ISMARA results: UGUGCGU

Project

GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)

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Results for UGUGCGU

Z-value: 0.01

Motif logo

miRNA associated with seed UGUGCGU

Name	miRBASE accession
hsa-miR-210-3p miRBase	MIMAT0000267

Activity profile of UGUGCGU motif

Sorted Z-values of UGUGCGU motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_+_27491572 Show fit	0.36	ENST00000301904.3	SCARA3 Ensembl NCBI GeneCards UniProt NextProt Show fit	scavenger receptor class A, member 3
chr3_+_32147997 Show fit	0.21	ENST00000282541.5	GPD1L Ensembl NCBI GeneCards UniProt NextProt Show fit	glycerol-3-phosphate dehydrogenase 1-like
chr7_-_10979750 Show fit	0.16	ENST00000339600.5	NDUFA4 Ensembl NCBI GeneCards UniProt NextProt Show fit	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa
chr5_-_132113036 Show fit	0.15	ENST00000378706.1	SEPT8 Ensembl NCBI GeneCards UniProt NextProt Show fit	septin 8
chr1_+_155051305 Show fit	0.09	ENST00000368408.3	EFNA3 Ensembl NCBI GeneCards UniProt NextProt Show fit	ephrin-A3
chr12_-_111021110 Show fit	0.04	ENST00000354300.3	PPTC7 Ensembl NCBI GeneCards UniProt NextProt Show fit	PTC7 protein phosphatase homolog (S. cerevisiae)
chr2_-_160472952 Show fit	0.03	ENST00000541068.2 ENST00000355831.2 ENST00000343439.5 ENST00000392782.1	BAZ2B Ensembl NCBI GeneCards UniProt NextProt Show fit	bromodomain adjacent to zinc finger domain, 2B
chr20_-_48330377 Show fit	0.03	ENST00000371711.4	B4GALT5 Ensembl NCBI GeneCards UniProt NextProt Show fit	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5
chr2_+_85198216 Show fit	0.02	ENST00000456682.1 ENST00000409785.4	KCMF1 Ensembl NCBI GeneCards UniProt NextProt Show fit	potassium channel modulatory factor 1
chr10_+_11206925 Show fit	0.01	ENST00000354440.2 ENST00000315874.4 ENST00000427450.1	CELF2 Ensembl NCBI GeneCards UniProt NextProt Show fit	CUGBP, Elav-like family member 2

Showing 1 to 10 of 13 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of UGUGCGU

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0009650	UV protection(GO:0009650)
0.1	0.2	GO:0006072	glycerol-3-phosphate metabolic process(GO:0006072) negative regulation of protein kinase C signaling(GO:0090038)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular_component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0009331	glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.0	0.2	GO:0005751	mitochondrial respiratory chain complex IV(GO:0005751)

Showing 1 to 2 of 2 entries

Results for UGUGCGU

Z-value: 0.01

Motif logo

miRNA associated with seed UGUGCGU

Activity profile of UGUGCGU motif

Sorted Z-values of UGUGCGU motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of UGUGCGU

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category: