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averaged GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
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Results for GAGAACU
Z-value: 0.07
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miRNA associated with seed GAGAACU
| Name | miRBASE accession |
|---|---|
|
hsa-miR-146a-5p
|
MIMAT0000449 |
|
hsa-miR-146b-5p
|
MIMAT0002809 |
|
hsa-miR-7153-5p
|
MIMAT0028216 |
Activity profile of GAGAACU motif
Sorted Z-values of GAGAACU motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr18_-_13726510 | 0.21 |
ENST00000322247.3
ENST00000592976.1 ENST00000402563.1 ENST00000591269.1 |
FAM210A
|
family with sequence similarity 210, member A |
| chr8_+_56014949 | 0.17 |
ENST00000327381.6
|
XKR4
|
XK, Kell blood group complex subunit-related family, member 4 |
| chr2_+_85198216 | 0.16 |
ENST00000456682.1
ENST00000409785.4 |
KCMF1
|
potassium channel modulatory factor 1 |
| chr18_+_11981427 | 0.13 |
ENST00000269159.3
|
IMPA2
|
inositol(myo)-1(or 4)-monophosphatase 2 |
| chr15_-_52821247 | 0.11 |
ENST00000399231.3
ENST00000399233.2 |
MYO5A
|
myosin VA (heavy chain 12, myoxin) |
| chr16_-_69368774 | 0.10 |
ENST00000562949.1
|
RP11-343C2.12
|
Conserved oligomeric Golgi complex subunit 8 |
| chr15_+_92396920 | 0.09 |
ENST00000318445.6
|
SLCO3A1
|
solute carrier organic anion transporter family, member 3A1 |
| chr16_-_69364467 | 0.09 |
ENST00000288022.1
|
PDF
|
peptide deformylase (mitochondrial) |
| chr2_-_208030647 | 0.08 |
ENST00000309446.6
|
KLF7
|
Kruppel-like factor 7 (ubiquitous) |
| chr17_-_41174424 | 0.08 |
ENST00000355653.3
|
VAT1
|
vesicle amine transport 1 |
| chr6_+_160390102 | 0.07 |
ENST00000356956.1
|
IGF2R
|
insulin-like growth factor 2 receptor |
| chr1_-_179198702 | 0.07 |
ENST00000502732.1
|
ABL2
|
c-abl oncogene 2, non-receptor tyrosine kinase |
| chr3_+_11314099 | 0.05 |
ENST00000446450.2
ENST00000354956.5 ENST00000354449.3 ENST00000419112.1 |
ATG7
|
autophagy related 7 |
| chr13_+_100153665 | 0.05 |
ENST00000376387.4
|
TM9SF2
|
transmembrane 9 superfamily member 2 |
| chr6_-_90121938 | 0.05 |
ENST00000369415.4
|
RRAGD
|
Ras-related GTP binding D |
| chr9_+_71320596 | 0.04 |
ENST00000265382.3
|
PIP5K1B
|
phosphatidylinositol-4-phosphate 5-kinase, type I, beta |
| chr14_-_25519095 | 0.04 |
ENST00000419632.2
ENST00000358326.2 ENST00000396700.1 ENST00000548724.1 |
STXBP6
|
syntaxin binding protein 6 (amisyn) |
| chr8_-_89339705 | 0.04 |
ENST00000286614.6
|
MMP16
|
matrix metallopeptidase 16 (membrane-inserted) |
| chr3_-_125094093 | 0.03 |
ENST00000484491.1
ENST00000492394.1 ENST00000471196.1 ENST00000468369.1 ENST00000544464.1 ENST00000485866.1 ENST00000360647.4 |
ZNF148
|
zinc finger protein 148 |
| chr18_+_19749386 | 0.03 |
ENST00000269216.3
|
GATA6
|
GATA binding protein 6 |
| chr9_-_33264676 | 0.03 |
ENST00000472232.3
ENST00000379704.2 |
BAG1
|
BCL2-associated athanogene |
| chr14_-_68141535 | 0.03 |
ENST00000554659.1
|
VTI1B
|
vesicle transport through interaction with t-SNAREs 1B |
| chr17_-_30669138 | 0.02 |
ENST00000225805.4
ENST00000577809.1 |
C17orf75
|
chromosome 17 open reading frame 75 |
