averaged GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
GCM2 | hg19_v2_chr6_-_10882174_10882274 | 0.14 | 3.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_47105309 Show fit | 13.11 |
ENST00000599839.1
ENST00000596362.1 |
calmodulin 3 (phosphorylase kinase, delta) |
|
chrX_-_71526813 Show fit | 10.87 |
ENST00000246139.5
|
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 |
|
chr1_+_43824577 Show fit | 9.23 |
ENST00000310955.6
|
cell division cycle 20 |
|
chr1_+_43824669 Show fit | 9.19 |
ENST00000372462.1
|
cell division cycle 20 |
|
chr9_-_130635741 Show fit | 8.33 |
ENST00000223836.10
|
adenylate kinase 1 |
|
chr14_-_60097524 Show fit | 8.16 |
ENST00000342503.4
|
reticulon 1 |
|
chrX_-_71526999 Show fit | 7.65 |
ENST00000453707.2
ENST00000373619.3 |
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 |
|
chr1_-_55352834 Show fit | 7.51 |
ENST00000371269.3
|
24-dehydrocholesterol reductase |
|
chr14_-_60097297 Show fit | 7.44 |
ENST00000395090.1
|
reticulon 1 |
|
chr6_-_52859968 Show fit | 7.19 |
ENST00000370959.1
|
glutathione S-transferase alpha 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 27.3 | GO:0090129 | positive regulation of synapse maturation(GO:0090129) |
3.1 | 18.5 | GO:0071105 | response to interleukin-11(GO:0071105) |
1.3 | 10.6 | GO:0033211 | adiponectin-activated signaling pathway(GO:0033211) |
0.8 | 10.6 | GO:0048711 | positive regulation of astrocyte differentiation(GO:0048711) |
1.1 | 9.5 | GO:0071787 | endoplasmic reticulum tubular network assembly(GO:0071787) |
0.2 | 8.9 | GO:0015949 | nucleobase-containing small molecule interconversion(GO:0015949) |
0.2 | 8.7 | GO:2000300 | regulation of synaptic vesicle exocytosis(GO:2000300) |
0.9 | 8.0 | GO:0046146 | tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146) |
1.5 | 7.5 | GO:0033489 | cholesterol biosynthetic process via desmosterol(GO:0033489) cholesterol biosynthetic process via lathosterol(GO:0033490) |
0.2 | 7.2 | GO:1901685 | glutathione derivative metabolic process(GO:1901685) glutathione derivative biosynthetic process(GO:1901687) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 20.4 | GO:0000139 | Golgi membrane(GO:0000139) |
0.7 | 18.4 | GO:0005680 | anaphase-promoting complex(GO:0005680) |
0.1 | 13.0 | GO:0000922 | spindle pole(GO:0000922) |
3.5 | 10.6 | GO:0097453 | mesaxon(GO:0097453) ensheathing process(GO:1990015) |
1.5 | 10.6 | GO:0005956 | protein kinase CK2 complex(GO:0005956) |
0.2 | 8.8 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
1.7 | 8.6 | GO:0009368 | endopeptidase Clp complex(GO:0009368) |
1.0 | 7.2 | GO:0072669 | tRNA-splicing ligase complex(GO:0072669) |
0.5 | 6.4 | GO:0070578 | RISC-loading complex(GO:0070578) |
0.0 | 6.1 | GO:0005796 | Golgi lumen(GO:0005796) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 21.4 | GO:0005509 | calcium ion binding(GO:0005509) |
3.1 | 18.4 | GO:0010997 | anaphase-promoting complex binding(GO:0010997) |
1.3 | 18.1 | GO:0050693 | LBD domain binding(GO:0050693) |
0.8 | 10.6 | GO:0033691 | sialic acid binding(GO:0033691) |
0.1 | 10.6 | GO:0043021 | ribonucleoprotein complex binding(GO:0043021) |
0.0 | 10.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 9.8 | GO:0046961 | proton-transporting ATPase activity, rotational mechanism(GO:0046961) |
0.4 | 9.5 | GO:0070410 | co-SMAD binding(GO:0070410) |
0.3 | 9.1 | GO:0004033 | aldo-keto reductase (NADP) activity(GO:0004033) |
0.3 | 8.9 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 30.6 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.3 | 18.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 11.2 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.4 | 10.6 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
0.2 | 8.9 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.3 | 7.4 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.1 | 6.7 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.2 | 6.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.1 | 4.3 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 3.9 | ST DIFFERENTIATION PATHWAY IN PC12 CELLS | Differentiation Pathway in PC12 Cells; this is a specific case of PAC1 Receptor Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 22.0 | REACTOME RAS ACTIVATION UOPN CA2 INFUX THROUGH NMDA RECEPTOR | Genes involved in Ras activation uopn Ca2+ infux through NMDA receptor |
0.7 | 18.4 | REACTOME CONVERSION FROM APC C CDC20 TO APC C CDH1 IN LATE ANAPHASE | Genes involved in Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase |
0.3 | 10.6 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.2 | 10.6 | REACTOME SIGNAL TRANSDUCTION BY L1 | Genes involved in Signal transduction by L1 |
0.3 | 9.8 | REACTOME INSULIN RECEPTOR RECYCLING | Genes involved in Insulin receptor recycling |
0.2 | 9.5 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.3 | 8.9 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.3 | 8.3 | REACTOME CHONDROITIN SULFATE BIOSYNTHESIS | Genes involved in Chondroitin sulfate biosynthesis |
0.2 | 7.5 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 7.2 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |