCACAGU	ENST00000286614.6|MMP16|ENSG00000156103.11|matrix metallopeptidase 16 (membrane-inserted)
hg19_v2_chr3_+_186330712_186330863	0.327727	UCACAGU	ENST00000411641.2|AHSG|ENSG00000145192.8|alpha-2-HS-glycoprotein 	ENST00000273784.5|AHSG|ENSG00000145192.8|alpha-2-HS-glycoprotein
hg19_v2_chr12_+_120875910_120876001	0.326469	UCACAGU	ENST00000551806.1|AL021546.6|ENSG00000111780.8|Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial
hg19_v2_chr13_-_103053946_103054124	0.321006	UCACAGU	ENST00000376131.4|FGF14|ENSG00000102466.11|fibroblast growth factor 14
hg19_v2_chr5_-_157002775_157002790	0.32095	UCACAGU	ENST00000257527.4|ADAM19|ENSG00000135074.11|ADAM metallopeptidase domain 19
hg19_v2_chr7_-_5463175_5463195	0.318777	UCACAGU	ENST00000399537.4|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18 	ENST00000430969.1|TNRC18|ENSG00000182095.10|trinucleotide repeat containing 18
hg19_v2_chr11_-_45687128_45687214	0.317746	UCACAGU	ENST00000308064.2|CHST1|ENSG00000175264.3|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
hg19_v2_chr17_-_40075219_40075275	0.316436	UCACAGU	ENST00000537919.1|ACLY|ENSG00000131473.12|ATP citrate lyase 	ENST00000352035.2|ACLY|ENSG00000131473.12|ATP citrate lyase 	ENST00000353196.1|ACLY|ENSG00000131473.12|ATP citrate lyase 	ENST00000393896.2|ACLY|ENSG00000131473.12|ATP citrate lyase
hg19_v2_chr16_-_75467318_75467408	0.314418	UCACAGU	ENST00000283882.3|CFDP1|ENSG00000153774.4|craniofacial development protein 1
hg19_v2_chr6_+_138188551_138188719	0.313477	UCACAGU	ENST00000237289.4|TNFAIP3|ENSG00000118503.10|tumor necrosis factor, alpha-induced protein 3 	ENST00000433680.1|TNFAIP3|ENSG00000118503.10|tumor necrosis factor, alpha-induced protein 3
hg19_v2_chr3_+_142838091_142838173	0.310766	UCACAGU	ENST00000309575.3|CHST2|ENSG00000175040.4|carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2
hg19_v2_chr1_+_206808918_206808931	0.309294	UCACAGU	ENST00000367108.3|DYRK3|ENSG00000143479.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
hg19_v2_chr5_+_32585605_32585706	0.308327	UCACAGU	ENST00000265073.4|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae) 	ENST00000515355.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae) 	ENST00000502897.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae) 	ENST00000510442.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr9_-_140196703_140196744	0.307397	UCACAGU	ENST00000356628.2|NRARP|ENSG00000198435.2|NOTCH-regulated ankyrin repeat protein
hg19_v2_chr14_-_81687197_81687280	0.305607	UCACAGU	ENST00000553612.1|GTF2A1|ENSG00000165417.7|general transcription factor IIA, 1, 19/37kDa
hg19_v2_chr5_-_93447333_93447386	0.304986	UCACAGU	ENST00000395965.3|FAM172A|ENSG00000113391.12|family with sequence similarity 172, member A 	ENST00000505869.1|FAM172A|ENSG00000113391.12|family with sequence similarity 172, member A 	ENST00000509163.1|FAM172A|ENSG00000113391.12|family with sequence similarity 172, member A
hg19_v2_chr11_-_108369101_108369159	0.304945	UCACAGU	ENST00000323468.5|KDELC2|ENSG00000178202.8|KDEL (Lys-Asp-Glu-Leu) containing 2
hg19_v2_chr18_-_31803435_31803515	0.304904	UCACAGU	ENST00000589544.1|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000269185.4|NOL4|ENSG00000101746.11|nucleolar protein 4 	ENST00000261592.5|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr17_-_50237343_50237373	0.304847	UCACAGU	ENST00000575181.1|CA10|ENSG00000154975.9|carbonic anhydrase X 	ENST00000570565.1|CA10|ENSG00000154975.9|carbonic anhydrase X
hg19_v2_chr4_+_52709229_52709345	0.299486	UCACAGU	ENST00000334635.5|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381441.3|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4 	ENST00000381437.4|DCUN1D4|ENSG00000109184.10|DCN1, defective in cullin neddylation 1, domain containing 4
hg19_v2_chr6_-_3457256_3457292	0.296926	UCACAGU	ENST00000436008.2|SLC22A23|ENSG00000137266.10|solute carrier family 22, member 23
hg19_v2_chr1_-_95007193_95007356	0.296429	UCACAGU	ENST00000370207.4|F3|ENSG00000117525.9|coagulation factor III (thromboplastin, tissue factor) 	ENST00000334047.7|F3|ENSG00000117525.9|coagulation factor III (thromboplastin, tissue factor)
hg19_v2_chr8_-_97173020_97173041	0.294457	UCACAGU	ENST00000287020.5|GDF6|ENSG00000156466.8|growth differentiation factor 6
hg19_v2_chr2_+_204571198_204571283	0.292294	UCACAGU	ENST00000374481.3|CD28|ENSG00000178562.13|CD28 molecule 	ENST00000458610.2|CD28|ENSG00000178562.13|CD28 molecule 	ENST00000324106.8|CD28|ENSG00000178562.13|CD28 molecule
hg19_v2_chrX_+_48916497_48916557	0.292265	UCACAGU	ENST00000496529.2|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120 	ENST00000376396.3|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120 	ENST00000422185.2|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120 	ENST00000603986.1|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120 	ENST00000536628.2|CCDC120|ENSG00000147144.8|coiled-coil domain containing 120
hg19_v2_chr3_-_9291063_9291136	0.290755	UCACAGU	ENST00000383836.3|SRGAP3|ENSG00000196220.11|SLIT-ROBO Rho GTPase activating protein 3
hg19_v2_chr10_-_52645416_52645444	0.289153	UCACAGU	ENST00000374001.2|A1CF|ENSG00000148584.10|APOBEC1 complementation factor 	ENST00000373997.3|A1CF|ENSG00000148584.10|APOBEC1 complementation factor 	ENST00000373995.3|A1CF|ENSG00000148584.10|APOBEC1 complementation factor 	ENST00000282641.2|A1CF|ENSG00000148584.10|APOBEC1 complementation factor 	ENST00000395495.1|A1CF|ENSG00000148584.10|APOBEC1 complementation factor 	ENST00000414883.1|A1CF|ENSG00000148584.10|APOBEC1 complementation factor
hg19_v2_chrX_+_49687216_49687265	0.286895	UCACAGU	ENST00000376088.3|CLCN5|ENSG00000171365.11|chloride channel, voltage-sensitive 5
hg19_v2_chr1_+_39456895_39456986	0.28636	UCACAGU	ENST00000432648.3|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000446189.2|AKIRIN1|ENSG00000174574.11|akirin 1 	ENST00000372984.4|AKIRIN1|ENSG00000174574.11|akirin 1
hg19_v2_chr2_-_191399426_191399475	0.285638	UCACAGU	ENST00000409150.3|TMEM194B|ENSG00000189362.7|transmembrane protein 194B
hg19_v2_chr16_+_1031762_1031808	0.285541	UCACAGU	ENST00000293894.3|SOX8|ENSG00000005513.9|SRY (sex determining region Y)-box 8
hg19_v2_chr4_-_100871506_100871545	0.283908	UCACAGU	ENST00000296417.5|H2AFZ|ENSG00000164032.7|H2A histone family, member Z
hg19_v2_chr3_+_113465866_113465925	0.282648	UCACAGU	ENST00000273398.3|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000538620.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000496747.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A 	ENST00000475322.1|ATP6V1A|ENSG00000114573.5|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A
hg19_v2_chr1_+_156163880_156163917	0.282001	UCACAGU	ENST00000359511.4|SLC25A44|ENSG00000160785.9|solute carrier family 25, member 44 	ENST00000423538.2|SLC25A44|ENSG00000160785.9|solute carrier family 25, member 44
hg19_v2_chr14_+_51706886_51707006	0.277925	UCACAGU	ENST00000457354.2|TMX1|ENSG00000139921.8|thioredoxin-related transmembrane protein 1
hg19_v2_chr4_+_77870856_77870919	0.276613	UCACAGU	ENST00000264893.6|SEPT11|ENSG00000138758.7|septin 11 	ENST00000502584.1|SEPT11|ENSG00000138758.7|septin 11 	ENST00000510641.1|SEPT11|ENSG00000138758.7|septin 11
hg19_v2_chr8_-_93115445_93115462	0.274406	UCACAGU	ENST00000523629.1|RUNX1T1|ENSG00000079102.12|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
hg19_v2_chr12_+_110152033_110152033	0.27342	UCACAGU	ENST00000538780.1|FAM222A|ENSG00000139438.5|family with sequence similarity 222, member A
hg19_v2_chr3_-_21792838_21792927	0.271313	UCACAGU	ENST00000281523.2|ZNF385D|ENSG00000151789.5|zinc finger protein 385D
hg19_v2_chr11_-_115375107_115375283	0.2707	UCACAGU	ENST00000545380.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000452722.3|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000537058.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000536727.1|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000542447.2|CADM1|ENSG00000182985.12|cell adhesion molecule 1 	ENST00000331581.6|CADM1|ENSG00000182985.12|cell adhesion molecule 1
hg19_v2_chr1_-_99470558_99470609	0.26965	UCACAGU	ENST00000370188.3|LPPR5|ENSG00000117598.7|Lipid phosphate phosphatase-related protein type 5
hg19_v2_chr4_-_87281224_87281375	0.2662	UCACAGU	ENST00000395169.3|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10 	ENST00000395161.2|MAPK10|ENSG00000109339.14|mitogen-activated protein kinase 10
hg19_v2_chr14_-_23526739_23526766	0.26617	UCACAGU	ENST00000397359.3|CDH24|ENSG00000139880.15|cadherin 24, type 2 	ENST00000487137.2|CDH24|ENSG00000139880.15|cadherin 24, type 2
hg19_v2_chr1_-_75139397_75139446	0.264479	UCACAGU	ENST00000326665.5|C1orf173|ENSG00000178965.9|chromosome 1 open reading frame 173
hg19_v2_chrX_-_110655391_110655449	0.263178	UCACAGU	ENST00000356915.2|DCX|ENSG00000077279.12|doublecortin 	ENST00000356220.3|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr13_+_42622781_42622889	0.260796	UCACAGU	ENST00000337343.4|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000261491.5|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta 	ENST00000379274.2|DGKH|ENSG00000102780.12|diacylglycerol kinase, eta
hg19_v2_chr14_-_27066636_27066701	0.260709	UCACAGU	ENST00000267422.7|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000344429.5|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000574031.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000465357.2|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1 	ENST00000547619.1|NOVA1|ENSG00000139910.15|neuro-oncological ventral antigen 1
hg19_v2_chr22_-_44708731_44708746	0.260487	UCACAGU	ENST00000381176.4|KIAA1644|ENSG00000138944.7|KIAA1644
hg19_v2_chr3_-_72496035_72496069	0.258675	UCACAGU	ENST00000477973.2|RYBP|ENSG00000163602.9|RING1 and YY1 binding protein
hg19_v2_chr2_-_216300784_216300895	0.252896	UCACAGU	ENST00000421182.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000432072.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000323926.6|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000336916.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357867.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000359671.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000346544.3|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000345488.5|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000357009.2|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000446046.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000356005.4|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000443816.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000426059.1|FN1|ENSG00000115414.14|fibronectin 1 	ENST00000354785.4|FN1|ENSG00000115414.14|fibronectin 1
hg19_v2_chrX_+_23352133_23352229	0.2509	UCACAGU	ENST00000379361.4|PTCHD1|ENSG00000165186.9|patched domain containing 1
hg19_v2_chr1_+_113161778_113161820	0.249007	UCACAGU	ENST00000263168.3|CAPZA1|ENSG00000116489.8|capping protein (actin filament) muscle Z-line, alpha 1
hg19_v2_chr1_-_184723942_184724047	0.247999	UCACAGU	ENST00000318130.8|EDEM3|ENSG00000116406.14|ER degradation enhancer, mannosidase alpha-like 3
hg19_v2_chr2_-_201936302_201936416	0.246528	UCACAGU	ENST00000453765.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000452799.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000446678.1|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B 	ENST00000418596.3|FAM126B|ENSG00000155744.5|family with sequence similarity 126, member B
hg19_v2_chr2_+_5832799_5832799	0.244446	UCACAGU	ENST00000322002.3|SOX11|ENSG00000176887.5|SRY (sex determining region Y)-box 11
hg19_v2_chr9_+_34958254_34958321	0.242922	UCACAGU	ENST00000242315.3|KIAA1045|ENSG00000122733.11|KIAA1045
hg19_v2_chr1_-_154531095_154531119	0.239361	UCACAGU	ENST00000292211.4|UBE2Q1|ENSG00000160714.5|ubiquitin-conjugating enzyme E2Q family member 1
hg19_v2_chr17_+_25621102_25621157	0.238577	UCACAGU	ENST00000581440.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000262394.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583742.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000579733.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000583193.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000581185.1|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000427287.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1 	ENST00000348811.2|WSB1|ENSG00000109046.10|WD repeat and SOCS box containing 1
hg19_v2_chr1_+_23037323_23037463	0.236246	UCACAGU	ENST00000544305.1|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000374630.3|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000400191.3|EPHB2|ENSG00000133216.12|EPH receptor B2 	ENST00000374632.3|EPHB2|ENSG00000133216.12|EPH receptor B2
hg19_v2_chr1_+_162531294_162531332	0.231736	UCACAGU	ENST00000367926.4|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1 	ENST00000271469.3|UAP1|ENSG00000117143.9|UDP-N-acteylglucosamine pyrophosphorylase 1
hg19_v2_chr16_+_86612112_86612123	0.231014	UCACAGU	ENST00000320241.3|FOXL1|ENSG00000176678.4|forkhead box L1
hg19_v2_chr11_-_30038490_30038590	0.230917	UCACAGU	ENST00000328224.6|KCNA4|ENSG00000182255.6|potassium voltage-gated channel, shaker-related subfamily, member 4
hg19_v2_chr3_+_67048721_67048760	0.23035	UCACAGU	ENST00000295568.4|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000484414.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000460576.1|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8 	ENST00000417314.2|KBTBD8|ENSG00000163376.7|kelch repeat and BTB (POZ) domain containing 8
hg19_v2_chr4_+_148402069_148402099	0.22959	UCACAGU	ENST00000358556.4|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000339690.5|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000511804.1|EDNRA|ENSG00000151617.11|endothelin receptor type A 	ENST00000324300.5|EDNRA|ENSG00000151617.11|endothelin receptor type A
hg19_v2_chr1_+_101361626_101361698	0.221021	UCACAGU	ENST00000370112.4|SLC30A7|ENSG00000162695.7|solute carrier family 30 (zinc transporter), member 7
hg19_v2_chr5_+_50678921_50678921	0.220092	UCACAGU	ENST00000230658.7|ISL1|ENSG00000016082.10|ISL LIM homeobox 1
hg19_v2_chr21_+_22370608_22370638	0.218358	UCACAGU	ENST00000400546.1|NCAM2|ENSG00000154654.10|neural cell adhesion molecule 2
hg19_v2_chr2_-_25194963_25194976	0.218297	UCACAGU	ENST00000264711.2|DNAJC27|ENSG00000115137.7|DnaJ (Hsp40) homolog, subfamily C, member 27
hg19_v2_chr9_+_112403088_112403142	0.217472	UCACAGU	ENST00000448454.2|PALM2|ENSG00000243444.3|paralemmin 2
hg19_v2_chr22_-_37099555_37099603	0.216997	UCACAGU	ENST00000300105.6|CACNG2|ENSG00000166862.6|calcium channel, voltage-dependent, gamma subunit 2
hg19_v2_chr4_+_699537_699600	0.216795	UCACAGU	ENST00000419774.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000362003.5|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000400151.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000427463.1|PCGF3|ENSG00000185619.13|polycomb group ring finger 3 	ENST00000470161.2|PCGF3|ENSG00000185619.13|polycomb group ring finger 3
hg19_v2_chr14_-_100070363_100070467	0.216458	UCACAGU	ENST00000380243.4|CCDC85C|ENSG00000205476.4|coiled-coil domain containing 85C
hg19_v2_chrX_+_108780062_108780105	0.214673	UCACAGU	ENST00000372106.1|NXT2|ENSG00000101888.7|nuclear transport factor 2-like export factor 2
hg19_v2_chr3_-_178790057_178790072	0.214118	UCACAGU	ENST00000311417.2|ZMAT3|ENSG00000172667.6|zinc finger, matrin-type 3
hg19_v2_chr12_+_8234807_8234855	0.213561	UCACAGU	ENST00000339754.5|NECAP1|ENSG00000089818.12|NECAP endocytosis associated 1
hg19_v2_chr19_+_41222998_41223057	0.212696	UCACAGU	ENST00000263370.2|ITPKC|ENSG00000086544.2|inositol-trisphosphate 3-kinase C
hg19_v2_chr1_-_93426998_93427057	0.211162	UCACAGU	ENST00000370310.4|FAM69A|ENSG00000154511.7|family with sequence similarity 69, member A
hg19_v2_chr10_-_13570533_13570533	0.210226	UCACAGU	ENST00000396900.2|BEND7|ENSG00000165626.12|BEN domain containing 7 	ENST00000396898.2|BEND7|ENSG00000165626.12|BEN domain containing 7
hg19_v2_chr1_-_116383738_116383752	0.210204	UCACAGU	ENST00000320238.3|NHLH2|ENSG00000177551.5|nescient helix loop helix 2
hg19_v2_chr1_-_26197744_26197744	0.209618	UCACAGU	ENST00000374296.3|PAQR7|ENSG00000182749.5|progestin and adipoQ receptor family member VII
hg19_v2_chr17_+_11144580_11144740	0.208003	UCACAGU	ENST00000441885.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000432116.3|SHISA6|ENSG00000188803.10|shisa family member 6 	ENST00000409168.3|SHISA6|ENSG00000188803.10|shisa family member 6
hg19_v2_chr7_+_66386204_66386249	0.206865	UCACAGU	ENST00000341567.4|TMEM248|ENSG00000106609.12|transmembrane protein 248 	ENST00000607045.1|TMEM248|ENSG00000106609.12|transmembrane protein 248
hg19_v2_chr20_+_62795827_62795878	0.203129	UCACAGU	ENST00000328439.1|MYT1|ENSG00000196132.7|myelin transcription factor 1 	ENST00000536311.1|MYT1|ENSG00000196132.7|myelin transcription factor 1
hg19_v2_chr8_-_124286735_124286773	0.202663	UCACAGU	ENST00000395571.3|ZHX1|ENSG00000165156.10|zinc fingers and homeoboxes 1
hg19_v2_chr7_+_127881325_127881337	0.201966	UCACAGU	ENST00000308868.4|LEP|ENSG00000174697.4|leptin
hg19_v2_chr10_+_98592009_98592061	0.201247	UCACAGU	ENST00000540664.1|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor 	ENST00000371103.3|LCOR|ENSG00000196233.7|ligand dependent nuclear receptor corepressor
hg19_v2_chr15_-_27018175_27018241	0.200311	UCACAGU	ENST00000311550.5|GABRB3|ENSG00000166206.9|gamma-aminobutyric acid (GABA) A receptor, beta 3
hg19_v2_chr1_+_32930647_32930684	0.200104	UCACAGU	ENST00000609129.1|ZBTB8B|ENSG00000273274.1|zinc finger and BTB domain containing 8B
hg19_v2_chr17_+_28705921_28706000	0.199562	UCACAGU	ENST00000225719.4|CPD|ENSG00000108582.7|carboxypeptidase D
hg19_v2_chr9_-_123964114_123964210	0.198964	UCACAGU	ENST00000373840.4|RAB14|ENSG00000119396.6|RAB14, member RAS oncogene family
hg19_v2_chr4_-_107957454_107957475	0.197269	UCACAGU	ENST00000285311.3|DKK2|ENSG00000155011.4|dickkopf WNT signaling pathway inhibitor 2
hg19_v2_chr16_-_70719925_70719989	0.191498	UCACAGU	ENST00000338779.6|MTSS1L|ENSG00000132613.10|metastasis suppressor 1-like
hg19_v2_chr17_-_35969409_35969544	0.190833	UCACAGU	ENST00000394378.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585472.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000591288.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000502449.2|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000345615.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000346661.4|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000585689.1|SYNRG|ENSG00000006114.11|synergin, gamma 	ENST00000339208.6|SYNRG|ENSG00000006114.11|synergin, gamma
hg19_v2_chr11_-_94964354_94964374	0.190371	UCACAGU	ENST00000536441.1|SESN3|ENSG00000149212.6|sestrin 3
hg19_v2_chr12_-_102874416_102874425	0.190192	UCACAGU	ENST00000392904.1|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C) 	ENST00000337514.6|IGF1|ENSG00000017427.11|insulin-like growth factor 1 (somatomedin C)
hg19_v2_chr7_+_30323923_30324060	0.187081	UCACAGU	ENST00000323037.4|ZNRF2|ENSG00000180233.9|zinc and ring finger 2
hg19_v2_chr2_+_208576355_208576475	0.185445	UCACAGU	ENST00000420822.1|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000295414.3|CCNYL1|ENSG00000163249.5|cyclin Y-like 1 	ENST00000339882.5|CCNYL1|ENSG00000163249.5|cyclin Y-like 1
hg19_v2_chr2_+_148602058_148602185	0.184605	UCACAGU	ENST00000241416.7|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000535787.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA 	ENST00000404590.1|ACVR2A|ENSG00000121989.10|activin A receptor, type IIA
hg19_v2_chr4_+_134070439_134070470	0.180189	UCACAGU	ENST00000264360.5|PCDH10|ENSG00000138650.7|protocadherin 10
hg19_v2_chr3_+_107241783_107241850	0.179929	UCACAGU	ENST00000415149.2|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000402543.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000325805.8|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila) 	ENST00000427402.1|BBX|ENSG00000114439.14|bobby sox homolog (Drosophila)
hg19_v2_chr22_+_21771656_21771693	0.178695	UCACAGU	ENST00000407464.2|HIC2|ENSG00000169635.5|hypermethylated in cancer 2
hg19_v2_chr5_-_111754948_111755013	0.176704	UCACAGU	ENST00000261486.5|EPB41L4A|ENSG00000129595.8|erythrocyte membrane protein band 4.1 like 4A
hg19_v2_chr2_+_148778570_148778589	0.175693	UCACAGU	ENST00000407073.1|MBD5|ENSG00000204406.7|methyl-CpG binding domain protein 5
hg19_v2_chr3_-_39195037_39195069	0.17488	UCACAGU	ENST00000273153.5|CSRNP1|ENSG00000144655.10|cysteine-serine-rich nuclear protein 1
hg19_v2_chr10_+_104678032_104678094	0.17178	UCACAGU	ENST00000369878.4|CNNM2|ENSG00000148842.13|cyclin M2 	ENST00000369875.3|CNNM2|ENSG00000148842.13|cyclin M2
hg19_v2_chr5_+_133984462_133984514	0.171054	UCACAGU	ENST00000398844.2|SEC24A|ENSG00000113615.8|SEC24 family member A 	ENST00000322887.4|SEC24A|ENSG00000113615.8|SEC24 family member A
hg19_v2_chr1_-_155881156_155881210	0.170751	UCACAGU	ENST00000539040.1|RIT1|ENSG00000143622.6|Ras-like without CAAX 1 	ENST00000368323.3|RIT1|ENSG00000143622.6|Ras-like without CAAX 1
hg19_v2_chr4_-_89619386_89619386	0.170152	UCACAGU	ENST00000323061.5|NAP1L5|ENSG00000177432.6|nucleosome assembly protein 1-like 5
hg19_v2_chr19_+_38397839_38397932	0.169091	UCACAGU	ENST00000222345.6|SIPA1L3|ENSG00000105738.6|signal-induced proliferation-associated 1 like 3
hg19_v2_chr5_+_65440032_65440099	0.160378	UCACAGU	ENST00000334121.6|SREK1|ENSG00000153914.11|splicing regulatory glutamine/lysine-rich protein 1
hg19_v2_chr12_-_63328817_63328870	0.158779	UCACAGU	ENST00000228705.6|PPM1H|ENSG00000111110.7|protein phosphatase, Mg2+/Mn2+ dependent, 1H
hg19_v2_chr3_-_128212016_128212051	0.158589	UCACAGU	ENST00000498200.1|GATA2|ENSG00000179348.7|GATA binding protein 2 	ENST00000341105.2|GATA2|ENSG00000179348.7|GATA binding protein 2
hg19_v2_chr21_+_45138941_45139084	0.158265	UCACAGU	ENST00000398081.1|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase 	ENST00000468090.1|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase 	ENST00000291565.4|PDXK|ENSG00000160209.14|pyridoxal (pyridoxine, vitamin B6) kinase
hg19_v2_chr16_-_53737795_53737850	0.156145	UCACAGU	ENST00000262135.4|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000564374.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like 	ENST00000566096.1|RPGRIP1L|ENSG00000103494.8|RPGRIP1-like
hg19_v2_chr14_+_52734401_52734530	0.154592	UCACAGU	ENST00000306051.2|PTGDR|ENSG00000168229.3|prostaglandin D2 receptor (DP) 	ENST00000553372.1|PTGDR|ENSG00000168229.3|prostaglandin D2 receptor (DP)
hg19_v2_chr12_-_117319236_117319252	0.154034	UCACAGU	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr2_+_215275771_215275789	0.15383	UCACAGU	ENST00000312504.5|VWC2L|ENSG00000174453.5|von Willebrand factor C domain containing protein 2-like 	ENST00000427124.1|VWC2L|ENSG00000174453.5|von Willebrand factor C domain containing protein 2-like
hg19_v2_chrX_+_122993827_122993910	0.15342	UCACAGU	ENST00000371199.3|XIAP|ENSG00000101966.8|X-linked inhibitor of apoptosis
hg19_v2_chr19_-_14606900_14606955	0.151058	UCACAGU	ENST00000393029.3|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000393028.1|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000393033.4|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000345425.2|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000586027.1|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000591349.1|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1 	ENST00000587210.1|GIPC1|ENSG00000123159.11|GIPC PDZ domain containing family, member 1
hg19_v2_chr2_+_163200598_163200667	0.148559	UCACAGU	ENST00000437150.2|GCA|ENSG00000115271.6|grancalcin, EF-hand calcium binding protein 	ENST00000453113.2|GCA|ENSG00000115271.6|grancalcin, EF-hand calcium binding protein
hg19_v2_chr1_-_85725316_85725367	0.147785	UCACAGU	ENST00000344356.5|C1orf52|ENSG00000162642.9|chromosome 1 open reading frame 52 	ENST00000471115.1|C1orf52|ENSG00000162642.9|chromosome 1 open reading frame 52
hg19_v2_chr22_+_31608219_31608303	0.147713	UCACAGU	ENST00000406516.1|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000444929.2|LIMK2|ENSG00000182541.13|LIM domain kinase 2 	ENST00000331728.4|LIMK2|ENSG00000182541.13|LIM domain kinase 2
hg19_v2_chr14_+_50359773_50359850	0.144915	UCACAGU	ENST00000298316.5|ARF6|ENSG00000165527.5|ADP-ribosylation factor 6
hg19_v2_chr15_+_75550940_75550940	0.144767	UCACAGU	ENST00000300576.5|GOLGA6C|ENSG00000167195.7|golgin A6 family, member C
hg19_v2_chr13_-_49018789_49018840	0.143605	UCACAGU	ENST00000378434.4|LPAR6|ENSG00000139679.11|lysophosphatidic acid receptor 6
hg19_v2_chr10_+_22610124_22610188	0.141143	UCACAGU	ENST00000376663.3|BMI1|ENSG00000168283.9|BMI1 polycomb ring finger oncogene
hg19_v2_chr7_-_30066233_30066332	0.136171	UCACAGU	ENST00000222803.5|FKBP14|ENSG00000106080.6|FK506 binding protein 14, 22 kDa
hg19_v2_chr8_-_8751068_8751158	0.136165	UCACAGU	ENST00000276282.6|MFHAS1|ENSG00000147324.6|malignant fibrous histiocytoma amplified sequence 1
hg19_v2_chr1_-_154474589_154474589	0.134593	UCACAGU	ENST00000304760.2|SHE|ENSG00000169291.5|Src homology 2 domain containing E
hg19_v2_chr6_+_99282570_99282591	0.134339	UCACAGU	ENST00000328345.5|POU3F2|ENSG00000184486.7|POU class 3 homeobox 2
hg19_v2_chr15_+_75575176_75575176	0.133137	UCACAGU	ENST00000434739.3|GOLGA6D|ENSG00000140478.10|golgin A6 family, member D
hg19_v2_chr17_-_73179046_73179078	0.129768	UCACAGU	ENST00000314523.7|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2 	ENST00000420826.2|SUMO2|ENSG00000188612.7|small ubiquitin-like modifier 2
hg19_v2_chr13_-_84456527_84456541	0.129377	UCACAGU	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr20_+_57226284_57226345	0.128761	UCACAGU	ENST00000458280.1|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000355957.5|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000361770.5|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000312283.8|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000412911.1|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000359617.4|STX16|ENSG00000124222.17|syntaxin 16 	ENST00000371141.4|STX16|ENSG00000124222.17|syntaxin 16
hg19_v2_chr17_-_40761375_40761409	0.127945	UCACAGU	ENST00000543197.1|FAM134C|ENSG00000141699.6|family with sequence similarity 134, member C 	ENST00000309428.5|FAM134C|ENSG00000141699.6|family with sequence similarity 134, member C
hg19_v2_chr5_-_95297678_95297775	0.127579	UCACAGU	ENST00000237853.4|ELL2|ENSG00000118985.10|elongation factor, RNA polymerase II, 2
hg19_v2_chr10_-_131762105_131762105	0.127454	UCACAGU	ENST00000368648.3|EBF3|ENSG00000108001.9|early B-cell factor 3 	ENST00000355311.5|EBF3|ENSG00000108001.9|early B-cell factor 3
hg19_v2_chr9_+_129677039_129677119	0.126558	UCACAGU	ENST00000259351.5|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000424082.2|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000394022.3|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000394011.3|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1 	ENST00000319107.4|RALGPS1|ENSG00000136828.14|Ral GEF with PH domain and SH3 binding motif 1
hg19_v2_chr16_+_22019404_22019604	0.124671	UCACAGU	ENST00000542527.2|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000569656.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52 	ENST00000562695.1|C16orf52|ENSG00000185716.7|chromosome 16 open reading frame 52
hg19_v2_chr7_+_116312411_116312502	0.124468	UCACAGU	ENST00000456159.1|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000397752.3|MET|ENSG00000105976.10|met proto-oncogene 	ENST00000318493.6|MET|ENSG00000105976.10|met proto-oncogene
hg19_v2_chr15_-_75249793_75249810	0.123094	UCACAGU	ENST00000322177.5|RPP25|ENSG00000178718.5|ribonuclease P/MRP 25kDa subunit
hg19_v2_chr7_+_91875508_91875559	0.122971	UCACAGU	ENST00000265742.3|ANKIB1|ENSG00000001629.5|ankyrin repeat and IBR domain containing 1
hg19_v2_chr9_-_136242909_136242953	0.122702	UCACAGU	ENST00000371991.3|SURF4|ENSG00000148248.9|surfeit 4 	ENST00000545297.1|SURF4|ENSG00000148248.9|surfeit 4
hg19_v2_chr20_-_48729670_48729694	0.121091	UCACAGU	ENST00000371657.5|UBE2V1|ENSG00000244687.7|ubiquitin-conjugating enzyme E2 variant 1
hg19_v2_chr17_-_58603568_58603610	0.120165	UCACAGU	ENST00000083182.3|APPBP2|ENSG00000062725.5|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
hg19_v2_chr16_+_46723552_46723612	0.119796	UCACAGU	ENST00000219097.2|ORC6|ENSG00000091651.4|origin recognition complex, subunit 6 	ENST00000568364.2|ORC6|ENSG00000091651.4|origin recognition complex, subunit 6
hg19_v2_chr21_-_39288743_39288765	0.11811	UCACAGU	ENST00000609713.1|KCNJ6|ENSG00000157542.8|potassium inwardly-rectifying channel, subfamily J, member 6
hg19_v2_chr6_-_33160231_33160276	0.115412	UCACAGU	ENST00000395194.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000457788.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000341947.2|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000357486.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000374714.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000374713.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000395197.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000374712.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000361917.1|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2 	ENST00000374708.4|COL11A2|ENSG00000204248.6|collagen, type XI, alpha 2
hg19_v2_chr2_+_74881355_74881397	0.114547	UCACAGU	ENST00000357877.2|SEMA4F|ENSG00000135622.8|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F
hg19_v2_chr17_-_56595196_56595266	0.113913	UCACAGU	ENST00000579921.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000579925.1|MTMR4|ENSG00000108389.5|myotubularin related protein 4 	ENST00000323456.5|MTMR4|ENSG00000108389.5|myotubularin related protein 4
hg19_v2_chr16_+_69599861_69599887	0.113256	UCACAGU	ENST00000354436.2|NFAT5|ENSG00000102908.16|nuclear factor of activated T-cells 5, tonicity-responsive
hg19_v2_chr8_+_28351707_28351781	0.111644	UCACAGU	ENST00000537916.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000523546.1|FZD3|ENSG00000104290.6|frizzled family receptor 3 	ENST00000240093.3|FZD3|ENSG00000104290.6|frizzled family receptor 3
hg19_v2_chr1_-_39347255_39347303	0.109527	UCACAGU	ENST00000454994.2|GJA9|ENSG00000131233.8|gap junction protein, alpha 9, 59kDa 	ENST00000357771.3|GJA9|ENSG00000131233.8|gap junction protein, alpha 9, 59kDa
hg19_v2_chr14_+_103243813_103243955	0.108122	UCACAGU	ENST00000560371.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000347662.4|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000392745.2|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000539721.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3 	ENST00000560463.1|TRAF3|ENSG00000131323.10|TNF receptor-associated factor 3
hg19_v2_chr2_-_38303218_38303323	0.107347	UCACAGU	ENST00000407341.1|CYP1B1|ENSG00000138061.7|cytochrome P450, family 1, subfamily B, polypeptide 1 	ENST00000260630.3|CYP1B1|ENSG00000138061.7|cytochrome P450, family 1, subfamily B, polypeptide 1
hg19_v2_chrX_+_56259316_56259480	0.106398	UCACAGU	ENST00000468660.1|KLF8|ENSG00000102349.10|Kruppel-like factor 8
hg19_v2_chr21_-_43346790_43346823	0.105912	UCACAGU	ENST00000329623.7|C2CD2|ENSG00000157617.12|C2 calcium-dependent domain containing 2
hg19_v2_chr2_+_155554797_155554837	0.105022	UCACAGU	ENST00000295101.2|KCNJ3|ENSG00000162989.3|potassium inwardly-rectifying channel, subfamily J, member 3
hg19_v2_chr9_-_126030817_126030906	0.104577	UCACAGU	ENST00000348403.5|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000447404.2|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein 	ENST00000360998.3|STRBP|ENSG00000165209.14|spermatid perinuclear RNA binding protein
hg19_v2_chr20_+_60718785_60718853	0.104495	UCACAGU	ENST00000421564.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000450482.1|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1 	ENST00000331758.3|SS18L1|ENSG00000184402.10|synovial sarcoma translocation gene on chromosome 18-like 1
hg19_v2_chr16_-_66730583_66730689	0.103298	UCACAGU	ENST00000330687.4|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000394106.2|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4 	ENST00000563952.1|CMTM4|ENSG00000183723.8|CKLF-like MARVEL transmembrane domain containing 4
hg19_v2_chr16_-_75498553_75498635	0.101453	UCACAGU	ENST00000569276.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000357613.4|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000561878.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A 	ENST00000567194.1|RP11-77K12.1|ENSG00000261717.1|Uncharacterized protein  	ENST00000566980.1|TMEM170A|ENSG00000166822.8|transmembrane protein 170A
hg19_v2_chr7_+_155250824_155250824	0.100944	UCACAGU	ENST00000297375.4|EN2|ENSG00000164778.4|engrailed homeobox 2
hg19_v2_chr2_-_24149977_24150007	0.100793	UCACAGU	ENST00000238789.5|ATAD2B|ENSG00000119778.10|ATPase family, AAA domain containing 2B
hg19_v2_chr7_+_45039783_45039821	0.100586	UCACAGU	ENST00000258781.6|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000541586.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2 	ENST00000544363.1|CCM2|ENSG00000136280.11|cerebral cavernous malformation 2
hg19_v2_chr10_+_70320413_70320413	0.100345	UCACAGU	ENST00000373644.4|TET1|ENSG00000138336.8|tet methylcytosine dioxygenase 1
hg19_v2_chr12_+_65004292_65004306	0.0999264	UCACAGU	ENST00000542104.1|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3 	ENST00000336061.2|RASSF3|ENSG00000153179.7|Ras association (RalGDS/AF-6) domain family member 3
hg19_v2_chr15_+_84904525_84904525	0.0976024	UCACAGU	ENST00000510439.2|GOLGA6L4|ENSG00000184206.7|golgin A6 family-like 4
hg19_v2_chr20_+_35807449_35807503	0.0960507	UCACAGU	ENST00000237530.6|RPN2|ENSG00000118705.12|ribophorin II
hg19_v2_chr6_+_170863421_170863484	0.0956835	UCACAGU	ENST00000392092.2|TBP|ENSG00000112592.8|TATA box binding protein 	ENST00000540980.1|TBP|ENSG00000112592.8|TATA box binding protein 	ENST00000230354.6|TBP|ENSG00000112592.8|TATA box binding protein
hg19_v2_chr7_-_141401951_141401985	0.0952524	UCACAGU	ENST00000536163.1|KIAA1147|ENSG00000257093.2|KIAA1147
hg19_v2_chr2_+_201676256_201676323	0.0950449	UCACAGU	ENST00000452206.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000410110.2|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1 	ENST00000409600.1|BZW1|ENSG00000082153.13|basic leucine zipper and W2 domains 1
hg19_v2_chr17_-_7137857_7137869	0.0948893	UCACAGU	ENST00000005340.5|DVL2|ENSG00000004975.7|dishevelled segment polarity protein 2
hg19_v2_chr5_+_52083730_52083821	0.0945884	UCACAGU	ENST00000282588.6|ITGA1|ENSG00000213949.4|integrin, alpha 1 	ENST00000274311.2|PELO|ENSG00000152684.10|pelota homolog (Drosophila)
hg19_v2_chr3_-_24536253_24536328	0.0940407	UCACAGU	ENST00000428492.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000396671.2|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000431815.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000418247.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000416420.1|THRB|ENSG00000151090.13|thyroid hormone receptor, beta 	ENST00000356447.4|THRB|ENSG00000151090.13|thyroid hormone receptor, beta
hg19_v2_chr1_+_28586006_28586044	0.0931687	UCACAGU	ENST00000253063.3|SESN2|ENSG00000130766.4|sestrin 2
hg19_v2_chr8_-_81787006_81787031	0.0904624	UCACAGU	ENST00000327835.3|ZNF704|ENSG00000164684.9|zinc finger protein 704
hg19_v2_chr11_-_27528301_27528336	0.0900251	UCACAGU	ENST00000524596.1|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans) 	ENST00000278193.2|LIN7C|ENSG00000148943.7|lin-7 homolog C (C. elegans)
hg19_v2_chr17_+_30813576_30813637	0.0895844	UCACAGU	ENST00000313401.3|CDK5R1|ENSG00000176749.4|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
hg19_v2_chr16_-_11680791_11680813	0.087219	UCACAGU	ENST00000571976.1|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor 	ENST00000413364.2|LITAF|ENSG00000189067.8|lipopolysaccharide-induced TNF factor
hg19_v2_chr2_+_210636697_210636763	0.0860549	UCACAGU	ENST00000439458.1|UNC80|ENSG00000144406.14|unc-80 homolog (C. elegans) 	ENST00000272845.6|UNC80|ENSG00000144406.14|unc-80 homolog (C. elegans)
hg19_v2_chr12_+_3600356_3600406	0.084919	UCACAGU	ENST00000382622.3|PRMT8|ENSG00000111218.7|protein arginine methyltransferase 8
hg19_v2_chr15_-_85201779_85201794	0.0840193	UCACAGU	ENST00000360476.3|NMB|ENSG00000197696.5|neuromedin B 	ENST00000394588.3|NMB|ENSG00000197696.5|neuromedin B
hg19_v2_chr12_+_83080659_83080693	0.0838644	UCACAGU	ENST00000321196.3|TMTC2|ENSG00000179104.4|transmembrane and tetratricopeptide repeat containing 2
hg19_v2_chr1_-_78444776_78444800	0.0826013	UCACAGU	ENST00000370767.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1 	ENST00000421641.1|FUBP1|ENSG00000162613.12|far upstream element (FUSE) binding protein 1
hg19_v2_chr11_-_62572901_62572964	0.082469	UCACAGU	ENST00000439713.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531131.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000530875.1|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000531709.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1 	ENST00000294172.2|NXF1|ENSG00000162231.9|nuclear RNA export factor 1
hg19_v2_chr11_-_102323489_102323576	0.0822269	UCACAGU	ENST00000361236.3|TMEM123|ENSG00000152558.10|transmembrane protein 123
hg19_v2_chr12_-_123450986_123451056	0.0821916	UCACAGU	ENST00000344275.7|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000442833.2|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000280560.8|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000540285.1|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9 	ENST00000346530.5|ABCB9|ENSG00000150967.13|ATP-binding cassette, sub-family B (MDR/TAP), member 9
hg19_v2_chr8_+_1922024_1922069	0.0813107	UCACAGU	ENST00000320248.3|KBTBD11|ENSG00000176595.3|kelch repeat and BTB (POZ) domain containing 11
hg19_v2_chr12_-_117175819_117175887	0.0791451	UCACAGU	ENST00000261318.3|C12orf49|ENSG00000111412.4|chromosome 12 open reading frame 49 	ENST00000536380.1|C12orf49|ENSG00000111412.4|chromosome 12 open reading frame 49
hg19_v2_chr12_+_54366894_54366922	0.0779536	UCACAGU	ENST00000546378.1|HOXC11|ENSG00000123388.4|homeobox C11 	ENST00000243082.4|HOXC11|ENSG00000123388.4|homeobox C11
hg19_v2_chr8_-_28243934_28243993	0.0769971	UCACAGU	ENST00000521185.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000520290.1|ZNF395|ENSG00000186918.9|zinc finger protein 395 	ENST00000344423.5|ZNF395|ENSG00000186918.9|zinc finger protein 395
hg19_v2_chr20_-_48532019_48532045	0.0762349	UCACAGU	ENST00000289431.5|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr7_-_28220354_28220441	0.0744012	UCACAGU	ENST00000283928.5|JAZF1|ENSG00000153814.7|JAZF zinc finger 1
hg19_v2_chr10_-_119806085_119806114	0.0741707	UCACAGU	ENST00000355624.3|RAB11FIP2|ENSG00000107560.6|RAB11 family interacting protein 2 (class I)
hg19_v2_chr14_+_70078303_70078321	0.0732886	UCACAGU	ENST00000342745.4|KIAA0247|ENSG00000100647.7|KIAA0247
hg19_v2_chr8_+_28747884_28747938	0.0724124	UCACAGU	ENST00000287701.10|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000444075.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000403668.2|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000519662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000558662.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000523613.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000560599.1|HMBOX1|ENSG00000147421.13|homeobox containing 1 	ENST00000397358.3|HMBOX1|ENSG00000147421.13|homeobox containing 1
hg19_v2_chr8_+_85097110_85097186	0.0722693	UCACAGU	ENST00000517638.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like 	ENST00000522647.1|RALYL|ENSG00000184672.7|RALY RNA binding protein-like
hg19_v2_chrX_+_72783026_72783049	0.0714035	UCACAGU	ENST00000373504.6|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1 	ENST00000373502.5|CHIC1|ENSG00000204116.7|cysteine-rich hydrophobic domain 1
hg19_v2_chr3_+_53195136_53195240	0.0695827	UCACAGU	ENST00000394729.2|PRKCD|ENSG00000163932.9|protein kinase C, delta 	ENST00000330452.3|PRKCD|ENSG00000163932.9|protein kinase C, delta
hg19_v2_chr11_+_77300669_77300714	0.0690871	UCACAGU	ENST00000313578.3|AQP11|ENSG00000178301.3|aquaporin 11
hg19_v2_chr12_-_81331697_81331733	0.0671749	UCACAGU	ENST00000552864.1|LIN7A|ENSG00000111052.3|lin-7 homolog A (C. elegans)
hg19_v2_chr12_-_54813229_54813273	0.0648855	UCACAGU	ENST00000293379.4|ITGA5|ENSG00000161638.6|integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
hg19_v2_chr16_-_70472946_70473024	0.0648707	UCACAGU	ENST00000342907.2|ST3GAL2|ENSG00000157350.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
hg19_v2_chr12_-_105478339_105478361	0.0644277	UCACAGU	ENST00000424857.2|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2 	ENST00000258494.9|ALDH1L2|ENSG00000136010.9|aldehyde dehydrogenase 1 family, member L2
hg19_v2_chr12_+_60083118_60083157	0.0641207	UCACAGU	ENST00000261187.4|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000543448.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr6_-_89673280_89673349	0.0639862	UCACAGU	ENST00000369475.3|RNGTT|ENSG00000111880.11|RNA guanylyltransferase and 5'-phosphatase 	ENST00000369485.4|RNGTT|ENSG00000111880.11|RNA guanylyltransferase and 5'-phosphatase 	ENST00000538899.1|RNGTT|ENSG00000111880.11|RNA guanylyltransferase and 5'-phosphatase 	ENST00000265607.6|RNGTT|ENSG00000111880.11|RNA guanylyltransferase and 5'-phosphatase
hg19_v2_chr12_-_82153087_82153138	0.0625422	UCACAGU	ENST00000547623.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENST00000549396.1|PPFIA2|ENSG00000139220.12|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
hg19_v2_chr13_+_108870714_108870780	0.0620331	UCACAGU	ENST00000375898.3|ABHD13|ENSG00000139826.5|abhydrolase domain containing 13
hg19_v2_chr8_-_57123815_57123867	0.0613078	UCACAGU	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr13_-_100624012_100624163	0.0610318	UCACAGU	ENST00000267294.4|ZIC5|ENSG00000139800.8|Zic family member 5
hg19_v2_chr1_+_89990431_89990493	0.0597999	UCACAGU	ENST00000330947.2|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B 	ENST00000358200.4|LRRC8B|ENSG00000197147.8|leucine rich repeat containing 8 family, member B
hg19_v2_chr12_+_132195617_132195682	0.0570933	UCACAGU	ENST00000261674.4|SFSWAP|ENSG00000061936.5|splicing factor, suppressor of white-apricot homolog (Drosophila) 	ENST00000535236.1|SFSWAP|ENSG00000061936.5|splicing factor, suppressor of white-apricot homolog (Drosophila) 	ENST00000541286.1|SFSWAP|ENSG00000061936.5|splicing factor, suppressor of white-apricot homolog (Drosophila)
hg19_v2_chr7_+_30174426_30174441	0.0568048	UCACAGU	ENST00000324453.8|C7orf41|ENSG00000180354.11|maturin, neural progenitor differentiation regulator homolog (Xenopus)
hg19_v2_chr2_-_128643496_128643496	0.0567229	UCACAGU	ENST00000272647.5|AMMECR1L|ENSG00000144233.5|AMMECR1-like
hg19_v2_chr19_+_7968728_7968781	0.0562634	UCACAGU	ENST00000397981.3|MAP2K7|ENSG00000076984.13|mitogen-activated protein kinase kinase 7 	ENST00000545011.1|MAP2K7|ENSG00000076984.13|mitogen-activated protein kinase kinase 7 	ENST00000397983.3|MAP2K7|ENSG00000076984.13|mitogen-activated protein kinase kinase 7 	ENST00000397979.3|MAP2K7|ENSG00000076984.13|mitogen-activated protein kinase kinase 7
hg19_v2_chr12_+_19592602_19592648	0.0560514	UCACAGU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chrX_-_73834449_73834481	0.0523212	UCACAGU	ENST00000332687.6|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting 	ENST00000349225.2|RLIM|ENSG00000131263.8|ring finger protein, LIM domain interacting
hg19_v2_chr2_-_176032843_176032941	0.0506465	UCACAGU	ENST00000392544.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409499.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000426833.3|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000392543.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000538946.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000487334.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409833.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000409635.1|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000264110.2|ATF2|ENSG00000115966.12|activating transcription factor 2 	ENST00000345739.5|ATF2|ENSG00000115966.12|activating transcription factor 2
hg19_v2_chr11_-_118927816_118927868	0.0488538	UCACAGU	ENST00000534233.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532752.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000525859.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000404233.3|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000532421.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000543287.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000527310.2|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1 	ENST00000529972.1|HYOU1|ENSG00000149428.14|hypoxia up-regulated 1
hg19_v2_chr7_+_114055052_114055378	0.0479984	UCACAGU	ENST00000462331.1|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000408937.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000403559.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000350908.4|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393498.2|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393495.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000378237.3|FOXP2|ENSG00000128573.18|forkhead box P2 	ENST00000393489.3|FOXP2|ENSG00000128573.18|forkhead box P2
hg19_v2_chr2_+_24714729_24714927	0.0476279	UCACAGU	ENST00000406961.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1 	ENST00000405141.1|NCOA1|ENSG00000084676.11|nuclear receptor coactivator 1
hg19_v2_chr15_-_34502278_34502318	0.0472844	UCACAGU	ENST00000559515.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000256544.3|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000560108.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1 	ENST00000559462.1|KATNBL1|ENSG00000134152.6|katanin p80 subunit B-like 1
hg19_v2_chr10_+_97803151_97803348	0.0464672	UCACAGU	ENST00000403870.3|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000265992.5|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000465148.2|CCNJ|ENSG00000107443.11|cyclin J 	ENST00000534974.1|CCNJ|ENSG00000107443.11|cyclin J
hg19_v2_chr11_+_109292846_109292875	0.0463084	UCACAGU	ENST00000327419.6|C11orf87|ENSG00000185742.6|chromosome 11 open reading frame 87
hg19_v2_chr4_+_71587669_71587752	0.040958	UCACAGU	ENST00000381006.3|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3 	ENST00000226328.4|RUFY3|ENSG00000018189.8|RUN and FYVE domain containing 3
hg19_v2_chr9_+_129622904_129622956	0.0382238	UCACAGU	ENST00000319119.4|ZBTB34|ENSG00000177125.5|zinc finger and BTB domain containing 34
hg19_v2_chr15_+_40733387_40733416	0.0380958	UCACAGU	ENST00000416165.1|BAHD1|ENSG00000140320.7|bromo adjacent homology domain containing 1
hg19_v2_chr9_+_101867359_101867376	0.0366794	UCACAGU	ENST00000374994.4|TGFBR1|ENSG00000106799.8|transforming growth factor, beta receptor 1
hg19_v2_chr12_-_57400227_57400245	0.0360764	UCACAGU	ENST00000300101.2|ZBTB39|ENSG00000166860.2|zinc finger and BTB domain containing 39
hg19_v2_chr12_-_95611149_95611249	0.0352995	UCACAGU	ENST00000549499.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000343958.4|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6 	ENST00000546711.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr6_+_170102210_170102275	0.0352527	UCACAGU	ENST00000439249.1|C6orf120|ENSG00000185127.5|chromosome 6 open reading frame 120 	ENST00000332290.2|C6orf120|ENSG00000185127.5|chromosome 6 open reading frame 120
hg19_v2_chr17_-_62658186_62658231	0.0349645	UCACAGU	ENST00000262435.9|SMURF2|ENSG00000108854.11|SMAD specific E3 ubiquitin protein ligase 2
hg19_v2_chr18_+_9136758_9136852	0.034795	UCACAGU	ENST00000383440.2|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000262126.4|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12 	ENST00000577992.1|ANKRD12|ENSG00000101745.11|ankyrin repeat domain 12
hg19_v2_chr11_-_57298187_57298276	0.0343606	UCACAGU	ENST00000525158.1|TIMM10|ENSG00000134809.4|translocase of inner mitochondrial membrane 10 homolog (yeast) 	ENST00000257245.4|TIMM10|ENSG00000134809.4|translocase of inner mitochondrial membrane 10 homolog (yeast) 	ENST00000525587.1|TIMM10|ENSG00000134809.4|translocase of inner mitochondrial membrane 10 homolog (yeast)
hg19_v2_chr1_-_33502441_33502500	0.0339633	UCACAGU	ENST00000548033.1|AK2|ENSG00000004455.12|adenylate kinase 2 	ENST00000487289.1|AK2|ENSG00000004455.12|adenylate kinase 2 	ENST00000373449.2|AK2|ENSG00000004455.12|adenylate kinase 2 	ENST00000480134.1|AK2|ENSG00000004455.12|adenylate kinase 2 	ENST00000467905.1|AK2|ENSG00000004455.12|adenylate kinase 2
hg19_v2_chr1_+_64239657_64239724	0.0302419	UCACAGU	ENST00000371080.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1 	ENST00000371079.1|ROR1|ENSG00000185483.7|receptor tyrosine kinase-like orphan receptor 1
hg19_v2_chr16_-_1464688_1464752	0.0279556	UCACAGU	ENST00000389221.4|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000508903.2|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000397462.1|UNKL|ENSG00000059145.14|unkempt family zinc finger-like 	ENST00000301712.5|UNKL|ENSG00000059145.14|unkempt family zinc finger-like
hg19_v2_chr2_+_169757750_169757835	0.0276846	UCACAGU	ENST00000375363.3|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000429379.2|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000421979.1|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2
hg19_v2_chr1_+_113933581_113933611	0.0254026	UCACAGU	ENST00000307546.9|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3 	ENST00000369615.1|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3 	ENST00000369611.4|MAGI3|ENSG00000081026.14|membrane associated guanylate kinase, WW and PDZ domain containing 3
hg19_v2_chr1_+_76540386_76540445	0.0241707	UCACAGU	ENST00000328299.3|ST6GALNAC3|ENSG00000184005.9|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
hg19_v2_chr5_+_112312416_112312440	0.0234168	UCACAGU	ENST00000389063.2|DCP2|ENSG00000172795.11|decapping mRNA 2
hg19_v2_chr11_-_60674037_60674079	0.02261	UCACAGU	ENST00000541371.1|PRPF19|ENSG00000110107.4|pre-mRNA processing factor 19 	ENST00000227524.4|PRPF19|ENSG00000110107.4|pre-mRNA processing factor 19
hg19_v2_chr7_+_74072011_74072119	0.0222587	UCACAGU	ENST00000324896.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000353920.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000346152.4|GTF2I|ENSG00000077809.8|general transcription factor IIi 	ENST00000416070.1|GTF2I|ENSG00000077809.8|general transcription factor IIi
hg19_v2_chr6_+_43968306_43968377	0.0218212	UCACAGU	ENST00000442114.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000336600.5|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223 	ENST00000439969.2|C6orf223|ENSG00000181577.11|chromosome 6 open reading frame 223
hg19_v2_chr1_+_16693578_16693760	0.0214361	UCACAGU	ENST00000401088.4|SZRD1|ENSG00000055070.12|SUZ RNA binding domain containing 1 	ENST00000471507.1|SZRD1|ENSG00000055070.12|SUZ RNA binding domain containing 1 	ENST00000401089.3|SZRD1|ENSG00000055070.12|SUZ RNA binding domain containing 1 	ENST00000375590.3|SZRD1|ENSG00000055070.12|SUZ RNA binding domain containing 1 	ENST00000492354.1|SZRD1|ENSG00000055070.12|SUZ RNA binding domain containing 1
hg19_v2_chr17_-_56084578_56084707	0.0209178	UCACAGU	ENST00000582730.2|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000584773.1|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000585096.1|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1 	ENST00000258962.4|SRSF1|ENSG00000136450.8|serine/arginine-rich splicing factor 1
hg19_v2_chr1_-_93645818_93645918	0.0204544	UCACAGU	ENST00000370280.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5 	ENST00000479918.1|TMED5|ENSG00000117500.8|transmembrane emp24 protein transport domain containing 5
hg19_v2_chr19_+_18794470_18794512	0.0204333	UCACAGU	ENST00000321949.8|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1 	ENST00000338797.6|CRTC1|ENSG00000105662.11|CREB regulated transcription coactivator 1
hg19_v2_chr2_-_216003127_216003282	0.0204147	UCACAGU	ENST00000412081.1|ABCA12|ENSG00000144452.10|ATP-binding cassette, sub-family A (ABC1), member 12 	ENST00000272895.7|ABCA12|ENSG00000144452.10|ATP-binding cassette, sub-family A (ABC1), member 12
hg19_v2_chr15_-_49255632_49255650	0.0190225	UCACAGU	ENST00000332408.4|SHC4|ENSG00000185634.7|SHC (Src homology 2 domain containing) family, member 4
hg19_v2_chr8_-_74791051_74791145	0.0174221	UCACAGU	ENST00000453587.2|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602969.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000602593.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000419880.3|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative) 	ENST00000517608.1|UBE2W|ENSG00000104343.15|ubiquitin-conjugating enzyme E2W (putative)
hg19_v2_chr9_-_3525968_3526016	0.0141723	UCACAGU	ENST00000382004.3|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000302303.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression) 	ENST00000449190.1|RFX3|ENSG00000080298.11|regulatory factor X, 3 (influences HLA class II expression)
hg19_v2_chr1_+_171454659_171454723	0.013683	UCACAGU	ENST00000367742.3|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C 	ENST00000338920.4|PRRC2C|ENSG00000117523.11|proline-rich coiled-coil 2C
hg19_v2_chr5_-_89825328_89825422	0.0134643	UCACAGU	ENST00000500869.2|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000315948.6|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3 	ENST00000509384.1|LYSMD3|ENSG00000176018.8|LysM, putative peptidoglycan-binding, domain containing 3
hg19_v2_chr15_-_74374891_74374891	0.0134464	UCACAGU	ENST00000290438.3|GOLGA6A|ENSG00000159289.6|golgin A6 family, member A
hg19_v2_chr11_+_118307179_118307228	0.0134375	UCACAGU	ENST00000534358.1|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000531904.2|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000389506.5|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A 	ENST00000354520.4|KMT2A|ENSG00000118058.16|lysine (K)-specific methyltransferase 2A
hg19_v2_chr10_+_72575643_72575753	0.0111397	UCACAGU	ENST00000373202.3|SGPL1|ENSG00000166224.12|sphingosine-1-phosphate lyase 1
hg19_v2_chr12_-_31945172_31945178	0.00956313	UCACAGU	ENST00000340398.3|H3F3C|ENSG00000188375.3|H3 histone, family 3C
hg19_v2_chr5_-_111093406_111093458	0.00803751	UCACAGU	ENST00000379671.3|NREP|ENSG00000134986.9|neuronal regeneration related protein
hg19_v2_chr7_-_105029329_105029376	0.00796239	UCACAGU	ENST00000393651.3|SRPK2|ENSG00000135250.12|SRSF protein kinase 2 	ENST00000460391.1|SRPK2|ENSG00000135250.12|SRSF protein kinase 2
hg19_v2_chr10_+_18549645_18549698	0.00710494	UCACAGU	ENST00000396576.2|CACNB2|ENSG00000165995.14|calcium channel, voltage-dependent, beta 2 subunit
hg19_v2_chr4_+_79697495_79697538	0.00586945	UCACAGU	ENST00000502871.1|BMP2K|ENSG00000138756.13|BMP2 inducible kinase 	ENST00000335016.5|BMP2K|ENSG00000138756.13|BMP2 inducible kinase
hg19_v2_chr19_+_2164126_2164168	0.00557441	UCACAGU	ENST00000398665.3|DOT1L|ENSG00000104885.13|DOT1-like histone H3K79 methyltransferase
hg19_v2_chr17_-_4167142_4167281	0.00532795	UCACAGU	ENST00000570535.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000574367.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000341657.4|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1 	ENST00000433651.1|ANKFY1|ENSG00000185722.12|ankyrin repeat and FYVE domain containing 1
hg19_v2_chr1_-_225840747_225840860	0.00522533	UCACAGU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr13_+_26828275_26828312	0.00496877	UCACAGU	ENST00000381527.3|CDK8|ENSG00000132964.7|cyclin-dependent kinase 8
hg19_v2_chr9_-_23821273_23821313	0.00453893	UCACAGU	ENST00000380110.4|ELAVL2|ENSG00000107105.10|ELAV like neuron-specific RNA binding protein 2
hg19_v2_chr6_-_8064567_8064652	0.00357096	UCACAGU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr3_+_169684553_169684616	0.00175062	UCACAGU	ENST00000337002.4|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae) 	ENST00000480708.1|SEC62|ENSG00000008952.12|SEC62 homolog (S. cerevisiae)
hg19_v2_chr4_-_16228120_16228164	0.00111817	UCACAGU	ENST00000405303.2|TAPT1|ENSG00000169762.12|transmembrane anterior posterior transformation 1