| chr3_-_79068594 | 0.02 |
ENST00000436010.2
|
ROBO1
|
roundabout, axon guidance receptor, homolog 1 (Drosophila) |
| chr17_+_28804380 | 0.02 |
ENST00000225724.5
ENST00000451249.2 ENST00000467337.2 ENST00000581721.1 ENST00000414833.2 |
GOSR1
|
golgi SNAP receptor complex member 1 |
| chr4_-_41750922 | 0.01 |
ENST00000226382.2
|
PHOX2B
|
paired-like homeobox 2b |
| chr20_+_62795827 | 0.01 |
ENST00000328439.1
ENST00000536311.1 |
MYT1
|
myelin transcription factor 1 |
| chr1_+_26737253 | 0.01 |
ENST00000326279.6
|
LIN28A
|
lin-28 homolog A (C. elegans) |
| chr6_-_24911195 | 0.01 |
ENST00000259698.4
|
FAM65B
|
family with sequence similarity 65, member B |
| chr2_+_113239710 | 0.01 |
ENST00000233336.6
|
TTL
|
tubulin tyrosine ligase |
| chr17_-_8055747 | 0.01 |
ENST00000317276.4
ENST00000581703.1 |
PER1
|
period circadian clock 1 |
| chr10_+_120967072 | 0.01 |
ENST00000392870.2
|
GRK5
|
G protein-coupled receptor kinase 5 |
| chr17_-_38020392 | 0.01 |
ENST00000346872.3
ENST00000439167.2 ENST00000377945.3 ENST00000394189.2 ENST00000377944.3 ENST00000377958.2 ENST00000535189.1 ENST00000377952.2 |
IKZF3
|
IKAROS family zinc finger 3 (Aiolos) |
| chr3_-_138553594 | 0.01 |
ENST00000477593.1
ENST00000483968.1 |
PIK3CB
|
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta |
| chr10_+_88516396 | 0.01 |
ENST00000372037.3
|
BMPR1A
|
bone morphogenetic protein receptor, type IA |
| chr11_-_36531774 | 0.00 |
ENST00000348124.5
ENST00000526995.1 |
TRAF6
|
TNF receptor-associated factor 6, E3 ubiquitin protein ligase |
| chr9_-_34589700 | 0.00 |
ENST00000351266.4
|
CNTFR
|
ciliary neurotrophic factor receptor |
| chr1_+_32573636 | 0.00 |
ENST00000373625.3
|
KPNA6
|
karyopherin alpha 6 (importin alpha 7) |
| chrX_-_41782249 | 0.00 |
ENST00000442742.2
ENST00000421587.2 ENST00000378166.4 ENST00000318588.9 ENST00000361962.4 |
CASK
|
calcium/calmodulin-dependent serine protein kinase (MAGUK family) |
Network of associatons between targets according to the STRING database.
First level regulatory network of GAGAACU
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0006021 | inositol biosynthetic process(GO:0006021) |
| 0.0 | 0.1 | GO:0051643 | regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0031585) secretory granule localization(GO:0032252) endoplasmic reticulum localization(GO:0051643) |
| 0.0 | 0.1 | GO:1901859 | late nucleophagy(GO:0044805) negative regulation of mitochondrial DNA replication(GO:0090298) negative regulation of mitochondrial DNA metabolic process(GO:1901859) single-organism membrane invagination(GO:1902534) |
| 0.0 | 0.1 | GO:0010637 | negative regulation of mitochondrial fusion(GO:0010637) |
| 0.0 | 0.0 | GO:0032911 | negative regulation of transforming growth factor beta1 production(GO:0032911) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0052833 | inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate 3-phosphatase activity(GO:0052832) inositol monophosphate 4-phosphatase activity(GO:0052833) inositol monophosphate phosphatase activity(GO:0052834) |
| 0.0 | 0.0 | GO:0052810 | 1-phosphatidylinositol-5-kinase activity(GO:0052810) |