Project
GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
Navigation
Downloads
Results for AGCAGCG
Z-value: 0.64
Motif logo
miRNA associated with seed AGCAGCG
| Name | miRBASE accession |
|---|---|
|
hsa-miR-503-5p
|
MIMAT0002874 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr2_+_113033164 Show fit | 5.26 |
ENST00000409871.1
ENST00000343936.4 |
zinc finger CCCH-type containing 6 |
|
| chr9_-_95432536 Show fit | 5.15 |
ENST00000287996.3
|
inositol 1,3,4,5,6-pentakisphosphate 2-kinase |
|
| chr2_+_149632783 Show fit | 4.88 |
ENST00000435030.1
|
kinesin family member 5C |
|
| chr6_+_71122974 Show fit | 4.75 |
ENST00000418814.2
|
family with sequence similarity 135, member A |
|
| chr17_+_57232690 Show fit | 4.74 |
ENST00000262293.4
|
proline rich 11 |
|
| chr8_-_42397037 Show fit | 4.67 |
ENST00000342228.3
|
solute carrier family 20 (phosphate transporter), member 2 |
|
| chr19_-_17799008 Show fit | 4.46 |
ENST00000519716.2
|
unc-13 homolog A (C. elegans) |
|
| chr2_-_37193606 Show fit | 3.66 |
ENST00000379213.2
ENST00000263918.4 |
striatin, calmodulin binding protein |
|
| chr3_-_114790179 Show fit | 3.55 |
ENST00000462705.1
|
zinc finger and BTB domain containing 20 |
|
| chr7_+_138916231 Show fit | 3.44 |
ENST00000473989.3
ENST00000288561.8 |
ubinuclein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AGCAGCG
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 23.8 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
| 0.1 | 6.5 | GO:0070830 | bicellular tight junction assembly(GO:0070830) |
| 0.3 | 5.2 | GO:0006020 | inositol metabolic process(GO:0006020) |
| 0.2 | 4.9 | GO:0008045 | motor neuron axon guidance(GO:0008045) |
| 0.5 | 4.7 | GO:0044341 | sodium-dependent phosphate transport(GO:0044341) |
| 1.1 | 4.5 | GO:0099525 | presynaptic dense core granule exocytosis(GO:0099525) |
| 0.0 | 3.6 | GO:0032755 | positive regulation of interleukin-6 production(GO:0032755) |
| 0.0 | 3.6 | GO:0009301 | snRNA transcription(GO:0009301) snRNA transcription from RNA polymerase II promoter(GO:0042795) |
| 0.4 | 3.4 | GO:0060414 | aorta smooth muscle tissue morphogenesis(GO:0060414) |
| 0.0 | 3.4 | GO:0008344 | adult locomotory behavior(GO:0008344) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 36.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 8.1 | GO:0031461 | cullin-RING ubiquitin ligase complex(GO:0031461) |
| 0.5 | 7.0 | GO:0035253 | ciliary rootlet(GO:0035253) |
| 1.5 | 4.5 | GO:0044305 | calyx of Held(GO:0044305) |
| 0.0 | 4.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.8 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.1 | 3.7 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
| 0.0 | 3.7 | GO:0005923 | bicellular tight junction(GO:0005923) |
| 0.6 | 3.4 | GO:0097129 | cyclin D2-CDK4 complex(GO:0097129) |
| 0.0 | 3.4 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 19.4 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.2 | 7.0 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
| 0.0 | 6.4 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
| 0.8 | 5.9 | GO:0017002 | activin-activated receptor activity(GO:0017002) |
| 0.0 | 4.8 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
| 1.2 | 4.7 | GO:0015319 | sodium:inorganic phosphate symporter activity(GO:0015319) |
| 0.3 | 4.6 | GO:0019992 | diacylglycerol binding(GO:0019992) |
| 0.2 | 3.7 | GO:0070016 | armadillo repeat domain binding(GO:0070016) |
| 0.0 | 3.7 | GO:0003714 | transcription corepressor activity(GO:0003714) |
| 0.0 | 3.5 | GO:0019901 | protein kinase binding(GO:0019901) |
Gene overrepresentation in C2:CP category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.9 | PID ALK1 PATHWAY | ALK1 signaling events |
| 0.1 | 4.2 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
| 0.1 | 3.8 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
| 0.1 | 3.4 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.1 | 2.7 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
| 0.0 | 2.5 | PID MYC PATHWAY | C-MYC pathway |
| 0.0 | 2.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 1.8 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.0 | 1.7 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 1.6 | PID P53 REGULATION PATHWAY | p53 pathway |
Gene overrepresentation in C2:CP:REACTOME category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.9 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
| 0.2 | 5.9 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
| 0.1 | 3.3 | REACTOME CRMPS IN SEMA3A SIGNALING | Genes involved in CRMPs in Sema3A signaling |
| 0.1 | 3.3 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
| 0.1 | 3.0 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
| 0.0 | 3.0 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 2.6 | REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS | Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs |
| 0.2 | 2.5 | REACTOME SIGNALING BY FGFR3 MUTANTS | Genes involved in Signaling by FGFR3 mutants |
| 0.1 | 2.5 | REACTOME CELL CELL JUNCTION ORGANIZATION | Genes involved in Cell-cell junction organization |
| 0.1 | 2.5 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |