Project
Inflammatory response time course, HUVEC (Wada et al., 2009)
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Results for CCAGCAU
Z-value: 0.19
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miRNA associated with seed CCAGCAU
| Name | miRBASE accession |
|---|---|
|
hsa-miR-338-3p
|
MIMAT0000763 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr1_+_61547894 Show fit | 0.39 |
ENST00000403491.3
|
nuclear factor I/A |
|
| chr20_-_39317868 Show fit | 0.30 |
ENST00000373313.2
|
v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B |
|
| chr4_-_149365827 Show fit | 0.27 |
ENST00000344721.4
|
nuclear receptor subfamily 3, group C, member 2 |
|
| chr2_-_152684977 Show fit | 0.22 |
ENST00000428992.2
ENST00000295087.8 |
ADP-ribosylation factor-like 5A |
|
| chr8_+_37654424 Show fit | 0.19 |
ENST00000315215.7
|
G protein-coupled receptor 124 |
|
| chr10_-_33623564 Show fit | 0.17 |
ENST00000374875.1
ENST00000374822.4 |
neuropilin 1 |
|
| chr1_+_164528866 Show fit | 0.17 |
ENST00000420696.2
|
pre-B-cell leukemia homeobox 1 |
|
| chr6_+_16238786 Show fit | 0.16 |
ENST00000259727.4
|
guanosine monophosphate reductase |
|
| chr5_-_107006596 Show fit | 0.14 |
ENST00000333274.6
|
ephrin-A5 |
|
| chr10_-_102279586 Show fit | 0.12 |
ENST00000370345.3
ENST00000451524.1 ENST00000370329.5 |
SEC31 homolog B (S. cerevisiae) |
Network of associatons between targets according to the STRING database.
First level regulatory network of CCAGCAU
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0072189 | ureter development(GO:0072189) |
| 0.1 | 0.3 | GO:0021571 | rhombomere 5 development(GO:0021571) central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284) |
| 0.0 | 0.2 | GO:1902378 | vestibulocochlear nerve structural organization(GO:0021649) positive regulation of cytokine activity(GO:0060301) ganglion morphogenesis(GO:0061552) VEGF-activated neuropilin signaling pathway involved in axon guidance(GO:1902378) dorsal root ganglion morphogenesis(GO:1904835) otic placode development(GO:1905040) |
| 0.0 | 0.1 | GO:0044565 | dendritic cell proliferation(GO:0044565) |
| 0.0 | 0.1 | GO:0006696 | ergosterol biosynthetic process(GO:0006696) ergosterol metabolic process(GO:0008204) |
| 0.0 | 0.1 | GO:0048672 | positive regulation of collateral sprouting(GO:0048672) |
| 0.0 | 0.0 | GO:0002605 | negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of dendritic cell antigen processing and presentation(GO:0002605) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:1902560 | GMP reductase complex(GO:1902560) |
| 0.0 | 0.2 | GO:0097443 | sorting endosome(GO:0097443) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | GO:0016657 | GMP reductase activity(GO:0003920) oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor(GO:0016657) |
| 0.0 | 0.2 | GO:0038085 | vascular endothelial growth factor binding(GO:0038085) |
| 0.0 | 0.1 | GO:0005169 | neurotrophin TRKB receptor binding(GO:0005169) |
| 0.0 | 0.1 | GO:0031826 | type 2A serotonin receptor binding(GO:0031826) |
| 0.0 | 0.1 | GO:0004594 | pantothenate kinase activity(GO:0004594) |
| 0.0 | 0.0 | GO:0070052 | collagen V binding(GO:0070052) |
| 0.0 | 0.0 | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity(GO:0008124) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |