Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ARNT | hg19_v2_chr1_-_150849174_150849200, hg19_v2_chr1_-_150849047_150849085 | 0.42 | 3.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_26934165 Show fit | 5.49 |
ENST00000456917.1
|
MIR155 host gene (non-protein coding) |
|
chr8_+_17354617 Show fit | 4.59 |
ENST00000470360.1
|
solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 |
|
chr1_+_65613852 Show fit | 4.44 |
ENST00000327299.7
|
adenylate kinase 4 |
|
chr8_+_17354587 Show fit | 4.42 |
ENST00000494857.1
ENST00000522656.1 |
solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 |
|
chr15_+_89182156 Show fit | 3.78 |
ENST00000379224.5
|
interferon stimulated exonuclease gene 20kDa |
|
chr15_+_89182178 Show fit | 3.73 |
ENST00000559876.1
|
interferon stimulated exonuclease gene 20kDa |
|
chr5_-_131826457 Show fit | 3.38 |
ENST00000437654.1
ENST00000245414.4 |
interferon regulatory factor 1 |
|
chr15_+_89181974 Show fit | 3.24 |
ENST00000306072.5
|
interferon stimulated exonuclease gene 20kDa |
|
chr3_+_5020801 Show fit | 3.14 |
ENST00000256495.3
|
basic helix-loop-helix family, member e40 |
|
chr2_-_10587897 Show fit | 2.73 |
ENST00000405333.1
ENST00000443218.1 |
ornithine decarboxylase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 10.7 | GO:0000738 | DNA catabolic process, exonucleolytic(GO:0000738) |
3.0 | 9.0 | GO:0034226 | lysine import(GO:0034226) L-lysine import(GO:0061461) L-lysine import into cell(GO:1903410) |
0.5 | 5.1 | GO:0046940 | nucleoside monophosphate phosphorylation(GO:0046940) |
0.1 | 3.9 | GO:0061718 | NADH regeneration(GO:0006735) canonical glycolysis(GO:0061621) glucose catabolic process to pyruvate(GO:0061718) |
0.8 | 3.4 | GO:2000564 | CD8-positive, alpha-beta T cell proliferation(GO:0035740) regulation of CD8-positive, alpha-beta T cell proliferation(GO:2000564) |
0.4 | 2.9 | GO:0035795 | negative regulation of mitochondrial membrane permeability(GO:0035795) |
0.7 | 2.7 | GO:0033387 | putrescine biosynthetic process from ornithine(GO:0033387) |
0.0 | 2.6 | GO:0045071 | negative regulation of viral genome replication(GO:0045071) |
0.1 | 2.5 | GO:0006610 | ribosomal protein import into nucleus(GO:0006610) |
0.1 | 2.4 | GO:0043153 | entrainment of circadian clock by photoperiod(GO:0043153) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.8 | GO:0015030 | Cajal body(GO:0015030) |
0.1 | 3.9 | GO:0042645 | nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645) |
0.5 | 3.6 | GO:0000015 | phosphopyruvate hydratase complex(GO:0000015) |
0.0 | 3.1 | GO:0030666 | endocytic vesicle membrane(GO:0030666) |
0.2 | 2.8 | GO:0034709 | methylosome(GO:0034709) |
0.2 | 2.1 | GO:0030870 | Mre11 complex(GO:0030870) |
0.0 | 2.0 | GO:0043034 | costamere(GO:0043034) |
0.0 | 1.9 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.1 | 1.8 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
0.1 | 1.8 | GO:0030014 | CCR4-NOT complex(GO:0030014) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.6 | 10.7 | GO:0008859 | exoribonuclease II activity(GO:0008859) |
2.3 | 9.0 | GO:0005287 | high-affinity basic amino acid transmembrane transporter activity(GO:0005287) high-affinity arginine transmembrane transporter activity(GO:0005289) high-affinity lysine transmembrane transporter activity(GO:0005292) |
0.9 | 4.4 | GO:0046899 | nucleoside triphosphate adenylate kinase activity(GO:0046899) |
0.1 | 3.9 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
0.5 | 3.6 | GO:0004634 | phosphopyruvate hydratase activity(GO:0004634) |
0.1 | 3.6 | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity(GO:0004693) |
0.3 | 3.1 | GO:0043426 | MRF binding(GO:0043426) |
0.0 | 2.6 | GO:0003725 | double-stranded RNA binding(GO:0003725) |
0.1 | 2.5 | GO:0004003 | ATP-dependent DNA helicase activity(GO:0004003) |
0.1 | 2.3 | GO:0008139 | nuclear localization sequence binding(GO:0008139) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 16.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.1 | 8.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 4.6 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 4.3 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 4.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.7 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.1 | 2.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.1 | 2.1 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.1 | 1.9 | PID PRL SIGNALING EVENTS PATHWAY | Signaling events mediated by PRL |
0.1 | 1.9 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 14.1 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.2 | 9.6 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.1 | 6.8 | REACTOME GLYCOLYSIS | Genes involved in Glycolysis |
0.1 | 3.0 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.1 | 2.7 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.1 | 2.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 2.5 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
0.1 | 2.4 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 2.4 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 2.3 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |