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Inflammatory response time course, HUVEC (Wada et al., 2009)

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Results for CCAGCAU

Z-value: 0.19

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miRNA associated with seed CCAGCAU

NamemiRBASE accession
hsa-miR-338-3p
MIMAT0000763

Activity profile of CCAGCAU motif

Sorted Z-values of CCAGCAU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr1_+_61547894 0.39 ENST00000403491.3
NFIA
nuclear factor I/A
chr20_-_39317868 0.30 ENST00000373313.2
MAFB
v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B
chr4_-_149365827 0.27 ENST00000344721.4
NR3C2
nuclear receptor subfamily 3, group C, member 2
chr2_-_152684977 0.22 ENST00000428992.2
ENST00000295087.8
ARL5A
ADP-ribosylation factor-like 5A
chr8_+_37654424 0.19 ENST00000315215.7
GPR124
G protein-coupled receptor 124
chr10_-_33623564 0.17 ENST00000374875.1
ENST00000374822.4
NRP1
neuropilin 1
chr1_+_164528866 0.17 ENST00000420696.2
PBX1
pre-B-cell leukemia homeobox 1
chr6_+_16238786 0.16 ENST00000259727.4
GMPR
guanosine monophosphate reductase
chr5_-_107006596 0.14 ENST00000333274.6
EFNA5
ephrin-A5
chr10_-_102279586 0.12 ENST00000370345.3
ENST00000451524.1
ENST00000370329.5
SEC31B
SEC31 homolog B (S. cerevisiae)
chr17_+_61086917 0.11 ENST00000424789.2
ENST00000389520.4
TANC2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr11_-_82782861 0.11 ENST00000524635.1
ENST00000526205.1
ENST00000527633.1
ENST00000533486.1
ENST00000533276.2
RAB30
RAB30, member RAS oncogene family
chr8_+_6565854 0.11 ENST00000285518.6
AGPAT5
1-acylglycerol-3-phosphate O-acyltransferase 5
chr15_+_85359911 0.10 ENST00000258888.5
ALPK3
alpha-kinase 3
chr9_-_80646374 0.10 ENST00000286548.4
GNAQ
guanine nucleotide binding protein (G protein), q polypeptide
chr11_-_73309228 0.10 ENST00000356467.4
ENST00000064778.4
FAM168A
family with sequence similarity 168, member A
chr7_+_139026057 0.10 ENST00000541515.3
LUC7L2
LUC7-like 2 (S. cerevisiae)
chr3_-_28390581 0.09 ENST00000479665.1
AZI2
5-azacytidine induced 2
chr14_-_76127519 0.09 ENST00000256319.6
C14orf1
chromosome 14 open reading frame 1
chr9_+_115513003 0.08 ENST00000374232.3
SNX30
sorting nexin family member 30
chr17_+_80317121 0.08 ENST00000333437.4
TEX19
testis expressed 19
chr10_-_75634260 0.08 ENST00000372765.1
ENST00000351293.3
CAMK2G
calcium/calmodulin-dependent protein kinase II gamma
chr6_-_116601044 0.07 ENST00000368608.3
TSPYL1
TSPY-like 1
chr22_+_40573921 0.07 ENST00000454349.2
ENST00000335727.9
TNRC6B
trinucleotide repeat containing 6B
chr18_-_72921303 0.06 ENST00000322342.3
ZADH2
zinc binding alcohol dehydrogenase domain containing 2
chr1_+_229440129 0.06 ENST00000366688.3
SPHAR
S-phase response (cyclin related)
chrX_-_54522558 0.06 ENST00000375135.3
FGD1
FYVE, RhoGEF and PH domain containing 1
chr18_-_53255766 0.06 ENST00000566286.1
ENST00000564999.1
ENST00000566279.1
ENST00000354452.3
ENST00000356073.4
TCF4
transcription factor 4
chr2_-_85788605 0.06 ENST00000233838.4
GGCX
gamma-glutamyl carboxylase
chr8_-_124553437 0.06 ENST00000517956.1
ENST00000443022.2
FBXO32
F-box protein 32
chr5_-_36152031 0.06 ENST00000296603.4
LMBRD2
LMBR1 domain containing 2
chr9_+_35749203 0.06 ENST00000456972.2
ENST00000378078.4
RGP1
RGP1 retrograde golgi transport homolog (S. cerevisiae)
chr10_-_91403625 0.06 ENST00000322191.6
ENST00000342512.3
ENST00000371774.2
PANK1
pantothenate kinase 1
chr1_+_201798269 0.06 ENST00000361565.4
IPO9
importin 9
chr4_-_55991752 0.05 ENST00000263923.4
KDR
kinase insert domain receptor (a type III receptor tyrosine kinase)
chr12_+_72233487 0.05 ENST00000482439.2
ENST00000550746.1
ENST00000491063.1
ENST00000319106.8
ENST00000485960.2
ENST00000393309.3
TBC1D15
TBC1 domain family, member 15
chr9_-_14693417 0.05 ENST00000380916.4
ZDHHC21
zinc finger, DHHC-type containing 21
chr11_+_113930291 0.05 ENST00000335953.4
ZBTB16
zinc finger and BTB domain containing 16
chr6_-_116575226 0.05 ENST00000420283.1
TSPYL4
TSPY-like 4
chr6_+_125283566 0.05 ENST00000521654.2
RNF217
ring finger protein 217
chr3_-_134093395 0.05 ENST00000249883.5
AMOTL2
angiomotin like 2
chr2_-_101767715 0.04 ENST00000376840.4
ENST00000409318.1
TBC1D8
TBC1 domain family, member 8 (with GRAM domain)
chr12_-_57400227 0.04 ENST00000300101.2
ZBTB39
zinc finger and BTB domain containing 39
chr11_+_4116005 0.04 ENST00000300738.5
RRM1
ribonucleotide reductase M1
chr14_-_39901618 0.04 ENST00000554932.1
ENST00000298097.7
FBXO33
F-box protein 33
chr2_-_105946491 0.04 ENST00000393359.2
TGFBRAP1
transforming growth factor, beta receptor associated protein 1
chr7_+_74072011 0.04 ENST00000324896.4
ENST00000353920.4
ENST00000346152.4
ENST00000416070.1
GTF2I
general transcription factor IIi
chr15_+_39873268 0.04 ENST00000397591.2
ENST00000260356.5
THBS1
thrombospondin 1
chr5_+_86564739 0.04 ENST00000456692.2
ENST00000512763.1
ENST00000506290.1
RASA1
RAS p21 protein activator (GTPase activating protein) 1
chr19_+_1752372 0.03 ENST00000382349.4
ONECUT3
one cut homeobox 3
chr11_+_111473108 0.03 ENST00000304987.3
SIK2
salt-inducible kinase 2
chr15_-_75249793 0.03 ENST00000322177.5
RPP25
ribonuclease P/MRP 25kDa subunit
chr11_-_129062093 0.03 ENST00000310343.9
ARHGAP32
Rho GTPase activating protein 32
chr9_-_86571628 0.03 ENST00000376344.3
C9orf64
chromosome 9 open reading frame 64
chr1_-_40137710 0.03 ENST00000235628.1
NT5C1A
5'-nucleotidase, cytosolic IA
chr10_-_126849068 0.03 ENST00000494626.2
ENST00000337195.5
CTBP2
C-terminal binding protein 2
chr5_+_134240800 0.03 ENST00000512783.1
PCBD2
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
chr2_-_70475730 0.03 ENST00000445587.1
ENST00000433529.2
ENST00000415783.2
TIA1
TIA1 cytotoxic granule-associated RNA binding protein
chr1_+_244214577 0.03 ENST00000358704.4
ZBTB18
zinc finger and BTB domain containing 18
chr10_+_89622870 0.03 ENST00000371953.3
PTEN
phosphatase and tensin homolog
chr6_-_2634820 0.03 ENST00000296847.3
C6orf195
chromosome 6 open reading frame 195
chr16_+_68771128 0.03 ENST00000261769.5
ENST00000422392.2
CDH1
cadherin 1, type 1, E-cadherin (epithelial)
chr2_-_220094294 0.03 ENST00000436856.1
ENST00000428226.1
ENST00000409422.1
ENST00000431715.1
ENST00000457841.1
ENST00000439812.1
ENST00000361242.4
ENST00000396761.2
ATG9A
autophagy related 9A
chr6_+_21593972 0.03 ENST00000244745.1
ENST00000543472.1
SOX4
SRY (sex determining region Y)-box 4
chrX_-_152864632 0.03 ENST00000406277.2
FAM58A
family with sequence similarity 58, member A
chr8_+_21915368 0.03 ENST00000265800.5
ENST00000517418.1
DMTN
dematin actin binding protein
chr9_+_125026882 0.03 ENST00000297908.3
ENST00000373730.3
ENST00000546115.1
ENST00000344641.3
MRRF
mitochondrial ribosome recycling factor
chr3_+_183873098 0.03 ENST00000313143.3
DVL3
dishevelled segment polarity protein 3
chr9_-_86153218 0.03 ENST00000304195.3
ENST00000376438.1
FRMD3
FERM domain containing 3
chr10_+_102295616 0.03 ENST00000299163.6
HIF1AN
hypoxia inducible factor 1, alpha subunit inhibitor
chr1_+_109792641 0.03 ENST00000271332.3
CELSR2
cadherin, EGF LAG seven-pass G-type receptor 2
chr3_-_114790179 0.02 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr7_-_26240357 0.02 ENST00000354667.4
ENST00000356674.7
HNRNPA2B1
heterogeneous nuclear ribonucleoprotein A2/B1
chr1_-_154531095 0.02 ENST00000292211.4
UBE2Q1
ubiquitin-conjugating enzyme E2Q family member 1
chr7_-_158622210 0.02 ENST00000251527.5
ESYT2
extended synaptotagmin-like protein 2
chr3_+_107241783 0.02 ENST00000415149.2
ENST00000402543.1
ENST00000325805.8
ENST00000427402.1
BBX
bobby sox homolog (Drosophila)
chr7_+_139044621 0.02 ENST00000354926.4
C7orf55-LUC7L2
C7orf55-LUC7L2 readthrough
chr17_-_65241281 0.02 ENST00000358691.5
ENST00000580168.1
HELZ
helicase with zinc finger
chrX_+_70586082 0.02 ENST00000373790.4
ENST00000449580.1
ENST00000423759.1
TAF1
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa
chr2_+_48010221 0.02 ENST00000234420.5
MSH6
mutS homolog 6
chr16_-_77468945 0.02 ENST00000282849.5
ADAMTS18
ADAM metallopeptidase with thrombospondin type 1 motif, 18
chrX_+_109246285 0.02 ENST00000372073.1
ENST00000372068.2
ENST00000288381.4
TMEM164
transmembrane protein 164
chr5_+_43602750 0.02 ENST00000505678.2
ENST00000512422.1
ENST00000264663.5
NNT
nicotinamide nucleotide transhydrogenase
chr2_+_210444142 0.02 ENST00000360351.4
ENST00000361559.4
MAP2
microtubule-associated protein 2
chrX_+_123095155 0.02 ENST00000371160.1
ENST00000435103.1
STAG2
stromal antigen 2
chr1_-_78148324 0.02 ENST00000370801.3
ENST00000433749.1
ZZZ3
zinc finger, ZZ-type containing 3
chr10_+_73975742 0.02 ENST00000299381.4
ANAPC16
anaphase promoting complex subunit 16
chr5_+_175223313 0.02 ENST00000359546.4
CPLX2
complexin 2
chr1_+_26438289 0.02 ENST00000374271.4
ENST00000374269.1
PDIK1L
PDLIM1 interacting kinase 1 like
chr2_-_166930131 0.02 ENST00000303395.4
ENST00000409050.1
ENST00000423058.2
ENST00000375405.3
SCN1A
sodium channel, voltage-gated, type I, alpha subunit
chr1_-_51425902 0.02 ENST00000396153.2
FAF1
Fas (TNFRSF6) associated factor 1
chr11_-_30038490 0.02 ENST00000328224.6
KCNA4
potassium voltage-gated channel, shaker-related subfamily, member 4
chr9_+_129567282 0.02 ENST00000449886.1
ENST00000373464.4
ENST00000450858.1
ZBTB43
zinc finger and BTB domain containing 43
