GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ALX3 | hg19_v2_chr1_-_110613276_110613322 | 0.01 | 8.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_25865159 Show fit | 8.36 |
ENST00000502949.1
ENST00000264868.5 ENST00000513691.1 ENST00000514872.1 |
sel-1 suppressor of lin-12-like 3 (C. elegans) |
|
chr2_-_89160770 Show fit | 6.39 |
ENST00000390240.2
|
immunoglobulin kappa joining 3 |
|
chr10_+_5135981 Show fit | 6.28 |
ENST00000380554.3
|
aldo-keto reductase family 1, member C3 |
|
chr4_+_113568207 Show fit | 5.96 |
ENST00000511529.1
|
La ribonucleoprotein domain family, member 7 |
|
chr2_+_90077680 Show fit | 5.75 |
ENST00000390270.2
|
immunoglobulin kappa variable 3D-20 |
|
chr16_-_28634874 Show fit | 5.64 |
ENST00000395609.1
ENST00000350842.4 |
sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 |
|
chr2_-_89385283 Show fit | 5.38 |
ENST00000390252.2
|
immunoglobulin kappa variable 3-15 |
|
chr11_-_63376013 Show fit | 5.34 |
ENST00000540943.1
|
phospholipase A2, group XVI |
|
chr4_-_103749205 Show fit | 5.27 |
ENST00000508249.1
|
ubiquitin-conjugating enzyme E2D 3 |
|
chr4_-_103749179 Show fit | 4.43 |
ENST00000502690.1
|
ubiquitin-conjugating enzyme E2D 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 24.9 | GO:0006958 | complement activation, classical pathway(GO:0006958) |
0.9 | 21.6 | GO:0006068 | ethanol catabolic process(GO:0006068) |
0.3 | 11.9 | GO:0070979 | protein K11-linked ubiquitination(GO:0070979) |
0.6 | 11.2 | GO:1903504 | regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504) |
0.1 | 8.3 | GO:0002377 | immunoglobulin production(GO:0002377) |
0.2 | 7.0 | GO:0033119 | negative regulation of RNA splicing(GO:0033119) |
0.7 | 6.9 | GO:0006685 | sphingomyelin catabolic process(GO:0006685) |
2.3 | 6.8 | GO:0003147 | neural crest cell migration involved in heart formation(GO:0003147) cell migration involved in heart formation(GO:0060974) anterior neural tube closure(GO:0061713) |
0.4 | 6.4 | GO:0071447 | cellular response to hydroperoxide(GO:0071447) |
0.1 | 6.4 | GO:0002260 | lymphocyte homeostasis(GO:0002260) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 17.1 | GO:0005615 | extracellular space(GO:0005615) |
0.4 | 11.2 | GO:0005680 | anaphase-promoting complex(GO:0005680) |
0.0 | 9.3 | GO:0010008 | endosome membrane(GO:0010008) |
0.1 | 9.0 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.1 | 8.1 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 6.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.4 | 6.8 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
0.1 | 5.6 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.7 | 4.7 | GO:0044326 | dendritic spine neck(GO:0044326) |
0.0 | 4.4 | GO:0005901 | caveola(GO:0005901) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 31.6 | GO:0003823 | antigen binding(GO:0003823) |
3.1 | 21.6 | GO:0047894 | flavonol 3-sulfotransferase activity(GO:0047894) |
0.3 | 11.9 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.7 | 6.9 | GO:0004767 | sphingomyelin phosphodiesterase activity(GO:0004767) |
1.7 | 6.8 | GO:0061714 | folic acid receptor activity(GO:0061714) |
1.6 | 6.3 | GO:0047023 | enone reductase activity(GO:0035671) androsterone dehydrogenase activity(GO:0047023) indanol dehydrogenase activity(GO:0047718) |
0.0 | 6.1 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.2 | 5.7 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.0 | 5.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
1.3 | 5.3 | GO:1901375 | acetylcholine transmembrane transporter activity(GO:0005277) secondary active organic cation transmembrane transporter activity(GO:0008513) acetate ester transmembrane transporter activity(GO:1901375) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 12.2 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.1 | 5.7 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 5.6 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 3.6 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
0.0 | 2.8 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 2.1 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 1.3 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 1.3 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 1.2 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 1.2 | PID BMP PATHWAY | BMP receptor signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 21.6 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.3 | 12.2 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.0 | 8.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.4 | 5.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.4 | 5.7 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.3 | 5.3 | REACTOME ACYL CHAIN REMODELLING OF PS | Genes involved in Acyl chain remodelling of PS |
0.1 | 4.5 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
0.1 | 3.6 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 3.3 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.0 | 3.3 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |