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GNF SymAtlas + NCI-60 cancer cell lines, human (Su, 2004; Ross, 2000)

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Results for CACCUCC

Z-value: 0.10

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miRNA associated with seed CACCUCC

NamemiRBASE accession
hsa-miR-1306-5p
MIMAT0022726

Activity profile of CACCUCC motif

Sorted Z-values of CACCUCC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_+_175792459 0.50 ENST00000310389.5
ARL10
ADP-ribosylation factor-like 10
chr9_-_101471479 0.48 ENST00000259455.2
GABBR2
gamma-aminobutyric acid (GABA) B receptor, 2
chr1_+_46972668 0.45 ENST00000371956.4
ENST00000360032.3
DMBX1
diencephalon/mesencephalon homeobox 1
chr22_+_40390930 0.41 ENST00000333407.6
FAM83F
family with sequence similarity 83, member F
chr8_+_11141925 0.39 ENST00000221086.3
MTMR9
myotubularin related protein 9
chr11_-_45687128 0.36 ENST00000308064.2
CHST1
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
chr7_+_30951461 0.30 ENST00000311813.4
AQP1
aquaporin 1 (Colton blood group)
chr1_+_19638788 0.29 ENST00000375155.3
ENST00000375153.3
ENST00000400548.2
PQLC2
PQ loop repeat containing 2
chr9_-_130829588 0.27 ENST00000373078.4
NAIF1
nuclear apoptosis inducing factor 1
chr11_-_64570706 0.23 ENST00000294066.2
ENST00000377350.3
MAP4K2
mitogen-activated protein kinase kinase kinase kinase 2
chr14_-_77843390 0.22 ENST00000216468.7
TMED8
transmembrane emp24 protein transport domain containing 8
chr22_-_44708731 0.20 ENST00000381176.4
KIAA1644
KIAA1644
chr14_+_23775971 0.19 ENST00000250405.5
BCL2L2
BCL2-like 2
chr20_+_42875887 0.17 ENST00000342560.5
GDAP1L1
ganglioside induced differentiation associated protein 1-like 1
chr19_+_1450112 0.17 ENST00000590469.1
ENST00000233607.2
ENST00000238483.4
ENST00000590877.1
APC2
adenomatosis polyposis coli 2
chr16_-_66584059 0.15 ENST00000417693.3
ENST00000544898.1
ENST00000569718.1
ENST00000527284.1
ENST00000299697.7
ENST00000451102.2
TK2
thymidine kinase 2, mitochondrial
chr9_-_123691047 0.14 ENST00000373887.3
TRAF1
TNF receptor-associated factor 1
chr6_-_30524951 0.13 ENST00000376621.3
GNL1
guanine nucleotide binding protein-like 1
chr15_-_34502278 0.11 ENST00000559515.1
ENST00000256544.3
ENST00000560108.1
ENST00000559462.1
KATNBL1
katanin p80 subunit B-like 1
chr2_-_25475120 0.10 ENST00000380746.4
ENST00000402667.1
DNMT3A
DNA (cytosine-5-)-methyltransferase 3 alpha
chr8_+_56014949 0.09 ENST00000327381.6
XKR4
XK, Kell blood group complex subunit-related family, member 4
chr2_-_169104651 0.08 ENST00000355999.4
STK39
serine threonine kinase 39
chr22_-_39268308 0.07 ENST00000407418.3
CBX6
chromobox homolog 6
chr15_-_73661605 0.07 ENST00000261917.3
HCN4
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
chr3_-_48471454 0.04 ENST00000296440.6
ENST00000448774.2
PLXNB1
plexin B1
chr17_-_42298331 0.02 ENST00000343638.5
UBTF
upstream binding transcription factor, RNA polymerase I
chr14_+_23790655 0.01 ENST00000397276.2
PABPN1
poly(A) binding protein, nuclear 1

Network of associatons between targets according to the STRING database.

First level regulatory network of CACCUCC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0072019 carbon dioxide transmembrane transport(GO:0035378) proximal convoluted tubule development(GO:0072019) metanephric proximal convoluted tubule development(GO:0072229)
0.1 0.3 GO:1903401 L-lysine transmembrane transport(GO:1903401)
0.0 0.5 GO:0008343 adult feeding behavior(GO:0008343)
0.0 0.1 GO:0046104 thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.0 0.1 GO:0023016 signal transduction by trans-phosphorylation(GO:0023016) negative regulation of rubidium ion transport(GO:2000681) negative regulation of rubidium ion transmembrane transporter activity(GO:2000687)
0.0 0.4 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.1 GO:0060011 Sertoli cell proliferation(GO:0060011)
0.0 0.2 GO:0035414 negative regulation of catenin import into nucleus(GO:0035414)
0.0 0.0 GO:1900220 semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis(GO:1900220)
0.0 0.1 GO:0071321 cellular response to cGMP(GO:0071321)
0.0 0.5 GO:0007214 gamma-aminobutyric acid signaling pathway(GO:0007214)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0038039 G-protein coupled receptor heterodimeric complex(GO:0038039)
0.1 0.3 GO:0020005 symbiont-containing vacuole(GO:0020003) symbiont-containing vacuole membrane(GO:0020005)
0.0 0.2 GO:0016342 catenin complex(GO:0016342)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0004965 G-protein coupled GABA receptor activity(GO:0004965)
0.1 0.3 GO:0035379 carbon dioxide transmembrane transporter activity(GO:0035379)
0.1 0.3 GO:0015189 L-lysine transmembrane transporter activity(GO:0015189)
0.1 0.4 GO:0001517 N-acetylglucosamine 6-O-sulfotransferase activity(GO:0001517)
0.0 0.1 GO:0004137 deoxycytidine kinase activity(GO:0004137) thymidine kinase activity(GO:0004797)
0.0 0.4 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.0 0.1 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.1 GO:0005222 intracellular cAMP activated cation channel activity(GO:0005222)
0.0 0.2 GO:0008349 MAP kinase kinase kinase kinase activity(GO:0008349)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors)
0.0 0.3 REACTOME PASSIVE TRANSPORT BY AQUAPORINS Genes involved in Passive Transport by Aquaporins
0.0 0.4 REACTOME KERATAN SULFATE BIOSYNTHESIS Genes involved in Keratan sulfate biosynthesis