ISMARA results: GAGAACU

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GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)

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Results for GAGAACU

Z-value: 0.06

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miRNA associated with seed GAGAACU

Name	miRBASE accession
hsa-miR-146a-5p miRBase	MIMAT0000449
hsa-miR-146b-5p miRBase	MIMAT0002809
hsa-miR-7153-5p miRBase	MIMAT0028216

Activity profile of GAGAACU motif

Sorted Z-values of GAGAACU motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr18_-_13726510 Show fit	0.21	ENST00000322247.3 ENST00000592976.1 ENST00000402563.1 ENST00000591269.1	FAM210A Ensembl NCBI GeneCards UniProt NextProt Show fit	family with sequence similarity 210, member A
chr8_+_56014949 Show fit	0.17	ENST00000327381.6	XKR4 Ensembl NCBI GeneCards UniProt NextProt Show fit	XK, Kell blood group complex subunit-related family, member 4
chr2_+_85198216 Show fit	0.16	ENST00000456682.1 ENST00000409785.4	KCMF1 Ensembl NCBI GeneCards UniProt NextProt Show fit	potassium channel modulatory factor 1
chr18_+_11981427 Show fit	0.13	ENST00000269159.3	IMPA2 Ensembl NCBI GeneCards UniProt NextProt Show fit	inositol(myo)-1(or 4)-monophosphatase 2
chr15_-_52821247 Show fit	0.11	ENST00000399231.3 ENST00000399233.2	MYO5A Ensembl NCBI GeneCards UniProt NextProt Show fit	myosin VA (heavy chain 12, myoxin)
chr16_-_69368774 Show fit	0.10	ENST00000562949.1	RP11-343C2.12 Ensembl NCBI GeneCards UniProt NextProt Show fit	Conserved oligomeric Golgi complex subunit 8
chr15_+_92396920 Show fit	0.09	ENST00000318445.6	SLCO3A1 Ensembl NCBI GeneCards UniProt NextProt Show fit	solute carrier organic anion transporter family, member 3A1
chr16_-_69364467 Show fit	0.09	ENST00000288022.1	PDF Ensembl NCBI GeneCards UniProt NextProt Show fit	peptide deformylase (mitochondrial)
chr2_-_208030647 Show fit	0.08	ENST00000309446.6	KLF7 Ensembl NCBI GeneCards UniProt NextProt Show fit	Kruppel-like factor 7 (ubiquitous)
chr17_-_41174424 Show fit	0.08	ENST00000355653.3	VAT1 Ensembl NCBI GeneCards UniProt NextProt Show fit	vesicle amine transport 1

Showing 1 to 10 of 39 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAACU

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

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Total log-likelihood	Term	Description
0.1	GO:0006021	inositol biosynthetic process(GO:0006021)
0.1	GO:0051643	regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0031585) secretory granule localization(GO:0032252) endoplasmic reticulum localization(GO:0051643)
0.1	GO:1901859	late nucleophagy(GO:0044805) negative regulation of mitochondrial DNA replication(GO:0090298) negative regulation of mitochondrial DNA metabolic process(GO:1901859) single-organism membrane invagination(GO:1902534)
0.1	GO:0010637	negative regulation of mitochondrial fusion(GO:0010637)
0.0	GO:0032911	negative regulation of transforming growth factor beta1 production(GO:0032911)

Showing 1 to 5 of 5 entries

Gene overrepresentation in cellular_component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0032593	insulin-responsive compartment(GO:0032593)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular_function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0052833	inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate 3-phosphatase activity(GO:0052832) inositol monophosphate 4-phosphatase activity(GO:0052833) inositol monophosphate phosphatase activity(GO:0052834)
0.0	0.0	GO:0052810	1-phosphatidylinositol-5-kinase activity(GO:0052810)

Showing 1 to 2 of 2 entries

Results for GAGAACU

Z-value: 0.06

Motif logo

miRNA associated with seed GAGAACU

Activity profile of GAGAACU motif

Sorted Z-values of GAGAACU motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAACU

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category: