GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_+_169075554 Show fit | 20.88 |
ENST00000367815.4
|
ATPase, Na+/K+ transporting, beta 1 polypeptide |
|
chr14_-_69445968 Show fit | 19.21 |
ENST00000438964.2
|
actinin, alpha 1 |
|
chr14_-_69445793 Show fit | 18.77 |
ENST00000538545.2
ENST00000394419.4 |
actinin, alpha 1 |
|
chr14_-_69446034 Show fit | 16.09 |
ENST00000193403.6
|
actinin, alpha 1 |
|
chr8_-_27468842 Show fit | 11.91 |
ENST00000523500.1
|
clusterin |
|
chr3_-_57583185 Show fit | 11.53 |
ENST00000463880.1
|
ADP-ribosylation factor 4 |
|
chr15_-_77363513 Show fit | 11.36 |
ENST00000267970.4
|
tetraspanin 3 |
|
chr19_+_36631867 Show fit | 10.91 |
ENST00000588780.1
|
calpain, small subunit 1 |
|
chr19_+_47104553 Show fit | 10.39 |
ENST00000598871.1
ENST00000594523.1 |
calmodulin 3 (phosphorylase kinase, delta) |
|
chr11_+_86511569 Show fit | 9.86 |
ENST00000441050.1
|
protease, serine, 23 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.4 | 54.1 | GO:0051639 | actin filament network formation(GO:0051639) |
2.7 | 29.4 | GO:0031584 | activation of phospholipase D activity(GO:0031584) apical protein localization(GO:0045176) |
4.7 | 28.0 | GO:0061517 | macrophage proliferation(GO:0061517) microglial cell proliferation(GO:0061518) regulation of neuronal signal transduction(GO:1902847) positive regulation of neurofibrillary tangle assembly(GO:1902998) |
3.8 | 22.5 | GO:0070315 | G1 to G0 transition involved in cell differentiation(GO:0070315) |
5.2 | 20.9 | GO:1903288 | protein transport into plasma membrane raft(GO:0044861) positive regulation of potassium ion import(GO:1903288) |
0.0 | 14.0 | GO:0016567 | protein ubiquitination(GO:0016567) |
0.1 | 13.2 | GO:0006892 | post-Golgi vesicle-mediated transport(GO:0006892) |
3.9 | 11.7 | GO:1902396 | protein localization to bicellular tight junction(GO:1902396) |
1.0 | 11.5 | GO:0006983 | ER overload response(GO:0006983) |
0.1 | 10.9 | GO:0070268 | cornification(GO:0070268) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 54.1 | GO:0005916 | fascia adherens(GO:0005916) |
0.2 | 29.4 | GO:0043197 | dendritic spine(GO:0043197) |
1.8 | 28.0 | GO:0097418 | neurofibrillary tangle(GO:0097418) |
1.0 | 20.9 | GO:0005890 | sodium:potassium-exchanging ATPase complex(GO:0005890) |
0.3 | 20.8 | GO:0030315 | T-tubule(GO:0030315) |
0.1 | 19.2 | GO:0000922 | spindle pole(GO:0000922) |
0.2 | 17.6 | GO:0016459 | myosin complex(GO:0016459) |
0.0 | 14.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.1 | 13.4 | GO:0055037 | recycling endosome(GO:0055037) |
0.5 | 11.7 | GO:0031143 | pseudopodium(GO:0031143) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.2 | 54.1 | GO:0017166 | vinculin binding(GO:0017166) |
1.8 | 43.4 | GO:0031402 | sodium ion binding(GO:0031402) |
1.1 | 29.4 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
1.4 | 28.0 | GO:0051787 | misfolded protein binding(GO:0051787) |
0.8 | 17.6 | GO:0030898 | actin-dependent ATPase activity(GO:0030898) |
0.1 | 16.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.0 | 12.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.3 | 11.7 | GO:0042974 | retinoic acid receptor binding(GO:0042974) |
0.3 | 10.9 | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity(GO:0004198) |
0.2 | 10.8 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 49.7 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.2 | 32.7 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.2 | 31.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 15.3 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.3 | 11.3 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.2 | 10.5 | PID LKB1 PATHWAY | LKB1 signaling events |
0.3 | 9.4 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 6.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 6.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 5.9 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 65.7 | REACTOME NEPHRIN INTERACTIONS | Genes involved in Nephrin interactions |
0.8 | 35.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.2 | 28.0 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
1.0 | 19.3 | REACTOME RAS ACTIVATION UOPN CA2 INFUX THROUGH NMDA RECEPTOR | Genes involved in Ras activation uopn Ca2+ infux through NMDA receptor |
0.1 | 16.6 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.4 | 11.7 | REACTOME SIGNALING BY CONSTITUTIVELY ACTIVE EGFR | Genes involved in Signaling by constitutively active EGFR |
0.1 | 8.6 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.3 | 7.2 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.4 | 6.8 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.3 | 6.6 | REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI | Genes involved in Synthesis of glycosylphosphatidylinositol (GPI) |