averaged GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Averaging sample configuration
Sample | Condition |
---|---|
GNF_1_721_B_lymphoblasts | 721_B_lymphoblasts |
GNF_1_ADIPOCYTE | ADIPOCYTE |
GNF_1_AdrenalCortex | AdrenalCortex |
GNF_1_adrenalgland | adrenalgland |
GNF_1_Amygdala | Amygdala |
GNF_1_Appendix | Appendix |
GNF_1_atrioventricularnode | atrioventricularnode |
GNF_1_BM.CD105.Endothelial | BM-CD105+Endothelial |
GNF_1_BM.CD33.Myeloid | BM-CD33+Myeloid |
GNF_1_BM.CD34. | BM-CD34+ |
GNF_1_BM.CD71.EarlyErythroid | BM-CD71+EarlyErythroid |
GNF_1_bonemarrow | bonemarrow |
GNF_1_bronchialepithelialcells | bronchialepithelialcells |
GNF_1_CardiacMyocytes | CardiacMyocytes |
GNF_1_caudatenucleus | caudatenucleus |
GNF_1_cerebellum | cerebellum |
GNF_1_CerebellumPeduncles | CerebellumPeduncles |
GNF_1_ciliaryganglion | ciliaryganglion |
GNF_1_CingulateCortex | CingulateCortex |
GNF_1_ColorectalAdenocarcinoma | ColorectalAdenocarcinoma |
GNF_1_DRG | DRG |
GNF_1_fetalbrain | fetalbrain |
GNF_1_fetalliver | fetalliver |
GNF_1_fetallung | fetallung |
GNF_1_fetalThyroid | fetalThyroid |
GNF_1_globuspallidus | globuspallidus |
GNF_1_Heart | Heart |
GNF_1_Hypothalamus | Hypothalamus |
GNF_1_kidney | kidney |
GNF_1_leukemiachronicmyelogenous.k562. | leukemiachronicmyelogenous(k562) |
GNF_1_leukemialymphoblastic.molt4. | leukemialymphoblastic(molt4) |
GNF_1_leukemiapromyelocytic.hl60. | leukemiapromyelocytic(hl60) |
GNF_1_Liver | Liver |
GNF_1_Lung | Lung |
GNF_1_lymphnode | lymphnode |
GNF_1_lymphomaburkittsDaudi | lymphomaburkittsDaudi |
GNF_1_lymphomaburkittsRaji | lymphomaburkittsRaji |
GNF_1_MedullaOblongata | MedullaOblongata |
GNF_1_OccipitalLobe | OccipitalLobe |
GNF_1_OlfactoryBulb | OlfactoryBulb |
GNF_1_Ovary | Ovary |
GNF_1_Pancreas | Pancreas |
GNF_1_PancreaticIslets | PancreaticIslets |
GNF_1_ParietalLobe | ParietalLobe |
GNF_1_PB.BDCA4.Dentritic_Cells | PB-BDCA4+Dentritic_Cells |
GNF_1_PB.CD14.Monocytes | PB-CD14+Monocytes |
GNF_1_PB.CD19.Bcells | PB-CD19+Bcells |
GNF_1_PB.CD4.Tcells | PB-CD4+Tcells |
GNF_1_PB.CD56.NKCells | PB-CD56+NKCells |
GNF_1_PB.CD8.Tcells | PB-CD8+Tcells |
GNF_1_Pituitary | Pituitary |
GNF_1_PLACENTA | PLACENTA |
GNF_1_Pons | Pons |
GNF_1_PrefrontalCortex | PrefrontalCortex |
GNF_1_Prostate | Prostate |
GNF_1_salivarygland | salivarygland |
GNF_1_SkeletalMuscle | SkeletalMuscle |
GNF_1_skin | skin |
GNF_1_SmoothMuscle | SmoothMuscle |
GNF_1_spinalcord | spinalcord |
GNF_1_subthalamicnucleus | subthalamicnucleus |
GNF_1_SuperiorCervicalGanglion | SuperiorCervicalGanglion |
GNF_1_TemporalLobe | TemporalLobe |
GNF_1_testis | testis |
GNF_1_TestisGermCell | TestisGermCell |
GNF_1_TestisInterstitial | TestisInterstitial |
GNF_1_TestisLeydigCell | TestisLeydigCell |
GNF_1_TestisSeminiferousTubule | TestisSeminiferousTubule |
GNF_1_Thalamus | Thalamus |
GNF_1_thymus | thymus |
GNF_1_Thyroid | Thyroid |
GNF_1_TONGUE | TONGUE |
GNF_1_Tonsil | Tonsil |
GNF_1_trachea | trachea |
GNF_1_TrigeminalGanglion | TrigeminalGanglion |
GNF_1_Uterus | Uterus |