chr13_-_107220455 0.02 ENST00000400198.3
ARGLU1
arginine and glutamate rich 1
chr4_+_41992489 0.02 ENST00000264451.7
SLC30A9
solute carrier family 30 (zinc transporter), member 9
chr9_-_136933134 0.01 ENST00000303407.7
BRD3
bromodomain containing 3
chr13_-_77900814 0.01 ENST00000544440.2
MYCBP2
MYC binding protein 2, E3 ubiquitin protein ligase
chr12_-_4647606 0.01 ENST00000261250.3
ENST00000541014.1
ENST00000545746.1
ENST00000542080.1
C12orf4
chromosome 12 open reading frame 4
chr11_-_10562710 0.01 ENST00000528665.1
ENST00000265981.2
RNF141
ring finger protein 141
chr2_+_113239710 0.01 ENST00000233336.6
TTL
tubulin tyrosine ligase
chr17_-_40950698 0.01 ENST00000328434.7
COA3
cytochrome c oxidase assembly factor 3
chr19_+_34663397 0.01 ENST00000540746.2
ENST00000544216.3
ENST00000433627.5
LSM14A
LSM14A, SCD6 homolog A (S. cerevisiae)
chr6_+_72596604 0.01 ENST00000348717.5
ENST00000517960.1
ENST00000518273.1
ENST00000522291.1
ENST00000521978.1
ENST00000520567.1
ENST00000264839.7
RIMS1
regulating synaptic membrane exocytosis 1
chr12_+_65563329 0.01 ENST00000308330.2
LEMD3
LEM domain containing 3
chr19_-_38210622 0.01 ENST00000591664.1
ENST00000355202.4
ZNF607
zinc finger protein 607
chr5_+_140560980 0.01 ENST00000361016.2
PCDHB16
protocadherin beta 16
chr18_-_9614515 0.01 ENST00000400556.3
ENST00000400555.3
PPP4R1
protein phosphatase 4, regulatory subunit 1
chr10_-_70287231 0.01 ENST00000609923.1
SLC25A16
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16
chr21_-_43299404 0.01 ENST00000422911.1
ENST00000398548.1
ENST00000538201.1
ENST00000269844.3
PRDM15
PR domain containing 15
chr10_+_105726862 0.01 ENST00000335753.4
ENST00000369755.3
SLK
STE20-like kinase
chr22_-_44894178 0.01 ENST00000341255.3
LDOC1L
leucine zipper, down-regulated in cancer 1-like
chr17_+_30677136 0.01 ENST00000394670.4
ENST00000321233.6
ENST00000394673.2
ENST00000341711.6
ENST00000579634.1
ENST00000580759.1
ENST00000342555.6
ENST00000577908.1
ENST00000394679.5
ENST00000582165.1
ZNF207
zinc finger protein 207
chr6_-_146135880 0.01 ENST00000237281.4
FBXO30
F-box protein 30
chr16_-_69419871 0.01 ENST00000603068.1
ENST00000254942.3
ENST00000567296.2
TERF2
telomeric repeat binding factor 2
chr2_-_69870835 0.01 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr2_-_96811170 0.01 ENST00000288943.4
DUSP2
dual specificity phosphatase 2
chr5_+_158690089 0.00 ENST00000296786.6
UBLCP1
ubiquitin-like domain containing CTD phosphatase 1
chr19_+_45754505 0.00 ENST00000262891.4
ENST00000300843.4
MARK4
MAP/microtubule affinity-regulating kinase 4
chr2_-_182545603 0.00 ENST00000295108.3
NEUROD1
neuronal differentiation 1
chr17_+_26698677 0.00 ENST00000457710.3
SARM1
sterile alpha and TIR motif containing 1
chr2_-_85555385 0.00 ENST00000377386.3
TGOLN2
trans-golgi network protein 2
chr12_+_862089 0.00 ENST00000315939.6
ENST00000537687.1
ENST00000447667.2
WNK1
WNK lysine deficient protein kinase 1
chr9_-_34126730 0.00 ENST00000361264.4
DCAF12
DDB1 and CUL4 associated factor 12
chr12_-_12674032 0.00 ENST00000298573.4
DUSP16
dual specificity phosphatase 16
chr1_+_153606513 0.00 ENST00000368694.3
CHTOP
chromatin target of PRMT1
chr5_+_141488070 0.00 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr3_-_14166316 0.00 ENST00000396914.3
ENST00000295767.5
CHCHD4
coiled-coil-helix-coiled-coil-helix domain containing 4
chr4_-_25162188 0.00 ENST00000302922.3
SEPSECS
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
chrX_+_17393543 0.00 ENST00000380060.3
NHS
Nance-Horan syndrome (congenital cataracts and dental anomalies)
chr2_+_28974668 0.00 ENST00000296122.6
ENST00000395366.2
PPP1CB
protein phosphatase 1, catalytic subunit, beta isozyme
chr2_-_2334888 0.00 ENST00000428368.2
ENST00000399161.2
MYT1L
myelin transcription factor 1-like
chr3_-_71774516 0.00 ENST00000425534.3
EIF4E3
eukaryotic translation initiation factor 4E family member 3
chr7_-_87849340 0.00 ENST00000419179.1
ENST00000265729.2
SRI
sorcin
chr9_-_123964114 0.00 ENST00000373840.4
RAB14
RAB14, member RAS oncogene family
chr14_-_36989427 0.00 ENST00000354822.5
NKX2-1
NK2 homeobox 1
chr1_-_35658736 0.00 ENST00000357214.5
SFPQ
splicing factor proline/glutamine-rich
chr15_+_79165151 0.00 ENST00000331268.5
MORF4L1
mortality factor 4 like 1
chr1_+_32645269 0.00 ENST00000373610.3
TXLNA
taxilin alpha

Network of associatons between targets according to the STRING database.

First level regulatory network of CCAGCAU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0021571 rhombomere 5 development(GO:0021571) central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284)
0.0 0.2 GO:1902378 vestibulocochlear nerve structural organization(GO:0021649) positive regulation of cytokine activity(GO:0060301) ganglion morphogenesis(GO:0061552) VEGF-activated neuropilin signaling pathway involved in axon guidance(GO:1902378) dorsal root ganglion morphogenesis(GO:1904835) otic placode development(GO:1905040)
0.0 0.1 GO:0044565 dendritic cell proliferation(GO:0044565)
0.0 0.1 GO:0006696 ergosterol biosynthetic process(GO:0006696) ergosterol metabolic process(GO:0008204)
0.0 0.4 GO:0072189 ureter development(GO:0072189)
0.0 0.1 GO:0048672 positive regulation of collateral sprouting(GO:0048672)
0.0 0.0 GO:0002605 negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of dendritic cell antigen processing and presentation(GO:0002605)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:1902560 GMP reductase complex(GO:1902560)
0.0 0.2 GO:0097443 sorting endosome(GO:0097443)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005169 neurotrophin TRKB receptor binding(GO:0005169)
0.0 0.2 GO:0016657 GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657)
0.0 0.2 GO:0038085 vascular endothelial growth factor binding(GO:0038085)
0.0 0.1 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.0 0.0 GO:0070052 collagen V binding(GO:0070052)
0.0 0.1 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.0 GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity(GO:0008124)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID VEGF VEGFR PATHWAY VEGF and VEGFR signaling network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions