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GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
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Results for AACGGAA
Z-value: 0.17
Motif logo
miRNA associated with seed AACGGAA
| Name | miRBASE accession |
|---|---|
|
hsa-miR-191-5p
|
MIMAT0000440 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr10_-_81205373 Show fit | 0.53 |
ENST00000372336.3
|
zinc finger, CCHC domain containing 24 |
|
| chr3_+_115342159 Show fit | 0.52 |
ENST00000305124.6
|
growth associated protein 43 |
|
| chr6_+_116601265 Show fit | 0.38 |
ENST00000452085.3
|
dermatan sulfate epimerase |
|
| chr7_-_108096822 Show fit | 0.32 |
ENST00000379028.3
ENST00000413765.2 ENST00000379022.4 |
neuronal cell adhesion molecule |
|
| chr8_-_134115118 Show fit | 0.29 |
ENST00000395352.3
ENST00000338087.5 |
Src-like-adaptor |
|
| chr17_-_46623441 Show fit | 0.25 |
ENST00000330070.4
|
homeobox B2 |
|
| chr7_-_71801980 Show fit | 0.24 |
ENST00000329008.5
|
calneuron 1 |
|
| chr9_+_133454943 Show fit | 0.13 |
ENST00000319725.9
|
far upstream element (FUSE) binding protein 3 |
|
| chr5_+_149887672 Show fit | 0.13 |
ENST00000261797.6
|
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 |
|
| chr12_+_122242597 Show fit | 0.11 |
ENST00000267197.5
|
SET domain containing 1B |
Network of associatons between targets according to the STRING database.
First level regulatory network of AACGGAA
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0016198 | axon choice point recognition(GO:0016198) |
| 0.0 | 0.5 | GO:0015012 | heparan sulfate proteoglycan biosynthetic process(GO:0015012) |
| 0.1 | 0.3 | GO:0021569 | rhombomere 3 development(GO:0021569) |
| 0.1 | 0.3 | GO:0045162 | clustering of voltage-gated sodium channels(GO:0045162) |
| 0.0 | 0.1 | GO:0060061 | Spemann organizer formation(GO:0060061) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0032584 | growth cone membrane(GO:0032584) |
| 0.0 | 0.3 | GO:0043194 | axon initial segment(GO:0043194) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0035727 | lysophosphatidic acid binding(GO:0035727) |
| 0.1 | 0.4 | GO:0047757 | chondroitin-glucuronate 5-epimerase activity(GO:0047757) |
| 0.0 | 0.3 | GO:0086080 | protein binding involved in heterotypic cell-cell adhesion(GO:0086080) |
| 0.0 | 0.1 | GO:0050119 | N-acetylglucosamine deacetylase activity(GO:0050119) |
| 0.0 | 0.1 | GO:0070984 | SET domain binding(GO:0070984) |
| 0.0 | 0.1 | GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity(GO:0004616) |