GNF_1_UterusCorpus | UterusCorpus |
GNF_1_WHOLEBLOOD | WHOLEBLOOD |
GNF_1_WholeBrain | WholeBrain |
GNF_2_721_B_lymphoblasts | 721_B_lymphoblasts |
GNF_2_ADIPOCYTE | ADIPOCYTE |
GNF_2_AdrenalCortex | AdrenalCortex |
GNF_2_adrenalgland | adrenalgland |
GNF_2_Amygdala | Amygdala |
GNF_2_Appendix | Appendix |
GNF_2_atrioventricularnode | atrioventricularnode |
GNF_2_BM.CD105.Endothelial | BM-CD105+Endothelial |
GNF_2_BM.CD33.Myeloid | BM-CD33+Myeloid |
GNF_2_BM.CD34. | BM-CD34+ |
GNF_2_BM.CD71.EarlyErythroid | BM-CD71+EarlyErythroid |
GNF_2_bonemarrow | bonemarrow |
GNF_2_bronchialepithelialcells | bronchialepithelialcells |
GNF_2_CardiacMyocytes | CardiacMyocytes |
GNF_2_caudatenucleus | caudatenucleus |
GNF_2_cerebellum | cerebellum |
GNF_2_CerebellumPeduncles | CerebellumPeduncles |
GNF_2_ciliaryganglion | ciliaryganglion |
GNF_2_CingulateCortex | CingulateCortex |
GNF_2_ColorectalAdenocarcinoma | ColorectalAdenocarcinoma |
GNF_2_DRG | DRG |
GNF_2_fetalbrain | fetalbrain |
GNF_2_fetalliver | fetalliver |
GNF_2_fetallung | fetallung |
GNF_2_fetalThyroid | fetalThyroid |
GNF_2_globuspallidus | globuspallidus |
GNF_2_Heart | Heart |
GNF_2_Hypothalamus | Hypothalamus |
GNF_2_kidney | kidney |
GNF_2_leukemiachronicmyelogenous.k562. | leukemiachronicmyelogenous(k562) |
GNF_2_leukemialymphoblastic.molt4. | leukemialymphoblastic(molt4) |
GNF_2_leukemiapromyelocytic.hl60. | leukemiapromyelocytic(hl60) |
GNF_2_Liver | Liver |
GNF_2_Lung | Lung |
GNF_2_lymphnode | lymphnode |
GNF_2_lymphomaburkittsDaudi | lymphomaburkittsDaudi |
GNF_2_lymphomaburkittsRaji | lymphomaburkittsRaji |
GNF_2_MedullaOblongata | MedullaOblongata |
GNF_2_OccipitalLobe | OccipitalLobe |
GNF_2_OlfactoryBulb | OlfactoryBulb |
GNF_2_Ovary | Ovary |
GNF_2_Pancreas | Pancreas |
GNF_2_PancreaticIslets | PancreaticIslets |
GNF_2_ParietalLobe | ParietalLobe |
GNF_2_PB.BDCA4.Dentritic_Cells | PB-BDCA4+Dentritic_Cells |
GNF_2_PB.CD14.Monocytes | PB-CD14+Monocytes |
GNF_2_PB.CD19.Bcells | PB-CD19+Bcells |
GNF_2_PB.CD4.Tcells | PB-CD4+Tcells |
GNF_2_PB.CD56.NKCells | PB-CD56+NKCells |
GNF_2_PB.CD8.Tcells | PB-CD8+Tcells |
GNF_2_Pituitary | Pituitary |
GNF_2_PLACENTA | PLACENTA |
GNF_2_Pons | Pons |
GNF_2_PrefrontalCortex | PrefrontalCortex |
GNF_2_Prostate | Prostate |
GNF_2_salivarygland | salivarygland |
GNF_2_SkeletalMuscle | SkeletalMuscle |
GNF_2_skin | skin |
GNF_2_SmoothMuscle | SmoothMuscle |
GNF_2_spinalcord | spinalcord |
GNF_2_subthalamicnucleus | subthalamicnucleus |
GNF_2_SuperiorCervicalGanglion | SuperiorCervicalGanglion |
GNF_2_TemporalLobe | TemporalLobe |
GNF_2_testis | testis |
GNF_2_TestisGermCell | TestisGermCell |
GNF_2_TestisInterstitial | TestisInterstitial |
GNF_2_TestisLeydigCell | TestisLeydigCell |
GNF_2_TestisSeminiferousTubule | TestisSeminiferousTubule |
GNF_2_Thalamus | Thalamus |
GNF_2_thymus | thymus |
GNF_2_Thyroid | Thyroid |
GNF_2_TONGUE | TONGUE |
GNF_2_Tonsil | Tonsil |
GNF_2_trachea | trachea |
GNF_2_TrigeminalGanglion | TrigeminalGanglion |
GNF_2_Uterus | Uterus |
GNF_2_UterusCorpus | UterusCorpus |
GNF_2_WHOLEBLOOD | WHOLEBLOOD |
GNF_2_WholeBrain | WholeBrain |
NCI60_1_786.0 | NCI60_1_786-0 |
NCI60_1_A498 | NCI60_1_A498 |
NCI60_1_A549_ATCC | NCI60_1_A549_ATCC |
NCI60_1_ACHN | NCI60_1_ACHN |
NCI60_1_BT.549 | NCI60_1_BT-549 |
NCI60_1_CAKI.1 | NCI60_1_CAKI-1 |
NCI60_1_CCRF.CEM | NCI60_1_CCRF-CEM |
NCI60_1_COLO205 | NCI60_1_COLO205 |
NCI60_1_DU.145 | NCI60_1_DU-145 |
NCI60_1_EKVX | NCI60_1_EKVX |
NCI60_1_HCC.2998 | NCI60_1_HCC-2998 |
NCI60_1_HCT.116 | NCI60_1_HCT-116 |
NCI60_1_HCT.15 | NCI60_1_HCT-15 |
NCI60_1_HL.60 | NCI60_1_HL-60 |
NCI60_1_HOP.62 | NCI60_1_HOP-62 |
NCI60_1_HOP.92 | NCI60_1_HOP-92 |
NCI60_1_HS578T | NCI60_1_HS578T |
NCI60_1_HT29 | NCI60_1_HT29 |
NCI60_1_IGROV1_rep1 | NCI60_1_IGROV1_rep1 |
NCI60_1_IGROV1_rep2 | NCI60_1_IGROV1_rep2 |
NCI60_1_K.562 | NCI60_1_K-562 |
NCI60_1_KM12 | NCI60_1_KM12 |
NCI60_1_LOXIMVI | NCI60_1_LOXIMVI |
NCI60_1_M14 | NCI60_1_M14 |
NCI60_1_MALME.3M | NCI60_1_MALME-3M |
NCI60_1_MCF7 | NCI60_1_MCF7 |
NCI60_1_MDA.MB.231_ATCC | NCI60_1_MDA-MB-231_ATCC |
NCI60_1_MDA.MB.435 | NCI60_1_MDA-MB-435 |
NCI60_1_MDA.N | NCI60_1_MDA-N |
NCI60_1_MOLT.4 | NCI60_1_MOLT-4 |
NCI60_1_NCI.ADR.RES | NCI60_1_NCI-ADR-RES |
NCI60_1_NCI.H226 | NCI60_1_NCI-H226 |
NCI60_1_NCI.H322M | NCI60_1_NCI-H322M |
NCI60_1_NCI.H460 | NCI60_1_NCI-H460 |
NCI60_1_NCI.H522 | NCI60_1_NCI-H522 |
NCI60_1_OVCAR.3 | NCI60_1_OVCAR-3 |
NCI60_1_OVCAR.4 | NCI60_1_OVCAR-4 |
NCI60_1_OVCAR.5 | NCI60_1_OVCAR-5 |
NCI60_1_OVCAR.8 | NCI60_1_OVCAR-8 |
NCI60_1_PC.3 | NCI60_1_PC-3 |
NCI60_1_RPMI.8226 | NCI60_1_RPMI-8226 |
NCI60_1_RXF.393 | NCI60_1_RXF-393 |
NCI60_1_SF.268 | NCI60_1_SF-268 |
NCI60_1_SF.295 | NCI60_1_SF-295 |
NCI60_1_SF.539 | NCI60_1_SF-539 |
NCI60_1_SK.MEL.28 | NCI60_1_SK-MEL-28 |
NCI60_1_SK.MEL.2 | NCI60_1_SK-MEL-2 |
NCI60_1_SK.MEL.5 | NCI60_1_SK-MEL-5 |
NCI60_1_SK.OV.3 | NCI60_1_SK-OV-3 |
NCI60_1_SN12C | NCI60_1_SN12C |
NCI60_1_SNB.19 | NCI60_1_SNB-19 |
NCI60_1_SNB.75 | NCI60_1_SNB-75 |
NCI60_1_SR | NCI60_1_SR |
NCI60_1_SW.620 | NCI60_1_SW-620 |
NCI60_1_T47D | NCI60_1_T47D |
NCI60_1_TK.10 | NCI60_1_TK-10 |
NCI60_1_U251 | NCI60_1_U251 |
NCI60_1_UACC.257 | NCI60_1_UACC-257 |
NCI60_1_UACC.62 | NCI60_1_UACC-62 |
NCI60_1_UO.31 | NCI60_1_UO-31 |
Motif name | Z-value | Associated genes | Profile | Logo |
---|---|---|---|---|
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ | 8.82 |
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NRF1 | 7.10 |
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ELF2_GABPA_ELF5 | 6.22 |
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ZBTB33_CHD2 | 5.65 |
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TAF1 | 5.41 |
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MXI1_MYC_MYCN | 5.35 |
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ZNF711_TFAP2A_TFAP2D | 5.02 |
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RFX3_RFX2 | 4.94 |
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E2F7_E2F1 | 4.92 |
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ZNF143 | 4.86 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.