GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
RORC | hg19_v2_chr1_-_151804222_151804228, hg19_v2_chr1_-_151804314_151804348, hg19_v2_chr1_-_151798546_151798590 | -0.02 | 7.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_7167980 Show fit | 5.55 |
ENST00000360817.5
ENST00000402681.3 |
complement component 1, s subcomponent |
|
chr1_-_153522562 Show fit | 5.51 |
ENST00000368714.1
|
S100 calcium binding protein A4 |
|
chr19_-_10450287 Show fit | 3.16 |
ENST00000589261.1
ENST00000590569.1 ENST00000589580.1 ENST00000589249.1 |
intercellular adhesion molecule 3 |
|
chr9_-_110251836 Show fit | 3.12 |
ENST00000374672.4
|
Kruppel-like factor 4 (gut) |
|
chr14_-_23451467 Show fit | 2.23 |
ENST00000555074.1
ENST00000361265.4 |
RP11-298I3.5 ajuba LIM protein |
|
chr11_-_19223523 Show fit | 1.94 |
ENST00000265968.3
|
cysteine and glycine-rich protein 3 (cardiac LIM protein) |
|
chr11_-_64527425 Show fit | 1.85 |
ENST00000377432.3
|
phosphorylase, glycogen, muscle |
|
chr12_+_93963590 Show fit | 1.81 |
ENST00000340600.2
|
suppressor of cytokine signaling 2 |
|
chr12_+_93964158 Show fit | 1.70 |
ENST00000549206.1
|
suppressor of cytokine signaling 2 |
|
chr1_+_104198377 Show fit | 1.62 |
ENST00000370083.4
|
amylase, alpha 1A (salivary) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 5.6 | GO:0001867 | complement activation, lectin pathway(GO:0001867) |
0.0 | 5.5 | GO:0001837 | epithelial to mesenchymal transition(GO:0001837) |
0.2 | 3.5 | GO:0040015 | negative regulation of multicellular organism growth(GO:0040015) |
0.0 | 3.2 | GO:0002223 | stimulatory C-type lectin receptor signaling pathway(GO:0002223) |
1.0 | 3.1 | GO:0071409 | negative regulation of muscle hyperplasia(GO:0014740) cellular response to cycloheximide(GO:0071409) |
0.1 | 2.7 | GO:0007194 | negative regulation of adenylate cyclase activity(GO:0007194) |
0.4 | 2.3 | GO:2000158 | positive regulation of ubiquitin-specific protease activity(GO:2000158) |
0.3 | 2.2 | GO:0035331 | negative regulation of hippo signaling(GO:0035331) |
0.5 | 1.9 | GO:0035995 | detection of muscle stretch(GO:0035995) |
0.1 | 1.9 | GO:0005980 | glycogen catabolic process(GO:0005980) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.6 | GO:0072562 | blood microparticle(GO:0072562) |
0.0 | 3.3 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 3.1 | GO:0005719 | nuclear euchromatin(GO:0005719) |
0.0 | 2.2 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.0 | 1.9 | GO:0030018 | Z disc(GO:0030018) |
0.0 | 1.2 | GO:0030315 | T-tubule(GO:0030315) |
0.1 | 0.8 | GO:0033391 | chromatoid body(GO:0033391) |
0.0 | 0.8 | GO:0031616 | spindle pole centrosome(GO:0031616) |
0.0 | 0.6 | GO:0033179 | proton-transporting V-type ATPase, V0 domain(GO:0033179) |
0.0 | 0.6 | GO:0031143 | pseudopodium(GO:0031143) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.3 | 5.5 | GO:0050786 | RAGE receptor binding(GO:0050786) |
0.6 | 3.5 | GO:0008269 | JAK pathway signal transduction adaptor activity(GO:0008269) |
0.0 | 3.2 | GO:0005178 | integrin binding(GO:0005178) |
0.6 | 3.1 | GO:0001010 | transcription factor activity, sequence-specific DNA binding transcription factor recruiting(GO:0001010) |
0.1 | 2.7 | GO:0008329 | signaling pattern recognition receptor activity(GO:0008329) pattern recognition receptor activity(GO:0038187) |
0.4 | 2.3 | GO:0035800 | deubiquitinase activator activity(GO:0035800) |
0.2 | 2.2 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.5 | 1.9 | GO:0008184 | glycogen phosphorylase activity(GO:0008184) |
0.2 | 1.9 | GO:0031433 | telethonin binding(GO:0031433) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.6 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.0 | 3.5 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.1 | 3.2 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.0 | 3.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 1.4 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 1.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.9 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
0.0 | 0.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.0 | 0.6 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 0.6 | NABA COLLAGENS | Genes encoding collagen proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 5.6 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 3.5 | REACTOME GROWTH HORMONE RECEPTOR SIGNALING | Genes involved in Growth hormone receptor signaling |
0.0 | 3.2 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.2 | 3.1 | REACTOME SYNTHESIS SECRETION AND DEACYLATION OF GHRELIN | Genes involved in Synthesis, Secretion, and Deacylation of Ghrelin |
0.1 | 2.3 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.1 | 2.0 | REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | Genes involved in CREB phosphorylation through the activation of Ras |
0.1 | 1.9 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.1 | 1.6 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |
0.0 | 1.5 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 1.4 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |