GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_222846 Show fit | 16.23 |
ENST00000251595.6
ENST00000397806.1 |
hemoglobin, alpha 2 |
|
chr3_+_10206545 Show fit | 13.01 |
ENST00000256458.4
|
interleukin-1 receptor-associated kinase 2 |
|
chr11_-_66725837 Show fit | 12.02 |
ENST00000393958.2
ENST00000393960.1 ENST00000524491.1 ENST00000355677.3 |
pyruvate carboxylase |
|
chr19_-_17185848 Show fit | 11.53 |
ENST00000593360.1
|
HAUS augmin-like complex, subunit 8 |
|
chr17_-_41466555 Show fit | 10.08 |
ENST00000586231.1
|
long intergenic non-protein coding RNA 910 |
|
chr7_+_44143925 Show fit | 9.93 |
ENST00000223357.3
|
AE binding protein 1 |
|
chrX_+_56259316 Show fit | 9.78 |
ENST00000468660.1
|
Kruppel-like factor 8 |
|
chr11_-_66336060 Show fit | 9.49 |
ENST00000310325.5
|
cathepsin F |
|
chr12_+_57914742 Show fit | 9.14 |
ENST00000551351.1
|
methyl-CpG binding domain protein 6 |
|
chr16_+_55542910 Show fit | 9.05 |
ENST00000262134.5
|
lysophosphatidylcholine acyltransferase 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.2 | 15.5 | GO:0019072 | viral genome packaging(GO:0019072) viral RNA genome packaging(GO:0019074) |
0.8 | 14.4 | GO:0034162 | toll-like receptor 9 signaling pathway(GO:0034162) |
3.5 | 14.1 | GO:0006542 | glutamine biosynthetic process(GO:0006542) |
1.5 | 12.1 | GO:0034587 | piRNA metabolic process(GO:0034587) |
0.2 | 11.6 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
1.5 | 10.6 | GO:0002414 | immunoglobulin transcytosis in epithelial cells(GO:0002414) |
1.0 | 10.6 | GO:0002775 | antimicrobial peptide production(GO:0002775) antibacterial peptide production(GO:0002778) |
2.4 | 9.6 | GO:0019470 | 4-hydroxyproline catabolic process(GO:0019470) |
0.2 | 9.6 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
3.1 | 9.2 | GO:0007439 | ectodermal digestive tract development(GO:0007439) embryonic ectodermal digestive tract development(GO:0048611) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 60.5 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 36.8 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.2 | 20.9 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) potassium channel complex(GO:0034705) |
0.1 | 18.3 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
2.2 | 17.7 | GO:0005672 | transcription factor TFIIA complex(GO:0005672) |
0.2 | 17.6 | GO:0005930 | axoneme(GO:0005930) ciliary plasm(GO:0097014) |
0.1 | 14.4 | GO:0031901 | early endosome membrane(GO:0031901) |
0.1 | 12.7 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.4 | 11.9 | GO:0000795 | synaptonemal complex(GO:0000795) |
0.0 | 9.7 | GO:0043235 | receptor complex(GO:0043235) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 28.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.5 | 23.6 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
0.0 | 20.2 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
0.1 | 18.4 | GO:0017137 | Rab GTPase binding(GO:0017137) |
0.2 | 17.0 | GO:0030971 | receptor tyrosine kinase binding(GO:0030971) |
4.0 | 15.9 | GO:0097001 | ceramide binding(GO:0097001) |
1.8 | 14.3 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
3.5 | 14.1 | GO:0004356 | glutamate-ammonia ligase activity(GO:0004356) ammonia ligase activity(GO:0016211) acid-ammonia (or amide) ligase activity(GO:0016880) |
0.1 | 12.7 | GO:0008083 | growth factor activity(GO:0008083) |
0.3 | 12.2 | GO:0001103 | RNA polymerase II repressing transcription factor binding(GO:0001103) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 35.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 27.3 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.1 | 25.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 21.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 13.1 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.4 | 12.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.2 | 10.7 | ST GAQ PATHWAY | G alpha q Pathway |
0.2 | 10.0 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.2 | 8.8 | PID S1P S1P3 PATHWAY | S1P3 pathway |
0.2 | 8.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 26.1 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
0.4 | 18.0 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.2 | 13.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.5 | 13.5 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
1.3 | 13.0 | REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
0.5 | 12.2 | REACTOME ACYL CHAIN REMODELLING OF PC | Genes involved in Acyl chain remodelling of PC |
0.8 | 11.8 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.1 | 10.6 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.5 | 10.0 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.2 | 9.5 | REACTOME DOWNSTREAM TCR SIGNALING | Genes involved in Downstream TCR signaling |